Loading packages
#===============================================================================
#BTC.LineZero.Header.1.1.0
#===============================================================================
#R Markdown environment setup and reporting utility.
#===============================================================================
#RLB.Dependencies:
# knitr, magrittr, pacman, rio, rmarkdown, rmdformats, tibble, yaml
#===============================================================================
#Input for document parameters, libraries, file paths, and options.
#=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=
knitr::opts_chunk$set(message=FALSE, warning = FALSE)
path_working <- "/Users/minsikkim/Dropbox (Personal)/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git"
path_library <- "/Library/Frameworks/R.framework/Resources/library"
str_libraries <- c("readxl", "phyloseq", "tidyverse", "pacman", "yaml", "ggplot2", "microbiome", "decontam", "ggpubr", "lme4", "lmerTest", "Maaslin2", "qvalue")
YAML_header <-
'---
title: "Host-DNA DAanalysis with CLR and LME4"
author: "Minsik Kim"
date: "2032.09.25"
output:
rmdformats::downcute:
downcute_theme: "chaos"
code_folding: hide
fig_width: 6
fig_height: 6
---'
seed <- "20230925"
#=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
#Loads libraries, file paths, and other document options.
#=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
FUN.LineZero.Boot <- function() {
.libPaths(path_library)
require(pacman)
pacman::p_load(c("knitr", "rmarkdown", "rmdformats", "yaml"))
knitr::opts_knit$set(root.dir = path_working)
str_libraries |> unique() |> sort() -> str_libraries
pacman::p_load(char = str_libraries)
set.seed(seed)
}
FUN.LineZero.Boot()
#=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
#Outputs R environment report.
#=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
FUN.LineZero.Report <- function() {
cat("Line Zero Environment:\n\n")
paste("R:", pacman::p_version(), "\n") |> cat()
cat("Libraries:\n")
for (str_libraries in str_libraries) {
paste(
" ", str_libraries, ": ", pacman::p_version(package = str_libraries),
"\n", sep = ""
) |> cat()
}
paste("\nOperating System:", pacman::p_detectOS(), "\n") |> cat()
paste(" Library Path:", path_library, "\n") |> cat()
paste(" Working Path:", path_working, "\n") |> cat()
paste("Seed:", seed, "\n\n") |> cat()
cat("YAML Header:\n")
cat(YAML_header)
}
FUN.LineZero.Report()## Line Zero Environment:
##
## R: 4.3.1
## Libraries:
## readxl: 1.4.3
## phyloseq: 1.41.1
## tidyverse: 2.0.0
## pacman: 0.5.1
## yaml: 2.3.7
## ggplot2: 3.4.4
## microbiome: 1.22.0
## decontam: 1.20.0
## ggpubr: 0.6.0
## lme4: 1.1.34
## lmerTest: 3.1.3
## Maaslin2: 1.14.1
## qvalue: 2.32.0
##
## Operating System: Darwin
## Library Path: /Library/Frameworks/R.framework/Resources/library
## Working Path: /Users/minsikkim/Dropbox (Personal)/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git
## Seed: 20230925
##
## YAML Header:
## ---
## title: "Host-DNA DAanalysis with CLR and LME4"
## author: "Minsik Kim"
## date: "2032.09.25"
## output:
## rmdformats::downcute:
## downcute_theme: "chaos"
## code_folding: hide
## fig_width: 6
## fig_height: 6
## ---Loading data
# Loading data ------------------------------------------------------------
phyloseq <- readRDS("/Users/minsikkim/Dropbox/Project_SICAS2_microbiome/4_Data/2_Tidy/Phyloseq/PHY_20230521_MGK_host_tidy.rds")
# Adding alpha diversity indices ------------------------------------------Diversity calculation (for filtering)
alpha_diversity <- function(data) {
otu_table <- otu_table(data) %>% .[colSums(.) !=0]
S.obs <- rowSums(t(otu_table) != 0)
sample_data <- sample_data(data)
data_evenness <- vegan::diversity(t(otu_table)) / log(vegan::specnumber(t(otu_table))) # calculate evenness index using vegan package
data_shannon <- vegan::diversity(t(otu_table), index = "shannon") # calculate Shannon index using vegan package
data_hill <- exp(data_shannon) # calculate Hills index
data_dominance <- microbiome::dominance(otu_table, index = "all", rank = 1, aggregate = TRUE) # dominance (Berger-Parker index), etc.
data_invsimpson <- vegan::diversity(t(otu_table), index = "invsimpson") # calculate Shannon index using vegan package
alpha_diversity <- cbind(S.obs, data_shannon, data_hill, data_invsimpson, data_evenness,data_dominance) # combine all indices in one data table
sample_data <- merge(data.frame(sample_data), alpha_diversity, by = 0, all = T) %>% column_to_rownames(var = "Row.names")
}
sample_data(phyloseq$phyloseq_rel) <- sample_data(alpha_diversity(phyloseq$phyloseq_count))
sample_data(phyloseq$phyloseq_count) <- sample_data(alpha_diversity(phyloseq$phyloseq_count))
sample_data(phyloseq$phyloseq_path_rpk) <- sample_data(alpha_diversity(phyloseq$phyloseq_path_rpk))Chaning name of function taxa
#taxa_names(phyloseq$phyloseq_path_rpk) <- tax_table(phyloseq$phyloseq_path_rpk) %>% data.frame %>% .$group
phyloseq_unfiltered <- phyloseqRunning decontam for filtering
# Decontam ----------------------------------------------------------------
sample_data(phyloseq_unfiltered$phyloseq_rel)$is.neg <- grepl("Neg", sample_data(phyloseq_unfiltered$phyloseq_rel)$sample_type)
phyloseq_decontam_bal <- phyloseq_unfiltered$phyloseq_rel %>%
subset_samples(S.obs != 0) %>%
subset_samples(sample_type == "Neg." | sample_type == "BAL")
phyloseq_decontam_ns <- phyloseq_unfiltered$phyloseq_rel %>%
subset_samples(S.obs != 0) %>%
subset_samples(sample_type == "Neg." | sample_type == "Nasal")
phyloseq_decontam_spt <- phyloseq_unfiltered$phyloseq_rel %>%
subset_samples(S.obs != 0) %>%
subset_samples(sample_type == "Neg." | sample_type == "Sputum")
contaminant_combined_bal <-
data.frame("BAL", fix.empty.names = F,
isContaminant(phyloseq_decontam_bal, method="combined", neg = "is.neg", threshold = 0.1, conc = "DNA_bac_ng_uL") %>% subset(.,.$contaminant) %>% row.names
)
contaminant_combined_ns <-
data.frame("Nasal swab", fix.empty.names = F,
isContaminant(phyloseq_decontam_ns, method="combined", neg = "is.neg", threshold = 0.1, conc = "DNA_bac_ng_uL") %>% subset(.,.$contaminant) %>% row.names
)
contaminant_combined_spt <-
data.frame("Sputum", fix.empty.names = F,
isContaminant(phyloseq_decontam_spt, method="combined", neg = "is.neg", threshold = 0.1, conc = "DNA_bac_ng_uL") %>% subset(.,.$contaminant) %>% row.names
)
contaminants <- rbind(contaminant_combined_bal, contaminant_combined_ns, contaminant_combined_spt)
names(contaminants) <- c("Sample type", "Taxa")
species_italic <- function(data) {
names <- gsub("_", " ", data)
names <- gsub("[]]|[[]", "", names)
names <- gsub(" sp", " sp.", names)
names <- gsub(" sp.", "* sp.", names)
names <- gsub(" group", "* group.", names)
names <- ifelse(grepl("[*]", names), paste("*", names, sep = ""), paste("*", names, "*", sep = ""))
names
}
contaminants %>%
mutate(Taxa = species_italic(Taxa))contaminant <- contaminants$TaxaFiltering - prevalence & abundance
# Filtering samples failed sequencing -------------------------------------
phyloseq$phyloseq_count <- subset_samples(phyloseq$phyloseq_count, S.obs != 0 & sample_type %in% c("BAL", "Nasal", "Sputum", "Mock"))
phyloseq$phyloseq_rel <- subset_samples(phyloseq$phyloseq_rel, S.obs != 0 & sample_type %in% c("BAL", "Nasal", "Sputum", "Mock"))
# Prevalence filtering ---------------------------------------------------
phyloseq_unfiltered$phyloseq_rel <- transform_sample_counts(phyloseq_unfiltered$phyloseq_rel,
function(x){x/sum(x)})
taxa_qc <- data.frame("species" =
otu_table(
subset_samples(
phyloseq_unfiltered$phyloseq_rel,S.obs != 0 &
sample_type %in% c("Mock", "BAL", "Nasal", "Sputum"))) %>%
t() %>% colnames(),
"prevalence" =
ifelse(subset_samples(phyloseq_unfiltered$phyloseq_rel, S.obs != 0 &
sample_type %in% c("Mock", "BAL", "Nasal", "Sputum")) %>%
otu_table() > 0, 1, 0)%>%
t() %>%
colSums(), #Prevalence of taxa
"mean_rel_abd" =
subset_samples(phyloseq_unfiltered$phyloseq_rel,
S.obs != 0 & sample_type %in% c("Mock", "BAL", "Nasal", "Sputum")) %>%
otu_table() %>%
t() %>%
colMeans(na.rm = T) #mean relativ abundacne
)
function_qc <- data.frame("function" =
otu_table(
subset_samples(
phyloseq_unfiltered$phyloseq_path_rpk,
S.obs != 0 &
sample_type %in%
c("Mock", "BAL", "Nasal", "Sputum")
)
) %>%
t() %>%
colnames(),
"prevalence" =
ifelse(subset_samples(phyloseq_unfiltered$phyloseq_path_rpk,
S.obs != 0 &
sample_type %in%
c("Mock", "BAL", "Nasal", "Sputum")
) %>%
otu_table() > 0,
1,
0
) %>%
t() %>%
colSums(), #Prevalence of taxa
"mean_rpk" =
subset_samples(phyloseq_unfiltered$phyloseq_path_rpk,
S.obs != 0 &
sample_type %in%
c("Mock", "BAL", "Nasal", "Sputum")
) %>%
otu_table() %>%
t() %>%
colMeans(na.rm = T), #mean relativ abundacne
unidentified =
ifelse((subset_samples(phyloseq_unfiltered$phyloseq_path_rpk,
S.obs != 0 & sample_type %in% c("Mock", "BAL", "Nasal", "Sputum")) %>%
otu_table() > 0) %>%
row.names() %in% c("UNMAPPED", "UNINTEGRATED")
, 1, 0)
)
# Making a list of filters ------------------------------------------------
red_flag_taxa <- data.frame(species = taxa_qc$species,
prevalence = taxa_qc$prevalence,
mean_rel_abd = taxa_qc$mean_rel_abd,
red_flag_prev_abd =
ifelse(taxa_qc$prevalence <
otu_table(
subset_samples(
phyloseq_unfiltered$phyloseq_rel,
S.obs != 0 &
sample_type %in%
c("Mock", "BAL", "Nasal", "Sputum"))) %>%
t %>% rownames() %>%
length * 0.05 &
#Removing taxa with zero prevalence - taxa from nasal swabs
taxa_qc$mean_rel_abd <
taxa_qc %>%
subset(., .$prevalence != 0) %>%
.$mean_rel_abd %>%
quantile(., 0.75), 1,0),
red_flag_prev =
ifelse(taxa_qc$prevalence <
otu_table(
subset_samples(
phyloseq_unfiltered$phyloseq_rel,
S.obs != 0 &
sample_type %in%
c("Mock", "BAL", "Nasal", "Sputum"))) %>%
t %>% rownames() %>%
length * 0.05,
1,
0)) %>%
mutate(red_flag_decontam = species %in% (contaminants$Taxa %>% unique()))
subset(red_flag_taxa, red_flag_taxa$red_flag_prev == 1 & red_flag_taxa$red_flag_prev_abd == 0)#Unampped function were removed
red_flag_function <-
data.frame(function. = function_qc$function.,
prevalence = function_qc$prevalence,
mean_rel_abd = function_qc$mean_rpk,
red_flag_prev_abd =
ifelse(function_qc$prevalence <
otu_table(
subset_samples(
phyloseq_unfiltered$phyloseq_path_rpk,
S.obs != 0 &
sample_type %in%
c("Mock", "BAL", "Nasal", "Sputum"))) %>%
t %>%
rownames() %>%
length * 0.05 &
#Removing taxa with zero prevalence - taxa from nasal swabs
function_qc$mean_rpk <
function_qc %>%
subset(., .$prevalence != 0) %>%
.$mean_rpk %>%
quantile(., 0.75), 1,0),
red_flag_prev =
ifelse(function_qc$prevalence <
otu_table(
subset_samples(
phyloseq_unfiltered$phyloseq_path_rpk,
S.obs != 0 &
sample_type %in%
c("Mock", "BAL", "Nasal", "Sputum"))) %>%
t %>%
rownames() %>%
length * 0.05,
1,
0)) %>%
mutate(red_flag_prev_abd = case_when(function. %in% c("UNMAPPED", "UNINTEGRATED") ~ 1,
.default = red_flag_prev_abd))
subset(red_flag_function, red_flag_function$red_flag_prev == 1 & red_flag_function$red_flag_prev_abd == 0)# Adding variables for MaAsLin --------------------------------------------
sample_data(phyloseq$phyloseq_rel)$log10.Final_reads <- log10(sample_data(phyloseq$phyloseq_rel)$Final_reads)
sample_data(phyloseq$phyloseq_rel)$sampletype_treatment <- paste(sample_data(phyloseq$phyloseq_rel)$sample_type, sample_data(phyloseq$phyloseq_rel)$treatment, sep = ":")
sample_data(phyloseq$phyloseq_count)$log10.Final_reads <- log10(sample_data(phyloseq$phyloseq_count)$Final_reads)
sample_data(phyloseq$phyloseq_count)$log10.Final_reads <- log10(sample_data(phyloseq$phyloseq_count)$Final_reads)
sample_data(phyloseq$phyloseq_path_rpk)$log10.Final_reads <- log10(sample_data(phyloseq$phyloseq_path_rpk)$Final_reads)
sample_data(phyloseq$phyloseq_path_rpk)$sampletype_treatment <- paste(sample_data(phyloseq$phyloseq_path_rpk)$sample_type, sample_data(phyloseq$phyloseq_path_rpk)$treatment, sep = ":")
# Making new phyloseq object ----------------------------------------------
phyloseq$phyloseq_count_filtered <- prune_taxa(subset(red_flag_taxa,
red_flag_taxa$red_flag_prev_abd != 1)$species,
phyloseq$phyloseq_count)
phyloseq$phyloseq_path_rpk_filtered <- prune_taxa(subset(red_flag_taxa, red_flag_function$red_flag_prev_abd != 1)$function., phyloseq$phyloseq_path_rpk)
phyloseq$phyloseq_rel_filtered <- prune_taxa(subset(red_flag_taxa,
red_flag_taxa$red_flag_prev_abd != 1)$species,
phyloseq$phyloseq_rel) %>%
transform_sample_counts(., function (x) {x/sum(x)})Running MaAslin (as a comparison group)
Description
I am going to run MaAslin, but in this thread, MaAsLin showed different result with a CLR transformed data tested with GLM. https://forum.biobakery.org/t/different-results-running-glm-and-maaslin2-using-same-methods-transformations/1327/3
MaAslin with CLR (BAL)
#Running maaslin to compare with for-loop
#for bal
capture.output(
maaslin_all2 =
Maaslin2(input_data = subset_samples(phyloseq$phyloseq_count_filtered, sample_type == "BAL") %>%
otu_table %>% t %>% data.frame(),
input_metadata = subset_samples(phyloseq$phyloseq_count_filtered, sample_type == "BAL") %>%
sample_data %>% data.frame(check.names = F),
output = "/Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw",
fixed_effects = c("lypma", "benzonase", "host_zero", "molysis", "qiaamp"),
transform = "NONE",
# CLR does the normalization and transformation at once.
#https://forum.biobakery.org/t/questions-about-normalization-method-clr-vs-tss/4352/2
normalization = "CLR",
random_effects = c("subject_id"),
#reference = c("sample_type,BAL"),
plot_heatmap = F,
plot_scatter = F))## [1] "[1] \"Warning: Deleting existing log file: /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/maaslin2.log\""
## [2] "2023-10-25 21:20:16.400182 INFO::Writing function arguments to log file"
## [3] "2023-10-25 21:20:16.418704 INFO::Verifying options selected are valid"
## [4] "2023-10-25 21:20:16.460691 INFO::Determining format of input files"
## [5] "2023-10-25 21:20:16.461429 INFO::Input format is data samples as rows and metadata samples as rows"
## [6] "2023-10-25 21:20:16.465605 INFO::Formula for random effects: expr ~ (1 | subject_id)"
## [7] "2023-10-25 21:20:16.466404 INFO::Formula for fixed effects: expr ~ lypma + benzonase + host_zero + molysis + qiaamp"
## [8] "2023-10-25 21:20:16.46711 INFO::Filter data based on min abundance and min prevalence"
## [9] "2023-10-25 21:20:16.467731 INFO::Total samples in data: 28"
## [10] "2023-10-25 21:20:16.46833 INFO::Min samples required with min abundance for a feature not to be filtered: 2.800000"
## [11] "2023-10-25 21:20:16.471048 INFO::Total filtered features: 149"
## [12] "2023-10-25 21:20:16.471796 INFO::Filtered feature names from abundance and prevalence filtering: Actinobaculum_sp_oral_taxon_183, Actinomyces_georgiae, Actinomyces_graevenitzii, Actinomyces_hongkongensis, Actinomyces_johnsonii, Actinomyces_massiliensis, Actinomyces_meyeri, Actinomyces_oris, Actinomyces_sp_HMSC035G02, Actinomyces_sp_ICM47, Actinomyces_sp_oral_taxon_170, Actinomyces_sp_oral_taxon_180, Actinomyces_sp_oral_taxon_414, Actinomyces_sp_oral_taxon_448, Actinomyces_sp_oral_taxon_897, Actinomyces_viscosus, Aeriscardovia_aeriphila, Alloscardovia_omnicolens, Bifidobacterium_dentium, Bifidobacterium_longum, Corynebacterium_accolens, Corynebacterium_atypicum, Corynebacterium_durum, Corynebacterium_matruchotii, Corynebacterium_pseudodiphtheriticum, Corynebacterium_pseudogenitalium, Rothia_aeria, Rothia_dentocariosa, Cutibacterium_granulosum, Propionibacterium_humerusii, Propionibacterium_namnetense, Propionibacterium_acidifaciens, Pseudopropionibacterium_propionicum, Olsenella_profusa, Olsenella_uli, Collinsella_aerofaciens, Collinsella_intestinalis, Collinsella_stercoris, Enorma_massiliensis, X.Collinsella._massiliensis, Asaccharobacter_celatus, Denitrobacterium_detoxificans, Enterorhabdus_caecimuris, Slackia_exigua, Slackia_isoflavoniconvertens, Rubrobacter_radiotolerans, Thermoleophilum_album, Porphyromonas_endodontalis, Porphyromonas_somerae, Prevotella_histicola, Kouleothrix_aurantiaca, Hydrogenibacillus_schlegelii, Brochothrix_campestris, Abiotrophia_defectiva, Abiotrophia_sp_HMSC24B09, Dolosigranulum_pigrum, Granulicatella_adiacens, Granulicatella_elegans, Lactobacillus_rhamnosus, Streptococcus_australis, Streptococcus_cristatus, Streptococcus_gordonii, Streptococcus_infantis, Streptococcus_milleri, Streptococcus_peroris, Streptococcus_pseudopneumoniae, Streptococcus_salivarius, Streptococcus_sanguinis, Streptococcus_sp_A12, Streptococcus_sp_F0442, Streptococcus_sp_HMSC034E03, Streptococcus_sp_HMSC067H01, Streptococcus_sp_HMSC071D03, Streptococcus_sp_HPH0090, Streptococcus_sp_M334, Streptococcus_vestibularis, Eubacterium_brachy, Eubacterium_nodatum, Eubacterium_sulci, Mogibacterium_diversum, Mogibacterium_pumilum, Mogibacterium_timidum, Lachnoanaerobaculum_saburreum, Oribacterium_parvum, Oribacterium_sinus, Oribacterium_sp_oral_taxon_078, Stomatobaculum_longum, Solobacterium_moorei, Limnochorda_pilosa, Veillonella_atypica, Veillonella_dispar, Veillonella_infantium, Veillonella_sp_T11011_6, Anaerococcus_nagyae, Parvimonas_sp_oral_taxon_110, Parvimonas_sp_oral_taxon_393, Leptotrichia_wadei, Gemmata_obscuriglobus, Paludisphaera_borealis, Achromobacter_xylosoxidans, Anaerobiospirillum_thomasii, Cardiobacterium_hominis, Alkalilimnicola_ehrlichii, Escherichia_coli, Thiohalorhabdus_denitrificans, Pseudomonas_aeruginosa, Acholeplasma_oculi, Malassezia_restricta, Nakamurella_silvestris, Prevotella_pallens, Tannerella_sp_oral_taxon_808, Tannerella_sp_oral_taxon_HOT_286, Capnocytophaga_gingivalis, Bacillus_ginsengihumi, Listeria_floridensis, Agitococcus_lubricus, Lactobacillus_gasseri, Sharpea_azabuensis, Streptococcus_mutans, Oribacterium_asaccharolyticum, Neisseria_subflava, Stenotrophomonas_maltophilia, Stenotrophomonas_pavanii, Stenotrophomonas_rhizophila, Bacillus_intestinalis, Listeria_innocua, Listeria_monocytogenes, Streptococcus_sobrinus, Eggerthia_catenaformis, Leptotrichia_sp_oral_taxon_498, Rickettsia_felis, Haemophilus_parainfluenzae, Nannocystis_exedens, Franconibacter_helveticus, Klebsiella_pneumoniae, Salmonella_enterica, Superficieibacter_electus, Pseudomonas_fluorescens, Saccharomyces_cerevisiae, S._cerevisiae.x.S._kudriavzevii, Saccharomyces_kudriavzevii, Cryptococcus_gattii_VGI, Cryptococcus_gattii_VGII, Cryptococcus_gattii_VGIII, Cryptococcus_neoformans, Listeria_marthii, Erwinia_persicina, Pseudomonas_formosensis, Pseudomonas_putida"
## [13] "2023-10-25 21:20:16.473755 INFO::Total filtered features with variance filtering: 0"
## [14] "2023-10-25 21:20:16.474342 INFO::Filtered feature names from variance filtering:"
## [15] "2023-10-25 21:20:16.474977 INFO::Running selected normalization method: CLR"
## [16] "2023-10-25 21:20:16.554681 INFO::Applying z-score to standardize continuous metadata"
## [17] "2023-10-25 21:20:16.5676 INFO::Running selected transform method: NONE"
## [18] "2023-10-25 21:20:16.568403 INFO::Running selected analysis method: LM"
## [19] "2023-10-25 21:20:16.57649 INFO::Fitting model to feature number 1, Actinomyces_naeslundii"
## [20] "2023-10-25 21:20:16.648678 INFO::Fitting model to feature number 2, Actinomyces_odontolyticus"
## [21] "2023-10-25 21:20:16.690568 INFO::Fitting model to feature number 3, Actinomyces_sp_HPA0247"
## [22] "2023-10-25 21:20:16.740839 INFO::Fitting model to feature number 4, Actinomyces_sp_S6_Spd3"
## [23] "2023-10-25 21:20:16.777841 INFO::Fitting model to feature number 5, Actinomyces_sp_oral_taxon_181"
## [24] "2023-10-25 21:20:16.815105 INFO::Fitting model to feature number 6, Scardovia_wiggsiae"
## [25] "2023-10-25 21:20:16.852184 INFO::Fitting model to feature number 7, Corynebacterium_tuberculostearicum"
## [26] "2023-10-25 21:20:16.88876 INFO::Fitting model to feature number 8, Rothia_mucilaginosa"
## [27] "2023-10-25 21:20:16.926367 INFO::Fitting model to feature number 9, Cutibacterium_acnes"
## [28] "2023-10-25 21:20:16.96465 INFO::Fitting model to feature number 10, Atopobium_deltae"
## [29] "2023-10-25 21:20:17.002847 INFO::Fitting model to feature number 11, Atopobium_parvulum"
## [30] "2023-10-25 21:20:17.049372 INFO::Fitting model to feature number 12, Atopobium_rimae"
## [31] "2023-10-25 21:20:17.087044 INFO::Fitting model to feature number 13, Olsenella_scatoligenes"
## [32] "2023-10-25 21:20:17.124687 INFO::Fitting model to feature number 14, Prevotella_melaninogenica"
## [33] "2023-10-25 21:20:17.162164 INFO::Fitting model to feature number 15, Prevotella_oris"
## [34] "2023-10-25 21:20:17.198999 INFO::Fitting model to feature number 16, Gemella_asaccharolytica"
## [35] "2023-10-25 21:20:17.235803 INFO::Fitting model to feature number 17, Gemella_bergeri"
## [36] "2023-10-25 21:20:17.274294 INFO::Fitting model to feature number 18, Gemella_haemolysans"
## [37] "2023-10-25 21:20:17.312054 INFO::Fitting model to feature number 19, Gemella_morbillorum"
## [38] "2023-10-25 21:20:17.350076 INFO::Fitting model to feature number 20, Gemella_sanguinis"
## [39] "2023-10-25 21:20:17.440535 INFO::Fitting model to feature number 21, Staphylococcus_argenteus"
## [40] "2023-10-25 21:20:17.47884 INFO::Fitting model to feature number 22, Staphylococcus_aureus"
## [41] "2023-10-25 21:20:17.516256 INFO::Fitting model to feature number 23, Staphylococcus_epidermidis"
## [42] "2023-10-25 21:20:17.553813 INFO::Fitting model to feature number 24, Staphylococcus_schweitzeri"
## [43] "2023-10-25 21:20:17.592309 INFO::Fitting model to feature number 25, Enterococcus_faecalis"
## [44] "2023-10-25 21:20:17.631256 INFO::Fitting model to feature number 26, Streptococcus_anginosus"
## [45] "2023-10-25 21:20:17.670797 INFO::Fitting model to feature number 27, Streptococcus_mitis"
## [46] "2023-10-25 21:20:17.711048 INFO::Fitting model to feature number 28, Streptococcus_oralis"
## [47] "2023-10-25 21:20:17.753737 INFO::Fitting model to feature number 29, Streptococcus_parasanguinis"
## [48] "2023-10-25 21:20:17.800559 INFO::Fitting model to feature number 30, Streptococcus_pneumoniae"
## [49] "2023-10-25 21:20:17.852489 INFO::Fitting model to feature number 31, Eubacterium_infirmum"
## [50] "2023-10-25 21:20:17.894493 INFO::Fitting model to feature number 32, Peptostreptococcus_stomatis"
## [51] "2023-10-25 21:20:17.933918 INFO::Fitting model to feature number 33, Bulleidia_extructa"
## [52] "2023-10-25 21:20:17.974763 INFO::Fitting model to feature number 34, Veillonella_parvula"
## [53] "2023-10-25 21:20:18.015398 INFO::Fitting model to feature number 35, Finegoldia_magna"
## [54] "2023-10-25 21:20:18.056172 INFO::Fitting model to feature number 36, Parvimonas_micra"
## [55] "2023-10-25 21:20:18.095883 INFO::Fitting model to feature number 37, Fusobacterium_nucleatum"
## [56] "2023-10-25 21:20:18.141934 INFO::Fitting model to feature number 38, Cupriavidus_sp"
## [57] "2023-10-25 21:20:18.179684 INFO::Fitting model to feature number 39, Sutterella_parvirubra"
## [58] "2023-10-25 21:20:18.216951 INFO::Fitting model to feature number 40, Cardiobacterium_valvarum"
## [59] "2023-10-25 21:20:18.254854 INFO::Fitting model to feature number 41, Candida_albicans"
## [60] "2023-10-25 21:20:18.29325 INFO::Fitting model to feature number 42, Candida_dubliniensis"
## [61] "2023-10-25 21:20:18.330859 INFO::Fitting model to feature number 43, Candida_parapsilosis"
## [62] "2023-10-25 21:20:18.369789 INFO::Fitting model to feature number 44, Alloprevotella_tannerae"
## [63] "2023-10-25 21:20:18.40838 INFO::Fitting model to feature number 45, Prevotella_jejuni"
## [64] "2023-10-25 21:20:18.447098 INFO::Fitting model to feature number 46, Prevotella_salivae"
## [65] "2023-10-25 21:20:18.493296 INFO::Fitting model to feature number 47, Prevotella_sp_oral_taxon_306"
## [66] "2023-10-25 21:20:18.531704 INFO::Fitting model to feature number 48, Prevotella_veroralis"
## [67] "2023-10-25 21:20:18.569661 INFO::Fitting model to feature number 49, Lactobacillus_fermentum"
## [68] "2023-10-25 21:20:18.607905 INFO::Fitting model to feature number 50, Megasphaera_micronuciformis"
## [69] "2023-10-25 21:20:18.645258 INFO::Fitting model to feature number 51, Neisseria_flavescens"
## [70] "2023-10-25 21:20:18.692141 INFO::Fitting model to feature number 52, Staphylococcus_haemolyticus"
## [71] "2023-10-25 21:20:18.747654 INFO::Fitting model to feature number 53, Candida_orthopsilosis"
## [72] "2023-10-25 21:20:18.788368 INFO::Fitting model to feature number 54, Campylobacter_concisus"
## [73] "2023-10-25 21:20:18.852558 INFO::Counting total values for each feature"
## [74] "2023-10-25 21:20:18.861351 INFO::Writing filtered data to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/features/filtered_data.tsv"
## [75] "2023-10-25 21:20:18.864899 INFO::Writing filtered, normalized data to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/features/filtered_data_norm.tsv"
## [76] "2023-10-25 21:20:18.867942 INFO::Writing filtered, normalized, transformed data to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/features/filtered_data_norm_transformed.tsv"
## [77] "2023-10-25 21:20:18.871057 WARNING::Deleting existing residuals file: /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/residuals.rds"
## [78] "2023-10-25 21:20:18.872214 INFO::Writing residuals to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/residuals.rds"
## [79] "2023-10-25 21:20:18.873672 WARNING::Deleting existing fitted file: /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/fitted.rds"
## [80] "2023-10-25 21:20:18.874773 INFO::Writing fitted values to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/fitted.rds"
## [81] "2023-10-25 21:20:18.876229 WARNING::Deleting existing ranef file: /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/ranef.rds"
## [82] "2023-10-25 21:20:18.877318 INFO::Writing extracted random effects to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/ranef.rds"
## [83] "2023-10-25 21:20:18.87859 INFO::Writing all results to file (ordered by increasing q-values): /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/all_results.tsv"
## [84] "2023-10-25 21:20:18.88196 INFO::Writing the significant results (those which are less than or equal to the threshold of 0.250000 ) to file (ordered by increasing q-values): /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/significant_results.tsv"
## [85] "$results"
## [86] " feature metadata value coef"
## [87] "1 Cupriavidus_sp host_zero host_zero 2.6584944108"
## [88] "2 Cupriavidus_sp benzonase benzonase 2.4299712395"
## [89] "3 Cupriavidus_sp qiaamp qiaamp 2.4153022263"
## [90] "4 Cupriavidus_sp molysis molysis 2.1949447273"
## [91] "5 Prevotella_sp_oral_taxon_306 molysis molysis -0.6878478390"
## [92] "6 Prevotella_veroralis molysis molysis -0.6471534164"
## [93] "7 Prevotella_oris molysis molysis -0.7373436607"
## [94] "8 Cupriavidus_sp lypma lypma 1.5972427573"
## [95] "9 Prevotella_sp_oral_taxon_306 host_zero host_zero -0.4584171069"
## [96] "10 Actinomyces_odontolyticus qiaamp qiaamp -0.7746997032"
## [97] "11 Prevotella_oris host_zero host_zero -0.5032576985"
## [98] "12 Candida_albicans host_zero host_zero 1.8884717830"
## [99] "13 Candida_albicans qiaamp qiaamp 1.8362044121"
## [100] "14 Prevotella_sp_oral_taxon_306 qiaamp qiaamp -0.4131404328"
## [101] "15 Prevotella_veroralis host_zero host_zero -0.4116537801"
## [102] "16 Actinomyces_sp_HPA0247 qiaamp qiaamp -0.8158451759"
## [103] "17 Actinomyces_odontolyticus host_zero host_zero -0.6878906024"
## [104] "18 Actinomyces_sp_HPA0247 molysis molysis -0.7562620340"
## [105] "19 Olsenella_scatoligenes benzonase benzonase -0.4853405058"
## [106] "20 Gemella_asaccharolytica molysis molysis -0.4028081203"
## [107] "21 Gemella_haemolysans qiaamp qiaamp 1.0955615710"
## [108] "22 Candida_albicans benzonase benzonase 1.6810754680"
## [109] "23 Candida_albicans molysis molysis 1.6204316166"
## [110] "24 Prevotella_veroralis qiaamp qiaamp -0.3712383553"
## [111] "25 Enterococcus_faecalis lypma lypma -0.7294127168"
## [112] "26 Actinomyces_sp_HPA0247 host_zero host_zero -0.7204332172"
## [113] "27 Atopobium_deltae molysis molysis -0.3972976100"
## [114] "28 Prevotella_oris qiaamp qiaamp -0.3961630492"
## [115] "29 Staphylococcus_aureus molysis molysis -0.3957626602"
## [116] "30 Staphylococcus_haemolyticus molysis molysis -0.8011352125"
## [117] "31 Gemella_bergeri molysis molysis -0.4370496241"
## [118] "32 Finegoldia_magna lypma lypma -0.7462813636"
## [119] "33 Sutterella_parvirubra host_zero host_zero 1.3750973331"
## [120] "34 Actinomyces_odontolyticus benzonase benzonase -0.5702745448"
## [121] "35 Actinomyces_sp_HPA0247 benzonase benzonase -0.5819895282"
## [122] "36 Olsenella_scatoligenes host_zero host_zero -0.3813363935"
## [123] "37 Olsenella_scatoligenes qiaamp qiaamp -0.3816141511"
## [124] "38 Gemella_haemolysans molysis molysis 0.8537648024"
## [125] "39 Peptostreptococcus_stomatis lypma lypma -0.6415668322"
## [126] "40 Candida_dubliniensis lypma lypma 1.3748263995"
## [127] "41 Candida_dubliniensis host_zero host_zero 1.4439454973"
## [128] "42 Candida_dubliniensis qiaamp qiaamp 1.3827380695"
## [129] "43 Prevotella_sp_oral_taxon_306 lypma lypma -0.2754880755"
## [130] "44 Staphylococcus_argenteus molysis molysis -0.3478515582"
## [131] "45 Cardiobacterium_valvarum benzonase benzonase -0.8344255603"
## [132] "46 Enterococcus_faecalis molysis molysis -0.5570908897"
## [133] "47 Sutterella_parvirubra lypma lypma 1.0448192333"
## [134] "48 Cardiobacterium_valvarum host_zero host_zero -0.7955391793"
## [135] "49 Alloprevotella_tannerae host_zero host_zero -0.7225784090"
## [136] "50 Prevotella_sp_oral_taxon_306 benzonase benzonase -0.2616427591"
## [137] "51 Prevotella_veroralis lypma lypma -0.2367951638"
## [138] "52 Lactobacillus_fermentum molysis molysis -0.6474736866"
## [139] "53 Candida_orthopsilosis lypma lypma 1.1403171694"
## [140] "54 Alloprevotella_tannerae qiaamp qiaamp -0.6419296774"
## [141] "55 Candida_albicans lypma lypma 0.9648378864"
## [142] "56 Candida_dubliniensis benzonase benzonase 1.1445981344"
## [143] "57 Prevotella_melaninogenica lypma lypma -0.7314147579"
## [144] "58 Candida_dubliniensis molysis molysis 1.0962034876"
## [145] "59 Actinomyces_naeslundii benzonase benzonase -0.4000643011"
## [146] "60 Sutterella_parvirubra molysis molysis 0.9432203376"
## [147] "61 Candida_parapsilosis host_zero host_zero 1.0863675849"
## [148] "62 Corynebacterium_tuberculostearicum benzonase benzonase -0.4004108492"
## [149] "63 Prevotella_veroralis benzonase benzonase -0.2063306216"
## [150] "64 Actinomyces_naeslundii molysis molysis -0.3731092712"
## [151] "65 Actinomyces_odontolyticus molysis molysis -0.3778691060"
## [152] "66 Scardovia_wiggsiae molysis molysis -0.5060440645"
## [153] "67 Corynebacterium_tuberculostearicum molysis molysis -0.3717657106"
## [154] "68 Atopobium_deltae host_zero host_zero -0.2301157291"
## [155] "69 Gemella_morbillorum molysis molysis -0.2935236710"
## [156] "70 Eubacterium_infirmum molysis molysis 0.5722037108"
## [157] "71 Bulleidia_extructa benzonase benzonase -0.4015443797"
## [158] "72 Cardiobacterium_valvarum qiaamp qiaamp -0.5919921321"
## [159] "73 Candida_parapsilosis lypma lypma 0.9608853438"
## [160] "74 Candida_parapsilosis qiaamp qiaamp 0.9824286169"
## [161] "75 Megasphaera_micronuciformis molysis molysis 0.5296521646"
## [162] "76 Staphylococcus_haemolyticus qiaamp qiaamp -0.5002463198"
## [163] "77 Atopobium_parvulum lypma lypma -0.5498410441"
## [164] "78 Gemella_bergeri qiaamp qiaamp -0.2435347234"
## [165] "79 Streptococcus_anginosus molysis molysis 0.4973180075"
## [166] "80 Finegoldia_magna molysis molysis -0.4608793623"
## [167] "81 Sutterella_parvirubra qiaamp qiaamp 0.7778327306"
## [168] "82 Cardiobacterium_valvarum molysis molysis -0.5472191050"
## [169] "83 Alloprevotella_tannerae benzonase benzonase -0.4873051111"
## [170] "84 Staphylococcus_haemolyticus host_zero host_zero -0.4390201250"
## [171] "85 Prevotella_melaninogenica host_zero host_zero -0.5762401667"
## [172] "86 Streptococcus_parasanguinis host_zero host_zero -0.5806820642"
## [173] "87 Fusobacterium_nucleatum molysis molysis 0.5376565628"
## [174] "88 Actinomyces_sp_oral_taxon_181 benzonase benzonase -0.4348681528"
## [175] "89 Prevotella_oris benzonase benzonase -0.2033460448"
## [176] "90 Campylobacter_concisus molysis molysis 0.4625995145"
## [177] "91 Rothia_mucilaginosa molysis molysis 0.4127063169"
## [178] "92 Actinomyces_sp_oral_taxon_181 molysis molysis 0.3668490892"
## [179] "93 Scardovia_wiggsiae benzonase benzonase -0.4057286281"
## [180] "94 Rothia_mucilaginosa benzonase benzonase -0.3885009170"
## [181] "95 Cutibacterium_acnes lypma lypma 0.5532500229"
## [182] "96 Atopobium_deltae qiaamp qiaamp -0.1717423606"
## [183] "97 Atopobium_parvulum host_zero host_zero -0.4375315833"
## [184] "98 Atopobium_parvulum qiaamp qiaamp -0.4549595982"
## [185] "99 Atopobium_rimae molysis molysis 0.3667747809"
## [186] "100 Olsenella_scatoligenes molysis molysis -0.2096051466"
## [187] "101 Prevotella_melaninogenica qiaamp qiaamp -0.5243090066"
## [188] "102 Prevotella_oris lypma lypma -0.1568213040"
## [189] "103 Gemella_asaccharolytica host_zero host_zero -0.1473499303"
## [190] "104 Gemella_asaccharolytica qiaamp qiaamp -0.1524904669"
## [191] "105 Gemella_bergeri host_zero host_zero -0.1945177590"
## [192] "106 Staphylococcus_epidermidis benzonase benzonase -0.4015443797"
## [193] "107 Staphylococcus_schweitzeri benzonase benzonase 0.3460593936"
## [194] "108 Enterococcus_faecalis qiaamp qiaamp -0.2859727981"
## [195] "109 Streptococcus_pneumoniae molysis molysis -0.3940332438"
## [196] "110 Peptostreptococcus_stomatis molysis molysis -0.3706873638"
## [197] "111 Veillonella_parvula benzonase benzonase 0.2838877037"
## [198] "112 Parvimonas_micra molysis molysis -0.5084662540"
## [199] "113 Sutterella_parvirubra benzonase benzonase 0.6576456099"
## [200] "114 Candida_parapsilosis molysis molysis 0.6687430417"
## [201] "115 Prevotella_jejuni molysis molysis 0.3691203074"
## [202] "116 Prevotella_salivae molysis molysis 0.3555027186"
## [203] "117 Lactobacillus_fermentum host_zero host_zero -0.3357535460"
## [204] "118 Lactobacillus_fermentum qiaamp qiaamp -0.3762081504"
## [205] "119 Neisseria_flavescens benzonase benzonase 0.2814662871"
## [206] "120 Candida_orthopsilosis benzonase benzonase 0.6431152989"
## [207] "121 Candida_orthopsilosis host_zero host_zero 0.6112880819"
## [208] "122 Actinomyces_naeslundii lypma lypma -0.0923077546"
## [209] "123 Actinomyces_naeslundii host_zero host_zero -0.1268228387"
## [210] "124 Actinomyces_naeslundii qiaamp qiaamp -0.1805162611"
## [211] "125 Actinomyces_odontolyticus lypma lypma -0.0923077546"
## [212] "126 Actinomyces_sp_HPA0247 lypma lypma -0.0923077546"
## [213] "127 Actinomyces_sp_S6_Spd3 lypma lypma -0.0923077546"
## [214] "128 Actinomyces_sp_S6_Spd3 benzonase benzonase 0.2181346646"
## [215] "129 Actinomyces_sp_S6_Spd3 host_zero host_zero 0.0910528612"
## [216] "130 Actinomyces_sp_S6_Spd3 molysis molysis -0.1076618817"
## [217] "131 Actinomyces_sp_S6_Spd3 qiaamp qiaamp 0.0777935580"
## [218] "132 Actinomyces_sp_oral_taxon_181 lypma lypma -0.0923077546"
## [219] "133 Actinomyces_sp_oral_taxon_181 host_zero host_zero -0.2024317398"
## [220] "134 Actinomyces_sp_oral_taxon_181 qiaamp qiaamp 0.1151827417"
## [221] "135 Scardovia_wiggsiae lypma lypma -0.0923077546"
## [222] "136 Scardovia_wiggsiae host_zero host_zero -0.2476561206"
## [223] "137 Scardovia_wiggsiae qiaamp qiaamp -0.2831906187"
## [224] "138 Corynebacterium_tuberculostearicum lypma lypma -0.0923077546"
## [225] "139 Corynebacterium_tuberculostearicum host_zero host_zero -0.0977004338"
## [226] "140 Corynebacterium_tuberculostearicum qiaamp qiaamp -0.2006706580"
## [227] "141 Rothia_mucilaginosa lypma lypma -0.0923077546"
## [228] "142 Rothia_mucilaginosa host_zero host_zero 0.0758434283"
## [229] "143 Cutibacterium_acnes benzonase benzonase -0.3843426141"
## [230] "144 Cutibacterium_acnes qiaamp qiaamp -0.1720865001"
## [231] "145 Atopobium_deltae lypma lypma -0.0923077546"
## [232] "146 Atopobium_rimae lypma lypma -0.0923077546"
## [233] "147 Atopobium_rimae benzonase benzonase 0.0857856011"
## [234] "148 Olsenella_scatoligenes lypma lypma -0.0923077546"
## [235] "149 Prevotella_melaninogenica benzonase benzonase -0.3942909486"
## [236] "150 Gemella_asaccharolytica lypma lypma -0.0923077546"
## [237] "151 Gemella_asaccharolytica benzonase benzonase -0.0706768253"
## [238] "152 Gemella_bergeri lypma lypma -0.0923077546"
## [239] "153 Gemella_bergeri benzonase benzonase 0.1192002609"
## [240] "154 Gemella_haemolysans lypma lypma -0.0923077546"
## [241] "155 Gemella_haemolysans benzonase benzonase 0.2731506015"
## [242] "156 Gemella_haemolysans host_zero host_zero 0.3030450746"
## [243] "157 Gemella_morbillorum lypma lypma -0.0923077546"
## [244] "158 Gemella_morbillorum benzonase benzonase 0.0437437273"
## [245] "159 Gemella_sanguinis lypma lypma -0.0923077546"
## [246] "160 Gemella_sanguinis benzonase benzonase 0.2296443659"
## [247] "161 Gemella_sanguinis host_zero host_zero 0.1637137856"
## [248] "162 Gemella_sanguinis molysis molysis -0.1395300340"
## [249] "163 Gemella_sanguinis qiaamp qiaamp 0.1433744204"
## [250] "164 Staphylococcus_argenteus lypma lypma -0.0923077546"
## [251] "165 Staphylococcus_argenteus host_zero host_zero -0.0387937995"
## [252] "166 Staphylococcus_argenteus qiaamp qiaamp -0.0506522734"
## [253] "167 Staphylococcus_aureus lypma lypma -0.1435849765"
## [254] "168 Staphylococcus_aureus benzonase benzonase -0.0598724577"
## [255] "169 Staphylococcus_aureus host_zero host_zero -0.0876343520"
## [256] "170 Staphylococcus_aureus qiaamp qiaamp -0.0996999805"
## [257] "171 Staphylococcus_epidermidis lypma lypma -0.0923077546"
## [258] "172 Staphylococcus_epidermidis host_zero host_zero 0.0966052445"
## [259] "173 Staphylococcus_epidermidis molysis molysis -0.2009702384"
## [260] "174 Staphylococcus_epidermidis qiaamp qiaamp 0.0961323767"
## [261] "175 Staphylococcus_schweitzeri lypma lypma -0.0923077546"
## [262] "176 Staphylococcus_schweitzeri host_zero host_zero 0.2902589986"
## [263] "177 Staphylococcus_schweitzeri qiaamp qiaamp 0.2801312413"
## [264] "178 Enterococcus_faecalis benzonase benzonase -0.1860192989"
## [265] "179 Enterococcus_faecalis host_zero host_zero -0.2569807327"
## [266] "180 Streptococcus_anginosus lypma lypma -0.2574388698"
## [267] "181 Streptococcus_anginosus benzonase benzonase -0.2661458128"
## [268] "182 Streptococcus_anginosus host_zero host_zero 0.2450491312"
## [269] "183 Streptococcus_anginosus qiaamp qiaamp 0.2272217651"
## [270] "184 Streptococcus_mitis lypma lypma -0.1190524385"
## [271] "185 Streptococcus_mitis benzonase benzonase -0.2436113903"
## [272] "186 Streptococcus_mitis host_zero host_zero -0.3311154255"
## [273] "187 Streptococcus_mitis qiaamp qiaamp -0.3443219492"
## [274] "188 Streptococcus_oralis lypma lypma -0.0943279564"
## [275] "189 Streptococcus_oralis benzonase benzonase -0.2722506826"
## [276] "190 Streptococcus_oralis host_zero host_zero -0.3435905714"
## [277] "191 Streptococcus_oralis qiaamp qiaamp -0.3774961480"
## [278] "192 Streptococcus_parasanguinis lypma lypma -0.0923077546"
## [279] "193 Streptococcus_parasanguinis benzonase benzonase -0.3609242980"
## [280] "194 Streptococcus_parasanguinis molysis molysis -0.1567691137"
## [281] "195 Streptococcus_parasanguinis qiaamp qiaamp -0.4164937882"
## [282] "196 Streptococcus_pneumoniae benzonase benzonase -0.1208288528"
## [283] "197 Streptococcus_pneumoniae host_zero host_zero -0.2146934179"
## [284] "198 Streptococcus_pneumoniae qiaamp qiaamp -0.2430157567"
## [285] "199 Eubacterium_infirmum lypma lypma -0.0923077546"
## [286] "200 Eubacterium_infirmum benzonase benzonase 0.0819455015"
## [287] "201 Peptostreptococcus_stomatis host_zero host_zero -0.0878263864"
## [288] "202 Peptostreptococcus_stomatis qiaamp qiaamp -0.0985936288"
## [289] "203 Bulleidia_extructa lypma lypma -0.0923077546"
## [290] "204 Bulleidia_extructa molysis molysis 0.0813228279"
## [291] "205 Bulleidia_extructa qiaamp qiaamp -0.0667013060"
## [292] "206 Veillonella_parvula lypma lypma -0.0923077546"
## [293] "207 Veillonella_parvula host_zero host_zero 0.1759259321"
## [294] "208 Veillonella_parvula qiaamp qiaamp 0.1036449230"
## [295] "209 Finegoldia_magna benzonase benzonase -0.0975568885"
## [296] "210 Finegoldia_magna host_zero host_zero -0.1534110102"
## [297] "211 Finegoldia_magna qiaamp qiaamp -0.1768408693"
## [298] "212 Parvimonas_micra lypma lypma -0.0923077546"
## [299] "213 Parvimonas_micra benzonase benzonase -0.3971734683"
## [300] "214 Parvimonas_micra host_zero host_zero -0.1484163127"
## [301] "215 Parvimonas_micra qiaamp qiaamp -0.1395480875"
## [302] "216 Fusobacterium_nucleatum lypma lypma -0.0923077546"
## [303] "217 Fusobacterium_nucleatum benzonase benzonase 0.1658086169"
## [304] "218 Fusobacterium_nucleatum qiaamp qiaamp -0.0967856926"
## [305] "219 Cardiobacterium_valvarum lypma lypma -0.0923077546"
## [306] "220 Candida_parapsilosis benzonase benzonase 0.5447463513"
## [307] "221 Alloprevotella_tannerae lypma lypma -0.1957681313"
## [308] "222 Alloprevotella_tannerae molysis molysis -0.1744719504"
## [309] "223 Prevotella_jejuni lypma lypma -0.0923077546"
## [310] "224 Prevotella_jejuni host_zero host_zero -0.2134182505"
## [311] "225 Prevotella_salivae lypma lypma -0.0923077546"
## [312] "226 Prevotella_salivae benzonase benzonase 0.1653666161"
## [313] "227 Prevotella_salivae host_zero host_zero -0.3151211027"
## [314] "228 Lactobacillus_fermentum lypma lypma 0.1686006749"
## [315] "229 Lactobacillus_fermentum benzonase benzonase -0.2048134283"
## [316] "230 Megasphaera_micronuciformis lypma lypma -0.0923077546"
## [317] "231 Megasphaera_micronuciformis benzonase benzonase 0.2511160820"
## [318] "232 Megasphaera_micronuciformis host_zero host_zero 0.1077250076"
## [319] "233 Megasphaera_micronuciformis qiaamp qiaamp 0.0961278934"
## [320] "234 Neisseria_flavescens lypma lypma -0.0923077546"
## [321] "235 Neisseria_flavescens molysis molysis -0.1655031057"
## [322] "236 Neisseria_flavescens qiaamp qiaamp 0.0564456238"
## [323] "237 Staphylococcus_haemolyticus benzonase benzonase -0.2809064826"
## [324] "238 Candida_orthopsilosis molysis molysis 0.1768690197"
## [325] "239 Candida_orthopsilosis qiaamp qiaamp 0.4816179948"
## [326] "240 Campylobacter_concisus lypma lypma -0.0923077546"
## [327] "241 Campylobacter_concisus benzonase benzonase 0.2230445097"
## [328] "242 Campylobacter_concisus host_zero host_zero -0.1027382036"
## [329] "243 Cutibacterium_acnes molysis molysis 0.1048432500"
## [330] "244 Prevotella_jejuni qiaamp qiaamp -0.0690850455"
## [331] "245 Rothia_mucilaginosa qiaamp qiaamp 0.0451055510"
## [332] "246 Cutibacterium_acnes host_zero host_zero 0.0582860513"
## [333] "247 Atopobium_deltae benzonase benzonase 0.0222505615"
## [334] "248 Atopobium_parvulum benzonase benzonase 0.0442473465"
## [335] "249 Atopobium_parvulum molysis molysis 0.0300934390"
## [336] "250 Prevotella_melaninogenica molysis molysis 0.0327325171"
## [337] "251 Gemella_morbillorum qiaamp qiaamp 0.0191216646"
## [338] "252 Staphylococcus_schweitzeri molysis molysis -0.0177904534"
## [339] "253 Streptococcus_mitis molysis molysis 0.0330076126"
## [340] "254 Streptococcus_oralis molysis molysis 0.0280396111"
## [341] "255 Streptococcus_pneumoniae lypma lypma -0.0303146258"
## [342] "256 Eubacterium_infirmum host_zero host_zero 0.0221964491"
## [343] "257 Eubacterium_infirmum qiaamp qiaamp 0.0300742736"
## [344] "258 Peptostreptococcus_stomatis benzonase benzonase -0.0503586652"
## [345] "259 Bulleidia_extructa host_zero host_zero -0.0259662605"
## [346] "260 Veillonella_parvula molysis molysis -0.0378083928"
## [347] "261 Prevotella_jejuni benzonase benzonase 0.0187481494"
## [348] "262 Neisseria_flavescens host_zero host_zero 0.0362043817"
## [349] "263 Staphylococcus_haemolyticus lypma lypma -0.0351308379"
## [350] "264 Campylobacter_concisus qiaamp qiaamp -0.0463118431"
## [351] "265 Atopobium_rimae host_zero host_zero -0.0006319988"
## [352] "266 Atopobium_rimae qiaamp qiaamp -0.0007130714"
## [353] "267 Gemella_morbillorum host_zero host_zero -0.0051392315"
## [354] "268 Staphylococcus_argenteus benzonase benzonase 0.0041519897"
## [355] "269 Fusobacterium_nucleatum host_zero host_zero -0.0013498741"
## [356] "270 Prevotella_salivae qiaamp qiaamp 0.0025836092"
## [357] " stderr pval name qval N N.not.zero"
## [358] "1 0.4548071 1.511605e-05 host_zero 0.004081334 28 25"
## [359] "2 0.4548071 4.356930e-05 benzonase 0.004201181 28 25"
## [360] "3 0.4548071 4.667979e-05 qiaamp 0.004201181 28 25"
## [361] "4 0.4548071 1.332480e-04 molysis 0.008994239 28 25"
## [362] "5 0.1599261 4.294861e-04 molysis 0.023192251 28 6"
## [363] "6 0.1555494 5.870044e-04 molysis 0.026415200 28 6"
## [364] "7 0.1924575 1.221470e-03 molysis 0.047113862 28 6"
## [365] "8 0.4324727 1.657614e-03 lypma 0.055944477 28 25"
## [366] "9 0.1599261 1.025704e-02 host_zero 0.307711113 28 6"
## [367] "10 0.3030538 1.984450e-02 qiaamp 0.357200934 28 4"
## [368] "11 0.1924575 1.753124e-02 host_zero 0.357200934 28 6"
## [369] "12 0.6952557 1.412270e-02 host_zero 0.357200934 28 9"
## [370] "13 0.6952557 1.656480e-02 qiaamp 0.357200934 28 9"
## [371] "14 0.1599261 1.873762e-02 qiaamp 0.357200934 28 6"
## [372] "15 0.1555494 1.640582e-02 host_zero 0.357200934 28 6"
## [373] "16 0.3263995 2.233696e-02 qiaamp 0.376936256 28 4"
## [374] "17 0.3030538 3.574886e-02 host_zero 0.405472705 28 4"
## [375] "18 0.3263995 3.249888e-02 molysis 0.405472705 28 4"
## [376] "19 0.2126372 3.476219e-02 benzonase 0.405472705 28 1"
## [377] "20 0.1782140 3.604202e-02 molysis 0.405472705 28 0"
## [378] "21 0.4621195 2.924699e-02 qiaamp 0.405472705 28 8"
## [379] "22 0.6952557 2.639165e-02 benzonase 0.405472705 28 9"
## [380] "23 0.6952557 3.155127e-02 molysis 0.405472705 28 9"
## [381] "24 0.1555494 2.818215e-02 qiaamp 0.405472705 28 6"
## [382] "25 0.3259519 3.809818e-02 lypma 0.411460359 28 5"
## [383] "26 0.3263995 4.053064e-02 host_zero 0.420895075 28 4"
## [384] "27 0.1896494 5.011051e-02 molysis 0.488768044 28 1"
## [385] "28 0.1924575 5.430756e-02 qiaamp 0.488768044 28 6"
## [386] "29 0.1919822 5.399759e-02 molysis 0.488768044 28 6"
## [387] "30 0.3890355 5.421193e-02 molysis 0.488768044 28 6"
## [388] "31 0.2158635 5.741854e-02 molysis 0.500096924 28 1"
## [389] "32 0.3759432 6.256554e-02 lypma 0.511899909 28 5"
## [390] "33 0.6889797 6.109244e-02 host_zero 0.511899909 28 13"
## [391] "34 0.3030538 7.615461e-02 benzonase 0.591071188 28 4"
## [392] "35 0.3263995 9.146018e-02 benzonase 0.591071188 28 4"
## [393] "36 0.2126372 8.963283e-02 host_zero 0.591071188 28 1"
## [394] "37 0.2126372 8.941747e-02 qiaamp 0.591071188 28 1"
## [395] "38 0.4621195 8.134900e-02 molysis 0.591071188 28 8"
## [396] "39 0.3615809 9.289813e-02 lypma 0.591071188 28 5"
## [397] "40 0.7441715 8.116008e-02 lypma 0.591071188 28 10"
## [398] "41 0.7826351 8.147678e-02 host_zero 0.591071188 28 10"
## [399] "42 0.7826351 9.413356e-02 qiaamp 0.591071188 28 10"
## [400] "43 0.1519453 8.652757e-02 lypma 0.591071188 28 6"
## [401] "44 0.2034839 1.045254e-01 molysis 0.627152300 28 6"
## [402] "45 0.4848514 1.024197e-01 benzonase 0.627152300 28 3"
## [403] "46 0.3427830 1.214112e-01 molysis 0.658726193 28 5"
## [404] "47 0.6562014 1.286666e-01 lypma 0.658726193 28 13"
## [405] "48 0.4848514 1.182233e-01 host_zero 0.658726193 28 3"
## [406] "49 0.4331180 1.124701e-01 host_zero 0.658726193 28 7"
## [407] "50 0.1599261 1.191876e-01 benzonase 0.658726193 28 6"
## [408] "51 0.1477846 1.264892e-01 lypma 0.658726193 28 6"
## [409] "52 0.4073204 1.293055e-01 molysis 0.658726193 28 6"
## [410] "53 0.7136284 1.274308e-01 lypma 0.658726193 28 5"
## [411] "54 0.4331180 1.555224e-01 qiaamp 0.777611858 28 7"
## [412] "55 0.6610554 1.616431e-01 lypma 0.779350677 28 9"
## [413] "56 0.7826351 1.607627e-01 benzonase 0.779350677 28 10"
## [414] "57 0.5074018 1.665231e-01 lypma 0.788793602 28 6"
## [415] "58 0.7826351 1.782362e-01 molysis 0.829720357 28 10"
## [416] "59 0.2927312 1.876333e-01 benzonase 0.830508202 28 0"
## [417] "60 0.6889797 1.876080e-01 molysis 0.830508202 28 13"
## [418] "61 0.7891379 1.853819e-01 host_zero 0.830508202 28 8"
## [419] "62 0.2975405 1.941559e-01 benzonase 0.845517444 28 1"
## [420] "63 0.1555494 2.012611e-01 benzonase 0.862547569 28 6"
## [421] "64 0.2927312 2.177743e-01 molysis 0.863802984 28 0"
## [422] "65 0.3030538 2.284390e-01 molysis 0.863802984 28 4"
## [423] "66 0.4198567 2.431445e-01 molysis 0.863802984 28 1"
## [424] "67 0.2975405 2.266005e-01 molysis 0.863802984 28 1"
## [425] "68 0.1896494 2.401661e-01 host_zero 0.863802984 28 1"
## [426] "69 0.2329785 2.234831e-01 molysis 0.863802984 28 4"
## [427] "70 0.4453146 2.146984e-01 molysis 0.863802984 28 5"
## [428] "71 0.3330628 2.407746e-01 benzonase 0.863802984 28 4"
## [429] "72 0.4848514 2.378702e-01 qiaamp 0.863802984 28 3"
## [430] "73 0.7506300 2.167218e-01 lypma 0.863802984 28 8"
## [431] "74 0.7891379 2.290041e-01 qiaamp 0.863802984 28 8"
## [432] "75 0.4366048 2.403718e-01 molysis 0.863802984 28 5"
## [433] "76 0.3890355 2.147644e-01 qiaamp 0.863802984 28 6"
## [434] "77 0.4614703 2.487860e-01 lypma 0.872366361 28 7"
## [435] "78 0.2158635 2.735034e-01 qiaamp 0.884734975 28 1"
## [436] "79 0.4371636 2.701272e-01 molysis 0.884734975 28 10"
## [437] "80 0.3953608 2.588669e-01 molysis 0.884734975 28 5"
## [438] "81 0.6889797 2.735329e-01 qiaamp 0.884734975 28 13"
## [439] "82 0.4848514 2.738924e-01 molysis 0.884734975 28 3"
## [440] "83 0.4331180 2.752509e-01 benzonase 0.884734975 28 7"
## [441] "84 0.3890355 2.739119e-01 host_zero 0.884734975 28 6"
## [442] "85 0.5326084 2.933463e-01 host_zero 0.910385057 28 6"
## [443] "86 0.5348119 2.919216e-01 host_zero 0.910385057 28 6"
## [444] "87 0.4898869 2.866216e-01 molysis 0.910385057 28 5"
## [445] "88 0.4115282 3.043584e-01 benzonase 0.914000026 28 4"
## [446] "89 0.1924575 3.046667e-01 benzonase 0.914000026 28 6"
## [447] "90 0.4342514 3.004917e-01 molysis 0.914000026 28 5"
## [448] "91 0.3980656 3.136038e-01 molysis 0.930472720 28 8"
## [449] "92 0.4115282 3.842403e-01 molysis 0.946215393 28 4"
## [450] "93 0.4198567 3.462156e-01 benzonase 0.946215393 28 1"
## [451] "94 0.3980656 3.420482e-01 benzonase 0.946215393 28 8"
## [452] "95 0.5883891 3.592998e-01 lypma 0.946215393 28 3"
## [453] "96 0.1896494 3.767370e-01 qiaamp 0.946215393 28 1"
## [454] "97 0.4832875 3.769373e-01 host_zero 0.946215393 28 7"
## [455] "98 0.4832875 3.586424e-01 qiaamp 0.946215393 28 7"
## [456] "99 0.3780045 3.444363e-01 molysis 0.946215393 28 5"
## [457] "100 0.2126372 3.372490e-01 molysis 0.946215393 28 1"
## [458] "101 0.5326084 3.377542e-01 qiaamp 0.946215393 28 6"
## [459] "102 0.1828612 4.023861e-01 lypma 0.946215393 28 6"
## [460] "103 0.1782140 4.188496e-01 host_zero 0.946215393 28 0"
## [461] "104 0.1782140 4.031021e-01 qiaamp 0.946215393 28 0"
## [462] "105 0.2158635 3.789837e-01 host_zero 0.946215393 28 1"
## [463] "106 0.4360875 3.671483e-01 benzonase 0.946215393 28 3"
## [464] "107 0.3841221 3.793773e-01 benzonase 0.946215393 28 4"
## [465] "108 0.3427830 4.150094e-01 qiaamp 0.946215393 28 5"
## [466] "109 0.4772137 4.197662e-01 molysis 0.946215393 28 6"
## [467] "110 0.3802257 3.424543e-01 molysis 0.946215393 28 5"
## [468] "111 0.3389606 4.131179e-01 benzonase 0.946215393 28 4"
## [469] "112 0.5215572 3.423366e-01 molysis 0.946215393 28 3"
## [470] "113 0.6889797 3.522911e-01 benzonase 0.946215393 28 13"
## [471] "114 0.7891379 4.077995e-01 molysis 0.946215393 28 8"
## [472] "115 0.4257060 3.974391e-01 molysis 0.946215393 28 3"
## [473] "116 0.4161283 4.040002e-01 molysis 0.946215393 28 4"
## [474] "117 0.4073204 4.205402e-01 host_zero 0.946215393 28 6"
## [475] "118 0.4073204 3.678805e-01 qiaamp 0.946215393 28 6"
## [476] "119 0.2936272 3.502605e-01 benzonase 0.946215393 28 4"
## [477] "120 0.7505253 4.027092e-01 benzonase 0.946215393 28 5"
## [478] "121 0.7505253 4.259556e-01 host_zero 0.950479443 28 5"
## [479] "122 0.2814847 7.466518e-01 lypma 0.957294941 28 0"
## [480] "123 0.2927312 6.697024e-01 host_zero 0.957294941 28 0"
## [481] "124 0.2927312 5.447516e-01 qiaamp 0.957294941 28 0"
## [482] "125 0.2879700 7.522523e-01 lypma 0.957294941 28 4"
## [483] "126 0.3101433 7.693991e-01 lypma 0.957294941 28 4"
## [484] "127 0.2873679 7.517356e-01 lypma 0.957294941 28 4"
## [485] "128 0.3013752 4.783450e-01 benzonase 0.957294941 28 4"
## [486] "129 0.3013752 7.659653e-01 host_zero 0.957294941 28 4"
## [487] "130 0.3013752 7.250038e-01 molysis 0.957294941 28 4"
## [488] "131 0.3013752 7.991895e-01 qiaamp 0.957294941 28 4"
## [489] "132 0.3921965 8.165657e-01 lypma 0.957294941 28 4"
## [490] "133 0.4115282 6.286223e-01 host_zero 0.957294941 28 4"
## [491] "134 0.4115282 7.826930e-01 qiaamp 0.957294941 28 4"
## [492] "135 0.4014876 8.207101e-01 lypma 0.957294941 28 1"
## [493] "136 0.4198567 5.623539e-01 host_zero 0.957294941 28 1"
## [494] "137 0.4198567 5.082608e-01 qiaamp 0.957294941 28 1"
## [495] "138 0.2862316 7.506992e-01 lypma 0.957294941 28 1"
## [496] "139 0.2975405 7.462142e-01 host_zero 0.957294941 28 1"
## [497] "140 0.2975405 5.081238e-01 qiaamp 0.957294941 28 1"
## [498] "141 0.3783913 8.100444e-01 lypma 0.957294941 28 8"
## [499] "142 0.3980656 8.510320e-01 host_zero 0.957294941 28 8"
## [500] "143 0.6137340 5.386761e-01 benzonase 0.957294941 28 3"
## [501] "144 0.6137340 7.822329e-01 qiaamp 0.957294941 28 3"
## [502] "145 0.1814256 6.170147e-01 lypma 0.957294941 28 1"
## [503] "146 0.3612884 8.012221e-01 lypma 0.957294941 28 5"
## [504] "147 0.3780045 8.229606e-01 benzonase 0.957294941 28 5"
## [505] "148 0.2024987 6.539726e-01 lypma 0.957294941 28 1"
## [506] "149 0.5326084 4.685142e-01 benzonase 0.957294941 28 6"
## [507] "150 0.1703680 5.945295e-01 lypma 0.957294941 28 0"
## [508] "151 0.1782140 6.961989e-01 benzonase 0.957294941 28 0"
## [509] "152 0.2068138 6.606163e-01 lypma 0.957294941 28 1"
## [510] "153 0.2158635 5.873480e-01 benzonase 0.957294941 28 1"
## [511] "154 0.4414714 8.368032e-01 lypma 0.957294941 28 8"
## [512] "155 0.4621195 5.618902e-01 benzonase 0.957294941 28 8"
## [513] "156 0.4621195 5.203502e-01 host_zero 0.957294941 28 8"
## [514] "157 0.2224201 6.830204e-01 lypma 0.957294941 28 4"
## [515] "158 0.2329785 8.531239e-01 benzonase 0.957294941 28 4"
## [516] "159 0.2964736 7.591014e-01 lypma 0.957294941 28 4"
## [517] "160 0.3110199 4.696750e-01 benzonase 0.957294941 28 4"
## [518] "161 0.3110199 6.049578e-01 host_zero 0.957294941 28 4"
## [519] "162 0.3110199 6.589802e-01 molysis 0.957294941 28 4"
## [520] "163 0.3110199 6.502519e-01 qiaamp 0.957294941 28 4"
## [521] "164 0.1933460 6.388050e-01 lypma 0.957294941 28 6"
## [522] "165 0.2034839 8.509327e-01 host_zero 0.957294941 28 6"
## [523] "166 0.2034839 8.062335e-01 qiaamp 0.957294941 28 6"
## [524] "167 0.1823954 4.413954e-01 lypma 0.957294941 28 6"
## [525] "168 0.1919822 7.587251e-01 benzonase 0.957294941 28 6"
## [526] "169 0.1919822 6.535084e-01 host_zero 0.957294941 28 6"
## [527] "170 0.1919822 6.098622e-01 qiaamp 0.957294941 28 6"
## [528] "171 0.4199902 8.280648e-01 lypma 0.957294941 28 3"
## [529] "172 0.4360875 8.267253e-01 host_zero 0.957294941 28 3"
## [530] "173 0.4360875 6.494307e-01 molysis 0.957294941 28 3"
## [531] "174 0.4360875 8.275592e-01 qiaamp 0.957294941 28 3"
## [532] "175 0.3659816 8.037219e-01 lypma 0.957294941 28 4"
## [533] "176 0.3841221 4.595107e-01 host_zero 0.957294941 28 4"
## [534] "177 0.3841221 4.750932e-01 qiaamp 0.957294941 28 4"
## [535] "178 0.3427830 5.939768e-01 benzonase 0.957294941 28 5"
## [536] "179 0.3427830 4.630789e-01 host_zero 0.957294941 28 5"
## [537] "180 0.4156849 5.434581e-01 lypma 0.957294941 28 10"
## [538] "181 0.4371636 5.502236e-01 benzonase 0.957294941 28 10"
## [539] "182 0.4371636 5.819839e-01 host_zero 0.957294941 28 10"
## [540] "183 0.4371636 6.095288e-01 qiaamp 0.957294941 28 10"
## [541] "184 0.5013871 8.149885e-01 lypma 0.957294941 28 7"
## [542] "185 0.5275048 6.497249e-01 benzonase 0.957294941 28 7"
## [543] "186 0.5275048 5.380547e-01 host_zero 0.957294941 28 7"
## [544] "187 0.5275048 5.221470e-01 qiaamp 0.957294941 28 7"
## [545] "188 0.4910557 8.498173e-01 lypma 0.957294941 28 7"
## [546] "189 0.5166254 6.046196e-01 benzonase 0.957294941 28 7"
## [547] "190 0.5166254 5.144089e-01 host_zero 0.957294941 28 7"
## [548] "191 0.5166254 4.743354e-01 qiaamp 0.957294941 28 7"
## [549] "192 0.5086050 8.580199e-01 lypma 0.957294941 28 6"
## [550] "193 0.5348119 5.083474e-01 benzonase 0.957294941 28 6"
## [551] "194 0.5348119 7.727788e-01 molysis 0.957294941 28 6"
## [552] "195 0.5348119 4.462439e-01 qiaamp 0.957294941 28 6"
## [553] "196 0.4772137 8.029801e-01 benzonase 0.957294941 28 6"
## [554] "197 0.4772137 6.581510e-01 host_zero 0.957294941 28 6"
## [555] "198 0.4772137 6.167592e-01 qiaamp 0.957294941 28 6"
## [556] "199 0.4256381 8.307384e-01 lypma 0.957294941 28 5"
## [557] "200 0.4453146 8.560059e-01 benzonase 0.957294941 28 5"
## [558] "201 0.3802257 8.199176e-01 host_zero 0.957294941 28 5"
## [559] "202 0.3802257 7.983280e-01 qiaamp 0.957294941 28 5"
## [560] "203 0.3207684 7.762157e-01 lypma 0.957294941 28 4"
## [561] "204 0.3330628 8.093645e-01 molysis 0.957294941 28 4"
## [562] "205 0.3330628 8.431119e-01 qiaamp 0.957294941 28 4"
## [563] "206 0.3231102 7.783727e-01 lypma 0.957294941 28 4"
## [564] "207 0.3389606 6.099784e-01 host_zero 0.957294941 28 4"
## [565] "208 0.3389606 7.632336e-01 qiaamp 0.957294941 28 4"
## [566] "209 0.3953608 8.078767e-01 benzonase 0.957294941 28 5"
## [567] "210 0.3953608 7.025232e-01 host_zero 0.957294941 28 5"
## [568] "211 0.3953608 6.599747e-01 qiaamp 0.957294941 28 5"
## [569] "212 0.4966758 8.546268e-01 lypma 0.957294941 28 3"
## [570] "213 0.5215572 4.560636e-01 benzonase 0.957294941 28 3"
## [571] "214 0.5215572 7.791773e-01 host_zero 0.957294941 28 3"
## [572] "215 0.5215572 7.920335e-01 qiaamp 0.957294941 28 3"
## [573] "216 0.4690513 8.462107e-01 lypma 0.957294941 28 5"
## [574] "217 0.4898869 7.388590e-01 benzonase 0.957294941 28 5"
## [575] "218 0.4898869 8.455571e-01 qiaamp 0.957294941 28 5"
## [576] "219 0.4611195 8.435960e-01 lypma 0.957294941 28 3"
## [577] "220 0.7891379 4.987433e-01 benzonase 0.957294941 28 8"
## [578] "221 0.4117631 6.401816e-01 lypma 0.957294941 28 7"
## [579] "222 0.4331180 6.917961e-01 molysis 0.957294941 28 7"
## [580] "223 0.4080631 8.237075e-01 lypma 0.957294941 28 3"
## [581] "224 0.4257060 6.222846e-01 host_zero 0.957294941 28 3"
## [582] "225 0.3990733 8.197343e-01 lypma 0.957294941 28 4"
## [583] "226 0.4161283 6.956835e-01 benzonase 0.957294941 28 4"
## [584] "227 0.4161283 4.585480e-01 host_zero 0.957294941 28 4"
## [585] "228 0.3870547 6.683028e-01 lypma 0.957294941 28 6"
## [586] "229 0.4073204 6.211689e-01 benzonase 0.957294941 28 6"
## [587] "230 0.4166573 8.271381e-01 lypma 0.957294941 28 5"
## [588] "231 0.4366048 5.721257e-01 benzonase 0.957294941 28 5"
## [589] "232 0.4366048 8.078359e-01 host_zero 0.957294941 28 5"
## [590] "233 0.4366048 8.281527e-01 qiaamp 0.957294941 28 5"
## [591] "234 0.2800266 7.454678e-01 lypma 0.957294941 28 4"
## [592] "235 0.2936272 5.798330e-01 molysis 0.957294941 28 4"
## [593] "236 0.2936272 8.496743e-01 qiaamp 0.957294941 28 4"
## [594] "237 0.3890355 4.795215e-01 benzonase 0.957294941 28 6"
## [595] "238 0.7505253 8.163419e-01 molysis 0.957294941 28 5"
## [596] "239 0.7505253 5.291056e-01 qiaamp 0.957294941 28 5"
## [597] "240 0.4154373 8.266620e-01 lypma 0.957294941 28 5"
## [598] "241 0.4342514 6.136069e-01 benzonase 0.957294941 28 5"
## [599] "242 0.4342514 8.155840e-01 host_zero 0.957294941 28 5"
## [600] "243 0.6137340 8.661804e-01 molysis 0.962422701 28 3"
## [601] "244 0.4257060 8.729109e-01 qiaamp 0.965925965 28 3"
## [602] "245 0.3980656 9.110409e-01 qiaamp 0.987302825 28 8"
## [603] "246 0.6137340 9.253421e-01 host_zero 0.987302825 28 3"
## [604] "247 0.1896494 9.078600e-01 benzonase 0.987302825 28 1"
## [605] "248 0.4832875 9.280361e-01 benzonase 0.987302825 28 7"
## [606] "249 0.4832875 9.510173e-01 molysis 0.987302825 28 7"
## [607] "250 0.5326084 9.516618e-01 molysis 0.987302825 28 6"
## [608] "251 0.2329785 9.354748e-01 qiaamp 0.987302825 28 4"
## [609] "252 0.3841221 9.635628e-01 molysis 0.987302825 28 4"
## [610] "253 0.5275048 9.507936e-01 molysis 0.987302825 28 7"
## [611] "254 0.5166254 9.573121e-01 molysis 0.987302825 28 7"
## [612] "255 0.4534808 9.474385e-01 lypma 0.987302825 28 6"
## [613] "256 0.4453146 9.607816e-01 host_zero 0.987302825 28 5"
## [614] "257 0.4453146 9.468818e-01 qiaamp 0.987302825 28 5"
## [615] "258 0.3802257 8.960944e-01 benzonase 0.987302825 28 5"
## [616] "259 0.3330628 9.385630e-01 host_zero 0.987302825 28 4"
## [617] "260 0.3389606 9.124025e-01 molysis 0.987302825 28 4"
## [618] "261 0.4257060 9.653628e-01 benzonase 0.987302825 28 3"
## [619] "262 0.2936272 9.032130e-01 host_zero 0.987302825 28 4"
## [620] "263 0.3696592 9.253358e-01 lypma 0.987302825 28 6"
## [621] "264 0.4342514 9.162196e-01 qiaamp 0.987302825 28 5"
## [622] "265 0.3780045 9.986839e-01 host_zero 0.998683915 28 5"
## [623] "266 0.3780045 9.985151e-01 qiaamp 0.998683915 28 5"
## [624] "267 0.2329785 9.826388e-01 host_zero 0.998683915 28 4"
## [625] "268 0.2034839 9.839449e-01 benzonase 0.998683915 28 6"
## [626] "269 0.4898869 9.978312e-01 host_zero 0.998683915 28 5"
## [627] "270 0.4161283 9.951135e-01 qiaamp 0.998683915 28 4"
## [628] ""
## [629] "$residuals"
## [630] " BAL_079_f_qiaamp BAL_079_e_benzonase"
## [631] "Actinomyces_naeslundii 0.36697905 0.99741511"
## [632] "Actinomyces_odontolyticus 0.35305166 -0.74823686"
## [633] "Actinomyces_sp_HPA0247 -0.06893043 -0.86838405"
## [634] "Actinomyces_sp_S6_Spd3 0.46130245 0.16899558"
## [635] "Actinomyces_sp_oral_taxon_181 -0.83736181 0.64047178"
## [636] "Scardovia_wiggsiae 0.55761678 0.93932258"
## [637] "Corynebacterium_tuberculostearicum 0.41421152 0.99386096"
## [638] "Rothia_mucilaginosa 0.38915247 1.11600753"
## [639] "Cutibacterium_acnes 0.54691467 1.15865449"
## [640] "Atopobium_deltae 0.50621086 0.07634265"
## [641] "Atopobium_parvulum -0.77768162 -1.99010770"
## [642] "Atopobium_rimae -0.67566329 -0.82992008"
## [643] "Olsenella_scatoligenes -0.21063886 0.12283453"
## [644] "Prevotella_melaninogenica -1.53844358 -1.80428252"
## [645] "Prevotella_oris 0.53331372 0.10646052"
## [646] "Gemella_asaccharolytica 0.47475933 0.33251479"
## [647] "Gemella_bergeri 0.65894033 -0.20357651"
## [648] "Gemella_haemolysans -1.35437053 0.82178458"
## [649] "Gemella_morbillorum 0.30290727 0.30729990"
## [650] "Gemella_sanguinis 0.37294833 0.21927799"
## [651] "Staphylococcus_argenteus 0.54263367 0.46964021"
## [652] "Staphylococcus_aureus 0.54490651 0.51031288"
## [653] "Staphylococcus_epidermidis -0.36131253 0.98223564"
## [654] "Staphylococcus_schweitzeri 0.31921481 0.21770010"
## [655] "Enterococcus_faecalis 0.52124585 0.33249136"
## [656] "Streptococcus_anginosus -0.95890621 0.37359338"
## [657] "Streptococcus_mitis -0.67985101 -0.87054657"
## [658] "Streptococcus_oralis -0.69299624 -0.89531913"
## [659] "Streptococcus_parasanguinis -1.63272181 1.39882940"
## [660] "Streptococcus_pneumoniae 0.67150480 0.42574466"
## [661] "Eubacterium_infirmum -0.86685172 -0.93232498"
## [662] "Peptostreptococcus_stomatis 0.45660379 0.40045378"
## [663] "Bulleidia_extructa 0.05618722 0.98223564"
## [664] "Veillonella_parvula 0.53905404 0.14444070"
## [665] "Finegoldia_magna 0.48033044 0.34457186"
## [666] "Parvimonas_micra 0.29899808 1.02706308"
## [667] "Fusobacterium_nucleatum -0.58456721 -1.19032693"
## [668] "Cupriavidus_sp 0.20448780 1.21945636"
## [669] "Sutterella_parvirubra -0.49589169 -0.12021348"
## [670] "Cardiobacterium_valvarum 2.22687444 -3.45733197"
## [671] "Candida_albicans 0.23403985 0.69930765"
## [672] "Candida_dubliniensis 0.19495448 0.87305950"
## [673] "Candida_parapsilosis 0.07418112 1.26390555"
## [674] "Alloprevotella_tannerae -1.55861839 -1.88754755"
## [675] "Prevotella_jejuni -0.58271193 -0.74039039"
## [676] "Prevotella_salivae -0.56620283 -0.91604993"
## [677] "Prevotella_sp_oral_taxon_306 0.59413062 0.27321871"
## [678] "Prevotella_veroralis 0.60632907 0.25103425"
## [679] "Lactobacillus_fermentum 0.64916462 0.27723739"
## [680] "Megasphaera_micronuciformis -0.74324998 -1.07311144"
## [681] "Neisseria_flavescens 0.47067445 -0.03874778"
## [682] "Staphylococcus_haemolyticus 0.67719777 0.18234097"
## [683] "Candida_orthopsilosis 0.59637273 0.24982213"
## [684] "Campylobacter_concisus -0.62519239 -1.24828975"
## [685] " BAL_079_c_molysis BAL_079_b_host_zero"
## [686] "Actinomyces_naeslundii -1.9235050 0.081716618"
## [687] "Actinomyces_odontolyticus 0.4625014 0.467370258"
## [688] "Actinomyces_sp_HPA0247 1.3353477 0.133617844"
## [689] "Actinomyces_sp_S6_Spd3 -1.8474820 0.279711659"
## [690] "Actinomyces_sp_oral_taxon_181 0.7893348 -0.170604026"
## [691] "Scardovia_wiggsiae -1.6552806 0.318913181"
## [692] "Corynebacterium_tuberculostearicum -1.9313925 0.002605126"
## [693] "Rothia_mucilaginosa -1.0969323 0.748405267"
## [694] "Cutibacterium_acnes -2.9474090 -0.191346749"
## [695] "Atopobium_deltae -1.6997592 0.508283678"
## [696] "Atopobium_parvulum 4.7926942 -0.969960844"
## [697] "Atopobium_rimae 3.7862367 -0.823465568"
## [698] "Olsenella_scatoligenes 1.2084415 -0.358945439"
## [699] "Prevotella_melaninogenica 5.7179366 -1.552888348"
## [700] "Prevotella_oris -1.3761970 0.660306166"
## [701] "Gemella_asaccharolytica -1.6677208 0.313984762"
## [702] "Gemella_bergeri -1.6291800 0.385668172"
## [703] "Gemella_haemolysans -3.5186979 0.530019081"
## [704] "Gemella_morbillorum -1.6797669 0.217516929"
## [705] "Gemella_sanguinis -1.6859804 0.173204514"
## [706] "Staphylococcus_argenteus -1.4796436 0.364634553"
## [707] "Staphylococcus_aureus -1.4802850 0.366376250"
## [708] "Staphylococcus_epidermidis -2.3838376 -0.510119359"
## [709] "Staphylococcus_schweitzeri -1.7012102 0.145653189"
## [710] "Enterococcus_faecalis -1.5679027 0.299316813"
## [711] "Streptococcus_anginosus 1.2680735 -1.152209355"
## [712] "Streptococcus_mitis 2.3763388 -0.861306480"
## [713] "Streptococcus_oralis 2.5049153 -0.927523338"
## [714] "Streptococcus_parasanguinis 0.3511640 1.566885726"
## [715] "Streptococcus_pneumoniae -1.7255774 0.451292924"
## [716] "Eubacterium_infirmum 4.5611094 -0.994247670"
## [717] "Peptostreptococcus_stomatis -1.6300432 0.281402547"
## [718] "Bulleidia_extructa 1.2490818 -0.195850393"
## [719] "Veillonella_parvula -1.8825503 0.206133693"
## [720] "Finegoldia_magna -1.5756906 0.272662707"
## [721] "Parvimonas_micra -1.5393945 0.174141476"
## [722] "Fusobacterium_nucleatum 5.8760333 -0.976855653"
## [723] "Cupriavidus_sp -2.0208356 0.761863074"
## [724] "Sutterella_parvirubra -3.7042252 3.113415795"
## [725] "Cardiobacterium_valvarum 3.4792622 -0.636658184"
## [726] "Candida_albicans -1.9970120 -0.047566236"
## [727] "Candida_dubliniensis -1.8546667 -0.109573593"
## [728] "Candida_parapsilosis -1.9058259 -0.339909100"
## [729] "Alloprevotella_tannerae 5.0449587 -1.499432338"
## [730] "Prevotella_jejuni 5.6699895 -0.360241154"
## [731] "Prevotella_salivae 4.6038609 0.100786306"
## [732] "Prevotella_sp_oral_taxon_306 -1.4858150 0.562623984"
## [733] "Prevotella_veroralis -1.4705202 0.562358365"
## [734] "Lactobacillus_fermentum -1.4396058 0.397846043"
## [735] "Megasphaera_micronuciformis 3.3525159 -0.920578975"
## [736] "Neisseria_flavescens -1.7445425 0.374977860"
## [737] "Staphylococcus_haemolyticus -1.3356195 0.372621576"
## [738] "Candida_orthopsilosis -1.4065474 0.116308842"
## [739] "Campylobacter_concisus 4.6460884 -0.628111627"
## [740] " BAL_078_f_qiaamp BAL_078_e_benzonase"
## [741] "Actinomyces_naeslundii -0.167443970 0.50591021"
## [742] "Actinomyces_odontolyticus 0.737999842 0.32430187"
## [743] "Actinomyces_sp_HPA0247 0.646571408 0.15741471"
## [744] "Actinomyces_sp_S6_Spd3 -0.361968703 -0.61135746"
## [745] "Actinomyces_sp_oral_taxon_181 -0.641061516 0.87969019"
## [746] "Scardovia_wiggsiae -0.024244429 0.40037949"
## [747] "Corynebacterium_tuberculostearicum -0.114278799 0.50828876"
## [748] "Rothia_mucilaginosa -0.319342156 0.90285019"
## [749] "Cutibacterium_acnes -0.769853633 -0.11519569"
## [750] "Atopobium_deltae -0.118350382 -0.50530048"
## [751] "Atopobium_parvulum -0.572348447 3.40563807"
## [752] "Atopobium_rimae -0.264650563 -0.37598924"
## [753] "Olsenella_scatoligenes 0.149595707 0.52598722"
## [754] "Prevotella_melaninogenica -0.005793952 -0.22871478"
## [755] "Prevotella_oris -0.017012589 -0.40094767"
## [756] "Gemella_asaccharolytica -0.162772531 -0.26209895"
## [757] "Gemella_bergeri 0.060563717 -0.75903500"
## [758] "Gemella_haemolysans 1.567571968 -1.20378740"
## [759] "Gemella_morbillorum -0.416857130 -0.36954638"
## [760] "Gemella_sanguinis -0.479058598 -0.58981082"
## [761] "Staphylococcus_argenteus -0.273103567 -0.30317891"
## [762] "Staphylococcus_aureus -0.255556467 -0.24723198"
## [763] "Staphylococcus_epidermidis -0.873815506 0.51265078"
## [764] "Staphylococcus_schweitzeri -0.627846577 -0.68644317"
## [765] "Enterococcus_faecalis -0.368083868 -0.51392024"
## [766] "Streptococcus_anginosus -0.680330646 0.69508706"
## [767] "Streptococcus_mitis 0.242744423 0.09496698"
## [768] "Streptococcus_oralis 0.305958969 0.14655419"
## [769] "Streptococcus_parasanguinis 0.162369472 0.13033212"
## [770] "Streptococcus_pneumoniae 0.005408452 -0.19743357"
## [771] "Eubacterium_infirmum -0.282827957 -0.30538310"
## [772] "Peptostreptococcus_stomatis -0.523739924 -0.53697181"
## [773] "Bulleidia_extructa -0.456315753 0.51265078"
## [774] "Veillonella_parvula -0.330230944 -0.68192617"
## [775] "Finegoldia_magna -0.492585208 -0.58542567"
## [776] "Parvimonas_micra -0.343703945 0.42727918"
## [777] "Fusobacterium_nucleatum -0.089697088 -0.65253869"
## [778] "Cupriavidus_sp -0.118440497 -1.47794082"
## [779] "Sutterella_parvirubra 1.876347305 1.52660954"
## [780] "Cardiobacterium_valvarum 0.110647663 0.84267916"
## [781] "Candida_albicans -1.542274536 -1.03408862"
## [782] "Candida_dubliniensis -1.013186152 -0.29216302"
## [783] "Candida_parapsilosis 1.281356042 1.31038144"
## [784] "Alloprevotella_tannerae 0.445879921 0.15986889"
## [785] "Prevotella_jejuni -0.318029107 -0.43278945"
## [786] "Prevotella_salivae -0.483245057 -0.79017404"
## [787] "Prevotella_sp_oral_taxon_306 -0.017178649 -0.29517244"
## [788] "Prevotella_veroralis -0.026729890 -0.33910660"
## [789] "Lactobacillus_fermentum 1.294275830 -0.10285001"
## [790] "Megasphaera_micronuciformis -0.261000069 -0.54794342"
## [791] "Neisseria_flavescens -0.336819876 -0.80332399"
## [792] "Staphylococcus_haemolyticus 1.168425827 0.26301824"
## [793] "Candida_orthopsilosis 2.363235563 0.86460321"
## [794] "Campylobacter_concisus -0.179151362 -0.75933060"
## [795] " BAL_078_d_lyPMA BAL_078_c_molysis"
## [796] "Actinomyces_naeslundii -0.40425805 0.39463695"
## [797] "Actinomyces_odontolyticus -1.02227939 -0.21118033"
## [798] "Actinomyces_sp_HPA0247 -1.21920335 0.56208167"
## [799] "Actinomyces_sp_S6_Spd3 0.06351437 0.18181174"
## [800] "Actinomyces_sp_oral_taxon_181 -0.11971391 -1.21804574"
## [801] "Scardovia_wiggsiae -0.52431190 0.61542317"
## [802] "Corynebacterium_tuberculostearicum -0.40276804 0.39268213"
## [803] "Rothia_mucilaginosa 0.02233003 -1.19357809"
## [804] "Cutibacterium_acnes 4.44972195 -1.41161231"
## [805] "Atopobium_deltae -0.33266850 0.52824455"
## [806] "Atopobium_parvulum -0.22887585 -1.74772781"
## [807] "Atopobium_rimae -0.04045568 -1.13859699"
## [808] "Olsenella_scatoligenes -0.60282619 -0.22314993"
## [809] "Prevotella_melaninogenica 0.66940921 -1.36574923"
## [810] "Prevotella_oris -0.62569665 0.92604164"
## [811] "Gemella_asaccharolytica -0.32772948 0.54731232"
## [812] "Gemella_bergeri -0.33782746 0.62500833"
## [813] "Gemella_haemolysans -0.38785667 2.05286873"
## [814] "Gemella_morbillorum -0.14180670 0.45303367"
## [815] "Gemella_sanguinis 0.11457147 0.31457765"
## [816] "Staphylococcus_argenteus -0.17695102 0.55718411"
## [817] "Staphylococcus_aureus -0.14126414 0.57181700"
## [818] "Staphylococcus_epidermidis -0.40131235 -0.04377568"
## [819] "Staphylococcus_schweitzeri 0.31642310 0.20429334"
## [820] "Enterococcus_faecalis 0.91258661 0.39533256"
## [821] "Streptococcus_anginosus 0.59167906 -1.30456846"
## [822] "Streptococcus_mitis -0.33900952 -0.65643579"
## [823] "Streptococcus_oralis -0.43023534 -0.66554093"
## [824] "Streptococcus_parasanguinis -0.67948257 -0.43527601"
## [825] "Streptococcus_pneumoniae -0.56561990 0.46089122"
## [826] "Eubacterium_infirmum 0.02030458 -1.60454917"
## [827] "Peptostreptococcus_stomatis 0.99084716 0.24217802"
## [828] "Bulleidia_extructa -0.40131235 -0.76756503"
## [829] "Veillonella_parvula 0.16153411 0.10072963"
## [830] "Finegoldia_magna 1.11523317 0.30395867"
## [831] "Parvimonas_micra -0.47547709 0.67046839"
## [832] "Fusobacterium_nucleatum -0.11182898 -1.64810508"
## [833] "Cupriavidus_sp 1.68826725 -0.08398274"
## [834] "Sutterella_parvirubra 0.62418027 -0.57773133"
## [835] "Cardiobacterium_valvarum -1.18117587 0.06413054"
## [836] "Candida_albicans 0.42510363 -0.92076147"
## [837] "Candida_dubliniensis -1.35900692 -0.21024239"
## [838] "Candida_parapsilosis 2.26586861 1.87617456"
## [839] "Alloprevotella_tannerae -0.68364674 -0.68438570"
## [840] "Prevotella_jejuni -0.26913753 -1.37329268"
## [841] "Prevotella_salivae -0.25059761 -1.31983775"
## [842] "Prevotella_sp_oral_taxon_306 -0.33638431 0.75544066"
## [843] "Prevotella_veroralis -0.34708183 0.74898580"
## [844] "Lactobacillus_fermentum -1.03852742 2.15798209"
## [845] "Megasphaera_micronuciformis 0.21149159 -1.30426152"
## [846] "Neisseria_flavescens 0.03392786 0.30052806"
## [847] "Staphylococcus_haemolyticus -1.89741637 1.72831917"
## [848] "Candida_orthopsilosis 1.55995148 2.88354046"
## [849] "Campylobacter_concisus -0.07187011 -1.41570261"
## [850] " BAL_078_b_host_zero BAL_078_a_control"
## [851] "Actinomyces_naeslundii -0.349786255 0.23293190"
## [852] "Actinomyces_odontolyticus 0.470750139 -0.38508944"
## [853] "Actinomyces_sp_HPA0247 0.357264284 -0.58201340"
## [854] "Actinomyces_sp_S6_Spd3 -0.440639350 0.70070432"
## [855] "Actinomyces_sp_oral_taxon_181 0.128616417 0.51747604"
## [856] "Scardovia_wiggsiae -0.160027881 0.11287805"
## [857] "Corynebacterium_tuberculostearicum -0.422965047 0.23442191"
## [858] "Rothia_mucilaginosa -0.442827244 0.65951999"
## [859] "Cutibacterium_acnes 3.295285464 -0.34786416"
## [860] "Atopobium_deltae -0.013357414 0.30452145"
## [861] "Atopobium_parvulum -0.661707522 -0.87563550"
## [862] "Atopobium_rimae -0.309532696 0.59673427"
## [863] "Olsenella_scatoligenes 0.104209281 0.03436376"
## [864] "Prevotella_melaninogenica 0.082681424 -0.48689042"
## [865] "Prevotella_oris 0.212900005 -0.16954739"
## [866] "Gemella_asaccharolytica -0.220626950 0.30946047"
## [867] "Gemella_bergeri -0.109788297 0.29936249"
## [868] "Gemella_haemolysans -1.435550864 0.24933328"
## [869] "Gemella_morbillorum -0.399327325 0.49538326"
## [870] "Gemella_sanguinis -0.575882271 0.75176142"
## [871] "Staphylococcus_argenteus -0.348182537 0.46023893"
## [872] "Staphylococcus_aureus -0.331166574 0.35202946"
## [873] "Staphylococcus_epidermidis -0.919702188 0.23587760"
## [874] "Staphylococcus_schweitzeri -0.698488051 0.95361305"
## [875] "Enterococcus_faecalis -0.487092756 -0.23809480"
## [876] "Streptococcus_anginosus -0.770713643 0.76547097"
## [877] "Streptococcus_mitis 0.164209101 0.22312835"
## [878] "Streptococcus_oralis 0.174352014 0.20128543"
## [879] "Streptococcus_parasanguinis 0.538668088 -0.04229262"
## [880] "Streptococcus_pneumoniae -0.111883281 0.24553784"
## [881] "Eubacterium_infirmum -0.307303762 0.65749453"
## [882] "Peptostreptococcus_stomatis -0.596021016 0.08668265"
## [883] "Bulleidia_extructa -0.605433223 0.23587760"
## [884] "Veillonella_parvula -0.560231139 0.79872406"
## [885] "Finegoldia_magna -0.597332797 -0.08278577"
## [886] "Parvimonas_micra -0.365640398 0.16171286"
## [887] "Fusobacterium_nucleatum -0.379065388 0.52536097"
## [888] "Cupriavidus_sp -0.927266333 1.61634788"
## [889] "Sutterella_parvirubra 0.978744613 -2.01837458"
## [890] "Cardiobacterium_valvarum 0.587860764 -0.54398592"
## [891] "Candida_albicans -1.720960477 4.02890118"
## [892] "Candida_dubliniensis -1.214794079 3.39531804"
## [893] "Candida_parapsilosis 2.054016476 -5.96348885"
## [894] "Alloprevotella_tannerae 0.607986125 -0.33679175"
## [895] "Prevotella_jejuni 0.007361815 0.36805242"
## [896] "Prevotella_salivae 0.286664223 0.38659234"
## [897] "Prevotella_sp_oral_taxon_306 0.054234862 -0.21324286"
## [898] "Prevotella_veroralis 0.032219551 -0.11535867"
## [899] "Lactobacillus_fermentum 1.036109474 -2.59785486"
## [900] "Megasphaera_micronuciformis -0.335408923 0.84868154"
## [901] "Neisseria_flavescens -0.329596319 0.67111781"
## [902] "Staphylococcus_haemolyticus 1.123289937 -1.74158339"
## [903] "Candida_orthopsilosis 3.020050465 -8.17999391"
## [904] "Campylobacter_concisus -0.079150453 0.56531984"
## [905] " BAL_074_f_qiaamp BAL_074_e_benzonase"
## [906] "Actinomyces_naeslundii -1.12678424 0.58554400"
## [907] "Actinomyces_odontolyticus 0.14100177 0.76627786"
## [908] "Actinomyces_sp_HPA0247 0.05030755 0.60012492"
## [909] "Actinomyces_sp_S6_Spd3 -1.04150825 -0.25192294"
## [910] "Actinomyces_sp_oral_taxon_181 1.86976240 -1.09994092"
## [911] "Scardovia_wiggsiae 3.55590132 0.18321740"
## [912] "Corynebacterium_tuberculostearicum -1.09205709 0.56948454"
## [913] "Rothia_mucilaginosa -1.84266867 0.41849775"
## [914] "Cutibacterium_acnes -1.38928337 0.30434864"
## [915] "Atopobium_deltae -0.89046967 -0.23844570"
## [916] "Atopobium_parvulum -0.67809679 -0.80863069"
## [917] "Atopobium_rimae -1.00960190 -0.08196650"
## [918] "Olsenella_scatoligenes -0.49819933 0.91716625"
## [919] "Prevotella_melaninogenica -0.66271029 0.15334295"
## [920] "Prevotella_oris -0.61196819 0.04307079"
## [921] "Gemella_asaccharolytica -0.91381333 0.02583431"
## [922] "Gemella_bergeri -0.76027345 -0.54089811"
## [923] "Gemella_haemolysans 1.07700060 -1.10736982"
## [924] "Gemella_morbillorum -1.12897452 -0.04268971"
## [925] "Gemella_sanguinis -1.15070409 -0.22248225"
## [926] "Staphylococcus_argenteus -0.86897624 0.13992248"
## [927] "Staphylococcus_aureus -0.84880942 0.19848913"
## [928] "Staphylococcus_epidermidis -1.90335007 0.52209028"
## [929] "Staphylococcus_schweitzeri -1.28739252 -0.30701505"
## [930] "Enterococcus_faecalis -0.98079646 -0.08765876"
## [931] "Streptococcus_anginosus 2.43304755 -2.47507112"
## [932] "Streptococcus_mitis 1.91714220 0.83406373"
## [933] "Streptococcus_oralis 1.74338970 0.70682059"
## [934] "Streptococcus_parasanguinis 3.18999657 -1.46254893"
## [935] "Streptococcus_pneumoniae 1.24428936 0.38146922"
## [936] "Eubacterium_infirmum -1.02890390 -0.01248498"
## [937] "Peptostreptococcus_stomatis -1.13801013 -0.11226796"
## [938] "Bulleidia_extructa -1.48585032 0.52209028"
## [939] "Veillonella_parvula -1.00209075 -0.31481190"
## [940] "Finegoldia_magna -1.10500695 -0.15887334"
## [941] "Parvimonas_micra 2.98640511 -1.77171562"
## [942] "Fusobacterium_nucleatum -0.88944460 -0.41331214"
## [943] "Cupriavidus_sp 0.96947111 -0.29860643"
## [944] "Sutterella_parvirubra 1.88829246 -1.98201332"
## [945] "Cardiobacterium_valvarum -0.50576092 1.26524464"
## [946] "Candida_albicans 2.12594415 0.86850919"
## [947] "Candida_dubliniensis 2.25033551 1.07460356"
## [948] "Candida_parapsilosis 2.60824084 -2.79290044"
## [949] "Alloprevotella_tannerae -0.16201069 0.59095234"
## [950] "Prevotella_jejuni -1.15604474 -0.23183101"
## [951] "Prevotella_salivae -1.33818954 -0.60614446"
## [952] "Prevotella_sp_oral_taxon_306 -0.61118396 0.14979631"
## [953] "Prevotella_veroralis -0.62038111 0.10621624"
## [954] "Lactobacillus_fermentum -0.40318026 0.30678469"
## [955] "Megasphaera_micronuciformis -0.96253584 -0.21050512"
## [956] "Neisseria_flavescens -1.02069203 -0.44822208"
## [957] "Staphylococcus_haemolyticus -0.37241136 0.21462403"
## [958] "Candida_orthopsilosis -0.72089142 0.01445015"
## [959] "Campylobacter_concisus -0.95249564 -0.49370082"
## [960] " BAL_074_d_lyPMA BAL_074_c_molysis"
## [961] "Actinomyces_naeslundii 0.068829147 -0.94083261"
## [962] "Actinomyces_odontolyticus -0.186849987 -1.18430770"
## [963] "Actinomyces_sp_HPA0247 -0.383039730 -0.41031148"
## [964] "Actinomyces_sp_S6_Spd3 0.816402298 -0.87385710"
## [965] "Actinomyces_sp_oral_taxon_181 -1.705891608 1.25933758"
## [966] "Scardovia_wiggsiae -0.348020589 -1.01684228"
## [967] "Corynebacterium_tuberculostearicum 0.051881149 -0.96122545"
## [968] "Rothia_mucilaginosa -0.068569004 2.59394146"
## [969] "Cutibacterium_acnes -1.983648394 6.37622488"
## [970] "Atopobium_deltae 0.327639689 -0.62000403"
## [971] "Atopobium_parvulum 1.097803282 -2.22960545"
## [972] "Atopobium_rimae 0.647020457 -2.25967762"
## [973] "Olsenella_scatoligenes 0.181806246 -1.24707426"
## [974] "Prevotella_melaninogenica 1.444920342 -2.39879487"
## [975] "Prevotella_oris 0.211775225 -0.04504326"
## [976] "Gemella_asaccharolytica 0.353657196 -0.57985778"
## [977] "Gemella_bergeri 0.273762851 -0.57195813"
## [978] "Gemella_haemolysans 0.102014313 2.14516992"
## [979] "Gemella_morbillorum 0.578503388 -0.63521301"
## [980] "Gemella_sanguinis 0.875353455 -0.73319714"
## [981] "Staphylococcus_argenteus 0.659603778 -0.41481786"
## [982] "Staphylococcus_aureus 0.697910373 -0.39756525"
## [983] "Staphylococcus_epidermidis 0.001580554 -1.44943955"
## [984] "Staphylococcus_schweitzeri 1.089304630 -0.83138190"
## [985] "Enterococcus_faecalis 1.732301500 -0.59350932"
## [986] "Streptococcus_anginosus -2.185025701 2.32355174"
## [987] "Streptococcus_mitis -2.979188100 2.24868298"
## [988] "Streptococcus_oralis -2.702764720 2.15016774"
## [989] "Streptococcus_parasanguinis -1.878910214 3.68923713"
## [990] "Streptococcus_pneumoniae -2.332861903 2.96511316"
## [991] "Eubacterium_infirmum 0.706656102 -2.72675442"
## [992] "Peptostreptococcus_stomatis 1.809004425 -0.74822148"
## [993] "Bulleidia_extructa 0.001580554 -2.17322890"
## [994] "Veillonella_parvula 0.922101779 -0.94725947"
## [995] "Finegoldia_magna 1.935238903 -0.68459236"
## [996] "Parvimonas_micra -2.281018481 2.47247063"
## [997] "Fusobacterium_nucleatum 0.520850982 -2.82398188"
## [998] "Cupriavidus_sp 0.549937931 1.13891825"
## [999] "Sutterella_parvirubra -2.977852397 1.54225119"
## [1000] "Cardiobacterium_valvarum -0.365156983 -0.92840734"
## [1001] "Candida_albicans 1.762903097 2.13529499"
## [1002] "Candida_dubliniensis -1.252275749 2.45760653"
## [1003] "Candida_parapsilosis -3.842670297 2.93850337"
## [1004] "Alloprevotella_tannerae 0.140890128 -1.66840560"
## [1005] "Prevotella_jejuni 0.325274314 -2.58743761"
## [1006] "Prevotella_salivae 0.326885389 -2.55091152"
## [1007] "Prevotella_sp_oral_taxon_306 0.502037850 -0.21469395"
## [1008] "Prevotella_veroralis 0.491694418 -0.22079472"
## [1009] "Lactobacillus_fermentum -0.441486360 -0.01551508"
## [1010] "Megasphaera_micronuciformis 0.942383291 -2.38192658"
## [1011] "Neisseria_flavescens 0.782483182 -0.75947338"
## [1012] "Staphylococcus_haemolyticus -0.157026758 0.09120705"
## [1013] "Candida_orthopsilosis -1.286634540 -0.24737590"
## [1014] "Campylobacter_concisus 0.587213086 -2.56517619"
## [1015] " BAL_074_b_host_zero BAL_074_a_control"
## [1016] "Actinomyces_naeslundii -0.933022130 0.35064746"
## [1017] "Actinomyces_odontolyticus 0.249856464 0.09496833"
## [1018] "Actinomyces_sp_HPA0247 0.137104825 -0.10122142"
## [1019] "Actinomyces_sp_S6_Spd3 -0.744074500 1.09822061"
## [1020] "Actinomyces_sp_oral_taxon_181 3.102886737 -1.42407329"
## [1021] "Scardovia_wiggsiae -1.040059643 -0.06620228"
## [1022] "Corynebacterium_tuberculostearicum -1.024638935 0.33369946"
## [1023] "Rothia_mucilaginosa -1.590049359 0.21324931"
## [1024] "Cutibacterium_acnes -1.648520240 0.10976194"
## [1025] "Atopobium_deltae -0.409372302 0.60945800"
## [1026] "Atopobium_parvulum -0.391351468 0.09567199"
## [1027] "Atopobium_rimae -0.678379631 0.92883877"
## [1028] "Olsenella_scatoligenes -0.167481357 0.46362456"
## [1029] "Prevotella_melaninogenica -0.198130520 -0.06675092"
## [1030] "Prevotella_oris -0.005951201 0.31255284"
## [1031] "Gemella_asaccharolytica -0.595563350 0.63547551"
## [1032] "Gemella_bergeri -0.554521065 0.55558116"
## [1033] "Gemella_haemolysans -2.002002957 0.38383263"
## [1034] "Gemella_morbillorum -0.735340316 0.86032170"
## [1035] "Gemella_sanguinis -0.871423360 1.15717177"
## [1036] "Staphylococcus_argenteus -0.567950814 0.94142209"
## [1037] "Staphylococcus_aureus -0.548315133 0.83583234"
## [1038] "Staphylococcus_epidermidis -1.573132357 0.28339887"
## [1039] "Staphylococcus_schweitzeri -0.981929597 1.37112294"
## [1040] "Enterococcus_faecalis -0.723700947 0.22624845"
## [1041] "Streptococcus_anginosus 2.506954639 -2.36660543"
## [1042] "Streptococcus_mitis 1.755627811 -2.47221354"
## [1043] "Streptococcus_oralis 1.794161845 -2.40393888"
## [1044] "Streptococcus_parasanguinis -1.717082629 -1.59709190"
## [1045] "Streptococcus_pneumoniae 1.237800619 -2.57294695"
## [1046] "Eubacterium_infirmum -0.677275312 0.98847442"
## [1047] "Peptostreptococcus_stomatis -0.834186828 0.54946827"
## [1048] "Bulleidia_extructa -1.258863391 0.28339887"
## [1049] "Veillonella_parvula -0.855986545 1.20392009"
## [1050] "Finegoldia_magna -0.833650139 0.38184833"
## [1051] "Parvimonas_micra 2.598495246 -1.99920017"
## [1052] "Fusobacterium_nucleatum -0.802708499 0.80266930"
## [1053] "Cupriavidus_sp 0.627921317 -3.15181195"
## [1054] "Sutterella_parvirubra 1.138133611 0.49502061"
## [1055] "Cardiobacterium_valvarum 0.347556579 -0.08333867"
## [1056] "Candida_albicans 2.201099021 -6.85510138"
## [1057] "Candida_dubliniensis 2.352118474 -5.09528899"
## [1058] "Candida_parapsilosis 2.293434947 -0.60533618"
## [1059] "Alloprevotella_tannerae 0.376199916 0.13237348"
## [1060] "Prevotella_jejuni -0.454549416 0.60709263"
## [1061] "Prevotella_salivae -0.192175858 0.60870370"
## [1062] "Prevotella_sp_oral_taxon_306 -0.163666054 0.26980766"
## [1063] "Prevotella_veroralis -0.185327274 0.36804595"
## [1064] "Lactobacillus_fermentum -0.175474293 0.57250442"
## [1065] "Megasphaera_micronuciformis -0.660840295 1.22420160"
## [1066] "Neisseria_flavescens -0.637364072 1.06430150"
## [1067] "Staphylococcus_haemolyticus -0.197963007 0.28524388"
## [1068] "Candida_orthopsilosis -0.721930769 2.45422889"
## [1069] "Campylobacter_concisus -0.476390336 0.86903140"
## [1070] " BAL_073_f_qiaamp BAL_073_e_benzonase"
## [1071] "Actinomyces_naeslundii 0.665708518 1.149728722"
## [1072] "Actinomyces_odontolyticus 0.949227859 0.346195909"
## [1073] "Actinomyces_sp_HPA0247 0.856539216 0.178048541"
## [1074] "Actinomyces_sp_S6_Spd3 -0.009066427 -0.447789154"
## [1075] "Actinomyces_sp_oral_taxon_181 -0.311126884 1.020290848"
## [1076] "Scardovia_wiggsiae 0.466227518 0.701517464"
## [1077] "Corynebacterium_tuberculostearicum 0.750520711 1.183754298"
## [1078] "Rothia_mucilaginosa -0.094242731 0.938615645"
## [1079] "Cutibacterium_acnes 0.710184881 1.175508847"
## [1080] "Atopobium_deltae 0.393455838 -0.182828230"
## [1081] "Atopobium_parvulum 0.456775754 -0.902066179"
## [1082] "Atopobium_rimae 0.200524561 -0.100148087"
## [1083] "Olsenella_scatoligenes 0.448011676 0.635069212"
## [1084] "Prevotella_melaninogenica 0.308277835 -0.103976964"
## [1085] "Prevotella_oris 0.190709732 -0.382559326"
## [1086] "Gemella_asaccharolytica 0.312854556 0.024194161"
## [1087] "Gemella_bergeri 0.655989350 -0.352943345"
## [1088] "Gemella_haemolysans -1.871138924 0.158600322"
## [1089] "Gemella_morbillorum -0.008038216 -0.150061444"
## [1090] "Gemella_sanguinis -0.139705692 -0.439791892"
## [1091] "Staphylococcus_argenteus -0.063807183 -0.283216496"
## [1092] "Staphylococcus_aureus -0.050756571 -0.231766056"
## [1093] "Staphylococcus_epidermidis 0.079818530 1.276950840"
## [1094] "Staphylococcus_schweitzeri -0.309261339 -0.557191907"
## [1095] "Enterococcus_faecalis -0.129883443 -0.465053786"
## [1096] "Streptococcus_anginosus -0.443380540 0.742703190"
## [1097] "Streptococcus_mitis 0.464354229 0.127242812"
## [1098] "Streptococcus_oralis 0.528288238 0.179549482"
## [1099] "Streptococcus_parasanguinis 0.404641192 0.183269865"
## [1100] "Streptococcus_pneumoniae 0.218239571 -0.173936429"
## [1101] "Eubacterium_infirmum 0.184277456 -0.027611659"
## [1102] "Peptostreptococcus_stomatis -0.282865995 -0.485431858"
## [1103] "Bulleidia_extructa 0.497318283 1.276950840"
## [1104] "Veillonella_parvula 0.009489813 -0.531539384"
## [1105] "Finegoldia_magna -0.254883995 -0.537058430"
## [1106] "Parvimonas_micra -0.046433815 0.535215332"
## [1107] "Fusobacterium_nucleatum 0.469530240 -0.282645338"
## [1108] "Cupriavidus_sp -1.737441245 -0.192581181"
## [1109] "Sutterella_parvirubra -3.422203811 2.788472752"
## [1110] "Cardiobacterium_valvarum 0.355191897 0.897889420"
## [1111] "Candida_albicans -1.307725418 -0.988873478"
## [1112] "Candida_dubliniensis 1.839302451 -1.011557211"
## [1113] "Candida_parapsilosis -0.692874528 0.350434048"
## [1114] "Alloprevotella_tannerae 0.675803892 0.200458884"
## [1115] "Prevotella_jejuni 0.306881656 0.002787341"
## [1116] "Prevotella_salivae 0.170722398 -0.325540561"
## [1117] "Prevotella_sp_oral_taxon_306 0.188912594 -0.278415173"
## [1118] "Prevotella_veroralis 0.178753590 -0.322957093"
## [1119] "Lactobacillus_fermentum 0.406236477 -0.112106613"
## [1120] "Megasphaera_micronuciformis 0.129656544 -0.346620779"
## [1121] "Neisseria_flavescens 0.023518884 -0.632319205"
## [1122] "Staphylococcus_haemolyticus 0.433716377 -0.207556277"
## [1123] "Candida_orthopsilosis 0.126150470 -0.366815993"
## [1124] "Campylobacter_concisus 0.334757441 -0.434755775"
## [1125] " BAL_073_d_lyPMA BAL_073_c_molysis"
## [1126] "Actinomyces_naeslundii 0.33489781 1.02463243"
## [1127] "Actinomyces_odontolyticus -0.90504799 -0.20310933"
## [1128] "Actinomyces_sp_HPA0247 -1.10323216 0.56889247"
## [1129] "Actinomyces_sp_S6_Spd3 0.32242003 0.33155701"
## [1130] "Actinomyces_sp_oral_taxon_181 0.11622410 -1.09126812"
## [1131] "Scardovia_wiggsiae -0.12783658 0.90273810"
## [1132] "Corynebacterium_tuberculostearicum 0.36803485 1.05432463"
## [1133] "Rothia_mucilaginosa 0.15343284 -1.17163568"
## [1134] "Cutibacterium_acnes -1.41060424 -0.13473081"
## [1135] "Atopobium_deltae 0.08514110 0.83689375"
## [1136] "Atopobium_parvulum 0.70625173 -0.92176062"
## [1137] "Atopobium_rimae 0.33072282 -0.87657888"
## [1138] "Olsenella_scatoligenes -0.39840685 -0.12789097"
## [1139] "Prevotella_melaninogenica 0.88948437 -1.25483445"
## [1140] "Prevotella_oris -0.51197095 0.93060695"
## [1141] "Gemella_asaccharolytica 0.05390099 0.81978239"
## [1142] "Gemella_bergeri 0.16360155 1.01727695"
## [1143] "Gemella_haemolysans 1.06986840 -1.38605833"
## [1144] "Gemella_morbillorum 0.17301560 0.65869557"
## [1145] "Gemella_sanguinis 0.35992775 0.45077354"
## [1146] "Staphylococcus_argenteus -0.06165126 0.56332348"
## [1147] "Staphylococcus_aureus -0.03046087 0.57345988"
## [1148] "Staphylococcus_epidermidis 0.45832506 0.70670134"
## [1149] "Staphylococcus_schweitzeri 0.54101171 0.31972156"
## [1150] "Enterococcus_faecalis 1.05679042 0.43037597"
## [1151] "Streptococcus_anginosus 0.73463255 -1.27077537"
## [1152] "Streptococcus_mitis -0.21139633 -0.63798300"
## [1153] "Streptococcus_oralis -0.30190269 -0.64636868"
## [1154] "Streptococcus_parasanguinis -0.53120747 -0.39616130"
## [1155] "Streptococcus_pneumoniae -0.44678540 0.47056532"
## [1156] "Eubacterium_infirmum 0.39341337 -1.34060078"
## [1157] "Peptostreptococcus_stomatis 1.13772447 0.27989494"
## [1158] "Bulleidia_extructa 0.45832506 -0.01708801"
## [1159] "Veillonella_parvula 0.40725824 0.23729337"
## [1160] "Finegoldia_magna 1.25893776 0.33850287"
## [1161] "Parvimonas_micra -0.27220359 0.76458150"
## [1162] "Fusobacterium_nucleatum 0.35340172 -1.29203476"
## [1163] "Cupriavidus_sp 1.63795665 0.11901536"
## [1164] "Sutterella_parvirubra 1.80652269 1.75221185"
## [1165] "Cardiobacterium_valvarum -1.03062826 0.10551776"
## [1166] "Candida_albicans 0.56565613 -0.88936937"
## [1167] "Candida_dubliniensis 0.17277199 2.56279800"
## [1168] "Candida_parapsilosis -0.99745186 -0.02347360"
## [1169] "Alloprevotella_tannerae -0.54771939 -0.65761874"
## [1170] "Prevotella_jejuni 0.26177661 -0.95153893"
## [1171] "Prevotella_salivae 0.30937323 -0.86902730"
## [1172] "Prevotella_sp_oral_taxon_306 -0.22428969 0.75837489"
## [1173] "Prevotella_veroralis -0.23559498 0.75131227"
## [1174] "Lactobacillus_fermentum -1.15849372 0.96687394"
## [1175] "Megasphaera_micronuciformis 0.50815158 -1.11676192"
## [1176] "Neisseria_flavescens 0.30027000 0.45770981"
## [1177] "Staphylococcus_haemolyticus -0.87732312 1.07030707"
## [1178] "Candida_orthopsilosis -1.96601674 0.77263827"
## [1179] "Campylobacter_concisus 0.34804207 -1.10495082"
## [1180] " BAL_073_b_host_zero BAL_073_a_control"
## [1181] "Actinomyces_naeslundii 0.39271516 0.43345045"
## [1182] "Actinomyces_odontolyticus 0.59132708 -0.80649536"
## [1183] "Actinomyces_sp_HPA0247 0.47658102 -1.00467953"
## [1184] "Actinomyces_sp_S6_Spd3 -0.17838815 0.42097266"
## [1185] "Actinomyces_sp_oral_taxon_181 0.36789997 0.21477674"
## [1186] "Scardovia_wiggsiae 0.23979299 -0.02928394"
## [1187] "Corynebacterium_tuberculostearicum 0.35118339 0.46658748"
## [1188] "Rothia_mucilaginosa -0.30837889 0.25198547"
## [1189] "Cutibacterium_acnes -0.01580746 0.49954042"
## [1190] "Atopobium_deltae 0.40779773 0.18369373"
## [1191] "Atopobium_parvulum 0.27676560 -0.47914524"
## [1192] "Atopobium_rimae 0.06499135 0.42927545"
## [1193] "Olsenella_scatoligenes 0.31197417 -0.29985421"
## [1194] "Prevotella_melaninogenica 0.30610214 -0.80545257"
## [1195] "Prevotella_oris 0.32997125 -0.59445901"
## [1196] "Gemella_asaccharolytica 0.16434906 0.15245362"
## [1197] "Gemella_bergeri 0.39498626 0.26215419"
## [1198] "Gemella_haemolysans 0.02551976 1.16842104"
## [1199] "Gemella_morbillorum -0.08115949 0.27156823"
## [1200] "Gemella_sanguinis -0.32718044 0.45848039"
## [1201] "Staphylococcus_argenteus -0.22953723 0.03690138"
## [1202] "Staphylococcus_aureus -0.21701775 -0.07580458"
## [1203] "Staphylococcus_epidermidis -0.05671923 0.55687770"
## [1204] "Staphylococcus_schweitzeri -0.47055389 0.63956435"
## [1205] "Enterococcus_faecalis -0.33954341 -0.63252831"
## [1206] "Streptococcus_anginosus -0.62441461 0.36978714"
## [1207] "Streptococcus_mitis 0.29516783 -0.18789578"
## [1208] "Streptococcus_oralis 0.30603021 -0.20901924"
## [1209] "Streptococcus_parasanguinis 0.69028873 -0.43265484"
## [1210] "Streptococcus_pneumoniae 0.01029676 -0.17426498"
## [1211] "Eubacterium_infirmum 0.06915058 0.49196600"
## [1212] "Peptostreptococcus_stomatis -0.44579816 -0.30507736"
## [1213] "Bulleidia_extructa 0.25754974 0.55687770"
## [1214] "Veillonella_parvula -0.31116146 0.50581088"
## [1215] "Finegoldia_magna -0.45028266 -0.47771849"
## [1216] "Parvimonas_micra -0.15902134 -0.17365095"
## [1217] "Fusobacterium_nucleatum 0.08951086 0.45195436"
## [1218] "Cupriavidus_sp -0.72103220 1.68789744"
## [1219] "Sutterella_parvirubra 0.21441062 -1.19728926"
## [1220] "Cardiobacterium_valvarum 0.74175392 -0.93207563"
## [1221] "Candida_albicans -1.57706243 3.63081636"
## [1222] "Candida_dubliniensis 1.77603652 -3.83811384"
## [1223] "Candida_parapsilosis -1.09469568 2.05661658"
## [1224] "Alloprevotella_tannerae 0.74725902 -0.73950172"
## [1225] "Prevotella_jejuni 0.54162150 0.36032925"
## [1226] "Prevotella_salivae 0.84998060 0.40792586"
## [1227] "Prevotella_sp_oral_taxon_306 0.16967503 -0.63978555"
## [1228] "Prevotella_veroralis 0.14705196 -0.54250913"
## [1229] "Lactobacillus_fermentum 0.16718697 -0.32776862"
## [1230] "Megasphaera_micronuciformis -0.03540338 0.60670421"
## [1231] "Neisseria_flavescens -0.05990863 0.39882263"
## [1232] "Staphylococcus_haemolyticus 0.14140926 -0.61831816"
## [1233] "Candida_orthopsilosis -0.34164435 1.59158101"
## [1234] "Campylobacter_concisus 0.34410727 0.44659471"
## [1235] " BAL_070_6_host_zero BAL_070_5_qiaamp"
## [1236] "Actinomyces_naeslundii 0.80837661 0.26154064"
## [1237] "Actinomyces_odontolyticus -1.77930394 -2.18128113"
## [1238] "Actinomyces_sp_HPA0247 -1.10456797 -1.48448774"
## [1239] "Actinomyces_sp_S6_Spd3 1.08339034 0.95124093"
## [1240] "Actinomyces_sp_oral_taxon_181 -3.42879910 -0.08021219"
## [1241] "Scardovia_wiggsiae 0.64138135 -4.55550119"
## [1242] "Corynebacterium_tuberculostearicum 1.09381547 0.04160365"
## [1243] "Rothia_mucilaginosa 1.59285023 1.86710109"
## [1244] "Cutibacterium_acnes -1.43961101 0.90203745"
## [1245] "Atopobium_deltae -0.49335169 0.10915335"
## [1246] "Atopobium_parvulum 1.74625423 1.57135111"
## [1247] "Atopobium_rimae 1.74638654 1.74939118"
## [1248] "Olsenella_scatoligenes 0.11024334 0.11123081"
## [1249] "Prevotella_melaninogenica 1.36223531 1.89866999"
## [1250] "Prevotella_oris -1.19722622 -0.09504267"
## [1251] "Gemella_asaccharolytica 0.33785648 0.28897198"
## [1252] "Gemella_bergeri -0.11634507 -0.61521995"
## [1253] "Gemella_haemolysans 2.88201498 0.58093688"
## [1254] "Gemella_morbillorum 0.99831020 1.25096260"
## [1255] "Gemella_sanguinis 1.60128156 1.39652004"
## [1256] "Staphylococcus_argenteus 0.78103603 0.66325332"
## [1257] "Staphylococcus_aureus 0.73012321 0.61021596"
## [1258] "Staphylococcus_epidermidis 3.05967313 3.05865958"
## [1259] "Staphylococcus_schweitzeri 2.00531835 1.90528563"
## [1260] "Enterococcus_faecalis 1.25102030 0.95751792"
## [1261] "Streptococcus_anginosus 0.04038297 -0.35043015"
## [1262] "Streptococcus_mitis -1.35369826 -1.94438984"
## [1263] "Streptococcus_oralis -1.34702073 -1.88464067"
## [1264] "Streptococcus_parasanguinis -1.07875992 -2.12428543"
## [1265] "Streptococcus_pneumoniae -1.58750702 -2.13944219"
## [1266] "Eubacterium_infirmum 1.90967617 1.99430612"
## [1267] "Peptostreptococcus_stomatis 1.59460346 1.48801227"
## [1268] "Bulleidia_extructa 1.80259727 1.38866057"
## [1269] "Veillonella_parvula 1.52124545 0.78377784"
## [1270] "Finegoldia_magna 1.60860289 1.37214571"
## [1271] "Parvimonas_micra -2.24797498 -2.89526542"
## [1272] "Fusobacterium_nucleatum 2.06911868 1.09417865"
## [1273] "Cupriavidus_sp 0.25851415 0.68192283"
## [1274] "Sutterella_parvirubra -5.44470464 0.15345574"
## [1275] "Cardiobacterium_valvarum -1.04051308 -2.18695308"
## [1276] "Candida_albicans 1.14449013 0.49001595"
## [1277] "Candida_dubliniensis -2.80378733 -3.27140629"
## [1278] "Candida_parapsilosis -2.91284665 -3.27090347"
## [1279] "Alloprevotella_tannerae -0.23201272 0.59894527"
## [1280] "Prevotella_jejuni 0.26580725 1.74990411"
## [1281] "Prevotella_salivae -1.04525527 2.21691502"
## [1282] "Prevotella_sp_oral_taxon_306 -0.62286782 -0.15468060"
## [1283] "Prevotella_veroralis -0.55630260 -0.13797166"
## [1284] "Lactobacillus_fermentum -1.42566820 -1.94649666"
## [1285] "Megasphaera_micronuciformis 1.95223158 1.83712934"
## [1286] "Neisseria_flavescens 0.65189117 0.86331857"
## [1287] "Staphylococcus_haemolyticus -1.43935776 -1.90692861"
## [1288] "Candida_orthopsilosis -2.07278419 -2.36486734"
## [1289] "Campylobacter_concisus 0.83954514 1.42208195"
## [1290] " BAL_070_4_benzonase BAL_070_3_molysis"
## [1291] "Actinomyces_naeslundii -3.23859804 1.4450682"
## [1292] "Actinomyces_odontolyticus -0.68853878 1.1360960"
## [1293] "Actinomyces_sp_HPA0247 -0.06720411 -2.0560104"
## [1294] "Actinomyces_sp_S6_Spd3 1.14207397 2.2079704"
## [1295] "Actinomyces_sp_oral_taxon_181 -1.44051189 0.2606414"
## [1296] "Scardovia_wiggsiae -2.22443694 1.1539616"
## [1297] "Corynebacterium_tuberculostearicum -3.25538856 1.4456112"
## [1298] "Rothia_mucilaginosa -3.37597111 0.8682046"
## [1299] "Cutibacterium_acnes -2.52331628 -1.8824728"
## [1300] "Atopobium_deltae 0.85023176 0.9546249"
## [1301] "Atopobium_parvulum 0.29516649 0.1063996"
## [1302] "Atopobium_rimae 1.38802390 0.4886168"
## [1303] "Olsenella_scatoligenes -2.20105720 0.3896737"
## [1304] "Prevotella_melaninogenica 1.98363131 -0.6985581"
## [1305] "Prevotella_oris 0.63397569 -0.4354083"
## [1306] "Gemella_asaccharolytica -0.12044431 0.8804838"
## [1307] "Gemella_bergeri 1.85645296 0.5588528"
## [1308] "Gemella_haemolysans 1.33077232 0.7067175"
## [1309] "Gemella_morbillorum 0.25499764 1.2032506"
## [1310] "Gemella_sanguinis 1.03280697 1.6538263"
## [1311] "Staphylococcus_argenteus -0.02316730 0.7739539"
## [1312] "Staphylococcus_aureus -0.22980397 0.7325733"
## [1313] "Staphylococcus_epidermidis -3.29392753 3.1703515"
## [1314] "Staphylococcus_schweitzeri 1.33295003 2.0085772"
## [1315] "Enterococcus_faecalis 0.73414142 1.3357034"
## [1316] "Streptococcus_anginosus 0.66368749 -1.0162814"
## [1317] "Streptococcus_mitis -0.18572695 -3.3306030"
## [1318] "Streptococcus_oralis -0.13760512 -3.3431735"
## [1319] "Streptococcus_parasanguinis -0.24988245 -3.2089638"
## [1320] "Streptococcus_pneumoniae -0.43584388 -2.1709923"
## [1321] "Eubacterium_infirmum 1.27780471 1.1107949"
## [1322] "Peptostreptococcus_stomatis 0.73421785 1.8561917"
## [1323] "Bulleidia_extructa -3.29392753 1.7088001"
## [1324] "Veillonella_parvula 1.38383676 2.4917868"
## [1325] "Finegoldia_magna 0.93678558 1.6178214"
## [1326] "Parvimonas_micra -0.21784197 -2.3681260"
## [1327] "Fusobacterium_nucleatum 2.53882309 -0.1119116"
## [1328] "Cupriavidus_sp 0.74967207 0.8468847"
## [1329] "Sutterella_parvirubra -2.21285549 0.9874935"
## [1330] "Cardiobacterium_valvarum 0.45151875 -2.7205031"
## [1331] "Candida_albicans 0.45514526 1.6718479"
## [1332] "Candida_dubliniensis -0.64394283 -2.9554954"
## [1333] "Candida_parapsilosis -0.13182059 -2.8853784"
## [1334] "Alloprevotella_tannerae 0.93626743 -2.0345486"
## [1335] "Prevotella_jejuni 1.40222351 -0.7577203"
## [1336] "Prevotella_salivae 2.63790899 0.1359156"
## [1337] "Prevotella_sp_oral_taxon_306 0.15057260 0.1866934"
## [1338] "Prevotella_veroralis 0.30481320 0.1910168"
## [1339] "Lactobacillus_fermentum -0.36906545 -1.6697351"
## [1340] "Megasphaera_micronuciformis 2.17818076 1.4504341"
## [1341] "Neisseria_flavescens 1.92261306 1.7457781"
## [1342] "Staphylococcus_haemolyticus -0.45242696 -1.5542138"
## [1343] "Candida_orthopsilosis -0.76205950 -2.0022554"
## [1344] "Campylobacter_concisus 2.93607695 0.4397412"
## [1345] " BAL_070_2_lyPMA BAL_070_1_control"
## [1346] "Actinomyces_naeslundii 0.0005310967 -1.01702980"
## [1347] "Actinomyces_odontolyticus 2.1141773709 1.09661647"
## [1348] "Actinomyces_sp_HPA0247 2.7054752383 1.68791434"
## [1349] "Actinomyces_sp_S6_Spd3 -1.2023366965 -2.21989760"
## [1350] "Actinomyces_sp_oral_taxon_181 1.7093814135 0.69182051"
## [1351] "Scardovia_wiggsiae 1.0001690727 -0.01739183"
## [1352] "Corynebacterium_tuberculostearicum -0.0171479599 -1.03470886"
## [1353] "Rothia_mucilaginosa -0.1071938688 -1.12475477"
## [1354] "Cutibacterium_acnes -1.0554693154 -0.26143820"
## [1355] "Atopobium_deltae -0.0801122888 -1.09767319"
## [1356] "Atopobium_parvulum -1.5751791654 1.25910876"
## [1357] "Atopobium_rimae -0.9372875897 -1.95484849"
## [1358] "Olsenella_scatoligenes 0.8194267929 -0.19813411"
## [1359] "Prevotella_melaninogenica -3.0038139259 1.35909391"
## [1360] "Prevotella_oris 0.9258923680 0.45145356"
## [1361] "Gemella_asaccharolytica -0.0798287019 -1.09738960"
## [1362] "Gemella_bergeri -0.0995369477 -1.11709785"
## [1363] "Gemella_haemolysans -0.7840260444 -1.80158695"
## [1364] "Gemella_morbillorum -0.6097122869 -1.62727319"
## [1365] "Gemella_sanguinis -1.3498526763 -2.36741358"
## [1366] "Staphylococcus_argenteus -0.4210014985 -1.43856240"
## [1367] "Staphylococcus_aureus -0.5261853574 -1.11205722"
## [1368] "Staphylococcus_epidermidis -0.0585932599 -1.07615416"
## [1369] "Staphylococcus_schweitzeri -1.9467394441 -2.96430035"
## [1370] "Enterococcus_faecalis -3.7016785320 0.64437466"
## [1371] "Streptococcus_anginosus 0.8587140893 1.23134732"
## [1372] "Streptococcus_mitis 3.5295939541 2.43698097"
## [1373] "Streptococcus_oralis 3.4349027552 2.41167268"
## [1374] "Streptococcus_parasanguinis 3.0896002611 2.07203936"
## [1375] "Streptococcus_pneumoniae 3.3452671987 2.50167408"
## [1376] "Eubacterium_infirmum -1.1203740443 -2.13793495"
## [1377] "Peptostreptococcus_stomatis -3.9375760536 -0.33107356"
## [1378] "Bulleidia_extructa -0.0585932599 -1.07615416"
## [1379] "Veillonella_parvula -1.4908941304 -2.50845503"
## [1380] "Finegoldia_magna -4.3094098329 0.17865593"
## [1381] "Parvimonas_micra 3.0286991624 2.01113826"
## [1382] "Fusobacterium_nucleatum -0.7624237229 -1.77998462"
## [1383] "Cupriavidus_sp -3.8761618388 -0.15243337"
## [1384] "Sutterella_parvirubra 0.5471494348 2.72064323"
## [1385] "Cardiobacterium_valvarum 2.5769611190 1.55940022"
## [1386] "Candida_albicans -2.7536628617 -0.80461617"
## [1387] "Candida_dubliniensis 2.4385106756 5.53808478"
## [1388] "Candida_parapsilosis 2.5742535517 4.51220845"
## [1389] "Alloprevotella_tannerae 1.0904760010 0.94391999"
## [1390] "Prevotella_jejuni -0.3179133932 -1.33547429"
## [1391] "Prevotella_salivae -0.3856610072 -1.40322191"
## [1392] "Prevotella_sp_oral_taxon_306 0.0586361490 0.58322075"
## [1393] "Prevotella_veroralis 0.0909823905 0.28982185"
## [1394] "Lactobacillus_fermentum 2.6385074990 2.35311906"
## [1395] "Megasphaera_micronuciformis -1.6620264574 -2.67958736"
## [1396] "Neisseria_flavescens -1.1166810353 -2.13424194"
## [1397] "Staphylococcus_haemolyticus 2.9317662486 2.07465767"
## [1398] "Candida_orthopsilosis 1.6926998026 4.13418402"
## [1399] "Campylobacter_concisus -0.8633850520 -1.88094595"
## [1400] ""
## [1401] "$fitted"
## [1402] " BAL_079_f_qiaamp BAL_079_e_benzonase"
## [1403] "Actinomyces_naeslundii -1.18150404 -1.744417383"
## [1404] "Actinomyces_odontolyticus 5.92914473 6.453283539"
## [1405] "Actinomyces_sp_HPA0247 7.08602272 7.685620258"
## [1406] "Actinomyces_sp_S6_Spd3 -1.27582744 -0.915997853"
## [1407] "Actinomyces_sp_oral_taxon_181 0.02283682 -1.387474048"
## [1408] "Scardovia_wiggsiae -1.37214177 -1.686324855"
## [1409] "Corynebacterium_tuberculostearicum -1.22873651 -1.740863235"
## [1410] "Rothia_mucilaginosa 6.89557310 5.783821591"
## [1411] "Cutibacterium_acnes -1.36143966 -1.905656761"
## [1412] "Atopobium_deltae -1.32073585 -0.823344917"
## [1413] "Atopobium_parvulum -0.03684337 1.243105427"
## [1414] "Atopobium_rimae -0.13886170 0.082917807"
## [1415] "Olsenella_scatoligenes -0.60388613 -0.869836799"
## [1416] "Prevotella_melaninogenica 0.72391859 1.057280248"
## [1417] "Prevotella_oris -1.34783871 -0.853462790"
## [1418] "Gemella_asaccharolytica -1.28928432 -1.079517060"
## [1419] "Gemella_bergeri -1.47346532 -0.543425766"
## [1420] "Gemella_haemolysans 0.53984554 -1.568786848"
## [1421] "Gemella_morbillorum -1.11743226 -1.054302171"
## [1422] "Gemella_sanguinis -1.18747332 -0.966280262"
## [1423] "Staphylococcus_argenteus -1.35715866 -1.216642486"
## [1424] "Staphylococcus_aureus -1.35943150 -1.257315148"
## [1425] "Staphylococcus_epidermidis -0.45321246 -1.729237909"
## [1426] "Staphylococcus_schweitzeri -1.13373980 -0.964702371"
## [1427] "Enterococcus_faecalis -1.33577084 -1.079493632"
## [1428] "Streptococcus_anginosus 0.14438122 -1.120595647"
## [1429] "Streptococcus_mitis -0.13467398 0.123544300"
## [1430] "Streptococcus_oralis -0.12152875 0.148316864"
## [1431] "Streptococcus_parasanguinis 4.37354488 4.516023071"
## [1432] "Streptococcus_pneumoniae -1.48602979 -1.172746932"
## [1433] "Eubacterium_infirmum 0.05232673 0.185322704"
## [1434] "Peptostreptococcus_stomatis -1.27112878 -1.147456050"
## [1435] "Bulleidia_extructa -0.87071221 -1.729237909"
## [1436] "Veillonella_parvula -1.35357903 -0.891442967"
## [1437] "Finegoldia_magna -1.29485543 -1.091574136"
## [1438] "Parvimonas_micra -1.11352307 -1.774065352"
## [1439] "Fusobacterium_nucleatum -0.22995778 0.443324656"
## [1440] "Cupriavidus_sp 10.00907963 10.046690455"
## [1441] "Sutterella_parvirubra -0.31863330 -0.626788790"
## [1442] "Cardiobacterium_valvarum 3.33192036 2.710329702"
## [1443] "Candida_albicans -1.04856484 -1.446309920"
## [1444] "Candida_dubliniensis -1.00947947 -1.620061770"
## [1445] "Candida_parapsilosis -0.88870611 -2.010907822"
## [1446] "Alloprevotella_tannerae 0.74409340 1.140545276"
## [1447] "Prevotella_jejuni -0.23181306 -0.006611884"
## [1448] "Prevotella_salivae -0.24832216 0.169047658"
## [1449] "Prevotella_sp_oral_taxon_306 -1.40865561 -1.020220981"
## [1450] "Prevotella_veroralis -1.42085406 -0.998036516"
## [1451] "Lactobacillus_fermentum -1.46368961 -1.024239657"
## [1452] "Megasphaera_micronuciformis -0.07127502 0.326109170"
## [1453] "Neisseria_flavescens -1.28519944 -0.708254489"
## [1454] "Staphylococcus_haemolyticus -1.49172276 -0.929343242"
## [1455] "Candida_orthopsilosis -1.41089772 -0.996824397"
## [1456] "Campylobacter_concisus -0.18933260 0.501287476"
## [1457] " BAL_079_c_molysis BAL_079_b_host_zero"
## [1458] "Actinomyces_naeslundii -1.67530565 -1.04383602"
## [1459] "Actinomyces_odontolyticus 6.94660422 6.15172016"
## [1460] "Actinomyces_sp_HPA0247 7.23879177 7.33065558"
## [1461] "Actinomyces_sp_S6_Spd3 -1.75132857 -1.24183106"
## [1462] "Actinomyces_sp_oral_taxon_181 0.66810036 -0.79151538"
## [1463] "Scardovia_wiggsiae -1.94353005 -1.28103259"
## [1464] "Corynebacterium_tuberculostearicum -1.66741812 -0.96472453"
## [1465] "Rothia_mucilaginosa 7.83808835 6.97438393"
## [1466] "Cutibacterium_acnes -0.65140166 -0.77077266"
## [1467] "Atopobium_deltae -1.89905146 -1.47040308"
## [1468] "Atopobium_parvulum 1.20681531 0.00784144"
## [1469] "Atopobium_rimae 0.80336404 -0.13865384"
## [1470] "Olsenella_scatoligenes -0.16286118 -0.60317397"
## [1471] "Prevotella_melaninogenica 2.15215318 0.59076894"
## [1472] "Prevotella_oris -2.22261362 -1.62242557"
## [1473] "Gemella_asaccharolytica -1.93108985 -1.27610417"
## [1474] "Gemella_bergeri -1.96963063 -1.34778758"
## [1475] "Gemella_haemolysans -0.08011275 -1.49213849"
## [1476] "Gemella_morbillorum -1.91904375 -1.17963633"
## [1477] "Gemella_sanguinis -1.91283025 -1.13532392"
## [1478] "Staphylococcus_argenteus -2.11916702 -1.32675396"
## [1479] "Staphylococcus_aureus -2.11852564 -1.32849565"
## [1480] "Staphylococcus_epidermidis -1.21497297 -0.45200005"
## [1481] "Staphylococcus_schweitzeri -1.89760040 -1.10777259"
## [1482] "Enterococcus_faecalis -2.03090795 -1.26143622"
## [1483] "Streptococcus_anginosus 0.83689835 0.19008995"
## [1484] "Streptococcus_mitis 0.83278555 -0.10081292"
## [1485] "Streptococcus_oralis 0.91825046 -0.03459607"
## [1486] "Streptococcus_parasanguinis 5.03946968 3.95257200"
## [1487] "Streptococcus_pneumoniae -1.87323324 -1.41341233"
## [1488] "Eubacterium_infirmum 1.44232726 0.03212827"
## [1489] "Peptostreptococcus_stomatis -1.96876740 -1.24352195"
## [1490] "Bulleidia_extructa -0.49118362 -0.76626901"
## [1491] "Veillonella_parvula -1.71626028 -1.16825310"
## [1492] "Finegoldia_magna -2.02312000 -1.23478211"
## [1493] "Parvimonas_micra -2.05941608 -1.13626088"
## [1494] "Fusobacterium_nucleatum 1.39672952 0.01473625"
## [1495] "Cupriavidus_sp 9.44409086 10.63261571"
## [1496] "Sutterella_parvirubra 0.10541462 1.21273183"
## [1497] "Cardiobacterium_valvarum 3.44671681 2.81003300"
## [1498] "Candida_albicans -1.60179859 -0.91455317"
## [1499] "Candida_dubliniensis -1.74414392 -0.85254581"
## [1500] "Candida_parapsilosis -1.69298473 -0.62221030"
## [1501] "Alloprevotella_tannerae 1.94263834 0.53731293"
## [1502] "Prevotella_jejuni 0.89172983 -0.60187825"
## [1503] "Prevotella_salivae 0.65654984 -1.06290571"
## [1504] "Prevotella_sp_oral_taxon_306 -2.11299560 -1.52474339"
## [1505] "Prevotella_veroralis -2.12829043 -1.52447777"
## [1506] "Lactobacillus_fermentum -2.15920477 -1.35996545"
## [1507] "Megasphaera_micronuciformis 1.04026575 -0.04154043"
## [1508] "Neisseria_flavescens -1.85426806 -1.33709726"
## [1509] "Staphylococcus_haemolyticus -2.26319114 -1.33474098"
## [1510] "Candida_orthopsilosis -2.19226322 -1.07842825"
## [1511] "Campylobacter_concisus 1.11549796 -0.33400778"
## [1512] " BAL_078_f_qiaamp BAL_078_e_benzonase"
## [1513] "Actinomyces_naeslundii -1.1595840 -1.72249734"
## [1514] "Actinomyces_odontolyticus -2.0650278 -1.54088900"
## [1515] "Actinomyces_sp_HPA0247 -1.9735994 -1.37400184"
## [1516] "Actinomyces_sp_S6_Spd3 -0.9650593 -0.60522967"
## [1517] "Actinomyces_sp_oral_taxon_181 -0.6859665 -2.09627732"
## [1518] "Scardovia_wiggsiae -1.3027835 -1.61696662"
## [1519] "Corynebacterium_tuberculostearicum -1.2127492 -1.72487589"
## [1520] "Rothia_mucilaginosa -1.0076858 -2.11943732"
## [1521] "Cutibacterium_acnes -0.5571743 -1.10139144"
## [1522] "Atopobium_deltae -1.2086776 -0.71128665"
## [1523] "Atopobium_parvulum -0.7546795 0.52526928"
## [1524] "Atopobium_rimae -1.0623774 -0.84059789"
## [1525] "Olsenella_scatoligenes -1.4766237 -1.74257435"
## [1526] "Prevotella_melaninogenica -1.3212340 -0.98787235"
## [1527] "Prevotella_oris -1.3100154 -0.81563946"
## [1528] "Gemella_asaccharolytica -1.1642554 -0.95448818"
## [1529] "Gemella_bergeri -1.3875917 -0.45755213"
## [1530] "Gemella_haemolysans 2.0958327 -0.01279973"
## [1531] "Gemella_morbillorum -0.9101708 -0.84704075"
## [1532] "Gemella_sanguinis -0.8479694 -0.62677631"
## [1533] "Staphylococcus_argenteus -1.0539244 -0.91340823"
## [1534] "Staphylococcus_aureus -1.0714715 -0.96935515"
## [1535] "Staphylococcus_epidermidis -0.4532125 -1.72923791"
## [1536] "Staphylococcus_schweitzeri -0.6991814 -0.53014396"
## [1537] "Enterococcus_faecalis -0.9589441 -0.70266689"
## [1538] "Streptococcus_anginosus -0.6466973 -1.91167419"
## [1539] "Streptococcus_mitis -1.5697724 -1.31155411"
## [1540] "Streptococcus_oralis -1.6329869 -1.36314132"
## [1541] "Streptococcus_parasanguinis -1.4893974 -1.34691925"
## [1542] "Streptococcus_pneumoniae -1.3324364 -1.01915356"
## [1543] "Eubacterium_infirmum -1.0442000 -0.91120403"
## [1544] "Peptostreptococcus_stomatis -0.8032880 -0.67961532"
## [1545] "Bulleidia_extructa -0.8707122 -1.72923791"
## [1546] "Veillonella_parvula -0.9967970 -0.53466096"
## [1547] "Finegoldia_magna -0.8344428 -0.63116146"
## [1548] "Parvimonas_micra -0.9833240 -1.64386631"
## [1549] "Fusobacterium_nucleatum -1.2373309 -0.56404844"
## [1550] "Cupriavidus_sp 11.7560689 11.79367974"
## [1551] "Sutterella_parvirubra 3.5488951 3.24073961"
## [1552] "Cardiobacterium_valvarum -1.4376756 -2.05926629"
## [1553] "Candida_albicans 0.2152466 -0.18249851"
## [1554] "Candida_dubliniensis -0.3138418 -0.92442411"
## [1555] "Candida_parapsilosis 8.0185859 6.89638421"
## [1556] "Alloprevotella_tannerae -1.7729079 -1.37645602"
## [1557] "Prevotella_jejuni -1.0089989 -0.78379768"
## [1558] "Prevotella_salivae -0.8437829 -0.42641309"
## [1559] "Prevotella_sp_oral_taxon_306 -1.3098493 -0.92141469"
## [1560] "Prevotella_veroralis -1.3002981 -0.87748053"
## [1561] "Lactobacillus_fermentum 8.8592844 9.29873436"
## [1562] "Megasphaera_micronuciformis -1.0660279 -0.66864371"
## [1563] "Neisseria_flavescens -0.9902081 -0.41326314"
## [1564] "Staphylococcus_haemolyticus 9.7078450 10.27022453"
## [1565] "Candida_orthopsilosis 8.9510304 9.36510374"
## [1566] "Campylobacter_concisus -1.1478766 -0.45725653"
## [1567] " BAL_078_d_lyPMA BAL_078_c_molysis"
## [1568] "Actinomyces_naeslundii -0.955784739 -1.65338560"
## [1569] "Actinomyces_odontolyticus -0.337763404 -1.04756832"
## [1570] "Actinomyces_sp_HPA0247 -0.140839446 -1.82083033"
## [1571] "Actinomyces_sp_S6_Spd3 -1.423557165 -1.44056039"
## [1572] "Actinomyces_sp_oral_taxon_181 -1.240328886 -0.04070292"
## [1573] "Scardovia_wiggsiae -0.835730889 -1.87417182"
## [1574] "Corynebacterium_tuberculostearicum -0.957274754 -1.65143078"
## [1575] "Rothia_mucilaginosa -1.382372828 -0.06517056"
## [1576] "Cutibacterium_acnes 1.436603338 0.15286366"
## [1577] "Atopobium_deltae -1.027374294 -1.78699320"
## [1578] "Atopobium_parvulum -1.131166946 0.48897916"
## [1579] "Atopobium_rimae -1.319587109 -0.12015166"
## [1580] "Olsenella_scatoligenes -0.757216601 -1.03559872"
## [1581] "Prevotella_melaninogenica -2.029452003 0.10700058"
## [1582] "Prevotella_oris -0.734346148 -2.18479029"
## [1583] "Gemella_asaccharolytica -1.032313314 -1.80606097"
## [1584] "Gemella_bergeri -1.022215336 -1.88375698"
## [1585] "Gemella_haemolysans -0.972186123 1.47587436"
## [1586] "Gemella_morbillorum -1.218236097 -1.71178232"
## [1587] "Gemella_sanguinis -1.474614262 -1.57332630"
## [1588] "Staphylococcus_argenteus -1.183091773 -1.81593276"
## [1589] "Staphylococcus_aureus -1.218778649 -1.83056565"
## [1590] "Staphylococcus_epidermidis -0.958730439 -1.21497297"
## [1591] "Staphylococcus_schweitzeri -1.676465893 -1.46304199"
## [1592] "Enterococcus_faecalis -2.272629408 -1.65408121"
## [1593] "Streptococcus_anginosus -1.951721857 0.04581981"
## [1594] "Streptococcus_mitis -1.021033274 -0.60231286"
## [1595] "Streptococcus_oralis -0.929807453 -0.59320772"
## [1596] "Streptococcus_parasanguinis -0.680560221 -0.82347264"
## [1597] "Streptococcus_pneumoniae -0.794422897 -1.71963987"
## [1598] "Eubacterium_infirmum -1.380347369 0.34580052"
## [1599] "Peptostreptococcus_stomatis -2.350889954 -1.50092667"
## [1600] "Bulleidia_extructa -0.958730439 -0.49118362"
## [1601] "Veillonella_parvula -1.521576901 -1.35947828"
## [1602] "Finegoldia_magna -2.475275963 -1.56270732"
## [1603] "Parvimonas_micra -0.884565699 -1.92921704"
## [1604] "Fusobacterium_nucleatum -1.248213811 0.38935643"
## [1605] "Cupriavidus_sp 10.045571548 11.19108015"
## [1606] "Sutterella_parvirubra 4.486576436 3.97294303"
## [1607] "Cardiobacterium_valvarum -0.178866919 -1.32287919"
## [1608] "Candida_albicans -1.785146427 -0.33798718"
## [1609] "Candida_dubliniensis -0.001035877 -1.04850626"
## [1610] "Candida_parapsilosis 8.196151809 7.21430730"
## [1611] "Alloprevotella_tannerae -0.676396054 -0.57436295"
## [1612] "Prevotella_jejuni -1.090905262 0.11454403"
## [1613] "Prevotella_salivae -1.109445186 0.06108909"
## [1614] "Prevotella_sp_oral_taxon_306 -1.023658483 -2.01418931"
## [1615] "Prevotella_veroralis -1.012960960 -2.00773445"
## [1616] "Lactobacillus_fermentum 10.297003155 8.16376925"
## [1617] "Megasphaera_micronuciformis -1.571534381 0.04551287"
## [1618] "Neisseria_flavescens -1.393970651 -1.55927672"
## [1619] "Staphylococcus_haemolyticus 10.891873055 8.93637662"
## [1620] "Candida_orthopsilosis 10.916186182 8.16966492"
## [1621] "Campylobacter_concisus -1.288172686 0.15695396"
## [1622] " BAL_078_b_host_zero BAL_078_a_control"
## [1623] "Actinomyces_naeslundii -1.02191598 -0.69674674"
## [1624] "Actinomyces_odontolyticus -1.84245237 -0.07872541"
## [1625] "Actinomyces_sp_HPA0247 -1.72896652 0.11819855"
## [1626] "Actinomyces_sp_S6_Spd3 -0.93106288 -1.16451917"
## [1627] "Actinomyces_sp_oral_taxon_181 -1.50031865 -0.98129089"
## [1628] "Scardovia_wiggsiae -1.21167435 -0.57669290"
## [1629] "Corynebacterium_tuberculostearicum -0.94873719 -0.69823676"
## [1630] "Rothia_mucilaginosa -0.92887499 -1.12333483"
## [1631] "Cutibacterium_acnes 0.03349267 -0.11595069"
## [1632] "Atopobium_deltae -1.35834482 -0.76833630"
## [1633] "Atopobium_parvulum -0.70999471 0.41182066"
## [1634] "Atopobium_rimae -1.06216954 -1.06054912"
## [1635] "Olsenella_scatoligenes -1.47591151 -0.49817861"
## [1636] "Prevotella_melaninogenica -1.45438366 0.02307557"
## [1637] "Prevotella_oris -1.58460224 -0.29426745"
## [1638] "Gemella_asaccharolytica -1.15107528 -0.77327532"
## [1639] "Gemella_bergeri -1.26191394 -0.76317734"
## [1640] "Gemella_haemolysans 0.06384863 -0.71314813"
## [1641] "Gemella_morbillorum -0.97237491 -0.95919810"
## [1642] "Gemella_sanguinis -0.79581996 -1.21557627"
## [1643] "Staphylococcus_argenteus -1.02351970 -0.92405378"
## [1644] "Staphylococcus_aureus -1.04053566 -0.81584431"
## [1645] "Staphylococcus_epidermidis -0.45200005 -0.69969245"
## [1646] "Staphylococcus_schweitzeri -0.67321418 -1.41742790"
## [1647] "Enterococcus_faecalis -0.88460948 -0.22572005"
## [1648] "Streptococcus_anginosus -0.60098859 -1.22928582"
## [1649] "Streptococcus_mitis -1.53591133 -0.68694320"
## [1650] "Streptococcus_oralis -1.54605425 -0.66510028"
## [1651] "Streptococcus_parasanguinis -1.91037032 -0.42152223"
## [1652] "Streptococcus_pneumoniae -1.25981895 -0.70935269"
## [1653] "Eubacterium_infirmum -1.06439847 -1.12130938"
## [1654] "Peptostreptococcus_stomatis -0.77568122 -0.55049750"
## [1655] "Bulleidia_extructa -0.76626901 -0.69969245"
## [1656] "Veillonella_parvula -0.81147109 -1.26253891"
## [1657] "Finegoldia_magna -0.77436944 -0.38102908"
## [1658] "Parvimonas_micra -1.00606184 -0.62552770"
## [1659] "Fusobacterium_nucleatum -0.99263685 -0.98917582"
## [1660] "Cupriavidus_sp 12.37960500 5.56332018"
## [1661] "Sutterella_parvirubra 5.08026024 1.55455973"
## [1662] "Cardiobacterium_valvarum -1.95956300 0.08017107"
## [1663] "Candida_albicans 0.34925824 -4.49271603"
## [1664] "Candida_dubliniensis -0.15690815 -3.85913289"
## [1665] "Candida_parapsilosis 8.28508173 5.49967400"
## [1666] "Alloprevotella_tannerae -1.97968836 -0.12702310"
## [1667] "Prevotella_jejuni -1.37906405 -0.83186727"
## [1668] "Prevotella_salivae -1.65836646 -0.85040719"
## [1669] "Prevotella_sp_oral_taxon_306 -1.42593710 -0.25057199"
## [1670] "Prevotella_veroralis -1.40392178 -0.34845618"
## [1671] "Lactobacillus_fermentum 8.96300857 9.82386868"
## [1672] "Megasphaera_micronuciformis -1.03629331 -1.31249639"
## [1673] "Neisseria_flavescens -1.04210591 -1.13493266"
## [1674] "Staphylococcus_haemolyticus 9.86482679 10.99045872"
## [1675] "Candida_orthopsilosis 9.28349989 7.71617906"
## [1676] "Campylobacter_concisus -1.29255178 -1.02913469"
## [1677] " BAL_074_f_qiaamp BAL_074_e_benzonase"
## [1678] "Actinomyces_naeslundii -1.2297783 -1.79269163"
## [1679] "Actinomyces_odontolyticus -2.4975643 -1.97342549"
## [1680] "Actinomyces_sp_HPA0247 -2.4068701 -1.80727255"
## [1681] "Actinomyces_sp_S6_Spd3 -1.3150543 -0.95522469"
## [1682] "Actinomyces_sp_oral_taxon_181 1.3031042 -0.10720671"
## [1683] "Scardovia_wiggsiae -1.0761819 -1.39036503"
## [1684] "Corynebacterium_tuberculostearicum -1.2645054 -1.77663217"
## [1685] "Rothia_mucilaginosa -0.5138939 -1.62564538"
## [1686] "Cutibacterium_acnes -0.9672792 -1.51149627"
## [1687] "Atopobium_deltae -1.4660929 -0.96870194"
## [1688] "Atopobium_parvulum -1.6784657 -0.39851695"
## [1689] "Atopobium_rimae -1.3469606 -1.12518113"
## [1690] "Olsenella_scatoligenes -1.8583632 -2.12431388"
## [1691] "Prevotella_melaninogenica -1.6938522 -1.36049058"
## [1692] "Prevotella_oris -1.7445943 -1.25021842"
## [1693] "Gemella_asaccharolytica -1.4427492 -1.23298195"
## [1694] "Gemella_bergeri -1.5962891 -0.66624953"
## [1695] "Gemella_haemolysans 2.0088546 -0.09977781"
## [1696] "Gemella_morbillorum -1.2275880 -1.16445792"
## [1697] "Gemella_sanguinis -1.2058584 -0.98466539"
## [1698] "Staphylococcus_argenteus -1.4875863 -1.34707012"
## [1699] "Staphylococcus_aureus -1.5077531 -1.40563676"
## [1700] "Staphylococcus_epidermidis -0.4532125 -1.72923791"
## [1701] "Staphylococcus_schweitzeri -1.0691700 -0.90013258"
## [1702] "Enterococcus_faecalis -1.3757661 -1.11948887"
## [1703] "Streptococcus_anginosus 2.5329004 1.26792348"
## [1704] "Streptococcus_mitis 8.0441821 8.30240034"
## [1705] "Streptococcus_oralis 7.5255427 7.79538832"
## [1706] "Streptococcus_parasanguinis 0.1129231 0.25540130"
## [1707] "Streptococcus_pneumoniae 10.6365475 10.94983036"
## [1708] "Eubacterium_infirmum -1.3276586 -1.19466265"
## [1709] "Peptostreptococcus_stomatis -1.2185524 -1.09487967"
## [1710] "Bulleidia_extructa -0.8707122 -1.72923791"
## [1711] "Veillonella_parvula -1.3544718 -0.89233573"
## [1712] "Finegoldia_magna -1.2515556 -1.04827429"
## [1713] "Parvimonas_micra 1.2251103 0.56456799"
## [1714] "Fusobacterium_nucleatum -1.4671179 -0.79383550"
## [1715] "Cupriavidus_sp 8.9282671 8.96587793"
## [1716] "Sutterella_parvirubra 1.0830212 0.77486569"
## [1717] "Cardiobacterium_valvarum -1.8508016 -2.47239227"
## [1718] "Candida_albicans 11.1467704 10.74902533"
## [1719] "Candida_dubliniensis 8.2242865 7.61370419"
## [1720] "Candida_parapsilosis 2.7079545 1.58575281"
## [1721] "Alloprevotella_tannerae -2.1945518 -1.79809998"
## [1722] "Prevotella_jejuni -1.2005178 -0.97531662"
## [1723] "Prevotella_salivae -1.0183730 -0.60100318"
## [1724] "Prevotella_sp_oral_taxon_306 -1.7453786 -1.35694394"
## [1725] "Prevotella_veroralis -1.7361814 -1.31336388"
## [1726] "Lactobacillus_fermentum -1.9533823 -1.51393232"
## [1727] "Megasphaera_micronuciformis -1.3940267 -0.99664251"
## [1728] "Neisseria_flavescens -1.3358705 -0.75892556"
## [1729] "Staphylococcus_haemolyticus -1.9841512 -1.42177166"
## [1730] "Candida_orthopsilosis -1.6356711 -1.22159778"
## [1731] "Campylobacter_concisus -1.4040669 -0.71344681"
## [1732] " BAL_074_d_lyPMA BAL_074_c_molysis"
## [1733] "Actinomyces_naeslundii -1.0259790 -1.72357990"
## [1734] "Actinomyces_odontolyticus -0.7702999 -1.48010481"
## [1735] "Actinomyces_sp_HPA0247 -0.5741102 -2.25410104"
## [1736] "Actinomyces_sp_S6_Spd3 -1.7735522 -1.79055541"
## [1737] "Actinomyces_sp_oral_taxon_181 0.7487417 1.94836769"
## [1738] "Scardovia_wiggsiae -0.6091293 -1.64757023"
## [1739] "Corynebacterium_tuberculostearicum -1.0090310 -1.70318706"
## [1740] "Rothia_mucilaginosa -0.8885809 0.42862138"
## [1741] "Cutibacterium_acnes 1.0264985 -0.25724117"
## [1742] "Atopobium_deltae -1.2847896 -2.04440848"
## [1743] "Atopobium_parvulum -2.0549532 -0.43480706"
## [1744] "Atopobium_rimae -1.6041703 -0.40473490"
## [1745] "Olsenella_scatoligenes -1.1389561 -1.41733825"
## [1746] "Prevotella_melaninogenica -2.4020702 -0.26561765"
## [1747] "Prevotella_oris -1.1689251 -2.61936926"
## [1748] "Gemella_asaccharolytica -1.3108071 -2.08455474"
## [1749] "Gemella_bergeri -1.2309127 -2.09245439"
## [1750] "Gemella_haemolysans -1.0591642 1.38889629"
## [1751] "Gemella_morbillorum -1.5356533 -2.02919950"
## [1752] "Gemella_sanguinis -1.8325033 -1.93121538"
## [1753] "Staphylococcus_argenteus -1.6167537 -2.24959465"
## [1754] "Staphylococcus_aureus -1.6550603 -2.26684726"
## [1755] "Staphylococcus_epidermidis -0.9587304 -1.21497297"
## [1756] "Staphylococcus_schweitzeri -2.0464545 -1.83303061"
## [1757] "Enterococcus_faecalis -2.6894514 -2.07090319"
## [1758] "Streptococcus_anginosus 1.2278758 3.22541748"
## [1759] "Streptococcus_mitis 8.5929212 9.01164160"
## [1760] "Streptococcus_oralis 8.2287222 8.56532192"
## [1761] "Streptococcus_parasanguinis 0.9217603 0.77884791"
## [1762] "Streptococcus_pneumoniae 11.1745610 10.24934405"
## [1763] "Eubacterium_infirmum -1.6638060 0.06234191"
## [1764] "Peptostreptococcus_stomatis -2.7661543 -1.91619103"
## [1765] "Bulleidia_extructa -0.9587304 -0.49118362"
## [1766] "Veillonella_parvula -1.8792517 -1.71715304"
## [1767] "Finegoldia_magna -2.8923888 -1.97982015"
## [1768] "Parvimonas_micra 1.3238686 0.27921726"
## [1769] "Fusobacterium_nucleatum -1.4780009 0.15956937"
## [1770] "Cupriavidus_sp 7.2177697 8.36327834"
## [1771] "Sutterella_parvirubra 2.0207025 1.50706910"
## [1772] "Cardiobacterium_valvarum -0.5919929 -1.73600517"
## [1773] "Candida_albicans 9.1463774 10.59353665"
## [1774] "Candida_dubliniensis 8.5370924 7.48962204"
## [1775] "Candida_parapsilosis 2.8855204 1.90367590"
## [1776] "Alloprevotella_tannerae -1.0980400 -0.99600691"
## [1777] "Prevotella_jejuni -1.2824242 -0.07697491"
## [1778] "Prevotella_salivae -1.2840353 -0.11350099"
## [1779] "Prevotella_sp_oral_taxon_306 -1.4591877 -2.44971856"
## [1780] "Prevotella_veroralis -1.4488443 -2.44361779"
## [1781] "Lactobacillus_fermentum -0.5156635 -2.64889743"
## [1782] "Megasphaera_micronuciformis -1.8995332 -0.28248593"
## [1783] "Neisseria_flavescens -1.7396331 -1.90493913"
## [1784] "Staphylococcus_haemolyticus -0.8001231 -2.75561956"
## [1785] "Candida_orthopsilosis 0.3294847 -2.41703661"
## [1786] "Campylobacter_concisus -1.5443630 -0.09923633"
## [1787] " BAL_074_b_host_zero BAL_074_a_control"
## [1788] "Actinomyces_naeslundii -1.09211027 -0.7669410"
## [1789] "Actinomyces_odontolyticus -2.27498887 -0.5112619"
## [1790] "Actinomyces_sp_HPA0247 -2.16223723 -0.3150722"
## [1791] "Actinomyces_sp_S6_Spd3 -1.28105790 -1.5145142"
## [1792] "Actinomyces_sp_oral_taxon_181 0.48875196 1.0077797"
## [1793] "Scardovia_wiggsiae -0.98507276 -0.3500913"
## [1794] "Corynebacterium_tuberculostearicum -1.00049347 -0.7499930"
## [1795] "Rothia_mucilaginosa -0.43508304 -0.6295429"
## [1796] "Cutibacterium_acnes -0.37661216 -0.5260555"
## [1797] "Atopobium_deltae -1.61576010 -1.0257516"
## [1798] "Atopobium_parvulum -1.63378093 -0.5119656"
## [1799] "Atopobium_rimae -1.34675277 -1.3451323"
## [1800] "Olsenella_scatoligenes -1.85765104 -0.8799181"
## [1801] "Prevotella_melaninogenica -1.82700188 -0.3495427"
## [1802] "Prevotella_oris -2.01918120 -0.7288464"
## [1803] "Gemella_asaccharolytica -1.42956905 -1.0517691"
## [1804] "Gemella_bergeri -1.47061134 -0.9718747"
## [1805] "Gemella_haemolysans -0.02312945 -0.8001262"
## [1806] "Gemella_morbillorum -1.28979209 -1.2766153"
## [1807] "Gemella_sanguinis -1.15370904 -1.5734653"
## [1808] "Staphylococcus_argenteus -1.45718159 -1.3577157"
## [1809] "Staphylococcus_aureus -1.47681727 -1.2521259"
## [1810] "Staphylococcus_epidermidis -0.45200005 -0.6996924"
## [1811] "Staphylococcus_schweitzeri -1.04320280 -1.7874165"
## [1812] "Enterococcus_faecalis -1.30143146 -0.6425420"
## [1813] "Streptococcus_anginosus 2.57860908 1.9503119"
## [1814] "Streptococcus_mitis 8.07804312 8.9270113"
## [1815] "Streptococcus_oralis 7.61247539 8.4934294"
## [1816] "Streptococcus_parasanguinis -0.30804977 1.1807983"
## [1817] "Streptococcus_pneumoniae 10.70916496 11.2596312"
## [1818] "Eubacterium_infirmum -1.34785709 -1.4047680"
## [1819] "Peptostreptococcus_stomatis -1.19094557 -0.9657619"
## [1820] "Bulleidia_extructa -0.76626901 -0.6996924"
## [1821] "Veillonella_parvula -1.16914586 -1.6202137"
## [1822] "Finegoldia_magna -1.19148226 -0.7981419"
## [1823] "Parvimonas_micra 1.20237246 1.5829066"
## [1824] "Fusobacterium_nucleatum -1.22242390 -1.2189629"
## [1825] "Cupriavidus_sp 9.55180319 2.7355184"
## [1826] "Sutterella_parvirubra 2.61438631 -0.9113142"
## [1827] "Cardiobacterium_valvarum -2.37268898 -0.3329549"
## [1828] "Candida_albicans 11.28078208 6.4388078"
## [1829] "Candida_dubliniensis 8.38122015 4.6789954"
## [1830] "Candida_parapsilosis 2.97445033 0.1890426"
## [1831] "Alloprevotella_tannerae -2.40133232 -0.5486671"
## [1832] "Prevotella_jejuni -1.57058299 -1.0233862"
## [1833] "Prevotella_salivae -1.83295654 -1.0249973"
## [1834] "Prevotella_sp_oral_taxon_306 -1.86146635 -0.6861012"
## [1835] "Prevotella_veroralis -1.83980513 -0.7843395"
## [1836] "Lactobacillus_fermentum -1.84965811 -0.9887980"
## [1837] "Megasphaera_micronuciformis -1.36429211 -1.6404952"
## [1838] "Neisseria_flavescens -1.38776833 -1.4805951"
## [1839] "Staphylococcus_haemolyticus -1.82716939 -0.7015375"
## [1840] "Candida_orthopsilosis -1.30320163 -2.8705225"
## [1841] "Campylobacter_concisus -1.54874207 -1.2853250"
## [1842] " BAL_073_f_qiaamp BAL_073_e_benzonase"
## [1843] "Actinomyces_naeslundii -1.03910245 -1.602015791"
## [1844] "Actinomyces_odontolyticus -1.32262179 -0.798482977"
## [1845] "Actinomyces_sp_HPA0247 -1.22993315 -0.630335610"
## [1846] "Actinomyces_sp_S6_Spd3 -0.36432750 -0.004497914"
## [1847] "Actinomyces_sp_oral_taxon_181 -0.06226705 -1.472577916"
## [1848] "Scardovia_wiggsiae -0.83962145 -1.153804533"
## [1849] "Corynebacterium_tuberculostearicum -1.12391464 -1.636041366"
## [1850] "Rothia_mucilaginosa -0.27915120 -1.390902714"
## [1851] "Cutibacterium_acnes -1.08357881 -1.627795916"
## [1852] "Atopobium_deltae -0.76684977 -0.269458839"
## [1853] "Atopobium_parvulum -0.83016968 0.449779111"
## [1854] "Atopobium_rimae -0.57391849 -0.352138982"
## [1855] "Olsenella_scatoligenes -0.82140561 -1.087356280"
## [1856] "Prevotella_melaninogenica -0.68167177 -0.348310105"
## [1857] "Prevotella_oris -0.56410366 -0.069727743"
## [1858] "Gemella_asaccharolytica -0.68624849 -0.476481229"
## [1859] "Gemella_bergeri -1.02938328 -0.099343723"
## [1860] "Gemella_haemolysans 1.49774499 -0.610887391"
## [1861] "Gemella_morbillorum -0.36535571 -0.302225625"
## [1862] "Gemella_sanguinis -0.23368824 -0.012495177"
## [1863] "Staphylococcus_argenteus -0.30958675 -0.169070573"
## [1864] "Staphylococcus_aureus -0.32263736 -0.220521013"
## [1865] "Staphylococcus_epidermidis -0.45321246 -1.729237909"
## [1866] "Staphylococcus_schweitzeri -0.06413259 0.104904838"
## [1867] "Enterococcus_faecalis -0.24351049 0.012766717"
## [1868] "Streptococcus_anginosus 0.06998661 -1.194990259"
## [1869] "Streptococcus_mitis -0.83774816 -0.579529881"
## [1870] "Streptococcus_oralis -0.90168217 -0.631836551"
## [1871] "Streptococcus_parasanguinis -0.77803512 -0.635556934"
## [1872] "Streptococcus_pneumoniae -0.59163350 -0.278350640"
## [1873] "Eubacterium_infirmum -0.55767139 -0.424675409"
## [1874] "Peptostreptococcus_stomatis -0.09052794 0.033144789"
## [1875] "Bulleidia_extructa -0.87071221 -1.729237909"
## [1876] "Veillonella_parvula -0.38288374 0.079252315"
## [1877] "Finegoldia_magna -0.11850994 0.084771362"
## [1878] "Parvimonas_micra -0.32696012 -0.987502401"
## [1879] "Fusobacterium_nucleatum -0.84292417 -0.169641731"
## [1880] "Cupriavidus_sp 12.07403305 12.111643880"
## [1881] "Sutterella_parvirubra 3.04880988 2.740654390"
## [1882] "Cardiobacterium_valvarum -0.72858583 -1.350176489"
## [1883] "Candida_albicans 0.93433149 0.536586409"
## [1884] "Candida_dubliniensis 7.24059017 6.630007871"
## [1885] "Candida_parapsilosis 0.31948060 -0.802721116"
## [1886] "Alloprevotella_tannerae -1.04919782 -0.652745952"
## [1887] "Prevotella_jejuni -0.68027559 -0.455074409"
## [1888] "Prevotella_salivae -0.54411633 -0.126746508"
## [1889] "Prevotella_sp_oral_taxon_306 -0.56230653 -0.173871895"
## [1890] "Prevotella_veroralis -0.55214752 -0.129329976"
## [1891] "Lactobacillus_fermentum -0.77963041 -0.340180455"
## [1892] "Megasphaera_micronuciformis -0.50305048 -0.105666289"
## [1893] "Neisseria_flavescens -0.39691282 0.180032137"
## [1894] "Staphylococcus_haemolyticus -0.80711031 -0.244730792"
## [1895] "Candida_orthopsilosis -0.49954440 -0.085471075"
## [1896] "Campylobacter_concisus -0.70815137 -0.017531294"
## [1897] " BAL_073_d_lyPMA BAL_073_c_molysis"
## [1898] "Actinomyces_naeslundii -0.83530319 -1.5329041"
## [1899] "Actinomyces_odontolyticus 0.40464262 -0.3051623"
## [1900] "Actinomyces_sp_HPA0247 0.60282678 -1.0771641"
## [1901] "Actinomyces_sp_S6_Spd3 -0.82282541 -0.8398286"
## [1902] "Actinomyces_sp_oral_taxon_181 -0.61662948 0.5829965"
## [1903] "Scardovia_wiggsiae -0.37256880 -1.4110097"
## [1904] "Corynebacterium_tuberculostearicum -0.86844023 -1.5625963"
## [1905] "Rothia_mucilaginosa -0.65383822 0.6633640"
## [1906] "Cutibacterium_acnes 0.91019886 -0.3735408"
## [1907] "Atopobium_deltae -0.58554648 -1.3451654"
## [1908] "Atopobium_parvulum -1.20665711 0.4134890"
## [1909] "Atopobium_rimae -0.83112820 0.3683072"
## [1910] "Olsenella_scatoligenes -0.10199853 -0.3803807"
## [1911] "Prevotella_melaninogenica -1.38988975 0.7465628"
## [1912] "Prevotella_oris 0.01156557 -1.4388786"
## [1913] "Gemella_asaccharolytica -0.55430637 -1.3280540"
## [1914] "Gemella_bergeri -0.66400693 -1.5255486"
## [1915] "Gemella_haemolysans -1.57027378 0.8777867"
## [1916] "Gemella_morbillorum -0.67342097 -1.1669672"
## [1917] "Gemella_sanguinis -0.86033313 -0.9590452"
## [1918] "Staphylococcus_argenteus -0.43875412 -1.0715951"
## [1919] "Staphylococcus_aureus -0.46994451 -1.0817315"
## [1920] "Staphylococcus_epidermidis -0.95873044 -1.2149730"
## [1921] "Staphylococcus_schweitzeri -1.04141709 -0.8279932"
## [1922] "Enterococcus_faecalis -1.55719580 -0.9386476"
## [1923] "Streptococcus_anginosus -1.23503793 0.7625037"
## [1924] "Streptococcus_mitis -0.28900904 0.1297114"
## [1925] "Streptococcus_oralis -0.19850269 0.1380970"
## [1926] "Streptococcus_parasanguinis 0.03080210 -0.1121103"
## [1927] "Streptococcus_pneumoniae -0.05361998 -0.9788370"
## [1928] "Eubacterium_infirmum -0.89381875 0.8323291"
## [1929] "Peptostreptococcus_stomatis -1.63812985 -0.7881666"
## [1930] "Bulleidia_extructa -0.95873044 -0.4911836"
## [1931] "Veillonella_parvula -0.90766362 -0.7455650"
## [1932] "Finegoldia_magna -1.75934314 -0.8467745"
## [1933] "Parvimonas_micra -0.22820179 -1.2728531"
## [1934] "Fusobacterium_nucleatum -0.85380710 0.7837631"
## [1935] "Cupriavidus_sp 10.36353569 11.5090443"
## [1936] "Sutterella_parvirubra 3.98649121 3.4728578"
## [1937] "Cardiobacterium_valvarum 0.53022288 -0.6137894"
## [1938] "Candida_albicans -1.06606151 0.3810977"
## [1939] "Candida_dubliniensis 7.55339611 6.5059257"
## [1940] "Candida_parapsilosis 0.49704648 -0.4847980"
## [1941] "Alloprevotella_tannerae 0.04731401 0.1493471"
## [1942] "Prevotella_jejuni -0.76218199 0.4432673"
## [1943] "Prevotella_salivae -0.80977861 0.3607557"
## [1944] "Prevotella_sp_oral_taxon_306 -0.27611569 -1.2666465"
## [1945] "Prevotella_veroralis -0.26481040 -1.2595839"
## [1946] "Lactobacillus_fermentum 0.65808834 -1.4751456"
## [1947] "Megasphaera_micronuciformis -1.00855696 0.6084903"
## [1948] "Neisseria_flavescens -0.80067538 -0.9659814"
## [1949] "Staphylococcus_haemolyticus 0.37691774 -1.5785787"
## [1950] "Candida_orthopsilosis 1.46561136 -1.2809099"
## [1951] "Campylobacter_concisus -0.84844745 0.5966792"
## [1952] " BAL_073_b_host_zero BAL_073_a_control"
## [1953] "Actinomyces_naeslundii -0.90143443 -0.57626520"
## [1954] "Actinomyces_odontolyticus -1.10004635 0.66368061"
## [1955] "Actinomyces_sp_HPA0247 -0.98530029 0.86186478"
## [1956] "Actinomyces_sp_S6_Spd3 -0.33033112 -0.56378741"
## [1957] "Actinomyces_sp_oral_taxon_181 -0.87661925 -0.35759149"
## [1958] "Scardovia_wiggsiae -0.74851226 -0.11353081"
## [1959] "Corynebacterium_tuberculostearicum -0.85990266 -0.60940223"
## [1960] "Rothia_mucilaginosa -0.20034038 -0.39480022"
## [1961] "Cutibacterium_acnes -0.49291181 -0.64235517"
## [1962] "Atopobium_deltae -0.91651700 -0.32650848"
## [1963] "Atopobium_parvulum -0.78548488 0.33633049"
## [1964] "Atopobium_rimae -0.57371063 -0.57209020"
## [1965] "Olsenella_scatoligenes -0.82069345 0.15703946"
## [1966] "Prevotella_melaninogenica -0.81482141 0.66263782"
## [1967] "Prevotella_oris -0.83869052 0.45164426"
## [1968] "Gemella_asaccharolytica -0.67306834 -0.29526837"
## [1969] "Gemella_bergeri -0.90370553 -0.40496894"
## [1970] "Gemella_haemolysans -0.53423903 -1.31123579"
## [1971] "Gemella_morbillorum -0.42755979 -0.41438298"
## [1972] "Gemella_sanguinis -0.18153883 -0.60129514"
## [1973] "Staphylococcus_argenteus -0.27918204 -0.17971613"
## [1974] "Staphylococcus_aureus -0.29170152 -0.06701017"
## [1975] "Staphylococcus_epidermidis -0.45200005 -0.69969245"
## [1976] "Staphylococcus_schweitzeri -0.03816538 -0.78237910"
## [1977] "Enterococcus_faecalis -0.16917587 0.48971356"
## [1978] "Streptococcus_anginosus 0.11569534 -0.51260189"
## [1979] "Streptococcus_mitis -0.80388710 0.04508103"
## [1980] "Streptococcus_oralis -0.81474948 0.06620449"
## [1981] "Streptococcus_parasanguinis -1.19900801 0.28984009"
## [1982] "Streptococcus_pneumoniae -0.51901604 0.03145023"
## [1983] "Eubacterium_infirmum -0.57786985 -0.63478075"
## [1984] "Peptostreptococcus_stomatis -0.06292111 0.16226261"
## [1985] "Bulleidia_extructa -0.76626901 -0.69969245"
## [1986] "Veillonella_parvula -0.19755782 -0.64862563"
## [1987] "Finegoldia_magna -0.05843661 0.33490374"
## [1988] "Parvimonas_micra -0.34969793 0.03083620"
## [1989] "Fusobacterium_nucleatum -0.59823014 -0.59476911"
## [1990] "Cupriavidus_sp 12.69756914 5.88128432"
## [1991] "Sutterella_parvirubra 4.58017501 1.05447451"
## [1992] "Cardiobacterium_valvarum -1.25047320 0.78926088"
## [1993] "Candida_albicans 1.06834316 -3.77363111"
## [1994] "Candida_dubliniensis 7.39752383 3.69529909"
## [1995] "Candida_parapsilosis 0.58597640 -2.19943133"
## [1996] "Alloprevotella_tannerae -1.25597829 0.59668697"
## [1997] "Prevotella_jejuni -1.05034078 -0.50314400"
## [1998] "Prevotella_salivae -1.35869988 -0.55074061"
## [1999] "Prevotella_sp_oral_taxon_306 -0.67839430 0.49697080"
## [2000] "Prevotella_veroralis -0.65577123 0.39969438"
## [2001] "Lactobacillus_fermentum -0.67590625 0.18495387"
## [2002] "Megasphaera_micronuciformis -0.47331589 -0.74951896"
## [2003] "Neisseria_flavescens -0.44881064 -0.54163738"
## [2004] "Staphylococcus_haemolyticus -0.65012853 0.47550341"
## [2005] "Candida_orthopsilosis -0.16707492 -1.73439576"
## [2006] "Campylobacter_concisus -0.85282655 -0.58940946"
## [2007] " BAL_070_6_host_zero BAL_070_5_qiaamp"
## [2008] "Actinomyces_naeslundii -1.0839860356 -1.22165405"
## [2009] "Actinomyces_odontolyticus -4.6361900380 -4.85876548"
## [2010] "Actinomyces_sp_HPA0247 -5.3109260088 -5.55555887"
## [2011] "Actinomyces_sp_S6_Spd3 0.6775072788 0.64351090"
## [2012] "Actinomyces_sp_oral_taxon_181 -2.9866948773 -2.17234268"
## [2013] "Scardovia_wiggsiae -2.3934362354 -2.48454542"
## [2014] "Corynebacterium_tuberculostearicum -0.9916381719 -1.25565015"
## [2015] "Rothia_mucilaginosa -0.4566319922 -0.53544281"
## [2016] "Cutibacterium_acnes -1.3649650539 -1.95563206"
## [2017] "Atopobium_deltae -1.2681819358 -1.11851470"
## [2018] "Atopobium_parvulum 0.9790277001 0.93434289"
## [2019] "Atopobium_rimae 0.1773814619 0.17717359"
## [2020] "Olsenella_scatoligenes -2.5554454057 -2.55615757"
## [2021] "Prevotella_melaninogenica 2.5615585724 2.69470821"
## [2022] "Prevotella_oris 5.7173004655 5.99188733"
## [2023] "Gemella_asaccharolytica -1.0562569676 -1.06943712"
## [2024] "Gemella_bergeri -1.1574853517 -1.28316310"
## [2025] "Gemella_haemolysans 0.8027370982 2.83472112"
## [2026] "Gemella_morbillorum -0.1617502245 -0.09954615"
## [2027] "Gemella_sanguinis 1.0113232761 0.95917387"
## [2028] "Staphylococcus_argenteus 5.7637590495 5.73335435"
## [2029] "Staphylococcus_aureus 9.0442257505 9.01328991"
## [2030] "Staphylococcus_epidermidis -0.4520000452 -0.45321246"
## [2031] "Staphylococcus_schweitzeri 1.9326674554 1.90670025"
## [2032] "Enterococcus_faecalis 4.0723747627 3.99804014"
## [2033] "Streptococcus_anginosus 6.6047939878 6.55908526"
## [2034] "Streptococcus_mitis -5.0617957138 -5.09565677"
## [2035] "Streptococcus_oralis -5.0684732497 -5.15540594"
## [2036] "Streptococcus_parasanguinis -5.3367340612 -4.91576118"
## [2037] "Streptococcus_pneumoniae -4.8279869538 -4.90060442"
## [2038] "Eubacterium_infirmum 0.4189992425 0.43919770"
## [2039] "Peptostreptococcus_stomatis 4.4954610906 4.46785427"
## [2040] "Bulleidia_extructa -0.7662690108 -0.87071221"
## [2041] "Veillonella_parvula 1.1836762383 0.99835031"
## [2042] "Finegoldia_magna 4.9929926594 4.93291934"
## [2043] "Parvimonas_micra -4.1675189981 -4.14478119"
## [2044] "Fusobacterium_nucleatum 0.0006769886 -0.24401705"
## [2045] "Cupriavidus_sp 5.1928715875 4.56933550"
## [2046] "Sutterella_parvirubra -0.9707893347 -2.50215447"
## [2047] "Cardiobacterium_valvarum -5.3749808966 -4.85309353"
## [2048] "Candida_albicans 3.8707438332 3.73673216"
## [2049] "Candida_dubliniensis -3.6117066520 -3.76864031"
## [2050] "Candida_parapsilosis -3.5026473313 -3.76914314"
## [2051] "Alloprevotella_tannerae 5.6684560771 5.87523655"
## [2052] "Prevotella_jejuni -0.9875690921 -0.61750390"
## [2053] "Prevotella_salivae -1.1805839625 -0.36600042"
## [2054] "Prevotella_sp_oral_taxon_306 5.6622145827 5.77830236"
## [2055] "Prevotella_veroralis 6.0177103100 6.12133402"
## [2056] "Lactobacillus_fermentum -4.9898257816 -5.09354994"
## [2057] "Megasphaera_micronuciformis 1.1799438281 1.15020924"
## [2058] "Neisseria_flavescens 0.4512220728 0.50311990"
## [2059] "Staphylococcus_haemolyticus -4.9761362156 -5.13311799"
## [2060] "Candida_orthopsilosis -4.3427097896 -4.67517927"
## [2061] "Campylobacter_concisus -0.1583177418 -0.01364257"
## [2062] " BAL_070_4_benzonase BAL_070_3_molysis"
## [2063] "Actinomyces_naeslundii -1.78456740 -1.71545566"
## [2064] "Actinomyces_odontolyticus -4.33462666 -3.84130598"
## [2065] "Actinomyces_sp_HPA0247 -4.95596133 -5.40278982"
## [2066] "Actinomyces_sp_S6_Spd3 1.00334049 0.16800977"
## [2067] "Actinomyces_sp_oral_taxon_181 -3.58265355 -1.52707914"
## [2068] "Scardovia_wiggsiae -2.79872850 -3.05593370"
## [2069] "Corynebacterium_tuberculostearicum -1.76777688 -1.69433176"
## [2070] "Rothia_mucilaginosa -1.64719433 0.40707244"
## [2071] "Cutibacterium_acnes -2.49984916 -1.24559406"
## [2072] "Atopobium_deltae -0.62112377 -1.69683031"
## [2073] "Atopobium_parvulum 2.21429169 2.17800157"
## [2074] "Atopobium_rimae 0.39895310 1.11939934"
## [2075] "Olsenella_scatoligenes -2.82210824 -2.11513262"
## [2076] "Prevotella_melaninogenica 3.02806988 4.12294281"
## [2077] "Prevotella_oris 6.48626325 5.11711241"
## [2078] "Gemella_asaccharolytica -0.85966986 -1.71124265"
## [2079] "Gemella_bergeri -0.35312354 -1.77932840"
## [2080] "Gemella_haemolysans 0.72608874 2.21476283"
## [2081] "Gemella_morbillorum -0.03641606 -0.90115764"
## [2082] "Gemella_sanguinis 1.18036693 0.23381694"
## [2083] "Staphylococcus_argenteus 5.87387052 4.97134598"
## [2084] "Staphylococcus_aureus 9.11540626 8.25419576"
## [2085] "Staphylococcus_epidermidis -1.72923791 -1.21497297"
## [2086] "Staphylococcus_schweitzeri 2.07573768 1.14283965"
## [2087] "Enterococcus_faecalis 4.25431735 3.30290303"
## [2088] "Streptococcus_anginosus 5.29410839 7.25160239"
## [2089] "Streptococcus_mitis -4.83743849 -4.12819724"
## [2090] "Streptococcus_oralis -4.88556032 -4.11562672"
## [2091] "Streptococcus_parasanguinis -4.77328299 -4.24983638"
## [2092] "Streptococcus_pneumoniae -4.58732156 -5.28780787"
## [2093] "Eubacterium_infirmum 0.57219368 1.82919824"
## [2094] "Peptostreptococcus_stomatis 4.59152699 3.77021564"
## [2095] "Bulleidia_extructa -1.72923791 -0.49118362"
## [2096] "Veillonella_parvula 1.46048637 0.63566905"
## [2097] "Finegoldia_magna 5.13620063 4.20465477"
## [2098] "Parvimonas_micra -4.80532347 -5.09067420"
## [2099] "Fusobacterium_nucleatum 0.42926540 1.38267026"
## [2100] "Cupriavidus_sp 4.60694633 4.00434674"
## [2101] "Sutterella_parvirubra -2.81030996 -2.07810654"
## [2102] "Cardiobacterium_valvarum -5.47468419 -4.73829709"
## [2103] "Candida_albicans 3.33898708 3.18349841"
## [2104] "Candida_dubliniensis -4.37922261 -4.50330476"
## [2105] "Candida_parapsilosis -4.89134485 -4.57342176"
## [2106] "Alloprevotella_tannerae 6.27168842 7.07378148"
## [2107] "Prevotella_jejuni -0.39230273 0.50603899"
## [2108] "Prevotella_salivae 0.05136941 0.53887159"
## [2109] "Prevotella_sp_oral_taxon_306 6.16673699 5.07396237"
## [2110] "Prevotella_veroralis 6.54415156 5.41389764"
## [2111] "Lactobacillus_fermentum -4.65409999 -5.78906510"
## [2112] "Megasphaera_micronuciformis 1.54759343 2.26175001"
## [2113] "Neisseria_flavescens 1.08006485 -0.06594873"
## [2114] "Staphylococcus_haemolyticus -4.57073848 -5.90458638"
## [2115] "Candida_orthopsilosis -4.26110594 -5.45654477"
## [2116] "Campylobacter_concisus 0.67697751 1.29118800"
## [2117] " BAL_070_2_lyPMA BAL_070_1_control"
## [2118] "Actinomyces_naeslundii -1.01785480 -0.758816802"
## [2119] "Actinomyces_odontolyticus -3.13150107 -2.872463076"
## [2120] "Actinomyces_sp_HPA0247 -3.72279894 -3.463760944"
## [2121] "Actinomyces_sp_S6_Spd3 0.18501300 0.444050991"
## [2122] "Actinomyces_sp_oral_taxon_181 -2.72670511 -2.467667119"
## [2123] "Scardovia_wiggsiae -2.01749277 -1.758454778"
## [2124] "Corynebacterium_tuberculostearicum -1.00017574 -0.741137745"
## [2125] "Rothia_mucilaginosa -0.91012983 -0.651091836"
## [2126] "Cutibacterium_acnes 0.03814562 -1.514408410"
## [2127] "Atopobium_deltae -0.93721141 -0.678173416"
## [2128] "Atopobium_parvulum 0.55785547 2.100843069"
## [2129] "Atopobium_rimae -0.08003611 0.179001884"
## [2130] "Olsenella_scatoligenes -1.83675049 -1.577712498"
## [2131] "Prevotella_melaninogenica 1.98649023 4.039017801"
## [2132] "Prevotella_oris 6.56755656 7.007635249"
## [2133] "Gemella_asaccharolytica -0.93749500 -0.678457003"
## [2134] "Gemella_bergeri -0.91778675 -0.658748758"
## [2135] "Gemella_haemolysans -0.23329765 0.025740339"
## [2136] "Gemella_morbillorum -0.40761141 -0.148573418"
## [2137] "Gemella_sanguinis 0.33252898 0.591566971"
## [2138] "Staphylococcus_argenteus 5.60418697 5.863224967"
## [2139] "Staphylococcus_aureus 8.86598276 9.268917102"
## [2140] "Staphylococcus_epidermidis -0.95873044 -0.699692445"
## [2141] "Staphylococcus_schweitzeri 0.92941574 1.188453739"
## [2142] "Enterococcus_faecalis 2.68435483 4.731264193"
## [2143] "Streptococcus_anginosus 5.25406072 5.976496758"
## [2144] "Streptococcus_mitis -4.54691765 -4.212827576"
## [2145] "Streptococcus_oralis -4.45222645 -4.187519283"
## [2146] "Streptococcus_parasanguinis -4.10692396 -3.847885966"
## [2147] "Streptococcus_pneumoniae -4.36259090 -4.277520690"
## [2148] "Eubacterium_infirmum 0.10305035 0.362088339"
## [2149] "Peptostreptococcus_stomatis 2.92025235 4.720644812"
## [2150] "Bulleidia_extructa -0.95873044 -0.699692445"
## [2151] "Veillonella_parvula 0.47357043 0.732608425"
## [2152] "Finegoldia_magna 3.29208613 5.386333016"
## [2153] "Parvimonas_micra -4.04602286 -3.786984868"
## [2154] "Fusobacterium_nucleatum -0.25489998 0.004138018"
## [2155] "Cupriavidus_sp 2.85883814 -1.623413232"
## [2156] "Sutterella_parvirubra -1.56447313 -4.496489836"
## [2157] "Cardiobacterium_valvarum -3.59428482 -3.335246824"
## [2158] "Candida_albicans 1.73633916 -0.971230441"
## [2159] "Candida_dubliniensis -3.45583437 -7.313931390"
## [2160] "Candida_parapsilosis -3.59157725 -6.288055059"
## [2161] "Alloprevotella_tannerae 6.97174838 7.521121337"
## [2162] "Prevotella_jejuni -0.69941031 -0.440372312"
## [2163] "Prevotella_salivae -0.63166269 -0.372624698"
## [2164] "Prevotella_sp_oral_taxon_306 6.06449319 6.837579689"
## [2165] "Prevotella_veroralis 6.40867113 7.073175915"
## [2166] "Lactobacillus_fermentum -3.65583120 -4.128965669"
## [2167] "Megasphaera_micronuciformis 0.64470276 0.903740752"
## [2168] "Neisseria_flavescens 0.09935734 0.358395330"
## [2169] "Staphylococcus_haemolyticus -3.94908995 -3.850504278"
## [2170] "Candida_orthopsilosis -2.71002350 -5.910030622"
## [2171] "Campylobacter_concisus -0.15393865 0.105099347"
## [2172] ""
## [2173] "$ranef"
## [2174] " BAL_070 BAL_073 BAL_074"
## [2175] "Actinomyces_naeslundii -5.532949e-02 1.272221e-01 -6.345372e-02"
## [2176] "Actinomyces_odontolyticus -3.895799e+00 -3.596549e-01 -1.534597e+00"
## [2177] "Actinomyces_sp_HPA0247 -4.739571e+00 -4.139454e-01 -1.590882e+00"
## [2178] "Actinomyces_sp_S6_Spd3 1.298862e+00 2.910240e-01 -6.597028e-01"
## [2179] "Actinomyces_sp_oral_taxon_181 -1.853416e+00 2.566600e-01 1.622031e+00"
## [2180] "Scardovia_wiggsiae -1.069491e+00 5.754334e-01 3.388729e-01"
## [2181] "Corynebacterium_tuberculostearicum -3.853897e-02 9.319654e-02 -4.739426e-02"
## [2182] "Rothia_mucilaginosa -1.447323e+00 -1.191031e+00 -1.425774e+00"
## [2183] "Cutibacterium_acnes -7.706113e-01 1.014420e-01 2.177416e-01"
## [2184] "Atopobium_deltae 5.765945e-02 4.093244e-01 -2.899187e-01"
## [2185] "Atopobium_parvulum 1.407506e+00 -3.570066e-01 -1.205303e+00"
## [2186] "Atopobium_rimae 7.661625e-01 1.507044e-02 -7.579717e-01"
## [2187] "Olsenella_scatoligenes -1.092870e+00 6.418816e-01 -3.950760e-01"
## [2188] "Prevotella_melaninogenica 2.750334e+00 -6.260455e-01 -1.638226e+00"
## [2189] "Prevotella_oris 5.786820e+00 -7.691707e-01 -1.949661e+00"
## [2190] "Gemella_asaccharolytica 6.095779e-02 4.441464e-01 -3.123543e-01"
## [2191] "Gemella_bergeri 7.081540e-02 3.245952e-01 -2.423106e-01"
## [2192] "Gemella_haemolysans 1.039321e+00 -2.976548e-01 2.134548e-01"
## [2193] "Gemella_morbillorum 6.444724e-01 3.786629e-01 -4.835694e-01"
## [2194] "Gemella_sanguinis 1.462337e+00 2.694749e-01 -7.026953e-01"
## [2195] "Staphylococcus_argenteus 5.428335e+00 -6.146064e-01 -1.792606e+00"
## [2196] "Staphylococcus_aureus 8.062891e+00 -1.273037e+00 -2.458152e+00"
## [2197] "Staphylococcus_epidermidis 3.078796e-18 1.914395e-18 -2.609276e-18"
## [2198] "Staphylococcus_schweitzeri 2.118605e+00 1.477721e-01 -8.572653e-01"
## [2199] "Enterococcus_faecalis 3.981230e+00 -2.603202e-01 -1.392576e+00"
## [2200] "Streptococcus_anginosus 4.827154e+00 -1.661945e+00 8.009691e-01"
## [2201] "Streptococcus_mitis -5.176923e+00 -9.190143e-01 7.962916e+00"
## [2202] "Streptococcus_oralis -5.098194e+00 -8.444699e-01 7.582755e+00"
## [2203] "Streptococcus_parasanguinis -4.376416e+00 -2.386900e-01 6.522683e-01"
## [2204] "Streptococcus_pneumoniae -5.365773e+00 -1.056802e+00 1.017138e+01"
## [2205] "Eubacterium_infirmum 9.267988e-01 -7.007027e-02 -8.400575e-01"
## [2206] "Peptostreptococcus_stomatis 4.250983e+00 -3.073994e-01 -1.435424e+00"
## [2207] "Bulleidia_extructa 0.000000e+00 0.000000e+00 0.000000e+00"
## [2208] "Veillonella_parvula 1.616227e+00 2.349925e-01 -7.365955e-01"
## [2209] "Finegoldia_magna 4.646208e+00 -4.052211e-01 -1.538267e+00"
## [2210] "Parvimonas_micra -3.076086e+00 7.417355e-01 2.293806e+00"
## [2211] "Fusobacterium_nucleatum 5.602525e-01 -3.865461e-02 -6.628484e-01"
## [2212] "Cupriavidus_sp -4.898021e+00 2.606676e+00 -5.390897e-01"
## [2213] "Sutterella_parvirubra -3.474142e+00 2.076822e+00 1.110335e-01"
## [2214] "Cardiobacterium_valvarum -3.745446e+00 3.790614e-01 -7.431544e-01"
## [2215] "Candida_albicans 7.398290e-01 -2.062572e+00 8.149867e+00"
## [2216] "Candida_dubliniensis -5.843223e+00 5.166007e+00 6.149703e+00"
## [2217] "Candida_parapsilosis -5.046777e+00 -9.581538e-01 1.430320e+00"
## [2218] "Alloprevotella_tannerae 5.554702e+00 -1.369732e+00 -2.515086e+00"
## [2219] "Prevotella_jejuni 1.303179e-01 6.754625e-02 -4.526960e-01"
## [2220] "Prevotella_salivae 2.381185e-01 6.000263e-02 -4.142540e-01"
## [2221] "Prevotella_sp_oral_taxon_306 5.627880e+00 -7.127290e-01 -1.895801e+00"
## [2222] "Prevotella_veroralis 5.898963e+00 -7.745181e-01 -1.958552e+00"
## [2223] "Lactobacillus_fermentum -5.007356e+00 -6.934368e-01 -1.867189e+00"
## [2224] "Megasphaera_micronuciformis 1.527043e+00 -1.262163e-01 -1.017193e+00"
## [2225] "Neisseria_flavescens 1.204134e+00 3.041014e-01 -6.348563e-01"
## [2226] "Staphylococcus_haemolyticus -5.191467e+00 -8.654589e-01 -2.042500e+00"
## [2227] "Candida_orthopsilosis -4.821127e+00 -6.454920e-01 -1.781619e+00"
## [2228] "Campylobacter_concisus 6.789714e-01 -1.553736e-02 -7.114529e-01"
## [2229] " BAL_078 BAL_079"
## [2230] "Actinomyces_naeslundii 6.740570e-03 -1.517947e-02"
## [2231] "Actinomyces_odontolyticus -1.102061e+00 6.892112e+00"
## [2232] "Actinomyces_sp_HPA0247 -1.157612e+00 7.902010e+00"
## [2233] "Actinomyces_sp_S6_Spd3 -3.097077e-01 -6.204759e-01"
## [2234] "Actinomyces_sp_oral_taxon_181 -3.670394e-01 3.417639e-01"
## [2235] "Scardovia_wiggsiae 1.122713e-01 4.291305e-02"
## [2236] "Corynebacterium_tuberculostearicum 4.362017e-03 -1.162533e-02"
## [2237] "Rothia_mucilaginosa -1.919566e+00 5.983693e+00"
## [2238] "Cutibacterium_acnes 6.278465e-01 -1.764189e-01"
## [2239] "Atopobium_deltae -3.250343e-02 -1.445617e-01"
## [2240] "Atopobium_parvulum -2.815164e-01 4.363197e-01"
## [2241] "Atopobium_rimae -4.733885e-01 4.501272e-01"
## [2242] "Olsenella_scatoligenes -1.333644e-02 8.594011e-01"
## [2243] "Prevotella_melaninogenica -1.265608e+00 7.795448e-01"
## [2244] "Prevotella_oris -1.515082e+00 -1.552906e+00"
## [2245] "Gemella_asaccharolytica -3.386052e-02 -1.588894e-01"
## [2246] "Gemella_bergeri -3.361319e-02 -1.194868e-01"
## [2247] "Gemella_haemolysans 3.004329e-01 -1.255554e+00"
## [2248] "Gemella_morbillorum -1.661522e-01 -3.734137e-01"
## [2249] "Gemella_sanguinis -3.448063e-01 -6.843102e-01"
## [2250] "Staphylococcus_argenteus -1.358944e+00 -1.662178e+00"
## [2251] "Staphylococcus_aureus -2.021871e+00 -2.309831e+00"
## [2252] "Staphylococcus_epidermidis -9.439578e-19 -1.439957e-18"
## [2253] "Staphylococcus_schweitzeri -4.872767e-01 -9.218351e-01"
## [2254] "Enterococcus_faecalis -9.757538e-01 -1.352581e+00"
## [2255] "Streptococcus_anginosus -2.378629e+00 -1.587550e+00"
## [2256] "Streptococcus_mitis -1.651039e+00 -2.159401e-01"
## [2257] "Streptococcus_oralis -1.575775e+00 -6.431654e-02"
## [2258] "Streptococcus_parasanguinis -9.500523e-01 4.912890e+00"
## [2259] "Streptococcus_pneumoniae -1.797605e+00 -1.951198e+00"
## [2260] "Eubacterium_infirmum -5.565989e-01 5.399278e-01"
## [2261] "Peptostreptococcus_stomatis -1.020159e+00 -1.488000e+00"
## [2262] "Bulleidia_extructa 0.000000e+00 0.000000e+00"
## [2263] "Veillonella_parvula -3.789208e-01 -7.357028e-01"
## [2264] "Finegoldia_magna -1.121154e+00 -1.581567e+00"
## [2265] "Parvimonas_micra 8.537160e-02 -4.482744e-02"
## [2266] "Fusobacterium_nucleatum -4.330613e-01 5.743118e-01"
## [2267] "Cupriavidus_sp 2.288712e+00 5.417228e-01"
## [2268] "Sutterella_parvirubra 2.576907e+00 -1.290621e+00"
## [2269] "Cardiobacterium_valvarum -3.300284e-01 4.439568e+00"
## [2270] "Candida_albicans -2.781657e+00 -4.045468e+00"
## [2271] "Candida_dubliniensis -2.388425e+00 -3.084062e+00"
## [2272] "Candida_parapsilosis 6.740952e+00 -2.166340e+00"
## [2273] "Alloprevotella_tannerae -2.093442e+00 4.235589e-01"
## [2274] "Prevotella_jejuni -2.611770e-01 5.160088e-01"
## [2275] "Prevotella_salivae -2.396639e-01 3.557968e-01"
## [2276] "Prevotella_sp_oral_taxon_306 -1.460272e+00 -1.559078e+00"
## [2277] "Prevotella_veroralis -1.522669e+00 -1.643225e+00"
## [2278] "Lactobacillus_fermentum 8.945478e+00 -1.377496e+00"
## [2279] "Megasphaera_micronuciformis -6.891937e-01 3.055592e-01"
## [2280] "Neisseria_flavescens -2.891939e-01 -5.841852e-01"
## [2281] "Staphylococcus_haemolyticus 9.649496e+00 -1.550071e+00"
## [2282] "Candida_orthopsilosis 8.805083e+00 -1.556845e+00"
## [2283] "Campylobacter_concisus -4.552626e-01 5.032814e-01"
## [2284] ""
## [2285] "$fits"
## [2286] "NULL"
## [2287] ""maaslin_bal <- read.csv("/Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/all_results.tsv", sep = "\t")
maaslin_bal_transformed_otu <- read.csv("/Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/features/filtered_data_norm_transformed.tsv",
sep = "\t")MaAslin with CLR (Nasal)
#feature ~ lypma + benzonase + host_zero + molysis + qiaamp + (1|subject_id)
#for nasal
capture.output(
maaslin_all2 =
Maaslin2(input_data = subset_samples(phyloseq$phyloseq_count_filtered, sample_type == "Nasal") %>%
otu_table %>% t %>% data.frame(),
input_metadata = subset_samples(phyloseq$phyloseq_count_filtered, sample_type == "Nasal") %>%
sample_data %>% data.frame(check.names = F),
output = "/Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw",
fixed_effects = c("lypma", "benzonase", "host_zero", "molysis", "qiaamp"),
transform = "NONE",
# CLR does the normalization and transformation at once.
#https://forum.biobakery.org/t/questions-about-normalization-method-clr-vs-tss/4352/2
normalization = "CLR",
random_effects = c("subject_id"),
plot_heatmap = F,
plot_scatter = F))## [1] "[1] \"Warning: Deleting existing log file: /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/maaslin2.log\""
## [2] "2023-10-25 21:20:21.83353 INFO::Writing function arguments to log file"
## [3] "2023-10-25 21:20:21.842674 INFO::Verifying options selected are valid"
## [4] "2023-10-25 21:20:21.843712 INFO::Determining format of input files"
## [5] "2023-10-25 21:20:21.844474 INFO::Input format is data samples as rows and metadata samples as rows"
## [6] "2023-10-25 21:20:21.849543 INFO::Formula for random effects: expr ~ (1 | subject_id)"
## [7] "2023-10-25 21:20:21.850401 INFO::Formula for fixed effects: expr ~ lypma + benzonase + host_zero + molysis + qiaamp"
## [8] "2023-10-25 21:20:21.851628 INFO::Filter data based on min abundance and min prevalence"
## [9] "2023-10-25 21:20:21.852524 INFO::Total samples in data: 35"
## [10] "2023-10-25 21:20:21.853191 INFO::Min samples required with min abundance for a feature not to be filtered: 3.500000"
## [11] "2023-10-25 21:20:21.856211 INFO::Total filtered features: 174"
## [12] "2023-10-25 21:20:21.857087 INFO::Filtered feature names from abundance and prevalence filtering: Actinobaculum_sp_oral_taxon_183, Actinomyces_georgiae, Actinomyces_graevenitzii, Actinomyces_hongkongensis, Actinomyces_johnsonii, Actinomyces_massiliensis, Actinomyces_meyeri, Actinomyces_naeslundii, Actinomyces_odontolyticus, Actinomyces_oris, Actinomyces_sp_HMSC035G02, Actinomyces_sp_HPA0247, Actinomyces_sp_ICM47, Actinomyces_sp_S6_Spd3, Actinomyces_sp_oral_taxon_170, Actinomyces_sp_oral_taxon_180, Actinomyces_sp_oral_taxon_181, Actinomyces_sp_oral_taxon_414, Actinomyces_sp_oral_taxon_448, Actinomyces_sp_oral_taxon_897, Actinomyces_viscosus, Alloscardovia_omnicolens, Bifidobacterium_dentium, Bifidobacterium_longum, Scardovia_wiggsiae, Corynebacterium_durum, Corynebacterium_matruchotii, Corynebacterium_tuberculostearicum, Rothia_aeria, Rothia_dentocariosa, Propionibacterium_acidifaciens, Pseudopropionibacterium_propionicum, Atopobium_deltae, Atopobium_parvulum, Atopobium_rimae, Olsenella_profusa, Olsenella_scatoligenes, Olsenella_uli, Collinsella_stercoris, Enorma_massiliensis, Asaccharobacter_celatus, Denitrobacterium_detoxificans, Enterorhabdus_caecimuris, Slackia_exigua, Rubrobacter_radiotolerans, Porphyromonas_endodontalis, Porphyromonas_somerae, Prevotella_histicola, Prevotella_melaninogenica, Prevotella_oris, Kouleothrix_aurantiaca, Hydrogenibacillus_schlegelii, Gemella_bergeri, Gemella_morbillorum, Brochothrix_campestris, Staphylococcus_schweitzeri, Abiotrophia_defectiva, Abiotrophia_sp_HMSC24B09, Granulicatella_adiacens, Granulicatella_elegans, Enterococcus_faecalis, Lactobacillus_rhamnosus, Streptococcus_anginosus, Streptococcus_australis, Streptococcus_cristatus, Streptococcus_gordonii, Streptococcus_infantis, Streptococcus_milleri, Streptococcus_mitis, Streptococcus_parasanguinis, Streptococcus_peroris, Streptococcus_pneumoniae, Streptococcus_pseudopneumoniae, Streptococcus_salivarius, Streptococcus_sanguinis, Streptococcus_sp_A12, Streptococcus_sp_F0442, Streptococcus_sp_HMSC034E03, Streptococcus_sp_HMSC067H01, Streptococcus_sp_HMSC071D03, Streptococcus_sp_HPH0090, Streptococcus_sp_M334, Streptococcus_vestibularis, Eubacterium_brachy, Eubacterium_infirmum, Eubacterium_nodatum, Eubacterium_sulci, Mogibacterium_diversum, Mogibacterium_pumilum, Mogibacterium_timidum, Lachnoanaerobaculum_saburreum, Oribacterium_parvum, Oribacterium_sinus, Oribacterium_sp_oral_taxon_078, Stomatobaculum_longum, Peptostreptococcus_stomatis, Bulleidia_extructa, Solobacterium_moorei, Veillonella_atypica, Veillonella_dispar, Veillonella_infantium, Veillonella_parvula, Veillonella_sp_T11011_6, Parvimonas_micra, Parvimonas_sp_oral_taxon_110, Parvimonas_sp_oral_taxon_393, Fusobacterium_nucleatum, Leptotrichia_wadei, Gemmata_obscuriglobus, Paludisphaera_borealis, Achromobacter_xylosoxidans, Anaerobiospirillum_thomasii, Cardiobacterium_hominis, Cardiobacterium_valvarum, Alkalilimnicola_ehrlichii, Escherichia_coli, Thiohalorhabdus_denitrificans, Pseudomonas_aeruginosa, Acholeplasma_oculi, Candida_albicans, Candida_dubliniensis, Candida_parapsilosis, Nakamurella_silvestris, Alloprevotella_tannerae, Prevotella_jejuni, Prevotella_pallens, Prevotella_salivae, Prevotella_sp_oral_taxon_306, Prevotella_veroralis, Tannerella_sp_oral_taxon_808, Tannerella_sp_oral_taxon_HOT_286, Capnocytophaga_gingivalis, Bacillus_ginsengihumi, Listeria_floridensis, Agitococcus_lubricus, Lactobacillus_fermentum, Lactobacillus_gasseri, Sharpea_azabuensis, Streptococcus_mutans, Oribacterium_asaccharolyticum, Megasphaera_micronuciformis, Neisseria_flavescens, Neisseria_subflava, Stenotrophomonas_maltophilia, Stenotrophomonas_pavanii, Stenotrophomonas_rhizophila, Bacillus_intestinalis, Listeria_innocua, Listeria_monocytogenes, Staphylococcus_haemolyticus, Streptococcus_sobrinus, Eggerthia_catenaformis, Leptotrichia_sp_oral_taxon_498, Rickettsia_felis, Haemophilus_parainfluenzae, Candida_orthopsilosis, Nannocystis_exedens, Campylobacter_concisus, Franconibacter_helveticus, Klebsiella_pneumoniae, Salmonella_enterica, Superficieibacter_electus, Pseudomonas_fluorescens, Saccharomyces_cerevisiae, S._cerevisiae.x.S._kudriavzevii, Saccharomyces_kudriavzevii, Cryptococcus_gattii_VGI, Cryptococcus_gattii_VGII, Cryptococcus_gattii_VGIII, Cryptococcus_neoformans, Listeria_marthii, Erwinia_persicina, Pseudomonas_formosensis, Pseudomonas_putida"
## [13] "2023-10-25 21:20:21.858691 INFO::Total filtered features with variance filtering: 0"
## [14] "2023-10-25 21:20:21.859655 INFO::Filtered feature names from variance filtering:"
## [15] "2023-10-25 21:20:21.860339 INFO::Running selected normalization method: CLR"
## [16] "2023-10-25 21:20:21.861619 INFO::Applying z-score to standardize continuous metadata"
## [17] "2023-10-25 21:20:21.871056 INFO::Running selected transform method: NONE"
## [18] "2023-10-25 21:20:21.871861 INFO::Running selected analysis method: LM"
## [19] "2023-10-25 21:20:21.872802 INFO::Fitting model to feature number 1, Aeriscardovia_aeriphila"
## [20] "2023-10-25 21:20:21.935442 INFO::Fitting model to feature number 2, Corynebacterium_accolens"
## [21] "2023-10-25 21:20:21.985893 INFO::Fitting model to feature number 3, Corynebacterium_atypicum"
## [22] "2023-10-25 21:20:22.026342 INFO::Fitting model to feature number 4, Corynebacterium_pseudodiphtheriticum"
## [23] "2023-10-25 21:20:22.064863 INFO::Fitting model to feature number 5, Corynebacterium_pseudogenitalium"
## [24] "2023-10-25 21:20:22.102267 INFO::Fitting model to feature number 6, Rothia_mucilaginosa"
## [25] "2023-10-25 21:20:22.139703 INFO::Fitting model to feature number 7, Cutibacterium_acnes"
## [26] "2023-10-25 21:20:22.176921 INFO::Fitting model to feature number 8, Cutibacterium_granulosum"
## [27] "2023-10-25 21:20:22.215816 INFO::Fitting model to feature number 9, Propionibacterium_humerusii"
## [28] "2023-10-25 21:20:22.254493 INFO::Fitting model to feature number 10, Propionibacterium_namnetense"
## [29] "2023-10-25 21:20:22.299755 INFO::Fitting model to feature number 11, Collinsella_aerofaciens"
## [30] "2023-10-25 21:20:22.337478 INFO::Fitting model to feature number 12, Collinsella_intestinalis"
## [31] "2023-10-25 21:20:22.374572 INFO::Fitting model to feature number 13, X.Collinsella._massiliensis"
## [32] "2023-10-25 21:20:22.409997 INFO::Fitting model to feature number 14, Slackia_isoflavoniconvertens"
## [33] "2023-10-25 21:20:22.444521 INFO::Fitting model to feature number 15, Thermoleophilum_album"
## [34] "2023-10-25 21:20:22.47955 INFO::Fitting model to feature number 16, Gemella_asaccharolytica"
## [35] "2023-10-25 21:20:22.518038 INFO::Fitting model to feature number 17, Gemella_haemolysans"
## [36] "2023-10-25 21:20:22.555966 INFO::Fitting model to feature number 18, Gemella_sanguinis"
## [37] "2023-10-25 21:20:22.601713 INFO::Fitting model to feature number 19, Staphylococcus_argenteus"
## [38] "2023-10-25 21:20:22.64051 INFO::Fitting model to feature number 20, Staphylococcus_aureus"
## [39] "2023-10-25 21:20:22.677259 INFO::Fitting model to feature number 21, Staphylococcus_epidermidis"
## [40] "2023-10-25 21:20:22.712404 INFO::Fitting model to feature number 22, Dolosigranulum_pigrum"
## [41] "2023-10-25 21:20:22.74799 INFO::Fitting model to feature number 23, Streptococcus_oralis"
## [42] "2023-10-25 21:20:22.784441 INFO::Fitting model to feature number 24, Limnochorda_pilosa"
## [43] "2023-10-25 21:20:22.826472 INFO::Fitting model to feature number 25, Anaerococcus_nagyae"
## [44] "2023-10-25 21:20:22.868324 INFO::Fitting model to feature number 26, Finegoldia_magna"
## [45] "2023-10-25 21:20:22.925311 INFO::Fitting model to feature number 27, Cupriavidus_sp"
## [46] "2023-10-25 21:20:22.995513 INFO::Fitting model to feature number 28, Sutterella_parvirubra"
## [47] "2023-10-25 21:20:23.056406 INFO::Fitting model to feature number 29, Malassezia_restricta"
## [48] "2023-10-25 21:20:23.115324 INFO::Counting total values for each feature"
## [49] "2023-10-25 21:20:23.120192 INFO::Writing filtered data to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/features/filtered_data.tsv"
## [50] "2023-10-25 21:20:23.122088 INFO::Writing filtered, normalized data to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/features/filtered_data_norm.tsv"
## [51] "2023-10-25 21:20:23.124167 INFO::Writing filtered, normalized, transformed data to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/features/filtered_data_norm_transformed.tsv"
## [52] "2023-10-25 21:20:23.126476 WARNING::Deleting existing residuals file: /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/residuals.rds"
## [53] "2023-10-25 21:20:23.127632 INFO::Writing residuals to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/residuals.rds"
## [54] "2023-10-25 21:20:23.128816 WARNING::Deleting existing fitted file: /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/fitted.rds"
## [55] "2023-10-25 21:20:23.129864 INFO::Writing fitted values to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/fitted.rds"
## [56] "2023-10-25 21:20:23.130992 WARNING::Deleting existing ranef file: /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/ranef.rds"
## [57] "2023-10-25 21:20:23.131972 INFO::Writing extracted random effects to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/ranef.rds"
## [58] "2023-10-25 21:20:23.132897 INFO::Writing all results to file (ordered by increasing q-values): /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/all_results.tsv"
## [59] "2023-10-25 21:20:23.135101 INFO::Writing the significant results (those which are less than or equal to the threshold of 0.250000 ) to file (ordered by increasing q-values): /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/significant_results.tsv"
## [60] "$results"
## [61] " feature metadata value coef"
## [62] "1 Cupriavidus_sp lypma lypma 1.567890416"
## [63] "2 Staphylococcus_epidermidis lypma lypma -2.198823123"
## [64] "3 Sutterella_parvirubra lypma lypma 2.273579933"
## [65] "4 X.Collinsella._massiliensis qiaamp qiaamp 1.066720978"
## [66] "5 Thermoleophilum_album qiaamp qiaamp 1.130330873"
## [67] "6 Finegoldia_magna host_zero host_zero 1.336736696"
## [68] "7 Aeriscardovia_aeriphila qiaamp qiaamp 1.028727873"
## [69] "8 Staphylococcus_aureus qiaamp qiaamp -0.750882971"
## [70] "9 Corynebacterium_accolens lypma lypma -1.109304558"
## [71] "10 Cutibacterium_acnes qiaamp qiaamp 0.375753472"
## [72] "11 Staphylococcus_aureus host_zero host_zero -0.723656219"
## [73] "12 Sutterella_parvirubra host_zero host_zero 1.523238956"
## [74] "13 Cupriavidus_sp benzonase benzonase 0.475830084"
## [75] "14 Staphylococcus_argenteus qiaamp qiaamp -0.750287409"
## [76] "15 Gemella_asaccharolytica host_zero host_zero -1.073213052"
## [77] "16 Malassezia_restricta benzonase benzonase -1.643270733"
## [78] "17 Malassezia_restricta molysis molysis -1.610551304"
## [79] "18 Limnochorda_pilosa host_zero host_zero -0.815785311"
## [80] "19 Propionibacterium_humerusii qiaamp qiaamp 1.015291781"
## [81] "20 Finegoldia_magna qiaamp qiaamp -1.026448931"
## [82] "21 Streptococcus_oralis molysis molysis 0.965142704"
## [83] "22 Staphylococcus_argenteus host_zero host_zero -0.620455647"
## [84] "23 Staphylococcus_aureus lypma lypma 0.509936966"
## [85] "24 Cupriavidus_sp molysis molysis 0.355157448"
## [86] "25 Malassezia_restricta lypma lypma -1.278743320"
## [87] "26 Collinsella_intestinalis lypma lypma 0.511908428"
## [88] "27 Propionibacterium_humerusii host_zero host_zero 0.817303520"
## [89] "28 Corynebacterium_pseudodiphtheriticum lypma lypma -1.155086822"
## [90] "29 Cutibacterium_granulosum lypma lypma -1.320331973"
## [91] "30 Gemella_haemolysans qiaamp qiaamp -0.748153964"
## [92] "31 Staphylococcus_argenteus lypma lypma 0.513003017"
## [93] "32 Sutterella_parvirubra molysis molysis 0.949048946"
## [94] "33 Streptococcus_oralis qiaamp qiaamp -0.704479846"
## [95] "34 Cupriavidus_sp qiaamp qiaamp 0.274129769"
## [96] "35 Dolosigranulum_pigrum qiaamp qiaamp -0.568798242"
## [97] "36 Limnochorda_pilosa lypma lypma 0.512571813"
## [98] "37 Rothia_mucilaginosa qiaamp qiaamp -0.682648207"
## [99] "38 Corynebacterium_pseudodiphtheriticum qiaamp qiaamp -0.921727144"
## [100] "39 Limnochorda_pilosa molysis molysis 0.480753292"
## [101] "40 Corynebacterium_atypicum lypma lypma -0.577983373"
## [102] "41 Collinsella_aerofaciens lypma lypma 0.511908428"
## [103] "42 Collinsella_intestinalis qiaamp qiaamp 0.350574284"
## [104] "43 Gemella_haemolysans lypma lypma 0.539145002"
## [105] "44 Staphylococcus_aureus molysis molysis -0.334011337"
## [106] "45 Staphylococcus_epidermidis qiaamp qiaamp -0.422391756"
## [107] "46 Limnochorda_pilosa qiaamp qiaamp 0.456169057"
## [108] "47 Rothia_mucilaginosa lypma lypma 0.588209974"
## [109] "48 Cutibacterium_acnes benzonase benzonase 0.169482172"
## [110] "49 Anaerococcus_nagyae host_zero host_zero -0.732230289"
## [111] "50 Streptococcus_oralis lypma lypma 0.538057037"
## [112] "51 Corynebacterium_atypicum benzonase benzonase 0.484758937"
## [113] "52 Corynebacterium_atypicum host_zero host_zero 0.486389170"
## [114] "53 Cutibacterium_granulosum benzonase benzonase -0.836802615"
## [115] "54 Propionibacterium_namnetense qiaamp qiaamp 0.583066147"
## [116] "55 Gemella_asaccharolytica lypma lypma -0.480287509"
## [117] "56 Propionibacterium_namnetense lypma lypma -0.574807931"
## [118] "57 Aeriscardovia_aeriphila benzonase benzonase 0.383307069"
## [119] "58 Anaerococcus_nagyae lypma lypma -0.617533524"
## [120] "59 Corynebacterium_atypicum qiaamp qiaamp 0.441624058"
## [121] "60 Cutibacterium_acnes molysis molysis 0.134865221"
## [122] "61 Rothia_mucilaginosa molysis molysis 0.452560758"
## [123] "62 Propionibacterium_humerusii lypma lypma -0.425463338"
## [124] "63 Sutterella_parvirubra qiaamp qiaamp 0.542287948"
## [125] "64 Propionibacterium_humerusii benzonase benzonase -0.414184361"
## [126] "65 Gemella_asaccharolytica molysis molysis -0.410052879"
## [127] "66 Gemella_sanguinis qiaamp qiaamp -0.455910958"
## [128] "67 Sutterella_parvirubra benzonase benzonase 0.520167275"
## [129] "68 Thermoleophilum_album lypma lypma 0.333777031"
## [130] "69 Collinsella_aerofaciens benzonase benzonase 0.332784237"
## [131] "70 Collinsella_aerofaciens host_zero host_zero 0.340505393"
## [132] "71 Gemella_sanguinis host_zero host_zero -0.419369694"
## [133] "72 Staphylococcus_argenteus molysis molysis -0.243821957"
## [134] "73 Anaerococcus_nagyae molysis molysis -0.498859524"
## [135] "74 Gemella_haemolysans molysis molysis 0.344939437"
## [136] "75 Cutibacterium_acnes host_zero host_zero 0.108821679"
## [137] "76 Aeriscardovia_aeriphila lypma lypma 0.251623168"
## [138] "77 Aeriscardovia_aeriphila host_zero host_zero 0.254692235"
## [139] "78 Corynebacterium_pseudodiphtheriticum benzonase benzonase 0.464361824"
## [140] "79 Corynebacterium_pseudogenitalium molysis molysis -0.523497199"
## [141] "80 Rothia_mucilaginosa benzonase benzonase 0.355245701"
## [142] "81 Propionibacterium_namnetense host_zero host_zero 0.386622063"
## [143] "82 Gemella_sanguinis lypma lypma 0.373097787"
## [144] "83 Gemella_sanguinis benzonase benzonase -0.350146619"
## [145] "84 Dolosigranulum_pigrum molysis molysis -0.275790405"
## [146] "85 Streptococcus_oralis host_zero host_zero -0.336934390"
## [147] "86 Finegoldia_magna benzonase benzonase -0.327427720"
## [148] "87 Slackia_isoflavoniconvertens benzonase benzonase 0.322710971"
## [149] "88 Cutibacterium_granulosum host_zero host_zero -0.485241111"
## [150] "89 Collinsella_intestinalis host_zero host_zero 0.170072973"
## [151] "90 Collinsella_intestinalis molysis molysis 0.170296243"
## [152] "91 Collinsella_aerofaciens molysis molysis 0.232874829"
## [153] "92 Staphylococcus_epidermidis molysis molysis -0.189167410"
## [154] "93 Anaerococcus_nagyae benzonase benzonase -0.345084242"
## [155] "94 Finegoldia_magna lypma lypma 0.255805451"
## [156] "95 Corynebacterium_pseudogenitalium qiaamp qiaamp -0.413293355"
## [157] "96 Gemella_asaccharolytica benzonase benzonase -0.239981083"
## [158] "97 Corynebacterium_atypicum molysis molysis -0.222388631"
## [159] "98 Corynebacterium_accolens benzonase benzonase 0.206107410"
## [160] "99 X.Collinsella._massiliensis lypma lypma 0.140146933"
## [161] "100 Cutibacterium_granulosum qiaamp qiaamp 0.353528751"
## [162] "101 X.Collinsella._massiliensis benzonase benzonase -0.134383260"
## [163] "102 X.Collinsella._massiliensis molysis molysis 0.131031511"
## [164] "103 Thermoleophilum_album molysis molysis 0.173852442"
## [165] "104 Malassezia_restricta host_zero host_zero -0.325291407"
## [166] "105 Staphylococcus_epidermidis benzonase benzonase 0.151080971"
## [167] "106 Slackia_isoflavoniconvertens lypma lypma 0.200122683"
## [168] "107 Slackia_isoflavoniconvertens host_zero host_zero -0.201042001"
## [169] "108 Dolosigranulum_pigrum benzonase benzonase 0.163397933"
## [170] "109 Cupriavidus_sp host_zero host_zero 0.074446292"
## [171] "110 Thermoleophilum_album benzonase benzonase 0.148624372"
## [172] "111 Gemella_sanguinis molysis molysis 0.191781403"
## [173] "112 Staphylococcus_epidermidis host_zero host_zero -0.125333511"
## [174] "113 Propionibacterium_humerusii molysis molysis 0.165483047"
## [175] "114 Propionibacterium_namnetense molysis molysis -0.193429025"
## [176] "115 Corynebacterium_pseudogenitalium host_zero host_zero 0.267491031"
## [177] "116 X.Collinsella._massiliensis host_zero host_zero -0.096317415"
## [178] "117 Finegoldia_magna molysis molysis -0.148294681"
## [179] "118 Corynebacterium_accolens host_zero host_zero -0.120649582"
## [180] "119 Corynebacterium_pseudogenitalium lypma lypma 0.202916940"
## [181] "120 Rothia_mucilaginosa host_zero host_zero -0.125017990"
## [182] "121 Cutibacterium_granulosum molysis molysis -0.195997755"
## [183] "122 Dolosigranulum_pigrum lypma lypma 0.094513818"
## [184] "123 Aeriscardovia_aeriphila molysis molysis -0.081860005"
## [185] "124 Gemella_asaccharolytica qiaamp qiaamp -0.102653442"
## [186] "125 Thermoleophilum_album host_zero host_zero 0.079425730"
## [187] "126 Streptococcus_oralis benzonase benzonase -0.076794543"
## [188] "127 Corynebacterium_accolens molysis molysis -0.063900064"
## [189] "128 Slackia_isoflavoniconvertens qiaamp qiaamp 0.076652283"
## [190] "129 Cutibacterium_acnes lypma lypma 0.020288114"
## [191] "130 Corynebacterium_pseudogenitalium benzonase benzonase -0.107090075"
## [192] "131 Corynebacterium_accolens qiaamp qiaamp 0.049290702"
## [193] "132 Corynebacterium_pseudodiphtheriticum host_zero host_zero 0.053939359"
## [194] "133 Propionibacterium_namnetense benzonase benzonase 0.042279111"
## [195] "134 Collinsella_aerofaciens qiaamp qiaamp -0.038116203"
## [196] "135 Collinsella_intestinalis benzonase benzonase 0.016493684"
## [197] "136 Slackia_isoflavoniconvertens molysis molysis 0.024032570"
## [198] "137 Gemella_haemolysans benzonase benzonase -0.033120424"
## [199] "138 Gemella_haemolysans host_zero host_zero 0.033776611"
## [200] "139 Staphylococcus_argenteus benzonase benzonase 0.018159381"
## [201] "140 Dolosigranulum_pigrum host_zero host_zero 0.026570736"
## [202] "141 Limnochorda_pilosa benzonase benzonase 0.017446658"
## [203] "142 Malassezia_restricta qiaamp qiaamp 0.068074788"
## [204] "143 Corynebacterium_pseudodiphtheriticum molysis molysis 0.019664859"
## [205] "144 Staphylococcus_aureus benzonase benzonase -0.004457288"
## [206] "145 Anaerococcus_nagyae qiaamp qiaamp 0.014074842"
## [207] " stderr pval name qval N N.not.zero"
## [208] "1 0.1442804 6.371412e-10 lypma 9.238547e-08 35 35"
## [209] "2 0.2612458 2.723272e-08 lypma 1.974372e-06 35 31"
## [210] "3 0.4537566 4.299557e-05 lypma 2.078119e-03 35 15"
## [211] "4 0.2226253 8.940946e-05 qiaamp 3.241093e-03 35 6"
## [212] "5 0.2977141 6.927890e-04 qiaamp 2.009088e-02 35 7"
## [213] "6 0.3598657 1.071875e-03 host_zero 2.590364e-02 35 7"
## [214] "7 0.2862978 1.500833e-03 qiaamp 2.886830e-02 35 9"
## [215] "8 0.2062178 1.592734e-03 qiaamp 2.886830e-02 35 4"
## [216] "9 0.3215209 2.243181e-03 lypma 3.044456e-02 35 34"
## [217] "10 0.1080915 2.309588e-03 qiaamp 3.044456e-02 35 35"
## [218] "11 0.2062178 2.167919e-03 host_zero 3.044456e-02 35 4"
## [219] "12 0.4537679 2.670357e-03 host_zero 3.226682e-02 35 15"
## [220] "13 0.1450135 3.626656e-03 benzonase 4.045116e-02 35 35"
## [221] "14 0.2329521 4.131980e-03 qiaamp 4.279551e-02 35 4"
## [222] "15 0.3506935 5.987729e-03 host_zero 5.107181e-02 35 7"
## [223] "16 0.5279897 5.308181e-03 benzonase 5.107181e-02 35 18"
## [224] "17 0.5246176 5.889910e-03 molysis 5.107181e-02 35 18"
## [225] "18 0.2799344 7.863769e-03 host_zero 6.334702e-02 35 3"
## [226] "19 0.3547892 8.948171e-03 qiaamp 6.487424e-02 35 18"
## [227] "20 0.3598657 8.757484e-03 qiaamp 6.487424e-02 35 7"
## [228] "21 0.3546654 1.201761e-02 molysis 8.297876e-02 35 4"
## [229] "22 0.2329521 1.460363e-02 host_zero 9.625120e-02 35 4"
## [230] "23 0.2045140 2.140162e-02 lypma 1.349232e-01 35 4"
## [231] "24 0.1442804 2.287982e-02 molysis 1.382323e-01 35 35"
## [232] "25 0.5246176 2.393399e-02 lypma 1.388171e-01 35 18"
## [233] "26 0.2181985 2.601895e-02 lypma 1.451057e-01 35 0"
## [234] "27 0.3547892 3.085219e-02 host_zero 1.656877e-01 35 18"
## [235] "28 0.5223751 3.822219e-02 lypma 1.787812e-01 35 13"
## [236] "29 0.5940512 3.668875e-02 lypma 1.787812e-01 35 23"
## [237] "30 0.3378942 3.637719e-02 qiaamp 1.787812e-01 35 3"
## [238] "31 0.2311932 3.778927e-02 lypma 1.787812e-01 35 4"
## [239] "32 0.4537566 4.748750e-02 molysis 2.151777e-01 35 15"
## [240] "33 0.3554616 5.912279e-02 qiaamp 2.597820e-01 35 4"
## [241] "34 0.1450135 7.285414e-02 qiaamp 3.107015e-01 35 35"
## [242] "35 0.3072028 7.875516e-02 qiaamp 3.231447e-01 35 22"
## [243] "36 0.2799341 8.022902e-02 lypma 3.231447e-01 35 3"
## [244] "37 0.3760440 8.254599e-02 qiaamp 3.234911e-01 35 4"
## [245] "38 0.5260489 9.421818e-02 qiaamp 3.595168e-01 35 13"
## [246] "39 0.2799341 9.950005e-02 molysis 3.699361e-01 35 3"
## [247] "40 0.3397943 1.025412e-01 lypma 3.717117e-01 35 26"
## [248] "41 0.3202497 1.207793e-01 lypma 3.878968e-01 35 2"
## [249] "42 0.2181985 1.189608e-01 qiaamp 3.878968e-01 35 0"
## [250] "43 0.3374281 1.230569e-01 lypma 3.878968e-01 35 3"
## [251] "44 0.2045140 1.178588e-01 molysis 3.878968e-01 35 4"
## [252] "45 0.2626012 1.219763e-01 qiaamp 3.878968e-01 35 31"
## [253] "46 0.2799344 1.169623e-01 qiaamp 3.878968e-01 35 3"
## [254] "47 0.3743888 1.299744e-01 lypma 3.992267e-01 35 4"
## [255] "48 0.1080915 1.321578e-01 benzonase 3.992267e-01 35 35"
## [256] "49 0.4740412 1.373035e-01 host_zero 4.063063e-01 35 8"
## [257] "50 0.3546654 1.425364e-01 lypma 4.133555e-01 35 4"
## [258] "51 0.3412186 1.687880e-01 benzonase 4.706588e-01 35 26"
## [259] "52 0.3412186 1.674181e-01 host_zero 4.706588e-01 35 26"
## [260] "53 0.5967729 1.744673e-01 benzonase 4.773162e-01 35 23"
## [261] "54 0.4239033 1.823138e-01 qiaamp 4.818250e-01 35 17"
## [262] "55 0.3483722 1.827612e-01 lypma 4.818250e-01 35 7"
## [263] "56 0.4223886 1.869947e-01 lypma 4.841828e-01 35 17"
## [264] "57 0.2862978 1.934540e-01 benzonase 4.921198e-01 35 9"
## [265] "58 0.4712505 2.042863e-01 lypma 5.107158e-01 35 8"
## [266] "59 0.3412186 2.083832e-01 qiaamp 5.121282e-01 35 26"
## [267] "60 0.1072596 2.227707e-01 molysis 5.383625e-01 35 35"
## [268] "61 0.3743888 2.391671e-01 molysis 5.615043e-01 35 4"
## [269] "62 0.3540714 2.422058e-01 lypma 5.615043e-01 35 18"
## [270] "63 0.4537679 2.439639e-01 qiaamp 5.615043e-01 35 15"
## [271] "64 0.3547892 2.552825e-01 benzonase 5.694764e-01 35 18"
## [272] "65 0.3483722 2.525716e-01 molysis 5.694764e-01 35 7"
## [273] "66 0.3968241 2.622746e-01 qiaamp 5.695770e-01 35 6"
## [274] "67 0.4537679 2.631839e-01 benzonase 5.695770e-01 35 15"
## [275] "68 0.2977141 2.714297e-01 lypma 5.787840e-01 35 7"
## [276] "69 0.3202497 3.073264e-01 benzonase 6.104429e-01 35 2"
## [277] "70 0.3202497 2.964426e-01 host_zero 6.104429e-01 35 2"
## [278] "71 0.3968241 3.014486e-01 host_zero 6.104429e-01 35 6"
## [279] "72 0.2311932 3.037308e-01 molysis 6.104429e-01 35 4"
## [280] "73 0.4712505 3.018799e-01 molysis 6.104429e-01 35 8"
## [281] "74 0.3374281 3.167642e-01 molysis 6.206867e-01 35 3"
## [282] "75 0.1080915 3.257566e-01 host_zero 6.297960e-01 35 35"
## [283] "76 0.2854727 3.871409e-01 lypma 6.532631e-01 35 9"
## [284] "77 0.2862978 3.827104e-01 host_zero 6.532631e-01 35 9"
## [285] "78 0.5260489 3.872933e-01 benzonase 6.532631e-01 35 13"
## [286] "79 0.5939051 3.874526e-01 molysis 6.532631e-01 35 15"
## [287] "80 0.3760440 3.546446e-01 benzonase 6.532631e-01 35 4"
## [288] "81 0.4239033 3.712583e-01 host_zero 6.532631e-01 35 17"
## [289] "82 0.3956610 3.555102e-01 lypma 6.532631e-01 35 6"
## [290] "83 0.3968241 3.866032e-01 benzonase 6.532631e-01 35 6"
## [291] "84 0.3046338 3.759746e-01 molysis 6.532631e-01 35 22"
## [292] "85 0.3554616 3.526905e-01 host_zero 6.532631e-01 35 4"
## [293] "86 0.3598657 3.718873e-01 benzonase 6.532631e-01 35 7"
## [294] "87 0.3874866 4.128051e-01 benzonase 6.880085e-01 35 7"
## [295] "88 0.5967729 4.246574e-01 host_zero 6.997196e-01 35 23"
## [296] "89 0.2181985 4.420345e-01 host_zero 7.121667e-01 35 0"
## [297] "90 0.2181985 4.414417e-01 molysis 7.121667e-01 35 0"
## [298] "91 0.3202497 4.729538e-01 molysis 7.432628e-01 35 2"
## [299] "92 0.2612458 4.767134e-01 molysis 7.432628e-01 35 31"
## [300] "93 0.4740412 4.746419e-01 benzonase 7.432628e-01 35 8"
## [301] "94 0.3596640 4.838101e-01 lypma 7.463029e-01 35 7"
## [302] "95 0.5961589 4.951949e-01 qiaamp 7.558237e-01 35 15"
## [303] "96 0.3506935 5.013384e-01 benzonase 7.572299e-01 35 7"
## [304] "97 0.3397943 5.193476e-01 molysis 7.763443e-01 35 26"
## [305] "98 0.3228356 5.296046e-01 benzonase 7.826299e-01 35 34"
## [306] "99 0.2219073 5.343473e-01 lypma 7.826299e-01 35 6"
## [307] "100 0.5967729 5.594758e-01 qiaamp 7.860170e-01 35 23"
## [308] "101 0.2226253 5.523200e-01 benzonase 7.860170e-01 35 6"
## [309] "102 0.2219073 5.610375e-01 molysis 7.860170e-01 35 6"
## [310] "103 0.2977141 5.637639e-01 molysis 7.860170e-01 35 7"
## [311] "104 0.5279897 5.445093e-01 host_zero 7.860170e-01 35 18"
## [312] "105 0.2626012 5.709062e-01 benzonase 7.883943e-01 35 31"
## [313] "106 0.3874696 6.100524e-01 lypma 8.156570e-01 35 7"
## [314] "107 0.3874866 6.084258e-01 host_zero 8.156570e-01 35 7"
## [315] "108 0.3072028 6.005994e-01 benzonase 8.156570e-01 35 22"
## [316] "109 0.1450135 6.131491e-01 host_zero 8.156570e-01 35 35"
## [317] "110 0.2977141 6.213918e-01 benzonase 8.191074e-01 35 7"
## [318] "111 0.3956610 6.324724e-01 molysis 8.258129e-01 35 6"
## [319] "112 0.2626012 6.378693e-01 host_zero 8.258129e-01 35 31"
## [320] "113 0.3540714 6.448022e-01 molysis 8.274010e-01 35 18"
## [321] "114 0.4223886 6.513729e-01 molysis 8.285006e-01 35 17"
## [322] "115 0.5961589 6.579183e-01 host_zero 8.295491e-01 35 15"
## [323] "116 0.2226253 6.695239e-01 host_zero 8.369049e-01 35 6"
## [324] "117 0.3596640 6.837769e-01 molysis 8.474158e-01 35 7"
## [325] "118 0.3228356 7.120929e-01 host_zero 8.750294e-01 35 34"
## [326] "119 0.5939051 7.357930e-01 lypma 8.922051e-01 35 15"
## [327] "120 0.3760440 7.425590e-01 host_zero 8.922051e-01 35 4"
## [328] "121 0.5940512 7.445298e-01 molysis 8.922051e-01 35 23"
## [329] "122 0.3046338 7.595479e-01 lypma 9.027413e-01 35 22"
## [330] "123 0.2854727 7.768509e-01 molysis 9.084143e-01 35 9"
## [331] "124 0.3506935 7.726402e-01 qiaamp 9.084143e-01 35 7"
## [332] "125 0.2977141 7.915225e-01 host_zero 9.181661e-01 35 7"
## [333] "126 0.3554616 8.307909e-01 benzonase 9.560689e-01 35 4"
## [334] "127 0.3215209 8.442607e-01 molysis 9.569797e-01 35 34"
## [335] "128 0.3874866 8.447820e-01 qiaamp 9.569797e-01 35 7"
## [336] "129 0.1072596 8.518377e-01 lypma 9.574920e-01 35 35"
## [337] "130 0.5961589 8.590378e-01 benzonase 9.581575e-01 35 15"
## [338] "131 0.3228356 8.800036e-01 qiaamp 9.711288e-01 35 34"
## [339] "132 0.5260489 9.192957e-01 host_zero 9.711288e-01 35 13"
## [340] "133 0.4239033 9.214220e-01 benzonase 9.711288e-01 35 17"
## [341] "134 0.3202497 9.060800e-01 qiaamp 9.711288e-01 35 2"
## [342] "135 0.2181985 9.402641e-01 benzonase 9.711288e-01 35 0"
## [343] "136 0.3874696 9.510365e-01 molysis 9.711288e-01 35 7"
## [344] "137 0.3378942 9.227152e-01 benzonase 9.711288e-01 35 3"
## [345] "138 0.3378942 9.211893e-01 host_zero 9.711288e-01 35 3"
## [346] "139 0.2329521 9.386094e-01 benzonase 9.711288e-01 35 4"
## [347] "140 0.3072028 9.319259e-01 host_zero 9.711288e-01 35 22"
## [348] "141 0.2799344 9.508490e-01 benzonase 9.711288e-01 35 3"
## [349] "142 0.5279897 8.986487e-01 qiaamp 9.711288e-01 35 18"
## [350] "143 0.5223751 9.703255e-01 molysis 9.829664e-01 35 13"
## [351] "144 0.2062178 9.829664e-01 benzonase 9.829664e-01 35 4"
## [352] "145 0.4740412 9.765925e-01 qiaamp 9.829664e-01 35 8"
## [353] ""
## [354] "$residuals"
## [355] " NS_8_c_qiaamp NS_8_b_lyPMA NS_8_a_control"
## [356] "Aeriscardovia_aeriphila -0.837221289 -0.16313205 0.18111308"
## [357] "Corynebacterium_accolens -0.040298704 2.43612133 -1.01688423"
## [358] "Corynebacterium_atypicum -0.004306104 1.72742690 -0.49862701"
## [359] "Corynebacterium_pseudodiphtheriticum 3.593324413 -4.23281242 1.82132872"
## [360] "Corynebacterium_pseudogenitalium 2.334191922 -1.55011236 -1.34305404"
## [361] "Rothia_mucilaginosa -0.501804973 -0.43698824 0.85529312"
## [362] "Cutibacterium_acnes -0.388180001 -0.18287624 0.23213992"
## [363] "Cutibacterium_granulosum 0.030748112 5.73890194 -6.01254278"
## [364] "Propionibacterium_humerusii -0.434022499 0.31947409 -1.24337438"
## [365] "Propionibacterium_namnetense 0.959397038 0.22345876 -1.76003629"
## [366] "Collinsella_aerofaciens 2.725316007 -0.30945369 0.76791542"
## [367] "Collinsella_intestinalis 0.543676189 -0.30945369 0.76791542"
## [368] "X.Collinsella._massiliensis -0.944399194 0.20987686 0.24013608"
## [369] "Slackia_isoflavoniconvertens 2.910738530 -0.37333154 -0.17414357"
## [370] "Thermoleophilum_album -1.815352369 -0.30945369 0.26618744"
## [371] "Gemella_asaccharolytica -2.772820910 1.93516770 0.21790051"
## [372] "Gemella_haemolysans -0.401220854 -0.38271152 0.77137259"
## [373] "Gemella_sanguinis -1.371088264 -0.06175074 0.62464190"
## [374] "Staphylococcus_argenteus -0.450046245 -0.36391404 0.71653810"
## [375] "Staphylococcus_aureus -0.440652296 -0.34756167 0.72425458"
## [376] "Staphylococcus_epidermidis 0.265169986 -1.36442665 0.30388736"
## [377] "Dolosigranulum_pigrum 1.998284200 -3.65898119 1.80973925"
## [378] "Streptococcus_oralis -0.500814615 -0.35622762 0.79479211"
## [379] "Limnochorda_pilosa 1.560392576 -0.32011048 0.75912713"
## [380] "Anaerococcus_nagyae -3.258489304 2.16484772 0.06101103"
## [381] "Finegoldia_magna -0.342409455 -0.30969146 0.04633356"
## [382] "Cupriavidus_sp -0.587705023 0.11142793 -0.18982800"
## [383] "Sutterella_parvirubra -3.856181298 -5.08823041 0.95109324"
## [384] "Malassezia_restricta 0.124607324 3.46704976 -1.89798631"
## [385] " NS_6_c_qiaamp NS_6_b_lyPMA NS_6_a_control"
## [386] "Aeriscardovia_aeriphila 0.05718649 0.8350289 -1.6218839"
## [387] "Corynebacterium_accolens 0.69927008 -5.2109620 1.4867223"
## [388] "Corynebacterium_atypicum -0.58696001 -0.1294574 0.2068443"
## [389] "Corynebacterium_pseudodiphtheriticum -1.64878566 3.6933596 -2.7257169"
## [390] "Corynebacterium_pseudogenitalium -1.91326947 1.0359623 -1.5581373"
## [391] "Rothia_mucilaginosa -0.31763628 0.7877029 -0.7211737"
## [392] "Cutibacterium_acnes -0.26157876 0.2998214 0.2523631"
## [393] "Cutibacterium_granulosum 1.95316715 -2.9223395 2.5577226"
## [394] "Propionibacterium_humerusii 0.16762563 -0.1363379 2.4731987"
## [395] "Propionibacterium_namnetense 1.21789224 -0.8373898 1.8384475"
## [396] "Collinsella_aerofaciens -2.39580439 0.7398471 -0.9839418"
## [397] "Collinsella_intestinalis 0.55245451 0.7398471 -0.9839418"
## [398] "X.Collinsella._massiliensis -0.06031818 -0.1515043 1.8650887"
## [399] "Slackia_isoflavoniconvertens 1.38754157 0.7410264 -1.8609435"
## [400] "Thermoleophilum_album 0.71715259 0.7398471 3.5316101"
## [401] "Gemella_asaccharolytica 2.02054992 -2.4418745 1.6569199"
## [402] "Gemella_haemolysans -0.28784709 0.7711847 -0.8758891"
## [403] "Gemella_sanguinis -1.21520374 1.1346562 -0.9801091"
## [404] "Staphylococcus_argenteus -0.22250121 0.9041534 -0.8165524"
## [405] "Staphylococcus_aureus -0.20526398 0.9283491 -0.8009926"
## [406] "Staphylococcus_epidermidis 0.21995737 -1.0155949 0.4904082"
## [407] "Dolosigranulum_pigrum -1.02400782 1.7925563 -1.1068734"
## [408] "Streptococcus_oralis -0.36153215 0.8235773 -0.8265609"
## [409] "Limnochorda_pilosa -3.77051647 0.7554789 -0.9664414"
## [410] "Anaerococcus_nagyae 2.48279802 -2.8259826 2.3578689"
## [411] "Finegoldia_magna -0.26522398 0.8080165 -1.6371165"
## [412] "Cupriavidus_sp -0.41575459 0.6613197 -0.3769904"
## [413] "Sutterella_parvirubra 2.32530203 2.2415368 -1.0642093"
## [414] "Malassezia_restricta 2.03360251 -3.7658320 2.7499873"
## [415] " NS_37_c_molysis NS_37_b_qiaamp"
## [416] "Aeriscardovia_aeriphila 1.94264966 0.10157497"
## [417] "Corynebacterium_accolens 0.10750200 -0.17762090"
## [418] "Corynebacterium_atypicum 1.25412193 -0.52150836"
## [419] "Corynebacterium_pseudodiphtheriticum -2.06873283 0.77122234"
## [420] "Corynebacterium_pseudogenitalium -1.17797774 -1.29996569"
## [421] "Rothia_mucilaginosa -2.63036545 0.75549794"
## [422] "Cutibacterium_acnes -0.40141592 -0.13729514"
## [423] "Cutibacterium_granulosum 1.15601043 0.28520430"
## [424] "Propionibacterium_humerusii 1.08997881 -0.52931210"
## [425] "Propionibacterium_namnetense 1.52093686 0.16142068"
## [426] "Collinsella_aerofaciens 1.13634276 -2.36631238"
## [427] "Collinsella_intestinalis 0.90130667 0.58194652"
## [428] "X.Collinsella._massiliensis 1.28693146 -0.47128382"
## [429] "Slackia_isoflavoniconvertens 2.29240804 1.41372779"
## [430] "Thermoleophilum_album 2.61181218 -0.09998548"
## [431] "Gemella_asaccharolytica 0.96881103 0.28037131"
## [432] "Gemella_haemolysans -2.92807601 0.33916394"
## [433] "Gemella_sanguinis -2.35036081 -0.33764516"
## [434] "Staphylococcus_argenteus -1.05789414 0.55703935"
## [435] "Staphylococcus_aureus -0.84156767 0.52101432"
## [436] "Staphylococcus_epidermidis -0.05991279 -0.10375655"
## [437] "Dolosigranulum_pigrum -0.87036649 0.14333858"
## [438] "Streptococcus_oralis -4.14844033 0.74266164"
## [439] "Limnochorda_pilosa 3.06308354 2.17218284"
## [440] "Anaerococcus_nagyae 1.41761728 0.45044639"
## [441] "Finegoldia_magna -2.56507538 0.09676323"
## [442] "Cupriavidus_sp -0.72896535 0.43376368"
## [443] "Sutterella_parvirubra 0.48681163 -3.90918395"
## [444] "Malassezia_restricta 1.87478450 0.18736587"
## [445] " NS_37_a_control NS_26_d_host_zero"
## [446] "Aeriscardovia_aeriphila -1.84707466 1.58150230"
## [447] "Corynebacterium_accolens 0.09684511 -0.14323490"
## [448] "Corynebacterium_atypicum 0.41157636 -0.01205321"
## [449] "Corynebacterium_pseudodiphtheriticum -0.03123690 2.86940823"
## [450] "Corynebacterium_pseudogenitalium -0.67036150 1.31119523"
## [451] "Rothia_mucilaginosa 0.62643257 -2.31475960"
## [452] "Cutibacterium_acnes 0.70463096 0.19658355"
## [453] "Cutibacterium_granulosum 1.44439261 2.56909590"
## [454] "Propionibacterium_humerusii 2.41147851 0.16634965"
## [455] "Propionibacterium_namnetense 0.82630937 1.18034563"
## [456] "Collinsella_aerofaciens -0.67997771 0.77909662"
## [457] "Collinsella_intestinalis -0.67997771 1.23015200"
## [458] "X.Collinsella._massiliensis 1.00758706 0.75515791"
## [459] "Slackia_isoflavoniconvertens -1.61363123 3.75238836"
## [460] "Thermoleophilum_album -1.18170569 1.60999556"
## [461] "Gemella_asaccharolytica 0.35495722 -1.41708504"
## [462] "Gemella_haemolysans 0.02559393 -3.13132487"
## [463] "Gemella_sanguinis 0.17192155 -2.36978483"
## [464] "Staphylococcus_argenteus 0.23746024 -1.41485098"
## [465] "Staphylococcus_aureus 0.19975774 -1.19666907"
## [466] "Staphylococcus_epidermidis 0.10928680 0.41589951"
## [467] "Dolosigranulum_pigrum 0.33494501 0.48909716"
## [468] "Streptococcus_oralis 0.55210490 -2.19105116"
## [469] "Limnochorda_pilosa -0.69991260 -1.12603245"
## [470] "Anaerococcus_nagyae 0.56834807 -2.40833629"
## [471] "Finegoldia_magna -1.00065722 -0.75889899"
## [472] "Cupriavidus_sp -0.48338083 -0.13100572"
## [473] "Sutterella_parvirubra -0.58807288 -0.43060468"
## [474] "Malassezia_restricta 0.11060811 0.96658049"
## [475] " NS_26_c_benzonase NS_26_b_lyPMA"
## [476] "Aeriscardovia_aeriphila -1.08433042 0.05336067"
## [477] "Corynebacterium_accolens -0.75889360 1.29968236"
## [478] "Corynebacterium_atypicum 0.18668140 -1.91112539"
## [479] "Corynebacterium_pseudodiphtheriticum 1.61966976 -4.17954106"
## [480] "Corynebacterium_pseudogenitalium -0.39966783 -0.50605104"
## [481] "Rothia_mucilaginosa 0.51358264 0.62419936"
## [482] "Cutibacterium_acnes -0.08113496 -0.10548340"
## [483] "Cutibacterium_granulosum -3.69235215 -1.56364704"
## [484] "Propionibacterium_humerusii -0.05831775 0.74023874"
## [485] "Propionibacterium_namnetense -2.44811434 0.05677165"
## [486] "Collinsella_aerofaciens -0.18288052 0.07938310"
## [487] "Collinsella_intestinalis 0.70798894 0.07938310"
## [488] "X.Collinsella._massiliensis 0.24764557 0.24118699"
## [489] "Slackia_isoflavoniconvertens -1.19240661 -0.08033438"
## [490] "Thermoleophilum_album -0.16590063 0.07938310"
## [491] "Gemella_asaccharolytica 0.41708062 1.86071980"
## [492] "Gemella_haemolysans 1.23815977 0.39309497"
## [493] "Gemella_sanguinis 1.61630154 0.34598672"
## [494] "Staphylococcus_argenteus 0.96747614 0.34047889"
## [495] "Staphylococcus_aureus 0.95868403 0.27662017"
## [496] "Staphylococcus_epidermidis 0.22690478 -1.32527057"
## [497] "Dolosigranulum_pigrum 0.60657675 -0.20703432"
## [498] "Streptococcus_oralis 1.25729572 0.29228202"
## [499] "Limnochorda_pilosa 0.70813321 0.08034303"
## [500] "Anaerococcus_nagyae 0.68228272 2.21645602"
## [501] "Finegoldia_magna 0.96981635 0.09385960"
## [502] "Cupriavidus_sp -0.35346582 -0.25069654"
## [503] "Sutterella_parvirubra -0.71797200 1.78342137"
## [504] "Malassezia_restricta -0.96168704 -1.22163335"
## [505] " NS_26_a_control NS_23_d_molysis"
## [506] "Aeriscardovia_aeriphila -1.06791092 -0.62746024"
## [507] "Corynebacterium_accolens 1.00779572 -0.06270265"
## [508] "Corynebacterium_atypicum 2.39945214 -2.36986221"
## [509] "Corynebacterium_pseudodiphtheriticum 0.96321038 -0.01379039"
## [510] "Corynebacterium_pseudogenitalium -1.76450944 3.52728107"
## [511] "Rothia_mucilaginosa 0.45096401 2.08537547"
## [512] "Cutibacterium_acnes -0.09544259 0.03623057"
## [513] "Cutibacterium_granulosum 2.46489633 -1.65141911"
## [514] "Propionibacterium_humerusii -2.28812645 1.92208759"
## [515] "Propionibacterium_namnetense 1.36993382 -1.24655491"
## [516] "Collinsella_aerofaciens -0.30876450 -0.66634026"
## [517] "Collinsella_intestinalis -0.30876450 -0.49008032"
## [518] "X.Collinsella._massiliensis -1.19407049 -1.37178600"
## [519] "Slackia_isoflavoniconvertens 2.97082498 -0.84338474"
## [520] "Thermoleophilum_album -0.81049249 -1.00182476"
## [521] "Gemella_asaccharolytica -1.32206410 -0.19164701"
## [522] "Gemella_haemolysans 0.08166237 2.40106678"
## [523] "Gemella_sanguinis -0.43313734 -1.98291630"
## [524] "Staphylococcus_argenteus -0.04458567 0.04595737"
## [525] "Staphylococcus_aureus -0.11708029 0.14289784"
## [526] "Staphylococcus_epidermidis 0.13177945 -0.37108451"
## [527] "Dolosigranulum_pigrum -0.68724063 -0.88264475"
## [528] "Streptococcus_oralis -0.02221496 1.65943325"
## [529] "Limnochorda_pilosa -0.30593607 -1.36898796"
## [530] "Anaerococcus_nagyae -1.35289739 0.06959770"
## [531] "Finegoldia_magna -1.01563209 -0.42309399"
## [532] "Cupriavidus_sp 0.78077527 0.50507880"
## [533] "Sutterella_parvirubra -0.31606967 3.54854835"
## [534] "Malassezia_restricta 0.98339037 0.23237077"
## [535] " NS_23_c_benzonase NS_23_b_host_zero"
## [536] "Aeriscardovia_aeriphila -1.17356199 0.86866123"
## [537] "Corynebacterium_accolens 0.27607044 0.39635753"
## [538] "Corynebacterium_atypicum 1.54413313 0.88752513"
## [539] "Corynebacterium_pseudodiphtheriticum -0.50223569 -2.12061550"
## [540] "Corynebacterium_pseudogenitalium 3.27282238 0.77450896"
## [541] "Rothia_mucilaginosa -1.64711398 0.88246594"
## [542] "Cutibacterium_acnes 0.16413976 0.21084405"
## [543] "Cutibacterium_granulosum 0.91757888 -2.84701821"
## [544] "Propionibacterium_humerusii -0.76871157 0.49925320"
## [545] "Propionibacterium_namnetense -1.14635864 1.18930937"
## [546] "Collinsella_aerofaciens -0.18365093 -2.97978132"
## [547] "Collinsella_intestinalis 0.70721853 -2.49973841"
## [548] "X.Collinsella._massiliensis 0.13988175 1.01948210"
## [549] "Slackia_isoflavoniconvertens -0.92055161 -2.21972275"
## [550] "Thermoleophilum_album -0.16667104 -2.74614779"
## [551] "Gemella_asaccharolytica 0.09342172 -0.33406550"
## [552] "Gemella_haemolysans -0.52357754 3.05464626"
## [553] "Gemella_sanguinis 0.30758347 3.09415155"
## [554] "Staphylococcus_argenteus 0.07215209 -0.90349659"
## [555] "Staphylococcus_aureus -0.02123392 -0.76990858"
## [556] "Staphylococcus_epidermidis -0.17362497 0.76479469"
## [557] "Dolosigranulum_pigrum -0.77543293 1.59882961"
## [558] "Streptococcus_oralis -1.10787704 4.92136061"
## [559] "Limnochorda_pilosa 0.70006544 0.27257822"
## [560] "Anaerococcus_nagyae 0.40056747 -1.28337310"
## [561] "Finegoldia_magna 0.84555114 -0.83849377"
## [562] "Cupriavidus_sp 0.09593175 -0.06994757"
## [563] "Sutterella_parvirubra -0.79109500 -0.61930584"
## [564] "Malassezia_restricta 1.08862478 0.52089234"
## [565] " NS_23_a_control NS_22_d_molysis"
## [566] "Aeriscardovia_aeriphila 0.56992300 -1.64087388"
## [567] "Corynebacterium_accolens -0.58463231 0.60282175"
## [568] "Corynebacterium_atypicum -1.56829434 1.72550027"
## [569] "Corynebacterium_pseudodiphtheriticum 1.46954954 1.57862167"
## [570] "Corynebacterium_pseudogenitalium -4.04328009 -0.82949795"
## [571] "Rothia_mucilaginosa 0.01733288 0.17914337"
## [572] "Cutibacterium_acnes -0.31715872 1.08205999"
## [573] "Cutibacterium_granulosum -0.77551824 0.24358845"
## [574] "Propionibacterium_humerusii -1.27145478 -1.19968015"
## [575] "Propionibacterium_namnetense -0.36341891 -2.65558075"
## [576] "Collinsella_aerofaciens 1.41753058 -0.27565143"
## [577] "Collinsella_intestinalis 1.41753058 -0.09939150"
## [578] "X.Collinsella._massiliensis 0.42523118 -0.33197276"
## [579] "Slackia_isoflavoniconvertens 0.65225736 -0.59669045"
## [580] "Thermoleophilum_album 0.91580259 -0.61113593"
## [581] "Gemella_asaccharolytica 0.08134248 1.01368478"
## [582] "Gemella_haemolysans 0.04699055 -0.01871972"
## [583] "Gemella_sanguinis -0.01478992 -0.03470138"
## [584] "Staphylococcus_argenteus 0.78715577 1.28460678"
## [585] "Staphylococcus_aureus 0.63006726 1.40446339"
## [586] "Staphylococcus_epidermidis 0.27814452 0.40535598"
## [587] "Dolosigranulum_pigrum 0.35967010 0.95558898"
## [588] "Streptococcus_oralis -0.66032223 -1.55443851"
## [589] "Limnochorda_pilosa 1.41306165 -0.96302059"
## [590] "Anaerococcus_nagyae 0.09245286 1.24552386"
## [591] "Finegoldia_magna 0.58716819 0.25629698"
## [592] "Cupriavidus_sp 0.02240487 1.01331666"
## [593] "Sutterella_parvirubra 1.33787282 -2.33544130"
## [594] "Malassezia_restricta -2.87598444 -0.48477871"
## [595] " NS_22_c_benzonase NS_22_b_host_zero"
## [596] "Aeriscardovia_aeriphila 2.3241360 -0.73609793"
## [597] "Corynebacterium_accolens 1.1455220 -1.07724210"
## [598] "Corynebacterium_atypicum 0.8321120 -2.05095132"
## [599] "Corynebacterium_pseudodiphtheriticum -0.8987985 0.32766133"
## [600] "Corynebacterium_pseudogenitalium -3.2710618 1.83761084"
## [601] "Rothia_mucilaginosa -0.8154616 -0.79567077"
## [602] "Cutibacterium_acnes -0.3249432 -0.18522909"
## [603] "Cutibacterium_granulosum 1.5101329 -0.24949851"
## [604] "Propionibacterium_humerusii -0.8356831 0.15577214"
## [605] "Propionibacterium_namnetense 0.8756472 0.49671407"
## [606] "Collinsella_aerofaciens -1.8257623 3.47500234"
## [607] "Collinsella_intestinalis -0.9348928 2.01810378"
## [608] "X.Collinsella._massiliensis -0.8531052 1.42032177"
## [609] "Slackia_isoflavoniconvertens 1.6753691 -2.56437397"
## [610] "Thermoleophilum_album 2.5606655 1.40990435"
## [611] "Gemella_asaccharolytica -0.7340467 0.27992077"
## [612] "Gemella_haemolysans -0.2225740 -1.74392557"
## [613] "Gemella_sanguinis 0.2229982 -0.91495506"
## [614] "Staphylococcus_argenteus -0.7219987 -0.25619270"
## [615] "Staphylococcus_aureus -0.7924685 -0.09968853"
## [616] "Staphylococcus_epidermidis -0.4432256 -0.26709194"
## [617] "Dolosigranulum_pigrum -0.2982800 -0.31677536"
## [618] "Streptococcus_oralis 0.1115957 -0.48861803"
## [619] "Limnochorda_pilosa -0.9267674 0.08720008"
## [620] "Anaerococcus_nagyae -0.4563066 -0.69879246"
## [621] "Finegoldia_magna -0.5078581 -0.43002636"
## [622] "Cupriavidus_sp 0.0147841 -0.17634479"
## [623] "Sutterella_parvirubra 4.7242944 0.18024435"
## [624] "Malassezia_restricta -1.6613249 0.83571696"
## [625] " NS_22_a_control NS_21_d_molysis"
## [626] "Aeriscardovia_aeriphila 2.14969346 0.30288712"
## [627] "Corynebacterium_accolens 0.22357838 0.35873825"
## [628] "Corynebacterium_atypicum 0.99155087 -0.92896989"
## [629] "Corynebacterium_pseudodiphtheriticum 0.46813580 0.21750832"
## [630] "Corynebacterium_pseudogenitalium 2.40398441 2.08628436"
## [631] "Rothia_mucilaginosa 0.40606531 3.12871611"
## [632] "Cutibacterium_acnes -0.69882849 -0.51441678"
## [633] "Cutibacterium_granulosum -0.49784518 -0.10177378"
## [634] "Propionibacterium_humerusii -1.78134627 -2.85048012"
## [635] "Propionibacterium_namnetense 2.10097415 0.06849998"
## [636] "Collinsella_aerofaciens -0.66750069 -0.72800621"
## [637] "Collinsella_intestinalis -0.66750069 -0.55174628"
## [638] "X.Collinsella._massiliensis -1.01067568 -0.52580217"
## [639] "Slackia_isoflavoniconvertens 2.79267941 -0.87049816"
## [640] "Thermoleophilum_album -1.16922868 -1.06349071"
## [641] "Gemella_asaccharolytica -1.18904582 0.03486045"
## [642] "Gemella_haemolysans -0.09492586 -1.57437436"
## [643] "Gemella_sanguinis -0.54229510 1.75279010"
## [644] "Staphylococcus_argenteus -0.44991493 1.24822732"
## [645] "Staphylococcus_aureus -0.58408728 0.67193737"
## [646] "Staphylococcus_epidermidis 0.02537154 -0.75649536"
## [647] "Dolosigranulum_pigrum -0.15867642 0.83449815"
## [648] "Streptococcus_oralis 0.11623063 2.25812608"
## [649] "Limnochorda_pilosa -0.65669107 -1.42524925"
## [650] "Anaerococcus_nagyae -1.20734109 -1.10895793"
## [651] "Finegoldia_magna -1.20916094 -1.38714787"
## [652] "Cupriavidus_sp -0.29660296 0.08705640"
## [653] "Sutterella_parvirubra -0.71010211 -2.68418253"
## [654] "Malassezia_restricta 0.70879258 1.80383955"
## [655] " NS_21_c_benzonase NS_21_b_host_zero"
## [656] "Aeriscardovia_aeriphila -0.231363883 -2.29362362"
## [657] "Corynebacterium_accolens 0.002210393 0.06890069"
## [658] "Corynebacterium_atypicum -2.144787356 1.50144842"
## [659] "Corynebacterium_pseudodiphtheriticum -0.259086223 -1.52760170"
## [660] "Corynebacterium_pseudogenitalium -3.416573995 0.73577236"
## [661] "Rothia_mucilaginosa 2.241262368 2.18910208"
## [662] "Cutibacterium_acnes 0.156900280 0.13753837"
## [663] "Cutibacterium_granulosum 0.021281546 1.03515858"
## [664] "Propionibacterium_humerusii -0.441832191 -0.18437807"
## [665] "Propionibacterium_namnetense 0.180547004 -3.21385384"
## [666] "Collinsella_aerofaciens -0.233466132 -2.67973219"
## [667] "Collinsella_intestinalis 0.657403327 -2.19968927"
## [668] "X.Collinsella._massiliensis 0.997716330 -1.53401910"
## [669] "Slackia_isoflavoniconvertens -0.935814278 -1.88512108"
## [670] "Thermoleophilum_album -0.216486244 -2.44609866"
## [671] "Gemella_asaccharolytica 0.331779929 0.25415704"
## [672] "Gemella_haemolysans 0.266422253 3.78904528"
## [673] "Gemella_sanguinis -1.590306283 1.57377767"
## [674] "Staphylococcus_argenteus -0.255331849 1.85969109"
## [675] "Staphylococcus_aureus -0.035523800 1.17160306"
## [676] "Staphylococcus_epidermidis -0.450791506 0.57182797"
## [677] "Dolosigranulum_pigrum 0.373419298 -1.66570936"
## [678] "Streptococcus_oralis 0.471643036 -1.22016107"
## [679] "Limnochorda_pilosa 0.655654905 0.57803202"
## [680] "Anaerococcus_nagyae -0.766137412 4.18205310"
## [681] "Finegoldia_magna -0.106651997 1.80069498"
## [682] "Cupriavidus_sp 0.652287082 0.07879100"
## [683] "Sutterella_parvirubra -0.700240325 0.68329049"
## [684] "Malassezia_restricta 2.671944308 -3.46481765"
## [685] " NS_21_a_control NS_19_d_molysis"
## [686] "Aeriscardovia_aeriphila 0.122143871 0.02279734"
## [687] "Corynebacterium_accolens -1.775522736 -1.00635936"
## [688] "Corynebacterium_atypicum -1.505528508 0.31920989"
## [689] "Corynebacterium_pseudodiphtheriticum 0.322721762 0.28639323"
## [690] "Corynebacterium_pseudogenitalium 2.857494993 -3.60608973"
## [691] "Rothia_mucilaginosa -3.876185127 -2.76286950"
## [692] "Cutibacterium_acnes 0.118972933 -0.20245785"
## [693] "Cutibacterium_granulosum 0.009985589 0.35359401"
## [694] "Propionibacterium_humerusii 2.891194034 1.03809387"
## [695] "Propionibacterium_namnetense -0.426490508 2.31269881"
## [696] "Collinsella_aerofaciens -0.022261864 0.53365513"
## [697] "Collinsella_intestinalis -0.022261864 0.23991143"
## [698] "X.Collinsella._massiliensis -0.106911482 0.94262947"
## [699] "Slackia_isoflavoniconvertens -0.752982546 0.01816530"
## [700] "Thermoleophilum_album -0.523989848 0.06463923"
## [701] "Gemella_asaccharolytica -1.070276544 -1.82570925"
## [702] "Gemella_haemolysans -0.552986897 2.12010331"
## [703] "Gemella_sanguinis 2.839380489 2.61518840"
## [704] "Staphylococcus_argenteus -1.622437877 -1.52089733"
## [705] "Staphylococcus_aureus -1.139432471 -1.37773093"
## [706] "Staphylococcus_epidermidis 0.688089235 0.78213669"
## [707] "Dolosigranulum_pigrum 0.107527163 -0.03707589"
## [708] "Streptococcus_oralis -0.470779395 1.78531951"
## [709] "Limnochorda_pilosa -0.021326125 0.69417426"
## [710] "Anaerococcus_nagyae -2.464229266 -1.62378092"
## [711] "Finegoldia_magna 6.308995164 4.11902026"
## [712] "Cupriavidus_sp -0.050342753 -0.87648652"
## [713] "Sutterella_parvirubra 0.038750260 0.98426385"
## [714] "Malassezia_restricta -2.682642149 -3.42621612"
## [715] " NS_19_c_benzonase NS_19_b_host_zero"
## [716] "Aeriscardovia_aeriphila 0.16512026 0.57955803"
## [717] "Corynebacterium_accolens -0.66490921 0.75521877"
## [718] "Corynebacterium_atypicum -0.41813921 -0.32596902"
## [719] "Corynebacterium_pseudodiphtheriticum 0.04045065 0.45114764"
## [720] "Corynebacterium_pseudogenitalium 3.81448122 -4.65908738"
## [721] "Rothia_mucilaginosa -0.29226939 0.03886235"
## [722] "Cutibacterium_acnes 0.08503808 -0.35973688"
## [723] "Cutibacterium_granulosum 1.24335880 -0.50773776"
## [724] "Propionibacterium_humerusii 2.10454465 -0.63699691"
## [725] "Propionibacterium_namnetense 2.53827883 0.34748478"
## [726] "Collinsella_aerofaciens 2.42575986 1.40541454"
## [727] "Collinsella_intestinalis -1.13771797 1.45117191"
## [728] "X.Collinsella._massiliensis -0.53213846 -1.66094268"
## [729] "Slackia_isoflavoniconvertens 1.37340336 2.91682943"
## [730] "Thermoleophilum_album -2.01160754 2.17234655"
## [731] "Gemella_asaccharolytica -0.10823560 1.21707273"
## [732] "Gemella_haemolysans -0.75843045 -1.96844110"
## [733] "Gemella_sanguinis -0.55657694 -1.38318932"
## [734] "Staphylococcus_argenteus -0.06229769 0.71484918"
## [735] "Staphylococcus_aureus -0.10945776 0.89466313"
## [736] "Staphylococcus_epidermidis 0.84073725 -1.48543023"
## [737] "Dolosigranulum_pigrum 0.09371684 -0.10544206"
## [738] "Streptococcus_oralis -0.73265746 -1.02153035"
## [739] "Limnochorda_pilosa -1.13708620 0.18822213"
## [740] "Anaerococcus_nagyae 0.13959378 0.20844876"
## [741] "Finegoldia_magna -1.20085741 0.22672413"
## [742] "Cupriavidus_sp -0.40953712 0.29850708"
## [743] "Sutterella_parvirubra -2.51498702 0.18637567"
## [744] "Malassezia_restricta -1.13755718 1.14162787"
## [745] " NS_19_a_control NS_18_c_qiaamp"
## [746] "Aeriscardovia_aeriphila 2.21569547 -0.23010262"
## [747] "Corynebacterium_accolens 1.11909158 -0.54687035"
## [748] "Corynebacterium_atypicum 1.60767753 -0.16356413"
## [749] "Corynebacterium_pseudodiphtheriticum 0.89378322 -1.93450155"
## [750] "Corynebacterium_pseudogenitalium 3.50324496 -2.18184845"
## [751] "Rothia_mucilaginosa 1.29655433 -0.59017380"
## [752] "Cutibacterium_acnes 0.33543782 -0.11513591"
## [753] "Cutibacterium_granulosum 0.01110002 2.25202258"
## [754] "Propionibacterium_humerusii -2.89266231 -0.08674273"
## [755] "Propionibacterium_namnetense -4.21143667 1.39318545"
## [756] "Collinsella_aerofaciens -0.50302906 2.96295592"
## [757] "Collinsella_intestinalis -0.50302906 0.34287031"
## [758] "X.Collinsella._massiliensis -0.32241217 0.81300110"
## [759] "Slackia_isoflavoniconvertens -1.46014415 -3.67119068"
## [760] "Thermoleophilum_album -1.00475704 0.93353009"
## [761] "Gemella_asaccharolytica -0.19593797 2.14802322"
## [762] "Gemella_haemolysans -0.26348550 -0.53497400"
## [763] "Gemella_sanguinis -0.95457347 -1.47758915"
## [764] "Staphylococcus_argenteus 0.57708285 -0.51060792"
## [765] "Staphylococcus_aureus 0.46622028 -0.49618590"
## [766] "Staphylococcus_epidermidis -0.04764767 -0.91149841"
## [767] "Dolosigranulum_pigrum 0.28322299 -1.31531160"
## [768] "Streptococcus_oralis -0.36072578 -0.61795854"
## [769] "Limnochorda_pilosa -0.49971313 2.34735239"
## [770] "Anaerococcus_nagyae -0.24414397 2.46932597"
## [771] "Finegoldia_magna -1.53486349 -0.49936173"
## [772] "Cupriavidus_sp 1.01681468 -0.49188806"
## [773] "Sutterella_parvirubra -0.46164234 1.74076757"
## [774] "Malassezia_restricta 2.53688794 0.88072890"
## [775] " NS_18_b_lyPMA NS_18_a_control"
## [776] "Aeriscardovia_aeriphila 0.3928204 -0.81240277"
## [777] "Corynebacterium_accolens -0.4061048 0.19768944"
## [778] "Corynebacterium_atypicum -0.8505622 0.84397233"
## [779] "Corynebacterium_pseudodiphtheriticum 3.2206850 -1.94670194"
## [780] "Corynebacterium_pseudogenitalium 0.5804246 -0.76198540"
## [781] "Rothia_mucilaginosa 0.3282067 0.07101969"
## [782] "Cutibacterium_acnes 0.5030635 -0.20196610"
## [783] "Cutibacterium_granulosum -3.0686819 2.18085739"
## [784] "Propionibacterium_humerusii -0.4553084 2.84747173"
## [785] "Propionibacterium_namnetense -0.5945169 0.57300011"
## [786] "Collinsella_aerofaciens 0.3433042 -0.12879506"
## [787] "Collinsella_intestinalis 0.3433042 -0.12879506"
## [788] "X.Collinsella._massiliensis 0.4329736 -1.08623556"
## [789] "Slackia_isoflavoniconvertens 0.4789421 -0.87133825"
## [790] "Thermoleophilum_album 0.3433042 -0.63052304"
## [791] "Gemella_asaccharolytica -2.3638235 1.28912480"
## [792] "Gemella_haemolysans 0.3370991 -0.05828516"
## [793] "Gemella_sanguinis 0.6853121 -0.17776359"
## [794] "Staphylococcus_argenteus 0.4290880 -0.03992818"
## [795] "Staphylococcus_aureus 0.4504685 -0.02718363"
## [796] "Staphylococcus_epidermidis -0.3640971 0.23701945"
## [797] "Dolosigranulum_pigrum 1.3142938 -0.33344632"
## [798] "Streptococcus_oralis 0.3801922 -0.01825642"
## [799] "Limnochorda_pilosa 0.3302814 -0.13994931"
## [800] "Anaerococcus_nagyae -2.8125226 2.15102988"
## [801] "Finegoldia_magna 0.3869200 -0.80652333"
## [802] "Cupriavidus_sp 0.6567814 -0.69230684"
## [803] "Sutterella_parvirubra 1.6691453 -0.20230185"
## [804] "Malassezia_restricta -0.6690345 1.25917202"
## [805] " NS_17_c_qiaamp NS_17_b_lyPMA"
## [806] "Aeriscardovia_aeriphila 0.90856246 -1.1180780"
## [807] "Corynebacterium_accolens 0.06551987 1.8812631"
## [808] "Corynebacterium_atypicum 1.27633860 1.1637181"
## [809] "Corynebacterium_pseudodiphtheriticum -0.78125954 1.4983088"
## [810] "Corynebacterium_pseudogenitalium 3.06089169 0.4397765"
## [811] "Rothia_mucilaginosa 0.65411712 -1.3031207"
## [812] "Cutibacterium_acnes 0.90218982 -0.5145253"
## [813] "Cutibacterium_granulosum -4.52114214 1.8157665"
## [814] "Propionibacterium_humerusii 0.88245170 -0.4680665"
## [815] "Propionibacterium_namnetense -3.73189541 1.1516762"
## [816] "Collinsella_aerofaciens -0.92615516 -0.8530807"
## [817] "Collinsella_intestinalis -2.02094753 -0.8530807"
## [818] "X.Collinsella._massiliensis 0.66300010 -0.7325331"
## [819] "Slackia_isoflavoniconvertens -2.04081721 -0.7663027"
## [820] "Thermoleophilum_album 0.26465516 -0.8530807"
## [821] "Gemella_asaccharolytica -1.67612355 1.0098105"
## [822] "Gemella_haemolysans 0.88487799 -1.1186672"
## [823] "Gemella_sanguinis 4.40152631 -2.1042043"
## [824] "Staphylococcus_argenteus 0.62611602 -1.3098063"
## [825] "Staphylococcus_aureus 0.62108786 -1.3078760"
## [826] "Staphylococcus_epidermidis 0.53012761 4.0693892"
## [827] "Dolosigranulum_pigrum 0.19769664 0.7591654"
## [828] "Streptococcus_oralis 0.73764367 -1.1398239"
## [829] "Limnochorda_pilosa -2.30941134 -0.8459929"
## [830] "Anaerococcus_nagyae -2.14408107 1.2572014"
## [831] "Finegoldia_magna 1.01023194 -0.9791046"
## [832] "Cupriavidus_sp 1.06158401 -1.1788325"
## [833] "Sutterella_parvirubra 3.69929565 -0.6058731"
## [834] "Malassezia_restricta -3.22630460 2.1894501"
## [835] " NS_17_a_control"
## [836] "Aeriscardovia_aeriphila 0.11070337"
## [837] "Corynebacterium_accolens -0.75468321"
## [838] "Corynebacterium_atypicum -2.88862370"
## [839] "Corynebacterium_pseudodiphtheriticum -1.23507364"
## [840] "Corynebacterium_pseudogenitalium 1.37660343"
## [841] "Rothia_mucilaginosa 0.87369690"
## [842] "Cutibacterium_acnes -0.33014881"
## [843] "Cutibacterium_granulosum -1.38304835"
## [844] "Propionibacterium_humerusii -1.14637875"
## [845] "Propionibacterium_namnetense 0.05271740"
## [846] "Collinsella_aerofaciens 1.10882466"
## [847] "Collinsella_intestinalis 1.10882466"
## [848] "X.Collinsella._massiliensis 0.18226238"
## [849] "Slackia_isoflavoniconvertens 0.31742152"
## [850] "Thermoleophilum_album 0.60709667"
## [851] "Gemella_asaccharolytica 0.17707957"
## [852] "Gemella_haemolysans 0.91995313"
## [853] "Gemella_sanguinis -0.53327544"
## [854] "Staphylococcus_argenteus 0.65518206"
## [855] "Staphylococcus_aureus 0.64847643"
## [856] "Staphylococcus_epidermidis -2.21633889"
## [857] "Dolosigranulum_pigrum -0.60886770"
## [858] "Streptococcus_oralis 0.89573208"
## [859] "Limnochorda_pilosa 1.11778092"
## [860] "Anaerococcus_nagyae 0.03790095"
## [861] "Finegoldia_magna 0.26145664"
## [862] "Cupriavidus_sp 0.26945700"
## [863] "Sutterella_parvirubra 1.01468183"
## [864] "Malassezia_restricta -0.89222540"
## [865] ""
## [866] "$fitted"
## [867] " NS_8_c_qiaamp NS_8_b_lyPMA NS_8_a_control"
## [868] "Aeriscardovia_aeriphila 0.2231016 -1.9657050 -2.6744312"
## [869] "Corynebacterium_accolens 11.4399033 8.1765838 11.3010702"
## [870] "Corynebacterium_atypicum 3.5799283 0.7080843 2.3360423"
## [871] "Corynebacterium_pseudodiphtheriticum 2.7612603 2.1039754 5.3574130"
## [872] "Corynebacterium_pseudogenitalium -2.3143533 -0.5787247 -1.1502640"
## [873] "Rothia_mucilaginosa -5.2713700 -1.6918488 -3.3486112"
## [874] "Cutibacterium_acnes 7.7779920 6.7767821 6.7196382"
## [875] "Cutibacterium_granulosum 4.5149799 -0.1996452 3.5192247"
## [876] "Propionibacterium_humerusii 1.6097448 -2.4483111 -1.2499437"
## [877] "Propionibacterium_namnetense 0.9089924 -2.3522958 -0.7332818"
## [878] "Collinsella_aerofaciens -3.3685922 -1.8193833 -3.2612335"
## [879] "Collinsella_intestinalis -2.2737999 -1.8193833 -3.2612335"
## [880] "X.Collinsella._massiliensis 0.2710907 -2.3387139 -2.7334542"
## [881] "Slackia_isoflavoniconvertens -2.1032743 -1.7555055 -2.3191745"
## [882] "Thermoleophilum_album 0.4242040 -1.8193833 -2.7595055"
## [883] "Gemella_asaccharolytica -3.0003540 -4.0640047 -2.7112186"
## [884] "Gemella_haemolysans -5.3719541 -1.7461255 -3.2646907"
## [885] "Gemella_sanguinis -4.4020867 -2.0670863 -3.1179600"
## [886] "Staphylococcus_argenteus -5.3231287 -1.7649230 -3.2098562"
## [887] "Staphylococcus_aureus -5.3325227 -1.7812753 -3.2175727"
## [888] "Staphylococcus_epidermidis 4.2391170 -0.7644104 5.4288330"
## [889] "Dolosigranulum_pigrum 5.5753509 7.4436472 7.1774379"
## [890] "Streptococcus_oralis -5.2723603 -1.7726094 -3.2881102"
## [891] "Limnochorda_pilosa -1.9675915 -1.8087265 -3.2524452"
## [892] "Anaerococcus_nagyae -2.5146857 -4.2936847 -2.5543291"
## [893] "Finegoldia_magna -5.4307655 -1.8191456 -2.5396516"
## [894] "Cupriavidus_sp 6.2282427 9.8722714 5.4561241"
## [895] "Sutterella_parvirubra -1.9169937 2.9593934 -3.4444113"
## [896] "Malassezia_restricta 8.2110917 4.4176204 8.0193511"
## [897] " NS_6_c_qiaamp NS_6_b_lyPMA NS_6_a_control"
## [898] "Aeriscardovia_aeriphila 0.2742414 -1.91456516 -2.6232913"
## [899] "Corynebacterium_accolens 7.3947453 4.13142575 7.2559122"
## [900] "Corynebacterium_atypicum 1.9217651 -0.95007887 0.6778791"
## [901] "Corynebacterium_pseudodiphtheriticum -4.1156110 -4.77289590 -1.5194583"
## [902] "Corynebacterium_pseudogenitalium -3.8511272 -2.11549855 -2.6870379"
## [903] "Rothia_mucilaginosa -5.4467604 -1.86723915 -3.5240016"
## [904] "Cutibacterium_acnes 12.0409251 11.03971525 10.9825714"
## [905] "Cutibacterium_granulosum 6.5574284 1.84280319 5.5616731"
## [906] "Propionibacterium_humerusii 3.1148576 -0.94319832 0.2551691"
## [907] "Propionibacterium_namnetense 3.0191417 -0.24214648 1.3768675"
## [908] "Collinsella_aerofaciens -3.3685922 -1.81938333 -3.2612335"
## [909] "Collinsella_intestinalis -2.2737999 -1.81938333 -3.2612335"
## [910] "X.Collinsella._massiliensis 1.6817726 -0.92803191 -1.3227722"
## [911] "Slackia_isoflavoniconvertens -2.1683316 -1.82056271 -2.3842317"
## [912] "Thermoleophilum_album 0.4242040 -1.81938333 -2.7595055"
## [913] "Gemella_asaccharolytica 2.4259889 1.36233826 2.7151244"
## [914] "Gemella_haemolysans -5.4765496 -1.85072094 -3.3692861"
## [915] "Gemella_sanguinis -4.5491929 -2.21419248 -3.2650662"
## [916] "Staphylococcus_argenteus -5.5418954 -1.98368969 -3.4286229"
## [917] "Staphylococcus_aureus -5.5591327 -2.00788534 -3.4441826"
## [918] "Staphylococcus_epidermidis 4.9395861 -0.06394135 6.1293020"
## [919] "Dolosigranulum_pigrum -4.7403888 -2.87209256 -3.1383018"
## [920] "Streptococcus_oralis -5.4028645 -1.90311354 -3.4186143"
## [921] "Limnochorda_pilosa -1.9938802 -1.83501519 -3.2787339"
## [922] "Anaerococcus_nagyae 3.5254454 1.74644633 3.4858020"
## [923] "Finegoldia_magna -5.4991727 -1.88755271 -2.6080588"
## [924] "Cupriavidus_sp 6.9586822 10.60271088 6.1865635"
## [925] "Sutterella_parvirubra -1.6535483 3.22283875 -3.1809659"
## [926] "Malassezia_restricta 6.4797670 2.68629572 6.2880263"
## [927] " NS_37_c_molysis NS_37_b_qiaamp"
## [928] "Aeriscardovia_aeriphila -2.3247049 0.8033962"
## [929] "Corynebacterium_accolens 9.8790296 10.1978447"
## [930] "Corynebacterium_atypicum 1.6328698 3.5031395"
## [931] "Corynebacterium_pseudodiphtheriticum -3.8545859 -6.5061270"
## [932] "Corynebacterium_pseudogenitalium -4.7453410 -4.4349389"
## [933] "Rothia_mucilaginosa -3.2929533 -6.4904026"
## [934] "Cutibacterium_acnes 10.5181003 11.1965903"
## [935] "Cutibacterium_granulosum 6.4561169 8.0039228"
## [936] "Propionibacterium_humerusii 0.9035099 3.2970960"
## [937] "Propionibacterium_namnetense 1.0506920 3.2377818"
## [938] "Collinsella_aerofaciens -2.6053142 -3.3685922"
## [939] "Collinsella_intestinalis -2.7815741 -2.2737999"
## [940] "X.Collinsella._massiliensis -0.8420630 1.7934162"
## [941] "Slackia_isoflavoniconvertens -2.2598894 -2.1116798"
## [942] "Thermoleophilum_album -2.2698297 0.4242040"
## [943] "Gemella_asaccharolytica 2.6380452 3.5038718"
## [944] "Gemella_haemolysans -2.9952427 -6.0740686"
## [945] "Gemella_sanguinis -3.5729579 -5.3972595"
## [946] "Staphylococcus_argenteus -4.8654246 -6.2919440"
## [947] "Staphylococcus_aureus -5.0817511 -6.2559190"
## [948] "Staphylococcus_epidermidis 5.9549801 5.2980764"
## [949] "Dolosigranulum_pigrum -5.0529522 -5.8782432"
## [950] "Streptococcus_oralis -1.7748784 -6.4775663"
## [951] "Limnochorda_pilosa -1.8872005 -1.9564449"
## [952] "Anaerococcus_nagyae 2.9166181 4.3613579"
## [953] "Finegoldia_magna -3.3582434 -5.8316679"
## [954] "Cupriavidus_sp 6.3028085 6.0745845"
## [955] "Sutterella_parvirubra -0.6800306 -1.8257207"
## [956] "Malassezia_restricta 4.7102088 9.4382561"
## [957] " NS_37_a_control NS_26_d_host_zero"
## [958] "Aeriscardovia_aeriphila -2.0941365 -1.7847165"
## [959] "Corynebacterium_accolens 10.0590116 10.9855062"
## [960] "Corynebacterium_atypicum 2.2592535 3.1690553"
## [961] "Corynebacterium_pseudodiphtheriticum -3.9099743 5.8449050"
## [962] "Corynebacterium_pseudogenitalium -3.2708497 -1.0520687"
## [963] "Rothia_mucilaginosa -4.5676438 -4.3730898"
## [964] "Cutibacterium_acnes 10.1382365 8.7423591"
## [965] "Cutibacterium_granulosum 7.0081676 2.1757782"
## [966] "Propionibacterium_humerusii 0.4374075 1.0201597"
## [967] "Propionibacterium_namnetense 1.5955075 0.9112085"
## [968] "Collinsella_aerofaciens -3.2612335 -2.3021601"
## [969] "Collinsella_intestinalis -3.2612335 -2.7822030"
## [970] "X.Collinsella._massiliensis -1.2111286 -2.6472168"
## [971] "Slackia_isoflavoniconvertens -2.3275800 -2.7895933"
## [972] "Thermoleophilum_album -2.7595055 -2.5357936"
## [973] "Gemella_asaccharolytica 3.7930073 -5.2707644"
## [974] "Gemella_haemolysans -3.9668051 -3.5565246"
## [975] "Gemella_sanguinis -4.1131328 -4.3180646"
## [976] "Staphylococcus_argenteus -4.1786714 -5.2729985"
## [977] "Staphylococcus_aureus -4.1409689 -5.4911804"
## [978] "Staphylococcus_epidermidis 6.4877923 5.4254972"
## [979] "Dolosigranulum_pigrum -4.2761562 8.3604730"
## [980] "Streptococcus_oralis -4.4933161 -4.4967983"
## [981] "Limnochorda_pilosa -3.2412986 -5.5618170"
## [982] "Anaerococcus_nagyae 4.3217145 -4.2795131"
## [983] "Finegoldia_magna -2.9405540 1.2107099"
## [984] "Cupriavidus_sp 5.3024659 6.6380989"
## [985] "Sutterella_parvirubra -3.3531383 1.0364530"
## [986] "Malassezia_restricta 9.2465155 2.1671423"
## [987] " NS_26_c_benzonase NS_26_b_lyPMA"
## [988] "Aeriscardovia_aeriphila -1.42245774 -1.7933609"
## [989] "Corynebacterium_accolens 11.90585562 8.2008434"
## [990] "Corynebacterium_atypicum 3.16446360 0.1711252"
## [991] "Corynebacterium_pseudodiphtheriticum 7.00090800 2.4395408"
## [992] "Corynebacterium_pseudogenitalium -2.10712032 -1.2339492"
## [993] "Rothia_mucilaginosa -3.02037080 -2.3641996"
## [994] "Cutibacterium_acnes 8.91321646 8.4929939"
## [995] "Cutibacterium_granulosum 1.18556400 -0.1763532"
## [996] "Propionibacterium_humerusii -2.44847040 -2.4802390"
## [997] "Propionibacterium_namnetense -0.05867381 -1.7967719"
## [998] "Collinsella_aerofaciens -2.32390763 -1.8193833"
## [999] "Collinsella_intestinalis -3.21477709 -1.8193833"
## [1000] "X.Collinsella._massiliensis -2.75443372 -1.9811872"
## [1001] "Slackia_isoflavoniconvertens -1.31438154 -1.6596658"
## [1002] "Thermoleophilum_album -2.34088752 -1.8193833"
## [1003] "Gemella_asaccharolytica -2.92386877 -3.6007200"
## [1004] "Gemella_haemolysans -3.74494793 -2.1330952"
## [1005] "Gemella_sanguinis -4.12308970 -2.0859869"
## [1006] "Staphylococcus_argenteus -3.47426429 -2.0804791"
## [1007] "Staphylococcus_aureus -3.46547218 -2.0166204"
## [1008] "Staphylococcus_epidermidis 6.20405101 -0.4147297"
## [1009] "Dolosigranulum_pigrum 8.74586290 8.5518427"
## [1010] "Streptococcus_oralis -3.76408387 -2.0322822"
## [1011] "Limnochorda_pilosa -3.21492137 -1.8203433"
## [1012] "Anaerococcus_nagyae -3.18907087 -3.9564562"
## [1013] "Finegoldia_magna -3.47660450 -1.8338598"
## [1014] "Cupriavidus_sp 7.76864344 10.8445595"
## [1015] "Sutterella_parvirubra -1.78881615 3.1498764"
## [1016] "Malassezia_restricta -1.54510112 -0.5183669"
## [1017] " NS_26_a_control NS_23_d_molysis"
## [1018] "Aeriscardovia_aeriphila -2.5020871 -2.6441942"
## [1019] "Corynebacterium_accolens 11.3253299 9.8775294"
## [1020] "Corynebacterium_atypicum 1.7990832 -0.9017923"
## [1021] "Corynebacterium_pseudodiphtheriticum 5.6929784 -3.2578641"
## [1022] "Corynebacterium_pseudogenitalium -1.8054886 0.7250859"
## [1023] "Rothia_mucilaginosa -4.0209620 -0.5863453"
## [1024] "Cutibacterium_acnes 8.4358500 10.0314573"
## [1025] "Cutibacterium_granulosum 3.5425168 -1.6202353"
## [1026] "Propionibacterium_humerusii -1.2818715 -0.1061457"
## [1027] "Propionibacterium_namnetense -0.1777579 -2.0250996"
## [1028] "Collinsella_aerofaciens -3.2612335 -2.6053142"
## [1029] "Collinsella_intestinalis -3.2612335 -2.7815741"
## [1030] "X.Collinsella._massiliensis -2.3759275 -1.8998685"
## [1031] "Slackia_isoflavoniconvertens -2.2233349 -2.4282697"
## [1032] "Thermoleophilum_album -2.7595055 -2.2698297"
## [1033] "Gemella_asaccharolytica -2.2479339 -3.0800075"
## [1034] "Gemella_haemolysans -3.6516604 -0.9191311"
## [1035] "Gemella_sanguinis -3.1368607 -1.2887382"
## [1036] "Staphylococcus_argenteus -3.5254123 -3.3176118"
## [1037] "Staphylococcus_aureus -3.4529177 -3.4145523"
## [1038] "Staphylococcus_epidermidis 5.7785137 6.7447296"
## [1039] "Dolosigranulum_pigrum 8.2856334 9.6047851"
## [1040] "Streptococcus_oralis -3.5477830 1.5350570"
## [1041] "Limnochorda_pilosa -3.2640619 -1.9026665"
## [1042] "Anaerococcus_nagyae -2.2171006 -3.3412522"
## [1043] "Finegoldia_magna -2.5543659 -2.8485605"
## [1044] "Cupriavidus_sp 6.4284122 8.1225560"
## [1045] "Sutterella_parvirubra -3.2539283 -0.5084680"
## [1046] "Malassezia_restricta 3.0833638 -3.5040252"
## [1047] " NS_23_c_benzonase NS_23_b_host_zero"
## [1048] "Aeriscardovia_aeriphila -1.3339966 -1.6962553"
## [1049] "Corynebacterium_accolens 10.6380372 9.7176878"
## [1050] "Corynebacterium_atypicum 1.0899719 1.0945636"
## [1051] "Corynebacterium_pseudodiphtheriticum -2.0053229 -3.1613259"
## [1052] "Corynebacterium_pseudogenitalium 1.8979454 2.9529971"
## [1053] "Rothia_mucilaginosa -0.8604446 -2.2131636"
## [1054] "Cutibacterium_acnes 10.1289600 9.9581026"
## [1055] "Cutibacterium_granulosum -3.4251374 -2.4349232"
## [1056] "Propionibacterium_humerusii -1.7388470 1.7297831"
## [1057] "Propionibacterium_namnetense -1.3611999 -0.3913176"
## [1058] "Collinsella_aerofaciens -2.3239076 -2.3021601"
## [1059] "Collinsella_intestinalis -3.2147771 -2.7822030"
## [1060] "X.Collinsella._massiliensis -2.6474403 -2.5402234"
## [1061] "Slackia_isoflavoniconvertens -1.5870070 -3.0622187"
## [1062] "Thermoleophilum_album -2.3408875 -2.5357936"
## [1063] "Gemella_asaccharolytica -2.6009803 -4.9478759"
## [1064] "Gemella_haemolysans -1.9839810 -1.7955577"
## [1065] "Gemella_sanguinis -2.8151420 -3.0101169"
## [1066] "Staphylococcus_argenteus -2.5797107 -4.3784448"
## [1067] "Staphylococcus_aureus -2.4863246 -4.5120328"
## [1068] "Staphylococcus_epidermidis 7.7030791 6.9245253"
## [1069] "Dolosigranulum_pigrum 10.8418106 10.4564208"
## [1070] "Streptococcus_oralis -1.3996815 -2.1323959"
## [1071] "Limnochorda_pilosa -3.2076240 -5.5545196"
## [1072] "Anaerococcus_nagyae -2.9081260 -3.9985683"
## [1073] "Finegoldia_magna -3.3531097 1.3342047"
## [1074] "Cupriavidus_sp 8.4624447 7.3319001"
## [1075] "Sutterella_parvirubra -1.7164636 1.1088055"
## [1076] "Malassezia_restricta -3.5961833 0.1160601"
## [1077] " NS_23_a_control NS_22_d_molysis"
## [1078] "Aeriscardovia_aeriphila -2.4136259 -1.2400918"
## [1079] "Corynebacterium_accolens 10.0575115 10.6762784"
## [1080] "Corynebacterium_atypicum -0.2754086 1.9713954"
## [1081] "Corynebacterium_pseudodiphtheriticum -3.3132525 6.4972362"
## [1082] "Corynebacterium_pseudogenitalium 2.1995772 -2.0514677"
## [1083] "Rothia_mucilaginosa -1.8610358 -3.0601090"
## [1084] "Cutibacterium_acnes 9.6515936 8.5349365"
## [1085] "Cutibacterium_granulosum -1.0681847 4.3603762"
## [1086] "Propionibacterium_humerusii -0.5722481 -1.6812855"
## [1087] "Propionibacterium_namnetense -1.4802840 -0.2253849"
## [1088] "Collinsella_aerofaciens -3.2612335 -2.6053142"
## [1089] "Collinsella_intestinalis -3.2612335 -2.7815741"
## [1090] "X.Collinsella._massiliensis -2.2689341 -2.5489929"
## [1091] "Slackia_isoflavoniconvertens -2.4959603 -2.2842752"
## [1092] "Thermoleophilum_album -2.7595055 -2.2698297"
## [1093] "Gemella_asaccharolytica -1.9250454 -3.8946504"
## [1094] "Gemella_haemolysans -1.8906935 -2.8622459"
## [1095] "Gemella_sanguinis -1.8289130 -2.8462643"
## [1096] "Staphylococcus_argenteus -2.6308587 -4.1655724"
## [1097] "Staphylococcus_aureus -2.4737702 -4.2854290"
## [1098] "Staphylococcus_epidermidis 7.2775418 5.6331316"
## [1099] "Dolosigranulum_pigrum 10.3815812 7.0952122"
## [1100] "Streptococcus_oralis -1.1833807 -1.3265271"
## [1101] "Limnochorda_pilosa -3.2567646 -1.9179450"
## [1102] "Anaerococcus_nagyae -1.9361558 -4.1264895"
## [1103] "Finegoldia_magna -2.4308711 -3.1372626"
## [1104] "Cupriavidus_sp 7.1222134 8.1248582"
## [1105] "Sutterella_parvirubra -3.1815757 -0.5455243"
## [1106] "Malassezia_restricta 1.0322815 -2.3961869"
## [1107] " NS_22_c_benzonase NS_22_b_host_zero"
## [1108] "Aeriscardovia_aeriphila 0.0701059 -0.2921529"
## [1109] "Corynebacterium_accolens 11.4367861 10.5164367"
## [1110] "Corynebacterium_atypicum 3.9631596 3.9677513"
## [1111] "Corynebacterium_pseudodiphtheriticum 7.7497774 6.5937743"
## [1112] "Corynebacterium_pseudogenitalium -0.8786081 0.1764435"
## [1113] "Rothia_mucilaginosa -3.3342083 -4.6869273"
## [1114] "Cutibacterium_acnes 8.6324392 8.4615818"
## [1115] "Cutibacterium_granulosum 2.5554741 3.5456883"
## [1116] "Propionibacterium_humerusii -3.3139868 0.1546434"
## [1117] "Propionibacterium_namnetense 0.4385147 1.4083971"
## [1118] "Collinsella_aerofaciens -2.3239076 -2.3021601"
## [1119] "Collinsella_intestinalis -3.2147771 -2.7822030"
## [1120] "X.Collinsella._massiliensis -3.2965647 -3.1893478"
## [1121] "Slackia_isoflavoniconvertens -1.4430124 -2.9182241"
## [1122] "Thermoleophilum_album -2.3408875 -2.5357936"
## [1123] "Gemella_asaccharolytica -3.4156232 -5.7625189"
## [1124] "Gemella_haemolysans -3.9270959 -3.7386725"
## [1125] "Gemella_sanguinis -4.3726681 -4.5676430"
## [1126] "Staphylococcus_argenteus -3.4276712 -5.2264054"
## [1127] "Staphylococcus_aureus -3.3572014 -5.3829096"
## [1128] "Staphylococcus_epidermidis 6.5914811 5.8129272"
## [1129] "Dolosigranulum_pigrum 8.3322377 7.9468478"
## [1130] "Streptococcus_oralis -4.2612657 -4.9939801"
## [1131] "Limnochorda_pilosa -3.2229026 -5.5697982"
## [1132] "Anaerococcus_nagyae -3.6933634 -4.7838056"
## [1133] "Finegoldia_magna -3.6418118 1.0455025"
## [1134] "Cupriavidus_sp 8.4647468 7.3342023"
## [1135] "Sutterella_parvirubra -1.7535199 1.0717492"
## [1136] "Malassezia_restricta -2.4883450 1.2238984"
## [1137] " NS_22_a_control NS_21_d_molysis"
## [1138] "Aeriscardovia_aeriphila -1.0095234 -3.63620754"
## [1139] "Corynebacterium_accolens 10.8562604 8.61842805"
## [1140] "Corynebacterium_atypicum 2.5977791 -2.40435053"
## [1141] "Corynebacterium_pseudodiphtheriticum 6.4418478 -3.55082873"
## [1142] "Corynebacterium_pseudogenitalium -0.5769764 -0.31365930"
## [1143] "Rothia_mucilaginosa -4.3347995 1.86738026"
## [1144] "Cutibacterium_acnes 8.1550728 8.71056425"
## [1145] "Cutibacterium_granulosum 4.9124269 4.31384311"
## [1146] "Propionibacterium_humerusii -2.1473879 -0.48284029"
## [1147] "Propionibacterium_namnetense 0.3194307 -3.40182040"
## [1148] "Collinsella_aerofaciens -3.2612335 -2.60531421"
## [1149] "Collinsella_intestinalis -3.2612335 -2.78157414"
## [1150] "X.Collinsella._massiliensis -2.9180585 -2.80751824"
## [1151] "Slackia_isoflavoniconvertens -2.3519657 -2.46282226"
## [1152] "Thermoleophilum_album -2.7595055 -2.26982970"
## [1153] "Gemella_asaccharolytica -2.7396884 -3.36818087"
## [1154] "Gemella_haemolysans -3.8338083 -1.75894605"
## [1155] "Gemella_sanguinis -3.3864391 0.55933639"
## [1156] "Staphylococcus_argenteus -3.4788193 3.85269854"
## [1157] "Staphylococcus_aureus -3.3446469 7.74300064"
## [1158] "Staphylococcus_epidermidis 6.1659438 6.10791441"
## [1159] "Dolosigranulum_pigrum 7.8720082 -4.16781856"
## [1160] "Streptococcus_oralis -4.0449648 -0.09427827"
## [1161] "Limnochorda_pilosa -3.2720431 -1.90807116"
## [1162] "Anaerococcus_nagyae -2.7213931 -2.22436248"
## [1163] "Finegoldia_magna -2.7195732 -1.94617254"
## [1164] "Cupriavidus_sp 7.1245155 8.41534928"
## [1165] "Sutterella_parvirubra -3.2186321 -0.64913788"
## [1166] "Malassezia_restricta 2.1401198 -5.13715996"
## [1167] " NS_21_c_benzonase NS_21_b_host_zero"
## [1168] "Aeriscardovia_aeriphila -2.3260099 -2.6882687"
## [1169] "Corynebacterium_accolens 9.3789358 8.4585864"
## [1170] "Corynebacterium_atypicum -0.4125864 -0.4079947"
## [1171] "Corynebacterium_pseudodiphtheriticum -2.2982875 -3.4542906"
## [1172] "Corynebacterium_pseudogenitalium 0.8592002 1.9142519"
## [1173] "Rothia_mucilaginosa 1.5932810 0.2405619"
## [1174] "Cutibacterium_acnes 8.8080670 8.6372096"
## [1175] "Cutibacterium_granulosum 2.5089410 3.4991553"
## [1176] "Propionibacterium_humerusii -2.1155416 1.3530886"
## [1177] "Propionibacterium_namnetense -2.7379208 -1.7680384"
## [1178] "Collinsella_aerofaciens -2.3239076 -2.3021601"
## [1179] "Collinsella_intestinalis -3.2147771 -2.7822030"
## [1180] "X.Collinsella._massiliensis -3.5550901 -3.4478732"
## [1181] "Slackia_isoflavoniconvertens -1.6215595 -3.0967712"
## [1182] "Thermoleophilum_album -2.3408875 -2.5357936"
## [1183] "Gemella_asaccharolytica -2.8891537 -5.2360493"
## [1184] "Gemella_haemolysans -2.8237960 -2.6353727"
## [1185] "Gemella_sanguinis -0.9670675 -1.1620424"
## [1186] "Staphylococcus_argenteus 4.5905997 2.7918656"
## [1187] "Staphylococcus_aureus 8.6712283 6.6455201"
## [1188] "Staphylococcus_epidermidis 7.0662639 6.2877101"
## [1189] "Dolosigranulum_pigrum -2.9307931 -3.3161829"
## [1190] "Streptococcus_oralis -3.0290168 -3.7617312"
## [1191] "Limnochorda_pilosa -3.2130287 -5.5599243"
## [1192] "Anaerococcus_nagyae -1.7912364 -2.8816786"
## [1193] "Finegoldia_magna -2.4507218 2.2365926"
## [1194] "Cupriavidus_sp 8.7552379 7.6246934"
## [1195] "Sutterella_parvirubra -1.8571334 0.9681357"
## [1196] "Malassezia_restricta -5.2293181 -1.5170746"
## [1197] " NS_21_a_control NS_19_d_molysis"
## [1198] "Aeriscardovia_aeriphila -3.40563923 -0.73406278"
## [1199] "Corynebacterium_accolens 8.79841008 10.04098216"
## [1200] "Corynebacterium_atypicum -1.77796685 1.66976994"
## [1201] "Corynebacterium_pseudodiphtheriticum -3.60621712 7.22130528"
## [1202] "Corynebacterium_pseudogenitalium 1.16083199 -2.94290616"
## [1203] "Rothia_mucilaginosa 0.59268977 -3.78612639"
## [1204] "Cutibacterium_acnes 8.33070053 8.43486375"
## [1205] "Cutibacterium_granulosum 4.86589379 4.46513636"
## [1206] "Propionibacterium_humerusii -0.94894272 -0.40549782"
## [1207] "Propionibacterium_namnetense -2.85700485 -0.09764143"
## [1208] "Collinsella_aerofaciens -3.26123349 -2.60531421"
## [1209] "Collinsella_intestinalis -3.26123349 -2.78157414"
## [1210] "X.Collinsella._massiliensis -3.17658387 -3.07278475"
## [1211] "Slackia_isoflavoniconvertens -2.53051281 -2.23642785"
## [1212] "Thermoleophilum_album -2.75950551 -2.26982970"
## [1213] "Gemella_asaccharolytica -2.21321881 -4.72328664"
## [1214] "Gemella_haemolysans -2.73050846 -2.52921465"
## [1215] "Gemella_sanguinis 0.01916156 -2.26951425"
## [1216] "Staphylococcus_argenteus 4.53945170 -5.02809856"
## [1217] "Staphylococcus_aureus 8.68378277 -5.17126496"
## [1218] "Staphylococcus_epidermidis 6.64072662 6.16102866"
## [1219] "Dolosigranulum_pigrum -3.39102252 8.20780911"
## [1220] "Streptococcus_oralis -2.81271596 -0.68509908"
## [1221] "Limnochorda_pilosa -3.26216923 -1.91045136"
## [1222] "Anaerococcus_nagyae -0.81926609 -4.92521498"
## [1223] "Finegoldia_magna -1.52848317 -2.64708843"
## [1224] "Cupriavidus_sp 7.41500665 7.40647457"
## [1225] "Sutterella_parvirubra -3.32224562 -0.62951248"
## [1226] "Malassezia_restricta -0.60085321 -3.12277978"
## [1227] " NS_19_c_benzonase NS_19_b_host_zero"
## [1228] "Aeriscardovia_aeriphila 0.5761349 0.2138761"
## [1229] "Corynebacterium_accolens 10.8014899 9.8811405"
## [1230] "Corynebacterium_atypicum 3.6615341 3.6661258"
## [1231] "Corynebacterium_pseudodiphtheriticum 8.4738465 7.3178434"
## [1232] "Corynebacterium_pseudogenitalium -1.7700466 -0.7149950"
## [1233] "Rothia_mucilaginosa -4.0602257 -5.4129447"
## [1234] "Cutibacterium_acnes 8.5323665 8.3615091"
## [1235] "Cutibacterium_granulosum 2.6602343 3.6504485"
## [1236] "Propionibacterium_humerusii -2.0381991 1.4304310"
## [1237] "Propionibacterium_namnetense 0.5662582 1.5361405"
## [1238] "Collinsella_aerofaciens -2.3239076 -2.3021601"
## [1239] "Collinsella_intestinalis -3.2147771 -2.7822030"
## [1240] "X.Collinsella._massiliensis -3.8203566 -3.7131397"
## [1241] "Slackia_isoflavoniconvertens -1.3951651 -2.8703768"
## [1242] "Thermoleophilum_album -2.3408875 -2.5357936"
## [1243] "Gemella_asaccharolytica -4.2442595 -6.5911551"
## [1244] "Gemella_haemolysans -3.5940646 -3.4056413"
## [1245] "Gemella_sanguinis -3.7959181 -3.9908930"
## [1246] "Staphylococcus_argenteus -4.2901974 -6.0889315"
## [1247] "Staphylococcus_aureus -4.2430373 -6.2687455"
## [1248] "Staphylococcus_epidermidis 7.1193782 6.3408243"
## [1249] "Dolosigranulum_pigrum 9.4448346 9.0594447"
## [1250] "Streptococcus_oralis -3.6198376 -4.3525520"
## [1251] "Limnochorda_pilosa -3.2154089 -5.5623045"
## [1252] "Anaerococcus_nagyae -4.4920888 -5.5825311"
## [1253] "Finegoldia_magna -3.1516377 1.5356767"
## [1254] "Cupriavidus_sp 7.7463632 6.6158187"
## [1255] "Sutterella_parvirubra -1.8375080 0.9877611"
## [1256] "Malassezia_restricta -3.2149379 0.4973056"
## [1257] " NS_19_a_control NS_18_c_qiaamp"
## [1258] "Aeriscardovia_aeriphila -0.5034945 0.3199070"
## [1259] "Corynebacterium_accolens 10.2209642 9.4795368"
## [1260] "Corynebacterium_atypicum 2.2961536 2.2463271"
## [1261] "Corynebacterium_pseudodiphtheriticum 7.1659169 -4.0394793"
## [1262] "Corynebacterium_pseudogenitalium -1.4684149 -3.7921324"
## [1263] "Rothia_mucilaginosa -5.0608169 -5.3838070"
## [1264] "Cutibacterium_acnes 8.0550000 11.3323061"
## [1265] "Cutibacterium_granulosum 5.0171870 6.3072279"
## [1266] "Propionibacterium_humerusii -0.8716002 3.0372851"
## [1267] "Propionibacterium_namnetense 0.4471741 2.3797259"
## [1268] "Collinsella_aerofaciens -3.2612335 -3.3685922"
## [1269] "Collinsella_intestinalis -3.2612335 -2.2737999"
## [1270] "X.Collinsella._massiliensis -3.4418504 0.7007518"
## [1271] "Slackia_isoflavoniconvertens -2.3041184 -2.3027902"
## [1272] "Thermoleophilum_album -2.7595055 0.4242040"
## [1273] "Gemella_asaccharolytica -3.5683246 1.9513950"
## [1274] "Gemella_haemolysans -3.5007771 -5.4390068"
## [1275] "Gemella_sanguinis -2.8096891 -4.4963917"
## [1276] "Staphylococcus_argenteus -4.3413454 -5.4633729"
## [1277] "Staphylococcus_aureus -4.2304828 -5.4777949"
## [1278] "Staphylococcus_epidermidis 6.6938409 3.8915453"
## [1279] "Dolosigranulum_pigrum 8.9846051 -4.6586692"
## [1280] "Streptococcus_oralis -3.4035368 -5.3560223"
## [1281] "Limnochorda_pilosa -3.2645494 -1.9652256"
## [1282] "Anaerococcus_nagyae -3.5201186 3.1154425"
## [1283] "Finegoldia_magna -2.2293991 -5.4746191"
## [1284] "Cupriavidus_sp 6.4061319 6.4177128"
## [1285] "Sutterella_parvirubra -3.3026202 -1.6603091"
## [1286] "Malassezia_restricta 1.4135270 7.6403870"
## [1287] " NS_18_b_lyPMA NS_18_a_control"
## [1288] "Aeriscardovia_aeriphila -1.8688996 -2.5776258"
## [1289] "Corynebacterium_accolens 6.2162173 9.3407038"
## [1290] "Corynebacterium_atypicum -0.6255169 1.0024411"
## [1291] "Corynebacterium_pseudodiphtheriticum -4.6967642 -1.4433266"
## [1292] "Corynebacterium_pseudogenitalium -2.0565038 -2.6280431"
## [1293] "Rothia_mucilaginosa -1.8042858 -3.4610482"
## [1294] "Cutibacterium_acnes 10.3310962 10.2739524"
## [1295] "Cutibacterium_granulosum 1.5926027 5.3114727"
## [1296] "Propionibacterium_humerusii -1.0207707 0.1775967"
## [1297] "Propionibacterium_namnetense -0.8815623 0.7374517"
## [1298] "Collinsella_aerofaciens -1.8193833 -3.2612335"
## [1299] "Collinsella_intestinalis -1.8193833 -3.2612335"
## [1300] "X.Collinsella._massiliensis -1.9090527 -2.3037930"
## [1301] "Slackia_isoflavoniconvertens -1.9550213 -2.5186903"
## [1302] "Thermoleophilum_album -1.8193833 -2.7595055"
## [1303] "Gemella_asaccharolytica 0.8877444 2.2405305"
## [1304] "Gemella_haemolysans -1.8131782 -3.3317434"
## [1305] "Gemella_sanguinis -2.1613913 -3.2122650"
## [1306] "Staphylococcus_argenteus -1.9051672 -3.3501004"
## [1307] "Staphylococcus_aureus -1.9265476 -3.3628449"
## [1308] "Staphylococcus_epidermidis -1.1119821 5.0812613"
## [1309] "Dolosigranulum_pigrum -2.7903730 -3.0565822"
## [1310] "Streptococcus_oralis -1.8562713 -3.3717721"
## [1311] "Limnochorda_pilosa -1.8063606 -3.2500792"
## [1312] "Anaerococcus_nagyae 1.3364434 3.0757991"
## [1313] "Finegoldia_magna -1.8629992 -2.5835052"
## [1314] "Cupriavidus_sp 10.0617415 5.6455942"
## [1315] "Sutterella_parvirubra 3.2160780 -3.1877267"
## [1316] "Malassezia_restricta 3.8469157 7.4486463"
## [1317] " NS_17_c_qiaamp NS_17_b_lyPMA"
## [1318] "Aeriscardovia_aeriphila 0.6344206 -1.5543860"
## [1319] "Corynebacterium_accolens 11.2682848 8.0049653"
## [1320] "Corynebacterium_atypicum 1.9801009 -0.8917431"
## [1321] "Corynebacterium_pseudodiphtheriticum -3.5134879 -4.1707728"
## [1322] "Corynebacterium_pseudogenitalium 2.1377727 3.8734013"
## [1323] "Rothia_mucilaginosa -4.9488645 -1.3693433"
## [1324] "Cutibacterium_acnes 10.4625098 9.4612999"
## [1325] "Cutibacterium_granulosum 0.2263947 -4.4882304"
## [1326] "Propionibacterium_humerusii 1.8536584 -2.2043975"
## [1327] "Propionibacterium_namnetense -0.5628520 -3.8241402"
## [1328] "Collinsella_aerofaciens -3.3685922 -1.8193833"
## [1329] "Collinsella_intestinalis -2.2737999 -1.8193833"
## [1330] "X.Collinsella._massiliensis 0.6698736 -1.9399309"
## [1331] "Slackia_isoflavoniconvertens -2.2539302 -1.9061613"
## [1332] "Thermoleophilum_album 0.4242040 -1.8193833"
## [1333] "Gemella_asaccharolytica -2.6186239 -3.6822745"
## [1334] "Gemella_haemolysans -5.1796254 -1.5537968"
## [1335] "Gemella_sanguinis -2.9032601 -0.5682597"
## [1336] "Staphylococcus_argenteus -4.9208634 -1.3626577"
## [1337] "Staphylococcus_aureus -4.9158353 -1.3645880"
## [1338] "Staphylococcus_epidermidis 8.7816439 3.7781165"
## [1339] "Dolosigranulum_pigrum 9.7864218 11.6547181"
## [1340] "Streptococcus_oralis -5.0323911 -1.5326401"
## [1341] "Limnochorda_pilosa -1.9853361 -1.8264711"
## [1342] "Anaerococcus_nagyae -2.1506663 -3.9296654"
## [1343] "Finegoldia_magna -5.3049793 -1.6933594"
## [1344] "Cupriavidus_sp 7.3461616 10.9901903"
## [1345] "Sutterella_parvirubra -1.6396730 3.2367140"
## [1346] "Malassezia_restricta -1.0684428 -4.8619141"
## [1347] " NS_17_a_control"
## [1348] "Aeriscardovia_aeriphila -2.2631122"
## [1349] "Corynebacterium_accolens 11.1294518"
## [1350] "Corynebacterium_atypicum 0.7362149"
## [1351] "Corynebacterium_pseudodiphtheriticum -0.9173352"
## [1352] "Corynebacterium_pseudogenitalium 3.3018620"
## [1353] "Rothia_mucilaginosa -3.0261057"
## [1354] "Cutibacterium_acnes 9.4041560"
## [1355] "Cutibacterium_granulosum -0.7693605"
## [1356] "Propionibacterium_humerusii -1.0060301"
## [1357] "Propionibacterium_namnetense -2.2051262"
## [1358] "Collinsella_aerofaciens -3.2612335"
## [1359] "Collinsella_intestinalis -3.2612335"
## [1360] "X.Collinsella._massiliensis -2.3346712"
## [1361] "Slackia_isoflavoniconvertens -2.4698303"
## [1362] "Thermoleophilum_album -2.7595055"
## [1363] "Gemella_asaccharolytica -2.3294884"
## [1364] "Gemella_haemolysans -3.0723620"
## [1365] "Gemella_sanguinis -1.6191334"
## [1366] "Staphylococcus_argenteus -2.8075909"
## [1367] "Staphylococcus_aureus -2.8008853"
## [1368] "Staphylococcus_epidermidis 9.9713598"
## [1369] "Dolosigranulum_pigrum 11.3885088"
## [1370] "Streptococcus_oralis -3.0481409"
## [1371] "Limnochorda_pilosa -3.2701897"
## [1372] "Anaerococcus_nagyae -2.1903098"
## [1373] "Finegoldia_magna -2.4138655"
## [1374] "Cupriavidus_sp 6.5740429"
## [1375] "Sutterella_parvirubra -3.1670907"
## [1376] "Malassezia_restricta -1.2601834"
## [1377] ""
## [1378] "$ranef"
## [1379] " NS_17 NS_18 NS_19"
## [1380] "Aeriscardovia_aeriphila -0.056415488 -0.37092907 1.703202245"
## [1381] "Corynebacterium_accolens 1.094989218 -0.69375878 0.186501629"
## [1382] "Corynebacterium_atypicum -0.428932264 -0.16270605 1.131006489"
## [1383] "Corynebacterium_pseudodiphtheriticum -1.912194410 -2.43818582 6.171057681"
## [1384] "Corynebacterium_pseudogenitalium 3.994342315 -1.93556280 -0.775934515"
## [1385] "Rothia_mucilaginosa 0.235127754 -0.19981475 -1.799583388"
## [1386] "Cutibacterium_acnes 0.389478857 1.25927524 -0.959677123"
## [1387] "Cutibacterium_granulosum -4.559462229 1.52137095 1.227085295"
## [1388] "Propionibacterium_humerusii -0.285244981 0.89838178 -0.150815144"
## [1389] "Propionibacterium_namnetense -1.907423908 1.03515403 0.744876437"
## [1390] "Collinsella_aerofaciens 0.000000000 0.00000000 0.000000000"
## [1391] "Collinsella_intestinalis 0.000000000 0.00000000 0.000000000"
## [1392] "X.Collinsella._massiliensis 0.074046140 0.10492436 -1.033133028"
## [1393] "Slackia_isoflavoniconvertens -0.077290455 -0.12615041 0.088421491"
## [1394] "Thermoleophilum_album 0.000000000 0.00000000 0.000000000"
## [1395] "Gemella_asaccharolytica -1.430862811 3.13915609 -2.669698998"
## [1396] "Gemella_haemolysans 0.188871527 -0.07050990 -0.239543562"
## [1397] "Gemella_sanguinis 1.027896353 -0.56523521 -0.162659331"
## [1398] "Staphylococcus_argenteus -0.166408323 -0.70891780 -1.700162828"
## [1399] "Staphylococcus_aureus -0.622436335 -1.18439600 -2.052033903"
## [1400] "Staphylococcus_epidermidis 3.405848298 -1.48425024 0.128329342"
## [1401] "Dolosigranulum_pigrum 7.365737643 -7.07935343 4.961833950"
## [1402] "Streptococcus_oralis 0.213092577 -0.11053864 -0.142303278"
## [1403] "Limnochorda_pilosa -0.008956258 0.01115425 -0.003315935"
## [1404] "Anaerococcus_nagyae -1.682774037 3.58333484 -3.012582831"
## [1405] "Finegoldia_magna 0.040967284 -0.12867247 0.225433695"
## [1406] "Cupriavidus_sp 0.207935904 -0.72051285 0.040024915"
## [1407] "Sutterella_parvirubra 0.094142826 0.07350679 -0.041386725"
## [1408] "Malassezia_restricta -4.941262905 3.76756687 -2.267552490"
## [1409] " NS_21 NS_22 NS_23"
## [1410] "Aeriscardovia_aeriphila -1.1989425110 1.19717327 -0.206929201"
## [1411] "Corynebacterium_accolens -1.2360524894 0.82179783 0.023048892"
## [1412] "Corynebacterium_atypicum -2.9431139801 1.43263199 -1.440555711"
## [1413] "Corynebacterium_pseudodiphtheriticum -4.6010763315 5.44698859 -4.308111667"
## [1414] "Corynebacterium_pseudogenitalium 1.8533123408 0.11550396 2.892057526"
## [1415] "Rothia_mucilaginosa 3.8539232625 -1.07356600 1.400197700"
## [1416] "Cutibacterium_acnes -0.6839766287 -0.85960440 0.636916462"
## [1417] "Cutibacterium_granulosum 1.0757920479 1.12232513 -4.858286415"
## [1418] "Propionibacterium_humerusii -0.2281576127 -1.42660281 0.148536964"
## [1419] "Propionibacterium_namnetense -2.5593025264 0.61713298 -1.182581683"
## [1420] "Collinsella_aerofaciens 0.0000000000 0.00000000 0.000000000"
## [1421] "Collinsella_intestinalis 0.0000000000 0.00000000 0.000000000"
## [1422] "X.Collinsella._massiliensis -0.7678665178 -0.50934115 0.139783262"
## [1423] "Slackia_isoflavoniconvertens -0.1379729145 0.04057415 -0.103420382"
## [1424] "Thermoleophilum_album 0.0000000000 0.00000000 0.000000000"
## [1425] "Gemella_asaccharolytica -1.3145932233 -1.84106277 -1.026419811"
## [1426] "Gemella_haemolysans 0.5307250334 -0.57257483 1.370540031"
## [1427] "Gemella_sanguinis 2.6661913123 -0.73940933 0.818116760"
## [1428] "Staphylococcus_argenteus 7.1806342693 -0.83763668 0.010323895"
## [1429] "Staphylococcus_aureus 10.8622316966 -1.16619797 -0.295321247"
## [1430] "Staphylococcus_epidermidis 0.0752150963 -0.39956776 0.712030290"
## [1431] "Dolosigranulum_pigrum -7.4137937157 3.84923702 6.358809978"
## [1432] "Streptococcus_oralis 0.4485175312 -0.78373132 2.077852811"
## [1433] "Limnochorda_pilosa -0.0009357391 -0.01080962 0.004468924"
## [1434] "Anaerococcus_nagyae -0.3117303396 -2.21385735 -1.428620021"
## [1435] "Finegoldia_magna 0.9263495845 -0.26474048 0.023961652"
## [1436] "Cupriavidus_sp 1.0488996224 0.75840852 0.756106378"
## [1437] "Sutterella_parvirubra -0.0610121243 0.04260142 0.079657756"
## [1438] "Malassezia_restricta -4.2819326748 -1.54095964 -2.648797945"
## [1439] " NS_26 NS_37 NS_6"
## [1440] "Aeriscardovia_aeriphila -0.295390362 0.11256018 -0.416594631"
## [1441] "Corynebacterium_accolens 1.290867342 0.02454904 -2.778550345"
## [1442] "Corynebacterium_atypicum 0.633936031 1.09410635 -0.487268002"
## [1443] "Corynebacterium_pseudodiphtheriticum 4.698119215 -4.90483351 -2.514317524"
## [1444] "Corynebacterium_pseudogenitalium -1.113008210 -2.57836935 -1.994557581"
## [1445] "Rothia_mucilaginosa -0.759728512 -1.30641028 -0.262768082"
## [1446] "Cutibacterium_acnes -0.578827117 1.12355938 1.967894238"
## [1447] "Cutibacterium_granulosum -0.247584975 3.21806583 1.771571399"
## [1448] "Propionibacterium_humerusii -0.561086441 1.15819263 0.975954203"
## [1449] "Propionibacterium_namnetense 0.119944437 1.89320985 1.674569842"
## [1450] "Collinsella_aerofaciens 0.000000000 0.00000000 0.000000000"
## [1451] "Collinsella_intestinalis 0.000000000 0.00000000 0.000000000"
## [1452] "X.Collinsella._massiliensis 0.032789855 1.19758872 1.085945158"
## [1453] "Slackia_isoflavoniconvertens 0.169205031 0.06495993 0.008308163"
## [1454] "Thermoleophilum_album 0.000000000 0.00000000 0.000000000"
## [1455] "Gemella_asaccharolytica -1.349308302 4.69163284 3.613749979"
## [1456] "Gemella_haemolysans -0.390426872 -0.70557164 -0.108052620"
## [1457] "Gemella_sanguinis -0.489830900 -1.46610300 -0.618036429"
## [1458] "Staphylococcus_argenteus -0.884229748 -1.53748887 -0.787440315"
## [1459] "Staphylococcus_aureus -1.274468777 -1.96252002 -1.265733721"
## [1460] "Staphylococcus_epidermidis -0.786997805 -0.07771920 -0.436209499"
## [1461] "Dolosigranulum_pigrum 4.262862248 -8.29892740 -7.161073017"
## [1462] "Streptococcus_oralis -0.286549541 -1.23208261 -0.157380838"
## [1463] "Limnochorda_pilosa -0.002828434 0.01993489 -0.017500365"
## [1464] "Anaerococcus_nagyae -1.709564856 4.82925022 3.993337720"
## [1465] "Finegoldia_magna -0.099533143 -0.48572123 -0.153226027"
## [1466] "Cupriavidus_sp 0.062305140 -1.06364118 -0.179543505"
## [1467] "Sutterella_parvirubra 0.007305165 -0.09190483 0.080267543"
## [1468] "Malassezia_restricta -0.597715716 5.56543604 2.606946878"
## [1469] " NS_8"
## [1470] "Aeriscardovia_aeriphila -0.467734435"
## [1471] "Corynebacterium_accolens 1.266607663"
## [1472] "Corynebacterium_atypicum 1.170895144"
## [1473] "Corynebacterium_pseudodiphtheriticum 4.362553777"
## [1474] "Corynebacterium_pseudogenitalium -0.457783687"
## [1475] "Rothia_mucilaginosa -0.087377704"
## [1476] "Cutibacterium_acnes -2.295038908"
## [1477] "Cutibacterium_granulosum -0.270877039"
## [1478] "Propionibacterium_humerusii -0.529158585"
## [1479] "Propionibacterium_namnetense -0.435579462"
## [1480] "Collinsella_aerofaciens 0.000000000"
## [1481] "Collinsella_intestinalis 0.000000000"
## [1482] "X.Collinsella._massiliensis -0.324736800"
## [1483] "Slackia_isoflavoniconvertens 0.073365395"
## [1484] "Thermoleophilum_album 0.000000000"
## [1485] "Gemella_asaccharolytica -1.812592994"
## [1486] "Gemella_haemolysans -0.003457171"
## [1487] "Gemella_sanguinis -0.470930225"
## [1488] "Staphylococcus_argenteus -0.568673601"
## [1489] "Staphylococcus_aureus -1.039123727"
## [1490] "Staphylococcus_epidermidis -1.136678525"
## [1491] "Dolosigranulum_pigrum 3.154666726"
## [1492] "Streptococcus_oralis -0.026876689"
## [1493] "Limnochorda_pilosa 0.008788290"
## [1494] "Anaerococcus_nagyae -2.046793346"
## [1495] "Finegoldia_magna -0.084818871"
## [1496] "Cupriavidus_sp -0.909982945"
## [1497] "Sutterella_parvirubra -0.183177816"
## [1498] "Malassezia_restricta 4.338271582"
## [1499] ""
## [1500] "$fits"
## [1501] "NULL"
## [1502] ""maaslin_ns <- read.csv("/Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/all_results.tsv", sep = "\t")
maaslin_ns_transformed_otu <- read.csv("/Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/features/filtered_data_norm_transformed.tsv",
sep = "\t")MaAslin with CLR (Sputum)
#for sputum
capture.output(
maaslin_all2 =
Maaslin2(input_data = subset_samples(phyloseq$phyloseq_count_filtered, sample_type == "Sputum") %>%
otu_table %>% t %>% data.frame(),
input_metadata = subset_samples(phyloseq$phyloseq_count_filtered, sample_type == "Sputum") %>%
sample_data %>% data.frame(check.names = F),
output = "/Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw",
fixed_effects = c("lypma", "benzonase", "host_zero", "molysis", "qiaamp"),
transform = "NONE",
# CLR does the normalization and transformation at once.
#https://forum.biobakery.org/t/questions-about-normalization-method-clr-vs-tss/4352/2
normalization = "CLR",
random_effects = c("subject_id"),
plot_heatmap = F,
plot_scatter = F))## [1] "[1] \"Warning: Deleting existing log file: /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/maaslin2.log\""
## [2] "2023-10-25 21:20:25.063491 INFO::Writing function arguments to log file"
## [3] "2023-10-25 21:20:25.069896 INFO::Verifying options selected are valid"
## [4] "2023-10-25 21:20:25.070624 INFO::Determining format of input files"
## [5] "2023-10-25 21:20:25.071297 INFO::Input format is data samples as rows and metadata samples as rows"
## [6] "2023-10-25 21:20:25.075853 INFO::Formula for random effects: expr ~ (1 | subject_id)"
## [7] "2023-10-25 21:20:25.076647 INFO::Formula for fixed effects: expr ~ lypma + benzonase + host_zero + molysis + qiaamp"
## [8] "2023-10-25 21:20:25.077693 INFO::Filter data based on min abundance and min prevalence"
## [9] "2023-10-25 21:20:25.078647 INFO::Total samples in data: 30"
## [10] "2023-10-25 21:20:25.079375 INFO::Min samples required with min abundance for a feature not to be filtered: 3.000000"
## [11] "2023-10-25 21:20:25.082018 INFO::Total filtered features: 48"
## [12] "2023-10-25 21:20:25.08278 INFO::Filtered feature names from abundance and prevalence filtering: Corynebacterium_accolens, Corynebacterium_pseudodiphtheriticum, Corynebacterium_pseudogenitalium, Corynebacterium_tuberculostearicum, Cutibacterium_granulosum, Propionibacterium_humerusii, Propionibacterium_namnetense, Prevotella_oris, Gemella_asaccharolytica, Dolosigranulum_pigrum, Anaerococcus_nagyae, Finegoldia_magna, Candida_albicans, Candida_dubliniensis, Malassezia_restricta, Alloprevotella_tannerae, Prevotella_sp_oral_taxon_306, Prevotella_veroralis, Tannerella_sp_oral_taxon_808, Bacillus_ginsengihumi, Listeria_floridensis, Agitococcus_lubricus, Lactobacillus_fermentum, Bacillus_intestinalis, Listeria_innocua, Listeria_monocytogenes, Staphylococcus_haemolyticus, Leptotrichia_sp_oral_taxon_498, Rickettsia_felis, Candida_orthopsilosis, Nannocystis_exedens, Campylobacter_concisus, Franconibacter_helveticus, Klebsiella_pneumoniae, Salmonella_enterica, Superficieibacter_electus, Pseudomonas_fluorescens, Saccharomyces_cerevisiae, S._cerevisiae.x.S._kudriavzevii, Saccharomyces_kudriavzevii, Cryptococcus_gattii_VGI, Cryptococcus_gattii_VGII, Cryptococcus_gattii_VGIII, Cryptococcus_neoformans, Listeria_marthii, Erwinia_persicina, Pseudomonas_formosensis, Pseudomonas_putida"
## [13] "2023-10-25 21:20:25.086055 INFO::Total filtered features with variance filtering: 0"
## [14] "2023-10-25 21:20:25.086853 INFO::Filtered feature names from variance filtering:"
## [15] "2023-10-25 21:20:25.087483 INFO::Running selected normalization method: CLR"
## [16] "2023-10-25 21:20:25.089484 INFO::Applying z-score to standardize continuous metadata"
## [17] "2023-10-25 21:20:25.097157 INFO::Running selected transform method: NONE"
## [18] "2023-10-25 21:20:25.098035 INFO::Running selected analysis method: LM"
## [19] "2023-10-25 21:20:25.098989 INFO::Fitting model to feature number 1, Actinobaculum_sp_oral_taxon_183"
## [20] "2023-10-25 21:20:25.148513 INFO::Fitting model to feature number 2, Actinomyces_georgiae"
## [21] "2023-10-25 21:20:25.193404 INFO::Fitting model to feature number 3, Actinomyces_graevenitzii"
## [22] "2023-10-25 21:20:25.235332 INFO::Fitting model to feature number 4, Actinomyces_hongkongensis"
## [23] "2023-10-25 21:20:25.27787 INFO::Fitting model to feature number 5, Actinomyces_johnsonii"
## [24] "2023-10-25 21:20:25.326888 INFO::Fitting model to feature number 6, Actinomyces_massiliensis"
## [25] "2023-10-25 21:20:25.368608 INFO::Fitting model to feature number 7, Actinomyces_meyeri"
## [26] "2023-10-25 21:20:25.406612 INFO::Fitting model to feature number 8, Actinomyces_naeslundii"
## [27] "2023-10-25 21:20:25.444957 INFO::Fitting model to feature number 9, Actinomyces_odontolyticus"
## [28] "2023-10-25 21:20:25.483029 INFO::Fitting model to feature number 10, Actinomyces_oris"
## [29] "2023-10-25 21:20:25.527495 INFO::Fitting model to feature number 11, Actinomyces_sp_HMSC035G02"
## [30] "2023-10-25 21:20:25.566013 INFO::Fitting model to feature number 12, Actinomyces_sp_HPA0247"
## [31] "2023-10-25 21:20:25.602681 INFO::Fitting model to feature number 13, Actinomyces_sp_ICM47"
## [32] "2023-10-25 21:20:25.636916 INFO::Fitting model to feature number 14, Actinomyces_sp_S6_Spd3"
## [33] "2023-10-25 21:20:25.671967 INFO::Fitting model to feature number 15, Actinomyces_sp_oral_taxon_170"
## [34] "2023-10-25 21:20:25.705205 INFO::Fitting model to feature number 16, Actinomyces_sp_oral_taxon_180"
## [35] "2023-10-25 21:20:25.740337 INFO::Fitting model to feature number 17, Actinomyces_sp_oral_taxon_181"
## [36] "2023-10-25 21:20:25.776626 INFO::Fitting model to feature number 18, Actinomyces_sp_oral_taxon_414"
## [37] "2023-10-25 21:20:25.819132 INFO::Fitting model to feature number 19, Actinomyces_sp_oral_taxon_448"
## [38] "2023-10-25 21:20:25.857168 INFO::Fitting model to feature number 20, Actinomyces_sp_oral_taxon_897"
## [39] "2023-10-25 21:20:25.897242 INFO::Fitting model to feature number 21, Actinomyces_viscosus"
## [40] "2023-10-25 21:20:25.936215 INFO::Fitting model to feature number 22, Aeriscardovia_aeriphila"
## [41] "2023-10-25 21:20:25.974268 INFO::Fitting model to feature number 23, Alloscardovia_omnicolens"
## [42] "2023-10-25 21:20:26.012101 INFO::Fitting model to feature number 24, Bifidobacterium_dentium"
## [43] "2023-10-25 21:20:26.050426 INFO::Fitting model to feature number 25, Bifidobacterium_longum"
## [44] "2023-10-25 21:20:26.089789 INFO::Fitting model to feature number 26, Scardovia_wiggsiae"
## [45] "2023-10-25 21:20:26.12844 INFO::Fitting model to feature number 27, Corynebacterium_atypicum"
## [46] "2023-10-25 21:20:26.174 INFO::Fitting model to feature number 28, Corynebacterium_durum"
## [47] "2023-10-25 21:20:26.21475 INFO::Fitting model to feature number 29, Corynebacterium_matruchotii"
## [48] "2023-10-25 21:20:26.256408 INFO::Fitting model to feature number 30, Rothia_aeria"
## [49] "2023-10-25 21:20:26.295184 INFO::Fitting model to feature number 31, Rothia_dentocariosa"
## [50] "2023-10-25 21:20:26.334831 INFO::Fitting model to feature number 32, Rothia_mucilaginosa"
## [51] "2023-10-25 21:20:26.373797 INFO::Fitting model to feature number 33, Cutibacterium_acnes"
## [52] "2023-10-25 21:20:26.413084 INFO::Fitting model to feature number 34, Propionibacterium_acidifaciens"
## [53] "2023-10-25 21:20:26.453176 INFO::Fitting model to feature number 35, Pseudopropionibacterium_propionicum"
## [54] "2023-10-25 21:20:26.492896 INFO::Fitting model to feature number 36, Atopobium_deltae"
## [55] "2023-10-25 21:20:26.538252 INFO::Fitting model to feature number 37, Atopobium_parvulum"
## [56] "2023-10-25 21:20:26.577791 INFO::Fitting model to feature number 38, Atopobium_rimae"
## [57] "2023-10-25 21:20:26.616533 INFO::Fitting model to feature number 39, Olsenella_profusa"
## [58] "2023-10-25 21:20:26.654442 INFO::Fitting model to feature number 40, Olsenella_scatoligenes"
## [59] "2023-10-25 21:20:26.694906 INFO::Fitting model to feature number 41, Olsenella_uli"
## [60] "2023-10-25 21:20:26.735202 INFO::Fitting model to feature number 42, Collinsella_aerofaciens"
## [61] "2023-10-25 21:20:26.775537 INFO::Fitting model to feature number 43, Collinsella_intestinalis"
## [62] "2023-10-25 21:20:26.8205 INFO::Fitting model to feature number 44, Collinsella_stercoris"
## [63] "2023-10-25 21:20:26.865874 INFO::Fitting model to feature number 45, Enorma_massiliensis"
## [64] "2023-10-25 21:20:26.904343 INFO::Fitting model to feature number 46, X.Collinsella._massiliensis"
## [65] "2023-10-25 21:20:26.941813 INFO::Fitting model to feature number 47, Asaccharobacter_celatus"
## [66] "2023-10-25 21:20:26.976688 INFO::Fitting model to feature number 48, Denitrobacterium_detoxificans"
## [67] "2023-10-25 21:20:27.011941 INFO::Fitting model to feature number 49, Enterorhabdus_caecimuris"
## [68] "2023-10-25 21:20:27.047401 INFO::Fitting model to feature number 50, Slackia_exigua"
## [69] "2023-10-25 21:20:27.093136 INFO::Fitting model to feature number 51, Slackia_isoflavoniconvertens"
## [70] "2023-10-25 21:20:27.131006 INFO::Fitting model to feature number 52, Rubrobacter_radiotolerans"
## [71] "2023-10-25 21:20:27.169235 INFO::Fitting model to feature number 53, Thermoleophilum_album"
## [72] "2023-10-25 21:20:27.215162 INFO::Fitting model to feature number 54, Porphyromonas_endodontalis"
## [73] "2023-10-25 21:20:27.256231 INFO::Fitting model to feature number 55, Porphyromonas_somerae"
## [74] "2023-10-25 21:20:27.295135 INFO::Fitting model to feature number 56, Prevotella_histicola"
## [75] "2023-10-25 21:20:27.332889 INFO::Fitting model to feature number 57, Prevotella_melaninogenica"
## [76] "2023-10-25 21:20:27.374048 INFO::Fitting model to feature number 58, Kouleothrix_aurantiaca"
## [77] "2023-10-25 21:20:27.407306 INFO::Fitting model to feature number 59, Hydrogenibacillus_schlegelii"
## [78] "2023-10-25 21:20:27.440785 INFO::Fitting model to feature number 60, Gemella_bergeri"
## [79] "2023-10-25 21:20:27.479011 INFO::Fitting model to feature number 61, Gemella_haemolysans"
## [80] "2023-10-25 21:20:27.513238 INFO::Fitting model to feature number 62, Gemella_morbillorum"
## [81] "2023-10-25 21:20:27.556505 INFO::Fitting model to feature number 63, Gemella_sanguinis"
## [82] "2023-10-25 21:20:27.594033 INFO::Fitting model to feature number 64, Brochothrix_campestris"
## [83] "2023-10-25 21:20:27.628378 INFO::Fitting model to feature number 65, Staphylococcus_argenteus"
## [84] "2023-10-25 21:20:27.660872 INFO::Fitting model to feature number 66, Staphylococcus_aureus"
## [85] "2023-10-25 21:20:27.693399 INFO::Fitting model to feature number 67, Staphylococcus_epidermidis"
## [86] "2023-10-25 21:20:27.726233 INFO::Fitting model to feature number 68, Staphylococcus_schweitzeri"
## [87] "2023-10-25 21:20:27.760325 INFO::Fitting model to feature number 69, Abiotrophia_defectiva"
## [88] "2023-10-25 21:20:27.800342 INFO::Fitting model to feature number 70, Abiotrophia_sp_HMSC24B09"
## [89] "2023-10-25 21:20:27.846507 INFO::Fitting model to feature number 71, Granulicatella_adiacens"
## [90] "2023-10-25 21:20:27.883755 INFO::Fitting model to feature number 72, Granulicatella_elegans"
## [91] "2023-10-25 21:20:27.92234 INFO::Fitting model to feature number 73, Enterococcus_faecalis"
## [92] "2023-10-25 21:20:27.959035 INFO::Fitting model to feature number 74, Lactobacillus_rhamnosus"
## [93] "2023-10-25 21:20:27.999225 INFO::Fitting model to feature number 75, Streptococcus_anginosus"
## [94] "2023-10-25 21:20:28.036038 INFO::Fitting model to feature number 76, Streptococcus_australis"
## [95] "2023-10-25 21:20:28.07456 INFO::Fitting model to feature number 77, Streptococcus_cristatus"
## [96] "2023-10-25 21:20:28.11253 INFO::Fitting model to feature number 78, Streptococcus_gordonii"
## [97] "2023-10-25 21:20:28.151242 INFO::Fitting model to feature number 79, Streptococcus_infantis"
## [98] "2023-10-25 21:20:28.19888 INFO::Fitting model to feature number 80, Streptococcus_milleri"
## [99] "2023-10-25 21:20:28.236508 INFO::Fitting model to feature number 81, Streptococcus_mitis"
## [100] "2023-10-25 21:20:28.273774 INFO::Fitting model to feature number 82, Streptococcus_oralis"
## [101] "2023-10-25 21:20:28.311529 INFO::Fitting model to feature number 83, Streptococcus_parasanguinis"
## [102] "2023-10-25 21:20:28.348358 INFO::Fitting model to feature number 84, Streptococcus_peroris"
## [103] "2023-10-25 21:20:28.384841 INFO::Fitting model to feature number 85, Streptococcus_pneumoniae"
## [104] "2023-10-25 21:20:28.417876 INFO::Fitting model to feature number 86, Streptococcus_pseudopneumoniae"
## [105] "2023-10-25 21:20:28.454111 INFO::Fitting model to feature number 87, Streptococcus_salivarius"
## [106] "2023-10-25 21:20:28.49464 INFO::Fitting model to feature number 88, Streptococcus_sanguinis"
## [107] "2023-10-25 21:20:28.540565 INFO::Fitting model to feature number 89, Streptococcus_sp_A12"
## [108] "2023-10-25 21:20:28.58061 INFO::Fitting model to feature number 90, Streptococcus_sp_F0442"
## [109] "2023-10-25 21:20:28.620072 INFO::Fitting model to feature number 91, Streptococcus_sp_HMSC034E03"
## [110] "2023-10-25 21:20:28.660225 INFO::Fitting model to feature number 92, Streptococcus_sp_HMSC067H01"
## [111] "2023-10-25 21:20:28.700726 INFO::Fitting model to feature number 93, Streptococcus_sp_HMSC071D03"
## [112] "2023-10-25 21:20:28.739248 INFO::Fitting model to feature number 94, Streptococcus_sp_HPH0090"
## [113] "2023-10-25 21:20:28.778486 INFO::Fitting model to feature number 95, Streptococcus_sp_M334"
## [114] "2023-10-25 21:20:28.817968 INFO::Fitting model to feature number 96, Streptococcus_vestibularis"
## [115] "2023-10-25 21:20:28.856147 INFO::Fitting model to feature number 97, Eubacterium_brachy"
## [116] "2023-10-25 21:20:28.902303 INFO::Fitting model to feature number 98, Eubacterium_infirmum"
## [117] "2023-10-25 21:20:28.94172 INFO::Fitting model to feature number 99, Eubacterium_nodatum"
## [118] "2023-10-25 21:20:28.980225 INFO::Fitting model to feature number 100, Eubacterium_sulci"
## [119] "2023-10-25 21:20:29.018448 INFO::Fitting model to feature number 101, Mogibacterium_diversum"
## [120] "2023-10-25 21:20:29.056902 INFO::Fitting model to feature number 102, Mogibacterium_pumilum"
## [121] "2023-10-25 21:20:29.096236 INFO::Fitting model to feature number 103, Mogibacterium_timidum"
## [122] "2023-10-25 21:20:29.135439 INFO::Fitting model to feature number 104, Lachnoanaerobaculum_saburreum"
## [123] "2023-10-25 21:20:29.175124 INFO::Fitting model to feature number 105, Oribacterium_parvum"
## [124] "2023-10-25 21:20:29.222709 INFO::Fitting model to feature number 106, Oribacterium_sinus"
## [125] "2023-10-25 21:20:29.262611 INFO::Fitting model to feature number 107, Oribacterium_sp_oral_taxon_078"
## [126] "2023-10-25 21:20:29.301826 INFO::Fitting model to feature number 108, Stomatobaculum_longum"
## [127] "2023-10-25 21:20:29.340811 INFO::Fitting model to feature number 109, Peptostreptococcus_stomatis"
## [128] "2023-10-25 21:20:29.378738 INFO::Fitting model to feature number 110, Bulleidia_extructa"
## [129] "2023-10-25 21:20:29.41675 INFO::Fitting model to feature number 111, Solobacterium_moorei"
## [130] "2023-10-25 21:20:29.454423 INFO::Fitting model to feature number 112, Limnochorda_pilosa"
## [131] "2023-10-25 21:20:29.491779 INFO::Fitting model to feature number 113, Veillonella_atypica"
## [132] "2023-10-25 21:20:29.525788 INFO::Fitting model to feature number 114, Veillonella_dispar"
## [133] "2023-10-25 21:20:29.575711 INFO::Fitting model to feature number 115, Veillonella_infantium"
## [134] "2023-10-25 21:20:29.614771 INFO::Fitting model to feature number 116, Veillonella_parvula"
## [135] "2023-10-25 21:20:29.654668 INFO::Fitting model to feature number 117, Veillonella_sp_T11011_6"
## [136] "2023-10-25 21:20:29.707506 INFO::Fitting model to feature number 118, Parvimonas_micra"
## [137] "2023-10-25 21:20:29.758015 INFO::Fitting model to feature number 119, Parvimonas_sp_oral_taxon_110"
## [138] "2023-10-25 21:20:29.808664 INFO::Fitting model to feature number 120, Parvimonas_sp_oral_taxon_393"
## [139] "2023-10-25 21:20:29.859821 INFO::Fitting model to feature number 121, Fusobacterium_nucleatum"
## [140] "2023-10-25 21:20:29.909763 INFO::Fitting model to feature number 122, Leptotrichia_wadei"
## [141] "2023-10-25 21:20:29.945499 INFO::Fitting model to feature number 123, Gemmata_obscuriglobus"
## [142] "2023-10-25 21:20:29.990626 INFO::Fitting model to feature number 124, Paludisphaera_borealis"
## [143] "2023-10-25 21:20:30.031463 INFO::Fitting model to feature number 125, Achromobacter_xylosoxidans"
## [144] "2023-10-25 21:20:30.069765 INFO::Fitting model to feature number 126, Cupriavidus_sp"
## [145] "2023-10-25 21:20:30.106442 INFO::Fitting model to feature number 127, Sutterella_parvirubra"
## [146] "2023-10-25 21:20:30.141799 INFO::Fitting model to feature number 128, Anaerobiospirillum_thomasii"
## [147] "2023-10-25 21:20:30.178999 INFO::Fitting model to feature number 129, Cardiobacterium_hominis"
## [148] "2023-10-25 21:20:30.216478 INFO::Fitting model to feature number 130, Cardiobacterium_valvarum"
## [149] "2023-10-25 21:20:30.253459 INFO::Fitting model to feature number 131, Alkalilimnicola_ehrlichii"
## [150] "2023-10-25 21:20:30.297144 INFO::Fitting model to feature number 132, Escherichia_coli"
## [151] "2023-10-25 21:20:30.334263 INFO::Fitting model to feature number 133, Thiohalorhabdus_denitrificans"
## [152] "2023-10-25 21:20:30.370825 INFO::Fitting model to feature number 134, Pseudomonas_aeruginosa"
## [153] "2023-10-25 21:20:30.406501 INFO::Fitting model to feature number 135, Acholeplasma_oculi"
## [154] "2023-10-25 21:20:30.439651 INFO::Fitting model to feature number 136, Candida_parapsilosis"
## [155] "2023-10-25 21:20:30.476117 INFO::Fitting model to feature number 137, Nakamurella_silvestris"
## [156] "2023-10-25 21:20:30.512903 INFO::Fitting model to feature number 138, Prevotella_jejuni"
## [157] "2023-10-25 21:20:30.549805 INFO::Fitting model to feature number 139, Prevotella_pallens"
## [158] "2023-10-25 21:20:30.588912 INFO::Fitting model to feature number 140, Prevotella_salivae"
## [159] "2023-10-25 21:20:30.634737 INFO::Fitting model to feature number 141, Tannerella_sp_oral_taxon_HOT_286"
## [160] "2023-10-25 21:20:30.674038 INFO::Fitting model to feature number 142, Capnocytophaga_gingivalis"
## [161] "2023-10-25 21:20:30.712392 INFO::Fitting model to feature number 143, Lactobacillus_gasseri"
## [162] "2023-10-25 21:20:30.751029 INFO::Fitting model to feature number 144, Sharpea_azabuensis"
## [163] "2023-10-25 21:20:30.789271 INFO::Fitting model to feature number 145, Streptococcus_mutans"
## [164] "2023-10-25 21:20:30.828548 INFO::Fitting model to feature number 146, Oribacterium_asaccharolyticum"
## [165] "2023-10-25 21:20:30.868734 INFO::Fitting model to feature number 147, Megasphaera_micronuciformis"
## [166] "2023-10-25 21:20:30.910259 INFO::Fitting model to feature number 148, Neisseria_flavescens"
## [167] "2023-10-25 21:20:30.957951 INFO::Fitting model to feature number 149, Neisseria_subflava"
## [168] "2023-10-25 21:20:30.998075 INFO::Fitting model to feature number 150, Stenotrophomonas_maltophilia"
## [169] "2023-10-25 21:20:31.037265 INFO::Fitting model to feature number 151, Stenotrophomonas_pavanii"
## [170] "2023-10-25 21:20:31.075967 INFO::Fitting model to feature number 152, Stenotrophomonas_rhizophila"
## [171] "2023-10-25 21:20:31.11458 INFO::Fitting model to feature number 153, Streptococcus_sobrinus"
## [172] "2023-10-25 21:20:31.1534 INFO::Fitting model to feature number 154, Eggerthia_catenaformis"
## [173] "2023-10-25 21:20:31.191573 INFO::Fitting model to feature number 155, Haemophilus_parainfluenzae"
## [174] "2023-10-25 21:20:31.259886 INFO::Counting total values for each feature"
## [175] "2023-10-25 21:20:31.288866 INFO::Writing filtered data to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/features/filtered_data.tsv"
## [176] "2023-10-25 21:20:31.294114 INFO::Writing filtered, normalized data to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/features/filtered_data_norm.tsv"
## [177] "2023-10-25 21:20:31.300757 INFO::Writing filtered, normalized, transformed data to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/features/filtered_data_norm_transformed.tsv"
## [178] "2023-10-25 21:20:31.307511 WARNING::Deleting existing residuals file: /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/residuals.rds"
## [179] "2023-10-25 21:20:31.308732 INFO::Writing residuals to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/residuals.rds"
## [180] "2023-10-25 21:20:31.311095 WARNING::Deleting existing fitted file: /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/fitted.rds"
## [181] "2023-10-25 21:20:31.312134 INFO::Writing fitted values to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/fitted.rds"
## [182] "2023-10-25 21:20:31.314355 WARNING::Deleting existing ranef file: /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/ranef.rds"
## [183] "2023-10-25 21:20:31.315435 INFO::Writing extracted random effects to file /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/fits/ranef.rds"
## [184] "2023-10-25 21:20:31.31743 INFO::Writing all results to file (ordered by increasing q-values): /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/all_results.tsv"
## [185] "2023-10-25 21:20:31.323175 INFO::Writing the significant results (those which are less than or equal to the threshold of 0.250000 ) to file (ordered by increasing q-values): /Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/significant_results.tsv"
## [186] "$results"
## [187] " feature metadata value coef"
## [188] "1 Gemella_haemolysans lypma lypma 2.3985001851"
## [189] "2 Gemella_haemolysans benzonase benzonase 2.3688636713"
## [190] "3 Gemella_haemolysans qiaamp qiaamp 2.2823431720"
## [191] "4 Escherichia_coli molysis molysis -2.7589078418"
## [192] "5 Pseudomonas_aeruginosa molysis molysis -3.3220791300"
## [193] "6 Gemella_haemolysans molysis molysis 2.1010828972"
## [194] "7 Gemella_haemolysans host_zero host_zero 2.0555899111"
## [195] "8 Achromobacter_xylosoxidans molysis molysis -2.6895245129"
## [196] "9 Streptococcus_infantis lypma lypma 2.4170445327"
## [197] "10 Escherichia_coli host_zero host_zero -2.2158891983"
## [198] "11 Streptococcus_infantis benzonase benzonase 2.2927257765"
## [199] "12 Achromobacter_xylosoxidans host_zero host_zero -2.2892438671"
## [200] "13 Streptococcus_infantis qiaamp qiaamp 2.1891797850"
## [201] "14 Streptococcus_infantis molysis molysis 2.0665799650"
## [202] "15 Streptococcus_infantis host_zero host_zero 2.0574369559"
## [203] "16 Pseudomonas_aeruginosa host_zero host_zero -2.1759112331"
## [204] "17 Escherichia_coli qiaamp qiaamp -1.7682917911"
## [205] "18 Achromobacter_xylosoxidans qiaamp qiaamp -1.8846788493"
## [206] "19 Rothia_dentocariosa qiaamp qiaamp 1.8821974463"
## [207] "20 Granulicatella_elegans qiaamp qiaamp 1.8947639203"
## [208] "21 Rothia_dentocariosa lypma lypma 1.8641077349"
## [209] "22 Pseudomonas_aeruginosa qiaamp qiaamp -1.6911260801"
## [210] "23 Granulicatella_elegans benzonase benzonase 1.7717370696"
## [211] "24 Granulicatella_elegans host_zero host_zero 1.7288351610"
## [212] "25 Granulicatella_elegans molysis molysis 1.7330772866"
## [213] "26 Actinomyces_oris qiaamp qiaamp 2.3961593077"
## [214] "27 Actinomyces_oris molysis molysis 2.3783001901"
## [215] "28 Rothia_dentocariosa benzonase benzonase 1.6698695226"
## [216] "29 Gemella_morbillorum qiaamp qiaamp 1.7216986491"
## [217] "30 Granulicatella_elegans lypma lypma 1.6650598189"
## [218] "31 Streptococcus_sp_F0442 qiaamp qiaamp 2.0478227092"
## [219] "32 Alkalilimnicola_ehrlichii molysis molysis -3.2500848759"
## [220] "33 Rothia_dentocariosa host_zero host_zero 1.6355614064"
## [221] "34 Streptococcus_australis qiaamp qiaamp 2.3692640607"
## [222] "35 Actinomyces_sp_oral_taxon_180 qiaamp qiaamp 1.6447012265"
## [223] "36 Rothia_dentocariosa molysis molysis 1.5887382465"
## [224] "37 Actinomyces_oris host_zero host_zero 2.2162433500"
## [225] "38 Escherichia_coli benzonase benzonase -1.2570640800"
## [226] "39 Streptococcus_anginosus qiaamp qiaamp 1.8033844399"
## [227] "40 Streptococcus_sp_F0442 host_zero host_zero 1.9139458086"
## [228] "41 Actinomyces_sp_oral_taxon_181 qiaamp qiaamp 2.2255857079"
## [229] "42 Actinomyces_oris benzonase benzonase 2.1161616891"
## [230] "43 Streptococcus_anginosus host_zero host_zero 1.7133121797"
## [231] "44 Streptococcus_sp_F0442 molysis molysis 1.8259231965"
## [232] "45 Streptococcus_anginosus benzonase benzonase 1.7081823418"
## [233] "46 Streptococcus_anginosus molysis molysis 1.6958430507"
## [234] "47 Actinomyces_sp_S6_Spd3 qiaamp qiaamp 1.9909948791"
## [235] "48 Streptococcus_sp_F0442 lypma lypma 1.7896182826"
## [236] "49 Gemella_morbillorum host_zero host_zero 1.4930720261"
## [237] "50 Actinomyces_sp_oral_taxon_181 host_zero host_zero 2.0989362247"
## [238] "51 Actinomyces_sp_oral_taxon_181 molysis molysis 2.0744895487"
## [239] "52 Scardovia_wiggsiae qiaamp qiaamp 1.6090651655"
## [240] "53 Gemella_morbillorum molysis molysis 1.4691929588"
## [241] "54 Prevotella_pallens molysis molysis -2.4864801943"
## [242] "55 Megasphaera_micronuciformis molysis molysis -2.0037171754"
## [243] "56 Achromobacter_xylosoxidans benzonase benzonase -1.1991515195"
## [244] "57 Veillonella_atypica qiaamp qiaamp -2.7582861971"
## [245] "58 Streptococcus_australis benzonase benzonase 1.9612973456"
## [246] "59 Streptococcus_australis host_zero host_zero 1.9442456173"
## [247] "60 Streptococcus_australis molysis molysis 1.9323810605"
## [248] "61 Actinomyces_sp_HMSC035G02 qiaamp qiaamp 1.8525274516"
## [249] "62 Prevotella_salivae molysis molysis -2.4230768908"
## [250] "63 Actinomyces_sp_S6_Spd3 molysis molysis 1.7870079070"
## [251] "64 Actinomyces_sp_S6_Spd3 host_zero host_zero 1.7797830244"
## [252] "65 Atopobium_deltae host_zero host_zero -1.9339180875"
## [253] "66 Cupriavidus_sp qiaamp qiaamp 2.0557604958"
## [254] "67 Streptococcus_sp_F0442 benzonase benzonase 1.5794869410"
## [255] "68 Actinomyces_sp_oral_taxon_180 molysis molysis 1.3177353994"
## [256] "69 Haemophilus_parainfluenzae molysis molysis -2.5638437509"
## [257] "70 Porphyromonas_endodontalis molysis molysis -2.1768495025"
## [258] "71 Actinomyces_sp_oral_taxon_180 host_zero host_zero 1.3013571869"
## [259] "72 Thiohalorhabdus_denitrificans molysis molysis -2.0952015427"
## [260] "73 Oribacterium_parvum molysis molysis -1.7700262010"
## [261] "74 Cupriavidus_sp host_zero host_zero 1.9996687665"
## [262] "75 Eggerthia_catenaformis molysis molysis -2.7393567289"
## [263] "76 Prevotella_melaninogenica molysis molysis -2.3873689026"
## [264] "77 Atopobium_rimae qiaamp qiaamp 1.7896763198"
## [265] "78 Cupriavidus_sp molysis molysis 1.9855933396"
## [266] "79 Denitrobacterium_detoxificans benzonase benzonase -1.3674675587"
## [267] "80 Megasphaera_micronuciformis host_zero host_zero -1.7736408260"
## [268] "81 Gemella_bergeri qiaamp qiaamp 1.3120416331"
## [269] "82 Actinomyces_sp_HMSC035G02 host_zero host_zero 1.6969250194"
## [270] "83 Gemella_morbillorum lypma lypma 1.2612697087"
## [271] "84 Veillonella_atypica host_zero host_zero -2.4009681189"
## [272] "85 Atopobium_parvulum qiaamp qiaamp 1.4949906893"
## [273] "86 Atopobium_rimae host_zero host_zero 1.6631108659"
## [274] "87 Granulicatella_adiacens qiaamp qiaamp 1.2397713472"
## [275] "88 Actinomyces_sp_HMSC035G02 molysis molysis 1.6271531223"
## [276] "89 Asaccharobacter_celatus benzonase benzonase -1.3674675587"
## [277] "90 Megasphaera_micronuciformis qiaamp qiaamp -1.6413427172"
## [278] "91 Haemophilus_parainfluenzae host_zero host_zero -2.2923422303"
## [279] "92 Stomatobaculum_longum host_zero host_zero -2.1786866090"
## [280] "93 Tannerella_sp_oral_taxon_HOT_286 molysis molysis -2.0865410799"
## [281] "94 Actinomyces_sp_HPA0247 qiaamp qiaamp 1.4592597822"
## [282] "95 Scardovia_wiggsiae molysis molysis 1.2804619259"
## [283] "96 Gemella_morbillorum benzonase benzonase 1.1791737349"
## [284] "97 Streptococcus_australis lypma lypma 1.6217182758"
## [285] "98 Pseudopropionibacterium_propionicum qiaamp qiaamp 1.4462874227"
## [286] "99 Atopobium_rimae molysis molysis 1.6011854958"
## [287] "100 Leptotrichia_wadei host_zero host_zero -2.3786538832"
## [288] "101 Prevotella_pallens qiaamp qiaamp -1.9618588833"
## [289] "102 Stenotrophomonas_pavanii molysis molysis -2.6619740232"
## [290] "103 Streptococcus_gordonii qiaamp qiaamp 1.3927545738"
## [291] "104 Lactobacillus_gasseri host_zero host_zero -1.7264201106"
## [292] "105 Streptococcus_gordonii lypma lypma 1.3810177117"
## [293] "106 Scardovia_wiggsiae host_zero host_zero 1.2469450958"
## [294] "107 Atopobium_parvulum host_zero host_zero 1.4095862683"
## [295] "108 Actinomyces_sp_oral_taxon_181 benzonase benzonase 1.6045079398"
## [296] "109 Sutterella_parvirubra qiaamp qiaamp -1.4495623717"
## [297] "110 Parvimonas_micra qiaamp qiaamp 1.7080943097"
## [298] "111 Veillonella_dispar qiaamp qiaamp -1.6318101658"
## [299] "112 X.Collinsella._massiliensis qiaamp qiaamp 0.9122326614"
## [300] "113 Enterorhabdus_caecimuris benzonase benzonase -1.3674675587"
## [301] "114 Actinomyces_sp_S6_Spd3 benzonase benzonase 1.4161853782"
## [302] "115 Asaccharobacter_celatus qiaamp qiaamp -1.2239939181"
## [303] "116 Prevotella_histicola molysis molysis -2.3952746750"
## [304] "117 Streptococcus_gordonii molysis molysis 1.2931873978"
## [305] "118 Prevotella_melaninogenica qiaamp qiaamp -1.9596121253"
## [306] "119 Actinomyces_naeslundii qiaamp qiaamp 1.6102119509"
## [307] "120 Slackia_exigua qiaamp qiaamp 1.1459446141"
## [308] "121 Actinomyces_odontolyticus qiaamp qiaamp 1.4934012606"
## [309] "122 Atopobium_deltae qiaamp qiaamp -1.5038525548"
## [310] "123 Brochothrix_campestris host_zero host_zero -1.4780993726"
## [311] "124 Capnocytophaga_gingivalis molysis molysis -2.1805255676"
## [312] "125 Slackia_exigua host_zero host_zero 1.1393719431"
## [313] "126 Pseudopropionibacterium_propionicum host_zero host_zero 1.2992087225"
## [314] "127 Atopobium_parvulum molysis molysis 1.2792004227"
## [315] "128 Gemella_bergeri molysis molysis 1.0710484251"
## [316] "129 Solobacterium_moorei qiaamp qiaamp 1.4791554144"
## [317] "130 Prevotella_jejuni molysis molysis -2.0862105735"
## [318] "131 Enorma_massiliensis benzonase benzonase -1.0032756632"
## [319] "132 Cardiobacterium_valvarum molysis molysis -1.5727531657"
## [320] "133 Pseudopropionibacterium_propionicum molysis molysis 1.2765985019"
## [321] "134 Actinomyces_graevenitzii molysis molysis 1.2877909865"
## [322] "135 Actinomyces_sp_ICM47 qiaamp qiaamp 1.6405985140"
## [323] "136 Actinomyces_sp_HPA0247 host_zero host_zero 1.2516133589"
## [324] "137 Corynebacterium_atypicum qiaamp qiaamp -1.4965737027"
## [325] "138 Atopobium_deltae molysis molysis -1.4452830304"
## [326] "139 Streptococcus_sanguinis lypma lypma 1.5606247697"
## [327] "140 Veillonella_infantium qiaamp qiaamp -1.7653822452"
## [328] "141 Pseudomonas_aeruginosa benzonase benzonase -0.9220208753"
## [329] "142 Streptococcus_gordonii host_zero host_zero 1.2067693414"
## [330] "143 Oribacterium_parvum qiaamp qiaamp -1.3548371924"
## [331] "144 Haemophilus_parainfluenzae qiaamp qiaamp -1.9294172752"
## [332] "145 Oribacterium_parvum host_zero host_zero -1.3533593960"
## [333] "146 Actinomyces_oris lypma lypma 1.3786968551"
## [334] "147 Granulicatella_adiacens molysis molysis 1.0231983354"
## [335] "148 Gemella_bergeri host_zero host_zero 1.0261611771"
## [336] "149 Parvimonas_micra molysis molysis 1.4916536509"
## [337] "150 Actinomyces_naeslundii host_zero host_zero 1.4835925992"
## [338] "151 Enterococcus_faecalis molysis molysis -2.0369775320"
## [339] "152 Granulicatella_adiacens host_zero host_zero 1.0023097483"
## [340] "153 Stomatobaculum_longum qiaamp qiaamp -1.7904498388"
## [341] "154 Brochothrix_campestris benzonase benzonase -1.3674675587"
## [342] "155 Solobacterium_moorei molysis molysis 1.3865627332"
## [343] "156 Sharpea_azabuensis qiaamp qiaamp -1.5239188455"
## [344] "157 Aeriscardovia_aeriphila qiaamp qiaamp 0.8385550656"
## [345] "158 X.Collinsella._massiliensis molysis molysis 0.8024396564"
## [346] "159 Solobacterium_moorei benzonase benzonase 1.3759229836"
## [347] "160 Prevotella_salivae qiaamp qiaamp -1.7038854424"
## [348] "161 Enterorhabdus_caecimuris qiaamp qiaamp -1.2000253619"
## [349] "162 Streptococcus_oralis benzonase benzonase 1.5221385302"
## [350] "163 Stenotrophomonas_rhizophila molysis molysis -2.5561224750"
## [351] "164 Actinomyces_sp_HPA0247 molysis molysis 1.1784121235"
## [352] "165 Atopobium_deltae benzonase benzonase -1.3674675587"
## [353] "166 Corynebacterium_atypicum molysis molysis -1.4146638761"
## [354] "167 Oribacterium_sp_oral_taxon_078 benzonase benzonase -1.3674675587"
## [355] "168 Actinomyces_graevenitzii qiaamp qiaamp 1.1948471024"
## [356] "169 X.Collinsella._massiliensis host_zero host_zero 0.7918702760"
## [357] "170 Nakamurella_silvestris molysis molysis -1.4915050155"
## [358] "171 Veillonella_dispar host_zero host_zero -1.3677835067"
## [359] "172 Escherichia_coli lypma lypma -0.7134648614"
## [360] "173 Actinomyces_sp_ICM47 molysis molysis 1.4970648321"
## [361] "174 Veillonella_infantium host_zero host_zero -1.6304121219"
## [362] "175 Actinomyces_sp_oral_taxon_170 qiaamp qiaamp 0.9102389963"
## [363] "176 Prevotella_jejuni qiaamp qiaamp -1.8722739824"
## [364] "177 Actinomyces_sp_oral_taxon_170 benzonase benzonase -0.9065490127"
## [365] "178 Slackia_exigua molysis molysis 1.0042869201"
## [366] "179 Parvimonas_micra benzonase benzonase 1.3951966723"
## [367] "180 Corynebacterium_atypicum benzonase benzonase -1.3674675587"
## [368] "181 Leptotrichia_wadei qiaamp qiaamp -1.8722739824"
## [369] "182 Actinomyces_sp_ICM47 host_zero host_zero 1.4643593019"
## [370] "183 Stenotrophomonas_maltophilia molysis molysis -1.7345414721"
## [371] "184 Actinomyces_naeslundii molysis molysis 1.3758095475"
## [372] "185 Actinomyces_odontolyticus host_zero host_zero 1.2890064698"
## [373] "186 Streptococcus_sp_A12 qiaamp qiaamp 1.2888493579"
## [374] "187 Olsenella_scatoligenes qiaamp qiaamp 0.8565244961"
## [375] "188 Anaerobiospirillum_thomasii qiaamp qiaamp -1.2963929680"
## [376] "189 Actinomyces_odontolyticus molysis molysis 1.2737628166"
## [377] "190 Rubrobacter_radiotolerans host_zero host_zero -1.4717890160"
## [378] "191 Solobacterium_moorei host_zero host_zero 1.2734813551"
## [379] "192 Streptococcus_sanguinis molysis molysis 1.3776644812"
## [380] "193 Cutibacterium_acnes benzonase benzonase -1.3674675587"
## [381] "194 Streptococcus_parasanguinis lypma lypma 0.4886147999"
## [382] "195 Nakamurella_silvestris qiaamp qiaamp -1.3935079278"
## [383] "196 Streptococcus_gordonii benzonase benzonase 1.0614182976"
## [384] "197 Prevotella_pallens host_zero host_zero -1.4813774626"
## [385] "198 Atopobium_rimae benzonase benzonase 1.2114052392"
## [386] "199 Streptococcus_oralis molysis molysis 1.3986199262"
## [387] "200 Actinomyces_graevenitzii host_zero host_zero 1.1023639624"
## [388] "201 Kouleothrix_aurantiaca qiaamp qiaamp -1.3853288867"
## [389] "202 Rubrobacter_radiotolerans qiaamp qiaamp -1.4381227750"
## [390] "203 Actinomyces_sp_S6_Spd3 lypma lypma 1.1367805852"
## [391] "204 Nakamurella_silvestris benzonase benzonase -1.3674675587"
## [392] "205 Oribacterium_asaccharolyticum molysis molysis -1.7359536518"
## [393] "206 Sharpea_azabuensis benzonase benzonase -1.3674675587"
## [394] "207 Actinomyces_sp_oral_taxon_180 benzonase benzonase 0.8667982307"
## [395] "208 Corynebacterium_durum qiaamp qiaamp 1.2849907206"
## [396] "209 Streptococcus_mitis lypma lypma 0.9394406015"
## [397] "210 Cardiobacterium_valvarum qiaamp qiaamp -1.3100853807"
## [398] "211 Collinsella_aerofaciens qiaamp qiaamp 0.7784562296"
## [399] "212 Olsenella_scatoligenes molysis molysis 0.8058744204"
## [400] "213 Prevotella_histicola qiaamp qiaamp -1.8814381989"
## [401] "214 Mogibacterium_diversum qiaamp qiaamp 1.2927937663"
## [402] "215 Actinomyces_sp_oral_taxon_414 qiaamp qiaamp -1.5657710567"
## [403] "216 Actinomyces_sp_oral_taxon_170 host_zero host_zero 0.8200442909"
## [404] "217 Rubrobacter_radiotolerans benzonase benzonase -1.3674675587"
## [405] "218 Staphylococcus_epidermidis molysis molysis -1.4008303040"
## [406] "219 Actinomyces_sp_oral_taxon_181 lypma lypma 1.1634392095"
## [407] "220 Atopobium_parvulum lypma lypma 1.0196115800"
## [408] "221 Lactobacillus_gasseri qiaamp qiaamp -1.2350986454"
## [409] "222 Hydrogenibacillus_schlegelii benzonase benzonase -1.3674675587"
## [410] "223 Lactobacillus_gasseri molysis molysis -1.2286472447"
## [411] "224 Streptococcus_oralis lypma lypma 1.3055973882"
## [412] "225 Atopobium_parvulum benzonase benzonase 1.0072017505"
## [413] "226 Olsenella_scatoligenes host_zero host_zero 0.7748834760"
## [414] "227 Actinomyces_sp_oral_taxon_170 molysis molysis 0.7992141787"
## [415] "228 Rothia_mucilaginosa qiaamp qiaamp 1.0415966890"
## [416] "229 Veillonella_sp_T11011_6 qiaamp qiaamp -1.8043641502"
## [417] "230 Streptococcus_oralis qiaamp qiaamp 1.2910505803"
## [418] "231 Paludisphaera_borealis benzonase benzonase -1.3674675587"
## [419] "232 Actinomyces_sp_HMSC035G02 benzonase benzonase 1.0905834469"
## [420] "233 Alkalilimnicola_ehrlichii host_zero host_zero -1.5089313777"
## [421] "234 Corynebacterium_atypicum host_zero host_zero -1.1886903873"
## [422] "235 Streptococcus_sanguinis benzonase benzonase 1.2403142978"
## [423] "236 Streptococcus_sp_A12 host_zero host_zero 1.1359320500"
## [424] "237 Limnochorda_pilosa qiaamp qiaamp 0.9183832588"
## [425] "238 Abiotrophia_defectiva qiaamp qiaamp 0.9178129630"
## [426] "239 Rothia_mucilaginosa lypma lypma 1.0150236242"
## [427] "240 Veillonella_sp_T11011_6 host_zero host_zero -1.7599175450"
## [428] "241 Brochothrix_campestris qiaamp qiaamp -1.1132131059"
## [429] "242 Actinomyces_sp_oral_taxon_170 lypma lypma -0.7717849654"
## [430] "243 Gemmata_obscuriglobus benzonase benzonase -1.3674675587"
## [431] "244 Actinomyces_hongkongensis benzonase benzonase -1.3674675587"
## [432] "245 Mogibacterium_diversum host_zero host_zero 1.1854997011"
## [433] "246 Cupriavidus_sp lypma lypma 1.2090953687"
## [434] "247 Mogibacterium_diversum molysis molysis 1.1819507654"
## [435] "248 Sharpea_azabuensis molysis molysis -1.2155441264"
## [436] "249 Cupriavidus_sp benzonase benzonase 1.1960954494"
## [437] "250 Staphylococcus_argenteus lypma lypma 1.3029725784"
## [438] "251 Achromobacter_xylosoxidans lypma lypma -0.6323034448"
## [439] "252 Candida_parapsilosis host_zero host_zero -1.5297682409"
## [440] "253 Corynebacterium_durum host_zero host_zero 1.1264614791"
## [441] "254 Gemella_bergeri benzonase benzonase 0.7848428231"
## [442] "255 Tannerella_sp_oral_taxon_HOT_286 qiaamp qiaamp -1.3201692822"
## [443] "256 Parvimonas_micra lypma lypma 1.1301213866"
## [444] "257 Neisseria_subflava qiaamp qiaamp -1.8571682673"
## [445] "258 Cardiobacterium_valvarum host_zero host_zero -1.1368161766"
## [446] "259 Granulicatella_adiacens benzonase benzonase 0.7614819386"
## [447] "260 Scardovia_wiggsiae lypma lypma 0.8086635162"
## [448] "261 Sharpea_azabuensis host_zero host_zero -1.1666697481"
## [449] "262 Gemella_sanguinis qiaamp qiaamp 0.8089208797"
## [450] "263 Collinsella_aerofaciens molysis molysis 0.6765585800"
## [451] "264 Enterorhabdus_caecimuris host_zero host_zero -0.9235960189"
## [452] "265 Actinomyces_sp_oral_taxon_414 benzonase benzonase -1.3674675587"
## [453] "266 Actinomyces_georgiae benzonase benzonase -1.3674675587"
## [454] "267 Streptococcus_oralis host_zero host_zero 1.1653147906"
## [455] "268 Actinomyces_sp_HMSC035G02 lypma lypma 0.9806274054"
## [456] "269 Staphylococcus_argenteus qiaamp qiaamp 1.2485741795"
## [457] "270 Cardiobacterium_hominis qiaamp qiaamp -1.2235264958"
## [458] "271 Actinomyces_sp_oral_taxon_448 molysis molysis -1.3364683873"
## [459] "272 Aeriscardovia_aeriphila host_zero host_zero 0.6233501559"
## [460] "273 Denitrobacterium_detoxificans lypma lypma -0.7717849654"
## [461] "274 Nakamurella_silvestris host_zero host_zero -1.1171638848"
## [462] "275 Neisseria_subflava host_zero host_zero -1.7641599351"
## [463] "276 Streptococcus_salivarius qiaamp qiaamp 1.0445787756"
## [464] "277 Streptococcus_parasanguinis qiaamp qiaamp 0.3816061579"
## [465] "278 Staphylococcus_epidermidis qiaamp qiaamp -1.1608588854"
## [466] "279 Prevotella_melaninogenica host_zero host_zero -1.2610989711"
## [467] "280 Parvimonas_micra host_zero host_zero 1.0399941467"
## [468] "281 Streptococcus_anginosus lypma lypma 0.7806093315"
## [469] "282 Staphylococcus_argenteus host_zero host_zero 1.1693999717"
## [470] "283 Cardiobacterium_hominis molysis molysis -1.1532660505"
## [471] "284 Asaccharobacter_celatus lypma lypma -0.7717849654"
## [472] "285 Aeriscardovia_aeriphila molysis molysis 0.5886953537"
## [473] "286 Oribacterium_sp_oral_taxon_078 qiaamp qiaamp -0.9724961210"
## [474] "287 Gemella_sanguinis benzonase benzonase 0.7366606298"
## [475] "288 Streptococcus_sanguinis qiaamp qiaamp 1.0377771411"
## [476] "289 Streptococcus_sp_A12 molysis molysis 0.9538136252"
## [477] "290 Abiotrophia_defectiva lypma lypma -0.7717849654"
## [478] "291 Granulicatella_adiacens lypma lypma 0.6853643468"
## [479] "292 Limnochorda_pilosa molysis molysis 0.7681133175"
## [480] "293 Thiohalorhabdus_denitrificans host_zero host_zero -1.0602184746"
## [481] "294 Staphylococcus_epidermidis host_zero host_zero -1.1198069500"
## [482] "295 Mogibacterium_diversum benzonase benzonase 1.0138242405"
## [483] "296 Acholeplasma_oculi benzonase benzonase -0.9950401529"
## [484] "297 Gemella_sanguinis lypma lypma 0.7219295321"
## [485] "298 Enterococcus_faecalis benzonase benzonase -1.3674675587"
## [486] "299 Pseudopropionibacterium_propionicum benzonase benzonase 0.8153418700"
## [487] "300 Collinsella_aerofaciens host_zero host_zero 0.6012946775"
## [488] "301 Collinsella_stercoris qiaamp qiaamp 0.6246062839"
## [489] "302 Actinomyces_graevenitzii benzonase benzonase 0.8191950842"
## [490] "303 Rothia_mucilaginosa host_zero host_zero 0.8324584601"
## [491] "304 Neisseria_subflava molysis molysis -1.6199752835"
## [492] "305 Lactobacillus_rhamnosus benzonase benzonase -1.3674675587"
## [493] "306 Rothia_mucilaginosa molysis molysis 0.8229855993"
## [494] "307 Corynebacterium_matruchotii benzonase benzonase -1.3674675587"
## [495] "308 Leptotrichia_wadei molysis molysis -1.3108730312"
## [496] "309 Corynebacterium_durum molysis molysis 0.9359210902"
## [497] "310 Cardiobacterium_hominis host_zero host_zero -1.0561593221"
## [498] "311 Actinomyces_sp_HPA0247 benzonase benzonase 0.7667881025"
## [499] "312 Anaerobiospirillum_thomasii benzonase benzonase -0.9067226893"
## [500] "313 Enterorhabdus_caecimuris lypma lypma -0.7717849654"
## [501] "314 Haemophilus_parainfluenzae lypma lypma -1.1810186236"
## [502] "315 Cardiobacterium_valvarum benzonase benzonase -0.9368547845"
## [503] "316 Streptococcus_pneumoniae molysis molysis 1.5373284799"
## [504] "317 Actinomyces_sp_ICM47 benzonase benzonase 0.9784813934"
## [505] "318 Limnochorda_pilosa host_zero host_zero 0.6987532971"
## [506] "319 Megasphaera_micronuciformis lypma lypma -0.8284672102"
## [507] "320 Actinomyces_sp_oral_taxon_448 qiaamp qiaamp -1.1190789144"
## [508] "321 Rubrobacter_radiotolerans molysis molysis -0.9888824012"
## [509] "322 Streptococcus_peroris host_zero host_zero 1.2528328647"
## [510] "323 Scardovia_wiggsiae benzonase benzonase 0.6513399701"
## [511] "324 Streptococcus_milleri molysis molysis -1.1327826562"
## [512] "325 Enterococcus_faecalis qiaamp qiaamp -1.2229896072"
## [513] "326 X.Collinsella._massiliensis benzonase benzonase 0.4948089227"
## [514] "327 Corynebacterium_matruchotii qiaamp qiaamp -1.2480132213"
## [515] "328 Eubacterium_brachy qiaamp qiaamp 1.0098298779"
## [516] "329 Streptococcus_pseudopneumoniae molysis molysis 1.1189216987"
## [517] "330 Abiotrophia_defectiva host_zero host_zero 0.6696905467"
## [518] "331 Actinomyces_viscosus qiaamp qiaamp 1.1677289511"
## [519] "332 Staphylococcus_aureus host_zero host_zero 1.0551940850"
## [520] "333 Staphylococcus_argenteus benzonase benzonase 0.9830764102"
## [521] "334 Staphylococcus_aureus lypma lypma 1.0409637700"
## [522] "335 Staphylococcus_aureus molysis molysis 1.0408686695"
## [523] "336 Stenotrophomonas_pavanii lypma lypma -1.2968874151"
## [524] "337 Stenotrophomonas_rhizophila host_zero host_zero -1.5097808962"
## [525] "338 Hydrogenibacillus_schlegelii qiaamp qiaamp -0.9326929746"
## [526] "339 Eubacterium_nodatum molysis molysis -1.2527821181"
## [527] "340 Solobacterium_moorei lypma lypma 0.7999507527"
## [528] "341 Streptococcus_peroris benzonase benzonase 1.1699394834"
## [529] "342 Rothia_mucilaginosa benzonase benzonase 0.7063714174"
## [530] "343 Slackia_isoflavoniconvertens host_zero host_zero 0.6457724692"
## [531] "344 Hydrogenibacillus_schlegelii host_zero host_zero -0.9177256959"
## [532] "345 Streptococcus_sanguinis host_zero host_zero 0.8558003153"
## [533] "346 Lachnoanaerobaculum_saburreum benzonase benzonase 1.1546701385"
## [534] "347 Oribacterium_sinus lypma lypma 1.0088855541"
## [535] "348 Peptostreptococcus_stomatis qiaamp qiaamp 0.8972392623"
## [536] "349 Candida_parapsilosis molysis molysis -1.1187159775"
## [537] "350 Streptococcus_peroris molysis molysis 1.1498943408"
## [538] "351 Brochothrix_campestris lypma lypma -0.7717849654"
## [539] "352 Streptococcus_parasanguinis benzonase benzonase 0.3018815661"
## [540] "353 Enterococcus_faecalis host_zero host_zero -1.1369017243"
## [541] "354 Veillonella_parvula qiaamp qiaamp -1.0203274141"
## [542] "355 Stenotrophomonas_pavanii qiaamp qiaamp -1.2468377654"
## [543] "356 Lactobacillus_gasseri benzonase benzonase -0.8156761226"
## [544] "357 Streptococcus_salivarius molysis molysis 0.8082924385"
## [545] "358 Staphylococcus_aureus qiaamp qiaamp 0.9892815414"
## [546] "359 Streptococcus_sp_HPH0090 molysis molysis 0.9276425417"
## [547] "360 Atopobium_deltae lypma lypma -0.7717849654"
## [548] "361 Abiotrophia_sp_HMSC24B09 lypma lypma -0.7717849654"
## [549] "362 Oribacterium_sp_oral_taxon_078 lypma lypma -0.7717849654"
## [550] "363 Actinomyces_sp_oral_taxon_448 host_zero host_zero -0.9949026355"
## [551] "364 Collinsella_stercoris benzonase benzonase -0.5114021126"
## [552] "365 Bulleidia_extructa qiaamp qiaamp 0.5881192768"
## [553] "366 Kouleothrix_aurantiaca host_zero host_zero -0.8381451290"
## [554] "367 Rothia_aeria molysis molysis 0.9645859905"
## [555] "368 Gemella_sanguinis host_zero host_zero 0.5786582642"
## [556] "369 Streptococcus_salivarius benzonase benzonase 0.7884348557"
## [557] "370 Mogibacterium_pumilum lypma lypma -0.7717849654"
## [558] "371 Anaerobiospirillum_thomasii lypma lypma -0.7717849654"
## [559] "372 Actinomyces_johnsonii qiaamp qiaamp 1.2101892663"
## [560] "373 Lachnoanaerobaculum_saburreum molysis molysis 1.1024669025"
## [561] "374 Neisseria_flavescens qiaamp qiaamp -1.3013897672"
## [562] "375 Streptococcus_salivarius host_zero host_zero 0.7823745310"
## [563] "376 Candida_parapsilosis qiaamp qiaamp -1.0654705541"
## [564] "377 Oribacterium_sinus qiaamp qiaamp 0.9522883967"
## [565] "378 Alkalilimnicola_ehrlichii qiaamp qiaamp -0.9774552623"
## [566] "379 Corynebacterium_atypicum lypma lypma -0.7717849654"
## [567] "380 Rothia_aeria host_zero host_zero 0.9460598742"
## [568] "381 Streptococcus_sp_HMSC034E03 molysis molysis 0.8343511273"
## [569] "382 Eubacterium_brachy molysis molysis 0.8904061800"
## [570] "383 Acholeplasma_oculi lypma lypma -0.7717849654"
## [571] "384 Actinomyces_naeslundii lypma lypma -0.7717849654"
## [572] "385 Actinomyces_odontolyticus benzonase benzonase 0.7255421287"
## [573] "386 Denitrobacterium_detoxificans host_zero host_zero -0.5511769946"
## [574] "387 Gemmata_obscuriglobus qiaamp qiaamp -0.8821665899"
## [575] "388 Oribacterium_parvum benzonase benzonase -0.6752010975"
## [576] "389 Hydrogenibacillus_schlegelii molysis molysis -0.8277584518"
## [577] "390 Cutibacterium_acnes lypma lypma -0.7717849654"
## [578] "391 Actinomyces_massiliensis molysis molysis 0.9923392450"
## [579] "392 Aeriscardovia_aeriphila benzonase benzonase 0.4288853583"
## [580] "393 Pseudomonas_aeruginosa lypma lypma -0.4487450364"
## [581] "394 Nakamurella_silvestris lypma lypma -0.7717849654"
## [582] "395 Eubacterium_infirmum lypma lypma -0.7717849654"
## [583] "396 Sharpea_azabuensis lypma lypma -0.7717849654"
## [584] "397 Streptococcus_pseudopneumoniae host_zero host_zero 0.9380740526"
## [585] "398 Mogibacterium_diversum lypma lypma -0.7474257263"
## [586] "399 Kouleothrix_aurantiaca lypma lypma -0.7717849654"
## [587] "400 Porphyromonas_endodontalis host_zero host_zero 0.8001916457"
## [588] "401 Thiohalorhabdus_denitrificans qiaamp qiaamp -0.7751106737"
## [589] "402 Propionibacterium_acidifaciens benzonase benzonase -1.0118173936"
## [590] "403 Limnochorda_pilosa benzonase benzonase 0.5588062113"
## [591] "404 Streptococcus_sobrinus molysis molysis -1.2198765297"
## [592] "405 Actinomyces_odontolyticus lypma lypma 0.6826844778"
## [593] "406 Bifidobacterium_dentium benzonase benzonase -0.8434138779"
## [594] "407 Gemella_sanguinis molysis molysis 0.5200623140"
## [595] "408 Streptococcus_sp_HMSC067H01 qiaamp qiaamp -0.7560556997"
## [596] "409 Enorma_massiliensis lypma lypma -0.4576947323"
## [597] "410 Rubrobacter_radiotolerans lypma lypma -0.7717849654"
## [598] "411 Streptococcus_pneumoniae qiaamp qiaamp -1.1812562302"
## [599] "412 Cardiobacterium_hominis benzonase benzonase -0.7923134670"
## [600] "413 Prevotella_salivae host_zero host_zero -0.8251143342"
## [601] "414 Oribacterium_asaccharolyticum host_zero host_zero -0.9273624485"
## [602] "415 Hydrogenibacillus_schlegelii lypma lypma -0.7717849654"
## [603] "416 Bulleidia_extructa host_zero host_zero 0.5104620395"
## [604] "417 Gemmata_obscuriglobus host_zero host_zero -0.8147108636"
## [605] "418 Veillonella_atypica molysis molysis -0.8899226444"
## [606] "419 Asaccharobacter_celatus host_zero host_zero -0.5215796932"
## [607] "420 Stenotrophomonas_pavanii host_zero host_zero -1.0472542526"
## [608] "421 Slackia_isoflavoniconvertens molysis molysis 0.5364817985"
## [609] "422 Fusobacterium_nucleatum host_zero host_zero -0.9515705916"
## [610] "423 Neisseria_flavescens lypma lypma 1.1289045773"
## [611] "424 Abiotrophia_defectiva molysis molysis 0.5258491024"
## [612] "425 Bifidobacterium_dentium qiaamp qiaamp -0.7995222280"
## [613] "426 Abiotrophia_sp_HMSC24B09 host_zero host_zero 0.6507907499"
## [614] "427 Streptococcus_mitis benzonase benzonase 0.4952299197"
## [615] "428 Fusobacterium_nucleatum qiaamp qiaamp -0.9403018444"
## [616] "429 Oribacterium_sinus benzonase benzonase 0.8222912010"
## [617] "430 Streptococcus_sp_HPH0090 benzonase benzonase 0.7714330519"
## [618] "431 Collinsella_stercoris molysis molysis 0.4267931831"
## [619] "432 Streptococcus_peroris lypma lypma 0.9349037498"
## [620] "433 Mogibacterium_timidum lypma lypma -0.7717849654"
## [621] "434 Actinomyces_graevenitzii lypma lypma 0.5586680549"
## [622] "435 Streptococcus_vestibularis qiaamp qiaamp 0.7949181225"
## [623] "436 Prevotella_pallens lypma lypma -0.7455490171"
## [624] "437 Neisseria_flavescens benzonase benzonase 1.0935947225"
## [625] "438 Staphylococcus_epidermidis benzonase benzonase -0.7419896644"
## [626] "439 Gemmata_obscuriglobus lypma lypma -0.7717849654"
## [627] "440 Actinomyces_hongkongensis lypma lypma -0.7717849654"
## [628] "441 Stenotrophomonas_maltophilia qiaamp qiaamp -0.8199368159"
## [629] "442 Eggerthia_catenaformis host_zero host_zero -0.9030857843"
## [630] "443 Streptococcus_sp_HMSC071D03 benzonase benzonase -0.8387336769"
## [631] "444 Enorma_massiliensis qiaamp qiaamp 0.4159970105"
## [632] "445 Actinomyces_viscosus molysis molysis 0.8581664234"
## [633] "446 Actinomyces_johnsonii host_zero host_zero 0.9713385967"
## [634] "447 Veillonella_parvula benzonase benzonase 0.7900555676"
## [635] "448 Mogibacterium_timidum benzonase benzonase -0.7279702240"
## [636] "449 Prevotella_salivae lypma lypma -0.7411094653"
## [637] "450 Staphylococcus_aureus benzonase benzonase 0.7643889846"
## [638] "451 Actinomyces_hongkongensis qiaamp qiaamp -0.7344036233"
## [639] "452 Actinomyces_sp_oral_taxon_414 lypma lypma -0.7717849654"
## [640] "453 Collinsella_stercoris host_zero host_zero 0.3938173781"
## [641] "454 Actinomyces_georgiae lypma lypma -0.7717849654"
## [642] "455 Porphyromonas_endodontalis qiaamp qiaamp -0.6723451730"
## [643] "456 Porphyromonas_somerae lypma lypma 0.9714027405"
## [644] "457 Streptococcus_mitis molysis molysis 0.4447788829"
## [645] "458 Abiotrophia_sp_HMSC24B09 molysis molysis 0.5802551232"
## [646] "459 Streptococcus_sobrinus host_zero host_zero -1.0166005179"
## [647] "460 Lachnoanaerobaculum_saburreum lypma lypma 0.8392502132"
## [648] "461 Acholeplasma_oculi host_zero host_zero -0.6023519019"
## [649] "462 Olsenella_uli benzonase benzonase -0.8139178355"
## [650] "463 Oribacterium_asaccharolyticum qiaamp qiaamp -0.7961723915"
## [651] "464 Capnocytophaga_gingivalis benzonase benzonase -0.8269361856"
## [652] "465 Actinomyces_johnsonii molysis molysis 0.9132768004"
## [653] "466 Eubacterium_sulci lypma lypma -0.6585323502"
## [654] "467 Slackia_isoflavoniconvertens qiaamp qiaamp 0.4657386626"
## [655] "468 Prevotella_histicola host_zero host_zero -0.8776494212"
## [656] "469 Streptococcus_sp_HMSC071D03 qiaamp qiaamp -0.7585775684"
## [657] "470 Parvimonas_sp_oral_taxon_110 molysis molysis -0.7969254142"
## [658] "471 Oribacterium_asaccharolyticum lypma lypma -0.7717849654"
## [659] "472 Stenotrophomonas_rhizophila qiaamp qiaamp -1.0342384095"
## [660] "473 Alloscardovia_omnicolens lypma lypma -0.7717849654"
## [661] "474 Actinomyces_sp_oral_taxon_448 benzonase benzonase -0.7162699909"
## [662] "475 Actinomyces_massiliensis lypma lypma -0.7717849654"
## [663] "476 Streptococcus_sp_HMSC067H01 molysis molysis 0.6148178537"
## [664] "477 Streptococcus_sp_HPH0090 qiaamp qiaamp 0.6595463860"
## [665] "478 Bulleidia_extructa molysis molysis 0.4228363097"
## [666] "479 Neisseria_flavescens molysis molysis -0.9466118765"
## [667] "480 Staphylococcus_schweitzeri qiaamp qiaamp 0.9507243553"
## [668] "481 Rothia_aeria benzonase benzonase -0.6902582283"
## [669] "482 Mogibacterium_timidum host_zero host_zero -0.6548393123"
## [670] "483 Streptococcus_sp_A12 lypma lypma 0.5354698703"
## [671] "484 Enterococcus_faecalis lypma lypma -0.7717849654"
## [672] "485 Propionibacterium_acidifaciens lypma lypma -0.7717849654"
## [673] "486 Veillonella_dispar molysis molysis -0.5354462274"
## [674] "487 Bifidobacterium_dentium host_zero host_zero -0.6444468222"
## [675] "488 Collinsella_intestinalis molysis molysis 0.3041910420"
## [676] "489 Collinsella_intestinalis qiaamp qiaamp 0.3033849640"
## [677] "490 Streptococcus_peroris qiaamp qiaamp 0.7656481674"
## [678] "491 Eubacterium_nodatum host_zero host_zero -0.8176417587"
## [679] "492 Oribacterium_sinus host_zero host_zero 0.6688224028"
## [680] "493 Veillonella_atypica lypma lypma -0.7113399375"
## [681] "494 Stenotrophomonas_maltophilia host_zero host_zero -0.6942239660"
## [682] "495 Lactobacillus_rhamnosus lypma lypma -0.7717849654"
## [683] "496 Stomatobaculum_longum benzonase benzonase 0.6655987547"
## [684] "497 Stomatobaculum_longum molysis molysis -0.6646587382"
## [685] "498 Actinomyces_sp_oral_taxon_180 lypma lypma -0.3682486202"
## [686] "499 Alkalilimnicola_ehrlichii lypma lypma -0.6746476509"
## [687] "500 Eubacterium_brachy host_zero host_zero 0.6185479775"
## [688] "501 Streptococcus_sp_HPH0090 host_zero host_zero 0.6140863206"
## [689] "502 Collinsella_stercoris lypma lypma -0.3393823318"
## [690] "503 Streptococcus_parasanguinis molysis molysis 0.1958226741"
## [691] "504 X.Collinsella._massiliensis lypma lypma -0.2972473192"
## [692] "505 Megasphaera_micronuciformis benzonase benzonase -0.4769711152"
## [693] "506 Eubacterium_nodatum lypma lypma -0.7717849654"
## [694] "507 Streptococcus_sp_M334 lypma lypma 0.7553620252"
## [695] "508 Actinomyces_georgiae qiaamp qiaamp -0.6461978947"
## [696] "509 Actinomyces_hongkongensis host_zero host_zero -0.6064901398"
## [697] "510 Actinomyces_sp_oral_taxon_897 host_zero host_zero -0.8618885210"
## [698] "511 Eubacterium_infirmum benzonase benzonase -0.5411453983"
## [699] "512 Leptotrichia_wadei benzonase benzonase -0.6959702804"
## [700] "513 Peptostreptococcus_stomatis host_zero host_zero 0.5516933963"
## [701] "514 Actinomyces_sp_ICM47 lypma lypma 0.5409407731"
## [702] "515 Bifidobacterium_longum lypma lypma -0.7717849654"
## [703] "516 Stenotrophomonas_pavanii benzonase benzonase -0.7702740839"
## [704] "517 Streptococcus_salivarius lypma lypma 0.4988141443"
## [705] "518 Actinomyces_meyeri lypma lypma -0.4497073722"
## [706] "519 Abiotrophia_defectiva benzonase benzonase -0.3848388713"
## [707] "520 Streptococcus_sp_HMSC034E03 qiaamp qiaamp -0.5352549845"
## [708] "521 Streptococcus_sp_A12 benzonase benzonase 0.4651968851"
## [709] "522 Bifidobacterium_longum host_zero host_zero -0.7484599775"
## [710] "523 Limnochorda_pilosa lypma lypma -0.3748113246"
## [711] "524 Eubacterium_brachy lypma lypma 0.5549629644"
## [712] "525 Staphylococcus_argenteus molysis molysis 0.5509121450"
## [713] "526 Actinomyces_sp_oral_taxon_414 host_zero host_zero -0.5942990852"
## [714] "527 Streptococcus_milleri qiaamp qiaamp -0.6068114858"
## [715] "528 Kouleothrix_aurantiaca benzonase benzonase -0.4979451522"
## [716] "529 Lactobacillus_rhamnosus qiaamp qiaamp -0.6651578176"
## [717] "530 Sutterella_parvirubra lypma lypma 0.4097401221"
## [718] "531 Streptococcus_sobrinus benzonase benzonase -0.7864349400"
## [719] "532 Alloscardovia_omnicolens qiaamp qiaamp 0.6182578152"
## [720] "533 Collinsella_intestinalis host_zero host_zero 0.2560618801"
## [721] "534 Sutterella_parvirubra benzonase benzonase 0.4059549180"
## [722] "535 Porphyromonas_somerae host_zero host_zero 0.7328431632"
## [723] "536 Actinomyces_sp_oral_taxon_897 lypma lypma -0.7717849654"
## [724] "537 Streptococcus_sobrinus lypma lypma -0.7717849654"
## [725] "538 Streptococcus_vestibularis molysis molysis 0.5470863055"
## [726] "539 Streptococcus_parasanguinis host_zero host_zero 0.1677594956"
## [727] "540 Eubacterium_infirmum molysis molysis 0.4789344579"
## [728] "541 Atopobium_rimae lypma lypma 0.4163025768"
## [729] "542 Actinomyces_meyeri benzonase benzonase -0.4068309954"
## [730] "543 Abiotrophia_sp_HMSC24B09 qiaamp qiaamp 0.4316393949"
## [731] "544 Brochothrix_campestris molysis molysis -0.4191078719"
## [732] "545 Streptococcus_sp_HMSC067H01 host_zero host_zero -0.4724114128"
## [733] "546 Tannerella_sp_oral_taxon_HOT_286 host_zero host_zero -0.5187570921"
## [734] "547 Stenotrophomonas_rhizophila lypma lypma -0.7877587295"
## [735] "548 Slackia_isoflavoniconvertens lypma lypma -0.3446126679"
## [736] "549 Streptococcus_sp_HMSC034E03 lypma lypma 0.4690961360"
## [737] "550 Pseudopropionibacterium_propionicum lypma lypma 0.3608344982"
## [738] "551 Propionibacterium_acidifaciens molysis molysis -0.6018339267"
## [739] "552 Olsenella_profusa benzonase benzonase -0.4994366980"
## [740] "553 Mogibacterium_timidum qiaamp qiaamp -0.4969169434"
## [741] "554 Actinomyces_sp_HPA0247 lypma lypma 0.3514835011"
## [742] "555 Mogibacterium_pumilum qiaamp qiaamp 0.4162436122"
## [743] "556 Collinsella_intestinalis benzonase benzonase -0.2349239799"
## [744] "557 Aeriscardovia_aeriphila lypma lypma 0.2461649061"
## [745] "558 Denitrobacterium_detoxificans qiaamp qiaamp -0.3076842121"
## [746] "559 Sutterella_parvirubra host_zero host_zero -0.3696247110"
## [747] "560 Actinomyces_sp_oral_taxon_897 benzonase benzonase -0.7014143425"
## [748] "561 Eggerthia_catenaformis qiaamp qiaamp -0.5834206127"
## [749] "562 Streptococcus_pseudopneumoniae qiaamp qiaamp 0.5336555503"
## [750] "563 Actinomyces_massiliensis host_zero host_zero 0.5573959541"
## [751] "564 Actinobaculum_sp_oral_taxon_183 lypma lypma -0.7717849654"
## [752] "565 Olsenella_scatoligenes benzonase benzonase 0.2617424425"
## [753] "566 Prevotella_jejuni host_zero host_zero -0.5548909787"
## [754] "567 Actinomyces_sp_oral_taxon_897 molysis molysis -0.6863389329"
## [755] "568 Eubacterium_brachy benzonase benzonase 0.4684983225"
## [756] "569 Actinomyces_georgiae host_zero host_zero -0.5078442866"
## [757] "570 Stomatobaculum_longum lypma lypma 0.4943991913"
## [758] "571 Olsenella_profusa molysis molysis 0.4593026253"
## [759] "572 Olsenella_uli qiaamp qiaamp 0.5412958171"
## [760] "573 Veillonella_sp_T11011_6 molysis molysis -0.5907666262"
## [761] "574 Fusobacterium_nucleatum molysis molysis 0.5531835113"
## [762] "575 Parvimonas_sp_oral_taxon_110 benzonase benzonase -0.5436102003"
## [763] "576 Prevotella_melaninogenica lypma lypma -0.4833117203"
## [764] "577 Eubacterium_nodatum qiaamp qiaamp -0.5885459149"
## [765] "578 Abiotrophia_sp_HMSC24B09 benzonase benzonase -0.3772698867"
## [766] "579 Streptococcus_vestibularis benzonase benzonase -0.4712790204"
## [767] "580 Lachnoanaerobaculum_saburreum qiaamp qiaamp 0.5499504935"
## [768] "581 Streptococcus_sp_HMSC034E03 host_zero host_zero -0.4206747794"
## [769] "582 Streptococcus_mutans molysis molysis 0.5510324946"
## [770] "583 Bulleidia_extructa lypma lypma 0.2787375147"
## [771] "584 Streptococcus_vestibularis lypma lypma 0.4511913121"
## [772] "585 Veillonella_parvula host_zero host_zero -0.4671361952"
## [773] "586 Streptococcus_pseudopneumoniae benzonase benzonase 0.4785193058"
## [774] "587 Actinomyces_johnsonii benzonase benzonase 0.5716762139"
## [775] "588 Enorma_massiliensis molysis molysis 0.2405399915"
## [776] "589 Actinomyces_viscosus lypma lypma -0.4948039890"
## [777] "590 Porphyromonas_endodontalis lypma lypma 0.4032744077"
## [778] "591 Streptococcus_pseudopneumoniae lypma lypma 0.4693401811"
## [779] "592 Bulleidia_extructa benzonase benzonase 0.2662062175"
## [780] "593 Bifidobacterium_dentium lypma lypma -0.4211666812"
## [781] "594 Collinsella_aerofaciens benzonase benzonase 0.2217519153"
## [782] "595 Actinomyces_sp_oral_taxon_897 qiaamp qiaamp -0.5971602971"
## [783] "596 Peptostreptococcus_stomatis benzonase benzonase -0.3860375667"
## [784] "597 Neisseria_flavescens host_zero host_zero -0.5868194533"
## [785] "598 Actinomyces_meyeri host_zero host_zero 0.3190388053"
## [786] "599 Porphyromonas_somerae benzonase benzonase 0.5635650238"
## [787] "600 Streptococcus_mutans lypma lypma 0.4893341147"
## [788] "601 Candida_parapsilosis benzonase benzonase -0.4672697413"
## [789] "602 Veillonella_infantium lypma lypma 0.3994179805"
## [790] "603 Mogibacterium_pumilum molysis molysis 0.3320359283"
## [791] "604 Alloscardovia_omnicolens host_zero host_zero 0.4510077055"
## [792] "605 Rothia_aeria qiaamp qiaamp 0.4036991609"
## [793] "606 Streptococcus_milleri host_zero host_zero -0.4202924986"
## [794] "607 Gemella_bergeri lypma lypma -0.2302886175"
## [795] "608 Bifidobacterium_longum qiaamp qiaamp -0.4891949043"
## [796] "609 Olsenella_scatoligenes lypma lypma -0.2031293970"
## [797] "610 Streptococcus_milleri lypma lypma 0.4088489952"
## [798] "611 Streptococcus_sp_HPH0090 lypma lypma 0.3662754404"
## [799] "612 Parvimonas_sp_oral_taxon_110 qiaamp qiaamp -0.4344599428"
## [800] "613 Parvimonas_sp_oral_taxon_393 lypma lypma -0.2703239117"
## [801] "614 Paludisphaera_borealis qiaamp qiaamp -0.3499807870"
## [802] "615 Streptococcus_sobrinus qiaamp qiaamp -0.5185945409"
## [803] "616 Peptostreptococcus_stomatis lypma lypma -0.3335479304"
## [804] "617 Lactobacillus_rhamnosus molysis molysis -0.4315487555"
## [805] "618 Fusobacterium_nucleatum lypma lypma -0.4226679145"
## [806] "619 Capnocytophaga_gingivalis host_zero host_zero 0.4200188099"
## [807] "620 Streptococcus_sp_HMSC034E03 benzonase benzonase 0.3229808886"
## [808] "621 Olsenella_uli molysis molysis 0.4064085068"
## [809] "622 Olsenella_uli host_zero host_zero 0.4038275255"
## [810] "623 Mogibacterium_timidum molysis molysis -0.3441713965"
## [811] "624 Prevotella_jejuni lypma lypma -0.4010485547"
## [812] "625 Enorma_massiliensis host_zero host_zero 0.1915570615"
## [813] "626 Lactobacillus_rhamnosus host_zero host_zero -0.4143459030"
## [814] "627 Slackia_isoflavoniconvertens benzonase benzonase -0.2290013120"
## [815] "628 Oribacterium_asaccharolyticum benzonase benzonase -0.3874749286"
## [816] "629 Actinomyces_meyeri molysis molysis 0.2596520435"
## [817] "630 Veillonella_parvula molysis molysis 0.3600152035"
## [818] "631 Paludisphaera_borealis lypma lypma -0.3253502794"
## [819] "632 Haemophilus_parainfluenzae benzonase benzonase -0.3712431721"
## [820] "633 Streptococcus_cristatus molysis molysis 0.4238325122"
## [821] "634 Corynebacterium_matruchotii lypma lypma -0.4051473802"
## [822] "635 Eubacterium_sulci benzonase benzonase 0.3161809189"
## [823] "636 Alloscardovia_omnicolens molysis molysis 0.3779063605"
## [824] "637 Tannerella_sp_oral_taxon_HOT_286 lypma lypma 0.3333274178"
## [825] "638 Denitrobacterium_detoxificans molysis molysis -0.2059217103"
## [826] "639 Enterorhabdus_caecimuris molysis molysis -0.2352295973"
## [827] "640 Streptococcus_sp_HMSC071D03 molysis molysis 0.3657306969"
## [828] "641 Oribacterium_parvum lypma lypma -0.2534481023"
## [829] "642 Thermoleophilum_album molysis molysis 0.2561446657"
## [830] "643 Slackia_exigua lypma lypma -0.1981451787"
## [831] "644 Oribacterium_sp_oral_taxon_078 host_zero host_zero -0.2569447899"
## [832] "645 Corynebacterium_durum lypma lypma -0.2658835520"
## [833] "646 Neisseria_subflava benzonase benzonase 0.4407102745"
## [834] "647 Corynebacterium_matruchotii host_zero host_zero -0.3738691591"
## [835] "648 Streptococcus_sp_HMSC071D03 host_zero host_zero -0.3378823316"
## [836] "649 Tannerella_sp_oral_taxon_HOT_286 benzonase benzonase -0.3028803910"
## [837] "650 Streptococcus_sp_M334 host_zero host_zero -0.3728337815"
## [838] "651 Olsenella_profusa qiaamp qiaamp 0.2889307143"
## [839] "652 Actinomyces_sp_oral_taxon_448 lypma lypma -0.3073082112"
## [840] "653 Parvimonas_sp_oral_taxon_110 lypma lypma -0.3403999284"
## [841] "654 Anaerobiospirillum_thomasii molysis molysis 0.2442365084"
## [842] "655 Capnocytophaga_gingivalis qiaamp qiaamp 0.3437786100"
## [843] "656 Cardiobacterium_valvarum lypma lypma -0.2490246091"
## [844] "657 Eubacterium_infirmum qiaamp qiaamp 0.2565767755"
## [845] "658 Acholeplasma_oculi molysis molysis -0.2438635119"
## [846] "659 Collinsella_aerofaciens lypma lypma 0.1494947153"
## [847] "660 Actinomyces_massiliensis qiaamp qiaamp 0.3153020803"
## [848] "661 Corynebacterium_durum benzonase benzonase -0.2326810630"
## [849] "662 Fusobacterium_nucleatum benzonase benzonase 0.3203171185"
## [850] "663 Stenotrophomonas_maltophilia benzonase benzonase 0.2901886894"
## [851] "664 Paludisphaera_borealis molysis molysis 0.2552643558"
## [852] "665 Prevotella_pallens benzonase benzonase 0.2543002269"
## [853] "666 Eubacterium_sulci qiaamp qiaamp 0.2456082035"
## [854] "667 Streptococcus_sp_HMSC067H01 benzonase benzonase -0.2332117531"
## [855] "668 Alloscardovia_omnicolens benzonase benzonase 0.2896396020"
## [856] "669 Lactobacillus_gasseri lypma lypma -0.2167670932"
## [857] "670 Streptococcus_mutans benzonase benzonase 0.3039577407"
## [858] "671 Streptococcus_sp_M334 benzonase benzonase -0.3112615261"
## [859] "672 Streptococcus_mitis host_zero host_zero 0.1546553426"
## [860] "673 Cutibacterium_acnes qiaamp qiaamp -0.2186869662"
## [861] "674 Actinomyces_georgiae molysis molysis 0.2594988791"
## [862] "675 Streptococcus_mutans qiaamp qiaamp 0.2928363576"
## [863] "676 Cutibacterium_acnes molysis molysis 0.2130375221"
## [864] "677 Gemmata_obscuriglobus molysis molysis 0.2401637827"
## [865] "678 Eggerthia_catenaformis lypma lypma -0.2860806471"
## [866] "679 Eggerthia_catenaformis benzonase benzonase -0.2835510747"
## [867] "680 Anaerobiospirillum_thomasii host_zero host_zero -0.1979590292"
## [868] "681 Staphylococcus_schweitzeri host_zero host_zero 0.3340790271"
## [869] "682 Actinomyces_meyeri qiaamp qiaamp -0.1786720314"
## [870] "683 Mogibacterium_pumilum host_zero host_zero 0.1936900409"
## [871] "684 Veillonella_sp_T11011_6 lypma lypma -0.2949154807"
## [872] "685 Kouleothrix_aurantiaca molysis molysis -0.2043531498"
## [873] "686 Thiohalorhabdus_denitrificans lypma lypma -0.2056626992"
## [874] "687 Porphyromonas_endodontalis benzonase benzonase -0.2111395469"
## [875] "688 Streptococcus_cristatus host_zero host_zero 0.2837818511"
## [876] "689 Propionibacterium_acidifaciens qiaamp qiaamp -0.2636709753"
## [877] "690 Streptococcus_mitis qiaamp qiaamp 0.1375400308"
## [878] "691 Propionibacterium_acidifaciens host_zero host_zero -0.2576293405"
## [879] "692 Leptotrichia_wadei lypma lypma 0.2527345514"
## [880] "693 Bifidobacterium_dentium molysis molysis -0.2163454942"
## [881] "694 Bifidobacterium_longum benzonase benzonase -0.2796158685"
## [882] "695 Streptococcus_sp_M334 molysis molysis 0.2550920804"
## [883] "696 Prevotella_melaninogenica benzonase benzonase -0.2109438585"
## [884] "697 Prevotella_histicola benzonase benzonase -0.2539295862"
## [885] "698 Veillonella_dispar benzonase benzonase -0.1604582582"
## [886] "699 Olsenella_profusa lypma lypma -0.1874459096"
## [887] "700 Oribacterium_sinus molysis molysis 0.1974670580"
## [888] "701 Corynebacterium_matruchotii molysis molysis 0.2250488914"
## [889] "702 Actinomyces_johnsonii lypma lypma -0.2304686171"
## [890] "703 Actinomyces_sp_oral_taxon_414 molysis molysis -0.1868013638"
## [891] "704 Thermoleophilum_album host_zero host_zero -0.1376624294"
## [892] "705 Parvimonas_sp_oral_taxon_393 molysis molysis 0.1289939668"
## [893] "706 Olsenella_profusa host_zero host_zero 0.1692289692"
## [894] "707 Thermoleophilum_album benzonase benzonase -0.1347384700"
## [895] "708 Staphylococcus_epidermidis lypma lypma -0.1654836884"
## [896] "709 Eubacterium_sulci host_zero host_zero 0.1619537820"
## [897] "710 Cardiobacterium_hominis lypma lypma -0.1652546171"
## [898] "711 Staphylococcus_schweitzeri lypma lypma -0.2376460215"
## [899] "712 Neisseria_subflava lypma lypma -0.2365445682"
## [900] "713 Actinomyces_naeslundii benzonase benzonase -0.1392630582"
## [901] "714 Parvimonas_sp_oral_taxon_110 host_zero host_zero -0.1897035538"
## [902] "715 Streptococcus_sp_HMSC071D03 lypma lypma -0.1736866107"
## [903] "716 Actinomyces_massiliensis benzonase benzonase 0.1780968661"
## [904] "717 Parvimonas_sp_oral_taxon_393 qiaamp qiaamp 0.1114976529"
## [905] "718 Streptococcus_vestibularis host_zero host_zero 0.1518186206"
## [906] "719 Asaccharobacter_celatus molysis molysis -0.0933990326"
## [907] "720 Staphylococcus_schweitzeri molysis molysis 0.2045532060"
## [908] "721 Prevotella_histicola lypma lypma 0.1797920403"
## [909] "722 Actinomyces_hongkongensis molysis molysis 0.1364594440"
## [910] "723 Slackia_exigua benzonase benzonase 0.0823812026"
## [911] "724 Streptococcus_milleri benzonase benzonase -0.1428484494"
## [912] "725 Actinomyces_viscosus benzonase benzonase 0.1425123297"
## [913] "726 Eubacterium_nodatum benzonase benzonase -0.1556007701"
## [914] "727 Rothia_aeria lypma lypma -0.1245672590"
## [915] "728 Sutterella_parvirubra molysis molysis -0.0876861845"
## [916] "729 Actinomyces_viscosus host_zero host_zero 0.1337091180"
## [917] "730 Staphylococcus_schweitzeri benzonase benzonase 0.1597698572"
## [918] "731 Veillonella_infantium benzonase benzonase -0.1100743960"
## [919] "732 Veillonella_atypica benzonase benzonase -0.1184381792"
## [920] "733 Paludisphaera_borealis host_zero host_zero -0.1035897675"
## [921] "734 Streptococcus_sp_M334 qiaamp qiaamp -0.1301115721"
## [922] "735 Capnocytophaga_gingivalis lypma lypma -0.1219244156"
## [923] "736 Actinobaculum_sp_oral_taxon_183 benzonase benzonase -0.1515233068"
## [924] "737 Streptococcus_cristatus qiaamp qiaamp 0.1205292464"
## [925] "738 Veillonella_parvula lypma lypma 0.1020631335"
## [926] "739 Bifidobacterium_longum molysis molysis -0.1183524650"
## [927] "740 Veillonella_sp_T11011_6 benzonase benzonase -0.1140295817"
## [928] "741 Porphyromonas_somerae qiaamp qiaamp 0.1202523015"
## [929] "742 Olsenella_uli lypma lypma -0.0986866884"
## [930] "743 Actinobaculum_sp_oral_taxon_183 host_zero host_zero -0.1245339029"
## [931] "744 Actinobaculum_sp_oral_taxon_183 qiaamp qiaamp 0.1223744181"
## [932] "745 Collinsella_intestinalis lypma lypma -0.0365303143"
## [933] "746 Streptococcus_cristatus benzonase benzonase -0.0982143359"
## [934] "747 Stenotrophomonas_rhizophila benzonase benzonase -0.1108691225"
## [935] "748 Prevotella_salivae benzonase benzonase -0.0718693932"
## [936] "749 Cutibacterium_acnes host_zero host_zero -0.0615088818"
## [937] "750 Peptostreptococcus_stomatis molysis molysis 0.0628308852"
## [938] "751 Thiohalorhabdus_denitrificans benzonase benzonase 0.0529007137"
## [939] "752 Streptococcus_sp_HMSC067H01 lypma lypma -0.0513749532"
## [940] "753 Eubacterium_sulci molysis molysis -0.0540649599"
## [941] "754 Parvimonas_sp_oral_taxon_393 host_zero host_zero -0.0410001279"
## [942] "755 Oribacterium_sp_oral_taxon_078 molysis molysis -0.0422986209"
## [943] "756 Acholeplasma_oculi qiaamp qiaamp -0.0415744600"
## [944] "757 Porphyromonas_somerae molysis molysis 0.0644844800"
## [945] "758 Actinobaculum_sp_oral_taxon_183 molysis molysis 0.0717455561"
## [946] "759 Thermoleophilum_album lypma lypma -0.0305568236"
## [947] "760 Alkalilimnicola_ehrlichii benzonase benzonase -0.0417978167"
## [948] "761 Eubacterium_infirmum host_zero host_zero -0.0305990772"
## [949] "762 Veillonella_dispar lypma lypma 0.0231762605"
## [950] "763 Candida_parapsilosis lypma lypma -0.0323668773"
## [951] "764 Streptococcus_mutans host_zero host_zero -0.0306442605"
## [952] "765 Mogibacterium_pumilum benzonase benzonase 0.0203905082"
## [953] "766 Streptococcus_cristatus lypma lypma -0.0252680360"
## [954] "767 Streptococcus_pneumoniae lypma lypma -0.0282240301"
## [955] "768 Veillonella_infantium molysis molysis 0.0196979859"
## [956] "769 Stenotrophomonas_maltophilia lypma lypma -0.0222929308"
## [957] "770 Prevotella_jejuni benzonase benzonase 0.0211478034"
## [958] "771 Thermoleophilum_album qiaamp qiaamp 0.0068007116"
## [959] "772 Lachnoanaerobaculum_saburreum host_zero host_zero 0.0084698447"
## [960] "773 Streptococcus_pneumoniae benzonase benzonase 0.0039717864"
## [961] "774 Streptococcus_pneumoniae host_zero host_zero -0.0043018446"
## [962] "775 Parvimonas_sp_oral_taxon_393 benzonase benzonase -0.0005475072"
## [963] " stderr pval name qval N N.not.zero"
## [964] "1 0.1735043 1.073990e-11 lypma 5.216564e-09 30 25"
## [965] "2 0.1735043 1.346210e-11 benzonase 5.216564e-09 30 25"
## [966] "3 0.1735043 2.638554e-11 qiaamp 6.816264e-09 30 25"
## [967] "4 0.2158450 4.421241e-11 molysis 6.852923e-09 30 6"
## [968] "5 0.2580067 3.876654e-11 molysis 6.852923e-09 30 29"
## [969] "6 0.1735043 1.157428e-10 molysis 1.495011e-08 30 25"
## [970] "7 0.1735043 1.703769e-10 host_zero 1.886315e-08 30 25"
## [971] "8 0.2369937 3.621841e-10 molysis 3.508659e-08 30 6"
## [972] "9 0.2343744 1.880287e-09 lypma 1.573690e-07 30 26"
## [973] "10 0.2158450 2.030567e-09 host_zero 1.573690e-07 30 6"
## [974] "11 0.2343744 4.574769e-09 benzonase 3.223133e-07 30 26"
## [975] "12 0.2369937 5.646647e-09 host_zero 3.646793e-07 30 6"
## [976] "13 0.2343744 9.837992e-09 qiaamp 5.864957e-07 30 26"
## [977] "14 0.2343744 2.512001e-08 molysis 1.390572e-06 30 26"
## [978] "15 0.2343744 2.697601e-08 host_zero 1.393760e-06 30 26"
## [979] "16 0.2580067 5.109119e-08 host_zero 2.474729e-06 30 29"
## [980] "17 0.2158450 8.058598e-08 qiaamp 3.673772e-06 30 6"
## [981] "18 0.2369937 1.277980e-07 qiaamp 5.502414e-06 30 6"
## [982] "19 0.2686955 8.510461e-07 qiaamp 3.471372e-05 30 27"
## [983] "20 0.2717770 9.114775e-07 qiaamp 3.531975e-05 30 24"
## [984] "21 0.2686955 9.782674e-07 lypma 3.610273e-05 30 27"
## [985] "22 0.2580067 2.186176e-06 qiaamp 7.701302e-05 30 29"
## [986] "23 0.2717770 2.357633e-06 benzonase 7.944197e-05 30 24"
## [987] "24 0.2717770 3.304846e-06 host_zero 1.024502e-04 30 24"
## [988] "25 0.2717770 3.195846e-06 molysis 1.024502e-04 30 24"
## [989] "26 0.4000221 3.491571e-06 qiaamp 1.040757e-04 30 25"
## [990] "27 0.4000221 3.897277e-06 molysis 1.118663e-04 30 25"
## [991] "28 0.2686955 4.534327e-06 benzonase 1.255037e-04 30 27"
## [992] "29 0.2941877 4.903719e-06 qiaamp 1.310477e-04 30 23"
## [993] "30 0.2717770 5.492173e-06 lypma 1.359596e-04 30 24"
## [994] "31 0.3337704 5.387202e-06 qiaamp 1.359596e-04 30 23"
## [995] "32 0.5313621 5.613815e-06 molysis 1.359596e-04 30 7"
## [996] "33 0.2686955 5.986744e-06 host_zero 1.405978e-04 30 27"
## [997] "34 0.3928524 6.768729e-06 qiaamp 1.542872e-04 30 24"
## [998] "35 0.2903881 7.830777e-06 qiaamp 1.733958e-04 30 20"
## [999] "36 0.2686955 8.775919e-06 molysis 1.889260e-04 30 27"
## [1000] "37 0.4000221 1.065762e-05 host_zero 2.178316e-04 30 25"
## [1001] "38 0.2158450 1.068078e-05 benzonase 2.178316e-04 30 6"
## [1002] "39 0.3277754 1.173280e-05 qiaamp 2.331517e-04 30 23"
## [1003] "40 0.3337704 1.303246e-05 host_zero 2.525039e-04 30 23"
## [1004] "41 0.3986343 1.827456e-05 qiaamp 3.454337e-04 30 22"
## [1005] "42 0.4000221 1.997033e-05 benzonase 3.685002e-04 30 25"
## [1006] "43 0.3277754 2.340845e-05 host_zero 4.144799e-04 30 23"
## [1007] "44 0.3337704 2.353176e-05 molysis 4.144799e-04 30 23"
## [1008] "45 0.3277754 2.435126e-05 benzonase 4.193828e-04 30 23"
## [1009] "46 0.3277754 2.677910e-05 molysis 4.511697e-04 30 23"
## [1010] "47 0.3701937 2.899170e-05 qiaamp 4.780547e-04 30 22"
## [1011] "48 0.3337704 3.009081e-05 lypma 4.858412e-04 30 23"
## [1012] "49 0.2941877 3.435710e-05 host_zero 5.434031e-04 30 23"
## [1013] "50 0.3986343 3.746285e-05 host_zero 5.806741e-04 30 22"
## [1014] "51 0.3986343 4.308001e-05 molysis 6.182779e-04 30 22"
## [1015] "52 0.3090588 4.284993e-05 qiaamp 6.182779e-04 30 21"
## [1016] "53 0.2941877 4.219844e-05 molysis 6.182779e-04 30 23"
## [1017] "54 0.4766466 4.185792e-05 molysis 6.182779e-04 30 9"
## [1018] "55 0.3889623 4.857191e-05 molysis 6.844224e-04 30 7"
## [1019] "56 0.2369937 5.990609e-05 benzonase 8.290575e-04 30 6"
## [1020] "57 0.5488254 6.477480e-05 qiaamp 8.807100e-04 30 15"
## [1021] "58 0.3928524 6.993309e-05 benzonase 9.344508e-04 30 24"
## [1022] "59 0.3928524 7.727778e-05 host_zero 1.015089e-03 30 24"
## [1023] "60 0.3928524 8.284568e-05 molysis 1.070090e-03 30 24"
## [1024] "61 0.3824696 9.855657e-05 qiaamp 1.252153e-03 30 24"
## [1025] "62 0.5012314 1.007079e-04 molysis 1.258849e-03 30 10"
## [1026] "63 0.3701937 1.023561e-04 molysis 1.259142e-03 30 22"
## [1027] "64 0.3701937 1.070805e-04 host_zero 1.296678e-03 30 22"
## [1028] "65 0.4054906 1.170250e-04 host_zero 1.395298e-03 30 0"
## [1029] "66 0.4488706 1.208778e-04 qiaamp 1.419399e-03 30 22"
## [1030] "67 0.3337704 1.275189e-04 benzonase 1.475032e-03 30 23"
## [1031] "68 0.2903881 1.345137e-04 molysis 1.526833e-03 30 20"
## [1032] "69 0.5449559 1.359374e-04 molysis 1.526833e-03 30 4"
## [1033] "70 0.4646251 1.422301e-04 molysis 1.574690e-03 30 10"
## [1034] "71 0.2903881 1.552702e-04 host_zero 1.671311e-03 30 20"
## [1035] "72 0.4508224 1.552260e-04 molysis 1.671311e-03 30 7"
## [1036] "73 0.3828601 1.642572e-04 molysis 1.716581e-03 30 3"
## [1037] "74 0.4488706 1.661208e-04 host_zero 1.716581e-03 30 22"
## [1038] "75 0.5926787 1.647062e-04 molysis 1.716581e-03 30 6"
## [1039] "76 0.5190056 1.733893e-04 molysis 1.768115e-03 30 18"
## [1040] "77 0.3902568 1.791253e-04 qiaamp 1.787610e-03 30 21"
## [1041] "78 0.4488706 1.799143e-04 molysis 1.787610e-03 30 22"
## [1042] "79 0.3102765 1.875186e-04 benzonase 1.839582e-03 30 0"
## [1043] "80 0.3889623 1.902782e-04 host_zero 1.843320e-03 30 7"
## [1044] "81 0.3002936 2.065751e-04 qiaamp 1.976490e-03 30 20"
## [1045] "82 0.3824696 2.535196e-04 host_zero 2.375245e-03 30 24"
## [1046] "83 0.2941877 2.543810e-04 lypma 2.375245e-03 30 23"
## [1047] "84 0.5488254 2.929919e-04 host_zero 2.703199e-03 30 15"
## [1048] "85 0.3493518 3.661287e-04 qiaamp 3.338232e-03 30 24"
## [1049] "86 0.3902568 3.816317e-04 host_zero 3.399592e-03 30 21"
## [1050] "87 0.2906454 3.780815e-04 qiaamp 3.399592e-03 30 22"
## [1051] "88 0.3824696 3.881511e-04 molysis 3.418376e-03 30 24"
## [1052] "89 0.3220743 3.959569e-04 benzonase 3.447939e-03 30 0"
## [1053] "90 0.3889623 4.207829e-04 qiaamp 3.623408e-03 30 7"
## [1054] "91 0.5449559 4.340988e-04 host_zero 3.696995e-03 30 4"
## [1055] "92 0.5205186 4.558014e-04 host_zero 3.798345e-03 30 12"
## [1056] "93 0.4980128 4.514244e-04 molysis 3.798345e-03 30 7"
## [1057] "94 0.3492812 4.640965e-04 qiaamp 3.826328e-03 30 24"
## [1058] "95 0.3090588 5.034340e-04 molysis 4.106961e-03 30 21"
## [1059] "96 0.2941877 5.160556e-04 benzonase 4.166074e-03 30 23"
## [1060] "97 0.3928524 5.214575e-04 lypma 4.166284e-03 30 24"
## [1061] "98 0.3524760 5.526434e-04 qiaamp 4.208495e-03 30 21"
## [1062] "99 0.3902568 5.530571e-04 molysis 4.208495e-03 30 21"
## [1063] "100 0.5798397 5.538923e-04 host_zero 4.208495e-03 30 3"
## [1064] "101 0.4766466 5.364225e-04 qiaamp 4.208495e-03 30 9"
## [1065] "102 0.6475450 5.428457e-04 molysis 4.208495e-03 30 8"
## [1066] "103 0.3402142 5.650116e-04 qiaamp 4.251301e-03 30 24"
## [1067] "104 0.4244041 6.002782e-04 host_zero 4.473227e-03 30 5"
## [1068] "105 0.3402142 6.124861e-04 lypma 4.520731e-03 30 24"
## [1069] "106 0.3090588 6.487653e-04 host_zero 4.699001e-03 30 21"
## [1070] "107 0.3493518 6.484483e-04 host_zero 4.699001e-03 30 24"
## [1071] "108 0.3986343 6.635572e-04 benzonase 4.761637e-03 30 22"
## [1072] "109 0.3725226 6.933221e-04 qiaamp 4.929584e-03 30 6"
## [1073] "110 0.4280442 7.193887e-04 qiaamp 5.068420e-03 30 21"
## [1074] "111 0.4107313 7.494727e-04 qiaamp 5.232805e-03 30 21"
## [1075] "112 0.2413929 9.191440e-04 qiaamp 6.360149e-03 30 20"
## [1076] "113 0.3541369 9.726094e-04 benzonase 6.670551e-03 30 0"
## [1077] "114 0.3701937 1.057607e-03 benzonase 7.189871e-03 30 22"
## [1078] "115 0.3220743 1.121616e-03 qiaamp 7.429505e-03 30 0"
## [1079] "116 0.6301492 1.119586e-03 molysis 7.429505e-03 30 15"
## [1080] "117 0.3402142 1.119651e-03 molysis 7.429505e-03 30 24"
## [1081] "118 0.5190056 1.187981e-03 qiaamp 7.802420e-03 30 18"
## [1082] "119 0.4281553 1.229963e-03 qiaamp 8.010262e-03 30 17"
## [1083] "120 0.3077962 1.343091e-03 qiaamp 8.674130e-03 30 19"
## [1084] "121 0.4026980 1.389473e-03 qiaamp 8.730673e-03 30 26"
## [1085] "122 0.4054906 1.388714e-03 qiaamp 8.730673e-03 30 0"
## [1086] "123 0.3988182 1.396908e-03 host_zero 8.730673e-03 30 0"
## [1087] "124 0.5880584 1.391030e-03 molysis 8.730673e-03 30 10"
## [1088] "125 0.3077962 1.411589e-03 host_zero 8.751855e-03 30 19"
## [1089] "126 0.3524760 1.464350e-03 host_zero 9.006917e-03 30 21"
## [1090] "127 0.3493518 1.549589e-03 molysis 9.382655e-03 30 24"
## [1091] "128 0.3002936 1.561758e-03 molysis 9.382655e-03 30 20"
## [1092] "129 0.4041617 1.556195e-03 qiaamp 9.382655e-03 30 22"
## [1093] "130 0.5724325 1.612748e-03 molysis 9.614460e-03 30 7"
## [1094] "131 0.2760720 1.652059e-03 benzonase 9.764019e-03 30 8"
## [1095] "132 0.4331148 1.663033e-03 molysis 9.764019e-03 30 4"
## [1096] "133 0.3524760 1.700003e-03 molysis 9.906030e-03 30 21"
## [1097] "134 0.3561642 1.724193e-03 molysis 9.972014e-03 30 25"
## [1098] "135 0.4542678 1.741104e-03 qiaamp 9.995227e-03 30 23"
## [1099] "136 0.3492812 1.858638e-03 host_zero 1.059150e-02 30 24"
## [1100] "137 0.4201979 1.955124e-03 qiaamp 1.074625e-02 30 0"
## [1101] "138 0.4054906 1.942952e-03 molysis 1.074625e-02 30 0"
## [1102] "139 0.4381504 1.953962e-03 lypma 1.074625e-02 30 22"
## [1103] "140 0.4955104 1.949852e-03 qiaamp 1.074625e-02 30 14"
## [1104] "141 0.2580067 1.901253e-03 benzonase 1.074625e-02 30 29"
## [1105] "142 0.3402142 2.022018e-03 host_zero 1.103566e-02 30 24"
## [1106] "143 0.3828601 2.061598e-03 qiaamp 1.109540e-02 30 3"
## [1107] "144 0.5449559 2.053132e-03 qiaamp 1.109540e-02 30 4"
## [1108] "145 0.3828601 2.080128e-03 host_zero 1.111792e-02 30 3"
## [1109] "146 0.4000221 2.102326e-03 lypma 1.115961e-02 30 25"
## [1110] "147 0.2906454 2.150876e-03 molysis 1.133965e-02 30 22"
## [1111] "148 0.3002936 2.259986e-03 host_zero 1.183439e-02 30 20"
## [1112] "149 0.4280442 2.335811e-03 molysis 1.214935e-02 30 21"
## [1113] "150 0.4281553 2.444887e-03 host_zero 1.263191e-02 30 17"
## [1114] "151 0.5886464 2.471242e-03 molysis 1.268353e-02 30 3"
## [1115] "152 0.2906454 2.540024e-03 host_zero 1.295078e-02 30 22"
## [1116] "153 0.5205186 2.592333e-03 qiaamp 1.313110e-02 30 12"
## [1117] "154 0.3988182 2.658679e-03 benzonase 1.329340e-02 30 0"
## [1118] "155 0.4041617 2.646955e-03 molysis 1.329340e-02 30 22"
## [1119] "156 0.4462598 2.745554e-03 qiaamp 1.363977e-02 30 0"
## [1120] "157 0.2465428 2.833141e-03 qiaamp 1.378191e-02 30 18"
## [1121] "158 0.2413929 2.838990e-03 molysis 1.378191e-02 30 20"
## [1122] "159 0.4041617 2.812750e-03 benzonase 1.378191e-02 30 22"
## [1123] "160 0.5012314 2.845298e-03 qiaamp 1.378191e-02 30 10"
## [1124] "161 0.3541369 2.917080e-03 qiaamp 1.404185e-02 30 0"
## [1125] "162 0.4600808 2.950658e-03 benzonase 1.411580e-02 30 26"
## [1126] "163 0.7562160 2.974392e-03 molysis 1.414205e-02 30 10"
## [1127] "164 0.3492812 3.018069e-03 molysis 1.422295e-02 30 24"
## [1128] "165 0.4054906 3.028112e-03 benzonase 1.422295e-02 30 0"
## [1129] "166 0.4201979 3.068253e-03 molysis 1.432467e-02 30 0"
## [1130] "167 0.4070401 3.118960e-03 benzonase 1.447422e-02 30 3"
## [1131] "168 0.3561642 3.153426e-03 qiaamp 1.448744e-02 30 25"
## [1132] "169 0.2413929 3.159197e-03 host_zero 1.448744e-02 30 20"
## [1133] "170 0.4450543 3.178762e-03 molysis 1.449141e-02 30 0"
## [1134] "171 0.4107313 3.337348e-03 host_zero 1.512541e-02 30 21"
## [1135] "172 0.2158450 3.531920e-03 lypma 1.591417e-02 30 6"
## [1136] "173 0.4542678 3.613045e-03 molysis 1.618561e-02 30 23"
## [1137] "174 0.4955104 3.656296e-03 host_zero 1.628522e-02 30 14"
## [1138] "175 0.2779413 3.788027e-03 qiaamp 1.677555e-02 30 15"
## [1139] "176 0.5724325 3.824662e-03 qiaamp 1.684155e-02 30 7"
## [1140] "177 0.2779413 3.905023e-03 benzonase 1.699217e-02 30 15"
## [1141] "178 0.3077962 3.894535e-03 molysis 1.699217e-02 30 19"
## [1142] "179 0.4280442 3.924644e-03 benzonase 1.699217e-02 30 21"
## [1143] "180 0.4201979 3.970996e-03 benzonase 1.709734e-02 30 0"
## [1144] "181 0.5798397 4.208512e-03 qiaamp 1.801987e-02 30 3"
## [1145] "182 0.4542678 4.260679e-03 host_zero 1.806403e-02 30 23"
## [1146] "183 0.5381643 4.265442e-03 molysis 1.806403e-02 30 19"
## [1147] "184 0.4281553 4.361309e-03 molysis 1.836964e-02 30 17"
## [1148] "185 0.4026980 4.486723e-03 host_zero 1.870954e-02 30 26"
## [1149] "186 0.4026927 4.490290e-03 qiaamp 1.870954e-02 30 20"
## [1150] "187 0.2690274 4.665678e-03 qiaamp 1.933636e-02 30 19"
## [1151] "188 0.4175947 4.835853e-03 qiaamp 1.993503e-02 30 6"
## [1152] "189 0.4026980 4.891120e-03 molysis 2.005618e-02 30 26"
## [1153] "190 0.4656622 4.918320e-03 host_zero 2.006157e-02 30 0"
## [1154] "191 0.4041617 5.028293e-03 host_zero 2.040276e-02 30 22"
## [1155] "192 0.4381504 5.104909e-03 molysis 2.060575e-02 30 22"
## [1156] "193 0.4442167 5.147495e-03 benzonase 2.066999e-02 30 8"
## [1157] "194 0.1561637 5.286906e-03 lypma 2.101206e-02 30 30"
## [1158] "195 0.4450543 5.260150e-03 qiaamp 2.101206e-02 30 0"
## [1159] "196 0.3402142 5.396215e-03 benzonase 2.133707e-02 30 24"
## [1160] "197 0.4766466 5.544431e-03 host_zero 2.181185e-02 30 9"
## [1161] "198 0.3902568 5.592332e-03 benzonase 2.188918e-02 30 21"
## [1162] "199 0.4600808 5.642771e-03 molysis 2.197562e-02 30 26"
## [1163] "200 0.3561642 5.707930e-03 host_zero 2.200819e-02 30 25"
## [1164] "201 0.4475123 5.701191e-03 qiaamp 2.200819e-02 30 2"
## [1165] "202 0.4656622 5.796071e-03 qiaamp 2.223740e-02 30 0"
## [1166] "203 0.3701937 6.031267e-03 lypma 2.280113e-02 30 22"
## [1167] "204 0.4450543 6.006574e-03 benzonase 2.280113e-02 30 0"
## [1168] "205 0.5646422 5.981535e-03 molysis 2.280113e-02 30 4"
## [1169] "206 0.4462598 6.120440e-03 benzonase 2.302593e-02 30 0"
## [1170] "207 0.2903881 6.431262e-03 benzonase 2.407840e-02 30 20"
## [1171] "208 0.4239708 6.600701e-03 qiaamp 2.451717e-02 30 17"
## [1172] "209 0.3100354 6.611727e-03 lypma 2.451717e-02 30 29"
## [1173] "210 0.4331148 6.691372e-03 qiaamp 2.469435e-02 30 4"
## [1174] "211 0.2634630 6.909052e-03 qiaamp 2.537685e-02 30 19"
## [1175] "212 0.2690274 7.147754e-03 molysis 2.612976e-02 30 19"
## [1176] "213 0.6301492 7.307189e-03 qiaamp 2.646295e-02 30 15"
## [1177] "214 0.4329363 7.300570e-03 qiaamp 2.646295e-02 30 21"
## [1178] "215 0.5269956 7.550822e-03 qiaamp 2.721808e-02 30 4"
## [1179] "216 0.2779413 7.909536e-03 host_zero 2.837912e-02 30 15"
## [1180] "217 0.4656622 8.158190e-03 benzonase 2.902117e-02 30 0"
## [1181] "218 0.4770693 8.163374e-03 molysis 2.902117e-02 30 5"
## [1182] "219 0.3986343 8.494352e-03 lypma 2.992329e-02 30 22"
## [1183] "220 0.3493518 8.494002e-03 lypma 2.992329e-02 30 24"
## [1184] "221 0.4244041 8.654710e-03 qiaamp 3.035023e-02 30 5"
## [1185] "222 0.4704044 8.716627e-03 benzonase 3.042967e-02 30 1"
## [1186] "223 0.4244041 8.953494e-03 molysis 3.111640e-02 30 5"
## [1187] "224 0.4600808 9.093681e-03 lypma 3.146251e-02 30 26"
## [1188] "225 0.3493518 9.195002e-03 benzonase 3.167168e-02 30 24"
## [1189] "226 0.2690274 9.251413e-03 host_zero 3.172498e-02 30 19"
## [1190] "227 0.2779413 9.351618e-03 molysis 3.192733e-02 30 15"
## [1191] "228 0.3626573 9.421748e-03 qiaamp 3.202568e-02 30 29"
## [1192] "229 0.6294977 9.543546e-03 qiaamp 3.229803e-02 30 10"
## [1193] "230 0.4600808 9.788566e-03 qiaamp 3.295058e-02 30 26"
## [1194] "231 0.4792329 9.821397e-03 benzonase 3.295058e-02 30 6"
## [1195] "232 0.3824696 9.865706e-03 benzonase 3.295656e-02 30 24"
## [1196] "233 0.5313621 1.012506e-02 host_zero 3.367779e-02 30 7"
## [1197] "234 0.4201979 1.037202e-02 host_zero 3.420560e-02 30 0"
## [1198] "235 0.4381504 1.032807e-02 benzonase 3.420560e-02 30 22"
## [1199] "236 0.4026927 1.055855e-02 host_zero 3.467321e-02 30 20"
## [1200] "237 0.3264772 1.074333e-02 qiaamp 3.513113e-02 30 19"
## [1201] "238 0.3268562 1.086306e-02 qiaamp 3.537340e-02 30 12"
## [1202] "239 0.3626573 1.108521e-02 lypma 3.594577e-02 30 29"
## [1203] "240 0.6294977 1.116153e-02 host_zero 3.604243e-02 30 10"
## [1204] "241 0.3988182 1.127228e-02 qiaamp 3.624902e-02 30 0"
## [1205] "242 0.2779413 1.163867e-02 lypma 3.727260e-02 30 15"
## [1206] "243 0.5014030 1.174700e-02 benzonase 3.746471e-02 30 4"
## [1207] "244 0.4998426 1.273795e-02 benzonase 4.012971e-02 30 7"
## [1208] "245 0.4329363 1.266871e-02 host_zero 4.012971e-02 30 21"
## [1209] "246 0.4488706 1.269034e-02 lypma 4.012971e-02 30 22"
## [1210] "247 0.4329363 1.289888e-02 molysis 4.047219e-02 30 21"
## [1211] "248 0.4462598 1.307650e-02 molysis 4.086406e-02 30 0"
## [1212] "249 0.4488706 1.355902e-02 benzonase 4.220175e-02 30 22"
## [1213] "250 0.4873236 1.459196e-02 lypma 4.523509e-02 30 21"
## [1214] "251 0.2369937 1.477495e-02 lypma 4.561985e-02 30 6"
## [1215] "252 0.5752405 1.505657e-02 host_zero 4.630492e-02 30 5"
## [1216] "253 0.4239708 1.513623e-02 host_zero 4.636591e-02 30 17"
## [1217] "254 0.3002936 1.522903e-02 benzonase 4.646652e-02 30 20"
## [1218] "255 0.4980128 1.533713e-02 qiaamp 4.661286e-02 30 7"
## [1219] "256 0.4280442 1.569742e-02 lypma 4.752149e-02 30 21"
## [1220] "257 0.7052852 1.593733e-02 qiaamp 4.806005e-02 30 12"
## [1221] "258 0.4331148 1.623306e-02 host_zero 4.876210e-02 30 4"
## [1222] "259 0.2906454 1.640210e-02 benzonase 4.907964e-02 30 22"
## [1223] "260 0.3090588 1.652461e-02 lypma 4.925606e-02 30 21"
## [1224] "261 0.4462598 1.660385e-02 host_zero 4.930262e-02 30 0"
## [1225] "262 0.3096985 1.668918e-02 qiaamp 4.936684e-02 30 29"
## [1226] "263 0.2634630 1.688171e-02 molysis 4.955804e-02 30 19"
## [1227] "264 0.3541369 1.683228e-02 host_zero 4.955804e-02 30 0"
## [1228] "265 0.5269956 1.731976e-02 benzonase 5.065214e-02 30 4"
## [1229] "266 0.5315065 1.816243e-02 benzonase 5.291684e-02 30 7"
## [1230] "267 0.4600808 1.826484e-02 host_zero 5.301591e-02 30 26"
## [1231] "268 0.3824696 1.851320e-02 lypma 5.353631e-02 30 24"
## [1232] "269 0.4873236 1.858632e-02 qiaamp 5.354794e-02 30 21"
## [1233] "270 0.4803488 1.919331e-02 qiaamp 5.509191e-02 30 5"
## [1234] "271 0.5261576 1.948860e-02 molysis 5.573308e-02 30 5"
## [1235] "272 0.2465428 1.998337e-02 host_zero 5.693791e-02 30 18"
## [1236] "273 0.3102765 2.021219e-02 lypma 5.737894e-02 30 0"
## [1237] "274 0.4450543 2.077693e-02 host_zero 5.876686e-02 30 0"
## [1238] "275 0.7052852 2.117276e-02 host_zero 5.966869e-02 30 12"
## [1239] "276 0.4225638 2.253905e-02 qiaamp 6.328901e-02 30 27"
## [1240] "277 0.1561637 2.393835e-02 qiaamp 6.697553e-02 30 30"
## [1241] "278 0.4770693 2.446690e-02 qiaamp 6.820810e-02 30 5"
## [1242] "279 0.5190056 2.464745e-02 host_zero 6.824877e-02 30 18"
## [1243] "280 0.4280442 2.465762e-02 host_zero 6.824877e-02 30 21"
## [1244] "281 0.3277754 2.551923e-02 lypma 7.038222e-02 30 23"
## [1245] "282 0.4873236 2.626892e-02 host_zero 7.193786e-02 30 21"
## [1246] "283 0.4803488 2.619958e-02 molysis 7.193786e-02 30 5"
## [1247] "284 0.3220743 2.645434e-02 lypma 7.219055e-02 30 0"
## [1248] "285 0.2465428 2.693101e-02 molysis 7.297739e-02 30 18"
## [1249] "286 0.4070401 2.685258e-02 qiaamp 7.297739e-02 30 3"
## [1250] "287 0.3096985 2.745428e-02 benzonase 7.413612e-02 30 29"
## [1251] "288 0.4381504 2.804171e-02 qiaamp 7.519837e-02 30 22"
## [1252] "289 0.4026927 2.803889e-02 molysis 7.519837e-02 30 20"
## [1253] "290 0.3268562 2.847392e-02 lypma 7.609409e-02 30 12"
## [1254] "291 0.2906454 2.866278e-02 lypma 7.633559e-02 30 22"
## [1255] "292 0.3264772 2.898495e-02 molysis 7.682523e-02 30 19"
## [1256] "293 0.4508224 2.904489e-02 host_zero 7.682523e-02 30 7"
## [1257] "294 0.4770693 2.931802e-02 host_zero 7.728391e-02 30 5"
## [1258] "295 0.4329363 2.965799e-02 benzonase 7.791505e-02 30 21"
## [1259] "296 0.4254768 2.984994e-02 benzonase 7.815441e-02 30 2"
## [1260] "297 0.3096985 3.032497e-02 lypma 7.913081e-02 30 29"
## [1261] "298 0.5886464 3.083426e-02 benzonase 8.018978e-02 30 3"
## [1262] "299 0.3524760 3.147454e-02 benzonase 8.158117e-02 30 21"
## [1263] "300 0.2634630 3.163060e-02 host_zero 8.171239e-02 30 19"
## [1264] "301 0.2706686 3.183878e-02 qiaamp 8.197694e-02 30 13"
## [1265] "302 0.3561642 3.234414e-02 benzonase 8.300233e-02 30 25"
## [1266] "303 0.3626573 3.265442e-02 host_zero 8.324729e-02 30 29"
## [1267] "304 0.7052852 3.255534e-02 molysis 8.324729e-02 30 12"
## [1268] "305 0.6021462 3.434720e-02 benzonase 8.727566e-02 30 7"
## [1269] "306 0.3626573 3.446564e-02 molysis 8.729042e-02 30 29"
## [1270] "307 0.6033618 3.467277e-02 benzonase 8.752899e-02 30 7"
## [1271] "308 0.5798397 3.507974e-02 molysis 8.826882e-02 30 3"
## [1272] "309 0.4239708 3.912462e-02 molysis 9.812809e-02 30 17"
## [1273] "310 0.4803488 3.983120e-02 host_zero 9.957799e-02 30 5"
## [1274] "311 0.3492812 4.010814e-02 benzonase 9.962760e-02 30 24"
## [1275] "312 0.4175947 4.002067e-02 benzonase 9.962760e-02 30 6"
## [1276] "313 0.3541369 4.143352e-02 lypma 1.025910e-01 30 0"
## [1277] "314 0.5449559 4.246783e-02 lypma 1.048171e-01 30 4"
## [1278] "315 0.4331148 4.282349e-02 benzonase 1.053594e-01 30 4"
## [1279] "316 0.7119629 4.315240e-02 molysis 1.058326e-01 30 12"
## [1280] "317 0.4542678 4.361790e-02 benzonase 1.066368e-01 30 23"
## [1281] "318 0.3264772 4.484006e-02 host_zero 1.092800e-01 30 19"
## [1282] "319 0.3889623 4.578343e-02 lypma 1.112293e-01 30 7"
## [1283] "320 0.5261576 4.606543e-02 qiaamp 1.115647e-01 30 5"
## [1284] "321 0.4656622 4.637053e-02 molysis 1.119538e-01 30 0"
## [1285] "322 0.5930126 4.740064e-02 host_zero 1.140854e-01 30 19"
## [1286] "323 0.3090588 4.789364e-02 benzonase 1.149151e-01 30 21"
## [1287] "324 0.5434821 5.016562e-02 molysis 1.199949e-01 30 11"
## [1288] "325 0.5886464 5.083738e-02 qiaamp 1.212276e-01 30 3"
## [1289] "326 0.2413929 5.146225e-02 benzonase 1.223412e-01 30 20"
## [1290] "327 0.6033618 5.177628e-02 qiaamp 1.227114e-01 30 7"
## [1291] "328 0.4896110 5.238863e-02 qiaamp 1.237841e-01 30 17"
## [1292] "329 0.5431104 5.262880e-02 molysis 1.239736e-01 30 19"
## [1293] "330 0.3268562 5.382381e-02 host_zero 1.264044e-01 30 12"
## [1294] "331 0.5704730 5.403045e-02 qiaamp 1.265063e-01 30 17"
## [1295] "332 0.5183163 5.523339e-02 host_zero 1.289334e-01 30 24"
## [1296] "333 0.4873236 5.728625e-02 benzonase 1.333239e-01 30 21"
## [1297] "334 0.5183163 5.830184e-02 lypma 1.349260e-01 30 24"
## [1298] "335 0.5183163 5.832285e-02 molysis 1.349260e-01 30 24"
## [1299] "336 0.6475450 5.894384e-02 lypma 1.359568e-01 30 8"
## [1300] "337 0.7562160 5.967406e-02 host_zero 1.372326e-01 30 10"
## [1301] "338 0.4704044 6.130040e-02 qiaamp 1.405556e-01 30 1"
## [1302] "339 0.6323684 6.149843e-02 molysis 1.405938e-01 30 8"
## [1303] "340 0.4041617 6.171624e-02 lypma 1.406767e-01 30 22"
## [1304] "341 0.5930126 6.249258e-02 benzonase 1.420286e-01 30 19"
## [1305] "342 0.3626573 6.561811e-02 benzonase 1.465591e-01 30 29"
## [1306] "343 0.3351582 6.592915e-02 host_zero 1.465591e-01 30 16"
## [1307] "344 0.4704044 6.521682e-02 host_zero 1.465591e-01 30 1"
## [1308] "345 0.4381504 6.492866e-02 host_zero 1.465591e-01 30 22"
## [1309] "346 0.5932556 6.580116e-02 benzonase 1.465591e-01 30 18"
## [1310] "347 0.5172034 6.525147e-02 lypma 1.465591e-01 30 17"
## [1311] "348 0.4610452 6.583048e-02 qiaamp 1.465591e-01 30 14"
## [1312] "349 0.5752405 6.599886e-02 molysis 1.465591e-01 30 5"
## [1313] "350 0.5930126 6.673211e-02 molysis 1.477640e-01 30 19"
## [1314] "351 0.3988182 6.723633e-02 lypma 1.484563e-01 30 0"
## [1315] "352 0.1561637 6.750584e-02 benzonase 1.486279e-01 30 30"
## [1316] "353 0.5886464 6.773139e-02 host_zero 1.487021e-01 30 3"
## [1317] "354 0.5292354 6.818487e-02 qiaamp 1.492748e-01 30 12"
## [1318] "355 0.6475450 6.850692e-02 qiaamp 1.495574e-01 30 8"
## [1319] "356 0.4244041 6.897764e-02 benzonase 1.501620e-01 30 5"
## [1320] "357 0.4225638 7.019729e-02 molysis 1.523891e-01 30 27"
## [1321] "358 0.5183163 7.076434e-02 qiaamp 1.531910e-01 30 24"
## [1322] "359 0.4866441 7.109698e-02 molysis 1.534823e-01 30 18"
## [1323] "360 0.4054906 7.148935e-02 lypma 1.539007e-01 30 0"
## [1324] "361 0.4071252 7.254467e-02 lypma 1.553097e-01 30 12"
## [1325] "362 0.4070401 7.248963e-02 lypma 1.553097e-01 30 3"
## [1326] "363 0.5261576 7.321611e-02 host_zero 1.563154e-01 30 5"
## [1327] "364 0.2706686 7.342376e-02 benzonase 1.563281e-01 30 13"
## [1328] "365 0.3119144 7.397168e-02 qiaamp 1.570632e-01 30 16"
## [1329] "366 0.4475123 7.577461e-02 host_zero 1.604517e-01 30 2"
## [1330] "367 0.5161944 7.639052e-02 molysis 1.607200e-01 30 16"
## [1331] "368 0.3096985 7.641845e-02 host_zero 1.607200e-01 30 29"
## [1332] "369 0.4225638 7.680052e-02 benzonase 1.607200e-01 30 27"
## [1333] "370 0.4137694 7.688571e-02 lypma 1.607200e-01 30 12"
## [1334] "371 0.4175947 7.693824e-02 lypma 1.607200e-01 30 6"
## [1335] "372 0.6505361 7.761398e-02 qiaamp 1.614316e-01 30 16"
## [1336] "373 0.5932556 7.790377e-02 molysis 1.614316e-01 30 18"
## [1337] "374 0.7002132 7.786996e-02 qiaamp 1.614316e-01 30 11"
## [1338] "375 0.4225638 7.892151e-02 host_zero 1.626707e-01 30 27"
## [1339] "376 0.5752405 7.881335e-02 qiaamp 1.626707e-01 30 5"
## [1340] "377 0.5172034 8.047144e-02 qiaamp 1.654254e-01 30 17"
## [1341] "378 0.5313621 8.073032e-02 qiaamp 1.655185e-01 30 7"
## [1342] "379 0.4201979 8.116032e-02 lypma 1.659611e-01 30 0"
## [1343] "380 0.5161944 8.176941e-02 host_zero 1.667666e-01 30 16"
## [1344] "381 0.4562248 8.238010e-02 molysis 1.675711e-01 30 13"
## [1345] "382 0.4896110 8.398089e-02 molysis 1.703801e-01 30 17"
## [1346] "383 0.4254768 8.472153e-02 lypma 1.714339e-01 30 2"
## [1347] "384 0.4281553 8.654505e-02 lypma 1.745013e-01 30 17"
## [1348] "385 0.4026980 8.668774e-02 benzonase 1.745013e-01 30 26"
## [1349] "386 0.3102765 8.834635e-02 host_zero 1.773793e-01 30 0"
## [1350] "387 0.5014030 9.125404e-02 qiaamp 1.827439e-01 30 4"
## [1351] "388 0.3828601 9.307632e-02 benzonase 1.859128e-01 30 3"
## [1352] "389 0.4704044 9.375168e-02 molysis 1.867803e-01 30 1"
## [1353] "390 0.4442167 9.513394e-02 lypma 1.890482e-01 30 8"
## [1354] "391 0.5695787 9.682577e-02 molysis 1.919181e-01 30 14"
## [1355] "392 0.2465428 9.729779e-02 benzonase 1.919860e-01 30 18"
## [1356] "393 0.2580067 9.735546e-02 lypma 1.919860e-01 30 29"
## [1357] "394 0.4450543 9.828226e-02 lypma 1.933217e-01 30 0"
## [1358] "395 0.4495403 9.889051e-02 lypma 1.940111e-01 30 10"
## [1359] "396 0.4462598 9.913343e-02 lypma 1.940111e-01 30 0"
## [1360] "397 0.5431104 9.954025e-02 host_zero 1.941190e-01 30 19"
## [1361] "398 0.4329363 9.968952e-02 lypma 1.941190e-01 30 21"
## [1362] "399 0.4475123 1.000196e-01 lypma 1.942736e-01 30 2"
## [1363] "400 0.4646251 1.004579e-01 host_zero 1.946373e-01 30 10"
## [1364] "401 0.4508224 1.009950e-01 qiaamp 1.951898e-01 30 7"
## [1365] "402 0.5894163 1.014933e-01 benzonase 1.956649e-01 30 6"
## [1366] "403 0.3264772 1.024310e-01 benzonase 1.969826e-01 30 19"
## [1367] "404 0.7148173 1.033851e-01 molysis 1.983254e-01 30 6"
## [1368] "405 0.4026980 1.055367e-01 lypma 2.019530e-01 30 26"
## [1369] "406 0.4989084 1.064556e-01 benzonase 2.032096e-01 30 7"
## [1370] "407 0.3096985 1.086585e-01 molysis 2.069050e-01 30 29"
## [1371] "408 0.4531446 1.108045e-01 qiaamp 2.104743e-01 30 10"
## [1372] "409 0.2760720 1.129444e-01 lypma 2.131612e-01 30 8"
## [1373] "410 0.4656622 1.130442e-01 lypma 2.131612e-01 30 0"
## [1374] "411 0.7119629 1.126853e-01 qiaamp 2.131612e-01 30 12"
## [1375] "412 0.4803488 1.146735e-01 benzonase 2.157086e-01 30 5"
## [1376] "413 0.5012314 1.153524e-01 host_zero 2.164603e-01 30 10"
## [1377] "414 0.5646422 1.161402e-01 host_zero 2.174121e-01 30 4"
## [1378] "415 0.4704044 1.164966e-01 lypma 2.175539e-01 30 1"
## [1379] "416 0.3119144 1.173654e-01 host_zero 2.181251e-01 30 16"
## [1380] "417 0.5014030 1.172538e-01 host_zero 2.181251e-01 30 4"
## [1381] "418 0.5488254 1.205691e-01 molysis 2.235432e-01 30 15"
## [1382] "419 0.3220743 1.210146e-01 host_zero 2.238337e-01 30 0"
## [1383] "420 0.6475450 1.214844e-01 host_zero 2.241676e-01 30 8"
## [1384] "421 0.3351582 1.225298e-01 molysis 2.245869e-01 30 16"
## [1385] "422 0.5936749 1.220493e-01 host_zero 2.245869e-01 30 9"
## [1386] "423 0.7002132 1.225810e-01 lypma 2.245869e-01 30 11"
## [1387] "424 0.3268562 1.233302e-01 molysis 2.254267e-01 30 12"
## [1388] "425 0.4989084 1.247123e-01 qiaamp 2.274166e-01 30 7"
## [1389] "426 0.4071252 1.256105e-01 host_zero 2.284552e-01 30 12"
## [1390] "427 0.3100354 1.258715e-01 benzonase 2.284552e-01 30 29"
## [1391] "428 0.5936749 1.263139e-01 qiaamp 2.287226e-01 30 9"
## [1392] "429 0.5172034 1.275455e-01 benzonase 2.304144e-01 30 17"
## [1393] "430 0.4866441 1.286038e-01 benzonase 2.317859e-01 30 18"
## [1394] "431 0.2706686 1.305257e-01 molysis 2.342755e-01 30 13"
## [1395] "432 0.5930126 1.305897e-01 lypma 2.342755e-01 30 19"
## [1396] "433 0.4909809 1.316547e-01 lypma 2.356407e-01 30 5"
## [1397] "434 0.3561642 1.324348e-01 lypma 2.364908e-01 30 25"
## [1398] "435 0.5086215 1.337644e-01 qiaamp 2.376777e-01 30 20"
## [1399] "436 0.4766466 1.334669e-01 lypma 2.376777e-01 30 9"
## [1400] "437 0.7002132 1.340196e-01 benzonase 2.376777e-01 30 11"
## [1401] "438 0.4770693 1.355554e-01 benzonase 2.398526e-01 30 5"
## [1402] "439 0.5014030 1.368249e-01 lypma 2.415474e-01 30 4"
## [1403] "440 0.4998426 1.382510e-01 lypma 2.435102e-01 30 7"
## [1404] "441 0.5381643 1.432700e-01 qiaamp 2.512087e-01 30 19"
## [1405] "442 0.5926787 1.432315e-01 host_zero 2.512087e-01 30 6"
## [1406] "443 0.5509958 1.436103e-01 benzonase 2.512370e-01 30 6"
## [1407] "444 0.2760720 1.474840e-01 qiaamp 2.574327e-01 30 8"
## [1408] "445 0.5704730 1.481312e-01 molysis 2.579813e-01 30 17"
## [1409] "446 0.6505361 1.510103e-01 host_zero 2.619590e-01 30 16"
## [1410] "447 0.5292354 1.510912e-01 benzonase 2.619590e-01 30 12"
## [1411] "448 0.4909809 1.537449e-01 benzonase 2.659650e-01 30 5"
## [1412] "449 0.5012314 1.548309e-01 lypma 2.672471e-01 30 10"
## [1413] "450 0.5183163 1.558474e-01 benzonase 2.684039e-01 30 24"
## [1414] "451 0.4998426 1.573147e-01 qiaamp 2.703302e-01 30 7"
## [1415] "452 0.5269956 1.586012e-01 lypma 2.719379e-01 30 4"
## [1416] "453 0.2706686 1.611914e-01 host_zero 2.757689e-01 30 13"
## [1417] "454 0.5315065 1.619900e-01 lypma 2.765248e-01 30 7"
## [1418] "455 0.4646251 1.633702e-01 qiaamp 2.782680e-01 30 10"
## [1419] "456 0.6744089 1.652328e-01 lypma 2.808233e-01 30 15"
## [1420] "457 0.3100354 1.668521e-01 molysis 2.829549e-01 30 29"
## [1421] "458 0.4071252 1.695052e-01 molysis 2.868266e-01 30 12"
## [1422] "459 0.7148173 1.703825e-01 host_zero 2.876828e-01 30 6"
## [1423] "460 0.5932556 1.725514e-01 lypma 2.900809e-01 30 18"
## [1424] "461 0.4254768 1.722452e-01 host_zero 2.900809e-01 30 2"
## [1425] "462 0.5765694 1.734203e-01 benzonase 2.909107e-01 30 14"
## [1426] "463 0.5646422 1.738884e-01 qiaamp 2.910660e-01 30 4"
## [1427] "464 0.5880584 1.750079e-01 benzonase 2.923084e-01 30 10"
## [1428] "465 0.6505361 1.756915e-01 molysis 2.928191e-01 30 16"
## [1429] "466 0.4700973 1.765864e-01 lypma 2.936791e-01 30 17"
## [1430] "467 0.3351582 1.774054e-01 qiaamp 2.944095e-01 30 16"
## [1431] "468 0.6301492 1.789817e-01 host_zero 2.963906e-01 30 15"
## [1432] "469 0.5509958 1.838103e-01 qiaamp 3.037377e-01 30 6"
## [1433] "470 0.5820709 1.861420e-01 molysis 3.067810e-01 30 7"
## [1434] "471 0.5646422 1.868395e-01 lypma 3.067810e-01 30 4"
## [1435] "472 0.7562160 1.865950e-01 qiaamp 3.067810e-01 30 10"
## [1436] "473 0.5653022 1.873324e-01 lypma 3.069399e-01 30 15"
## [1437] "474 0.5261576 1.885532e-01 benzonase 3.082885e-01 30 5"
## [1438] "475 0.5695787 1.905228e-01 lypma 3.089020e-01 30 14"
## [1439] "476 0.4531446 1.899686e-01 molysis 3.089020e-01 30 10"
## [1440] "477 0.4866441 1.904335e-01 qiaamp 3.089020e-01 30 18"
## [1441] "478 0.3119144 1.903328e-01 molysis 3.089020e-01 30 16"
## [1442] "479 0.7002132 1.915021e-01 molysis 3.098416e-01 30 11"
## [1443] "480 0.7071470 1.938542e-01 qiaamp 3.129937e-01 30 15"
## [1444] "481 0.5161944 1.961663e-01 benzonase 3.160684e-01 30 16"
## [1445] "482 0.4909809 1.972812e-01 host_zero 3.172052e-01 30 5"
## [1446] "483 0.4026927 1.985772e-01 lypma 3.186280e-01 30 20"
## [1447] "484 0.5886464 2.046726e-01 lypma 3.277300e-01 30 3"
## [1448] "485 0.5894163 2.052410e-01 lypma 3.279624e-01 30 6"
## [1449] "486 0.4107313 2.071631e-01 molysis 3.303527e-01 30 21"
## [1450] "487 0.4989084 2.111849e-01 host_zero 3.322346e-01 30 7"
## [1451] "488 0.2342764 2.089135e-01 molysis 3.322346e-01 30 11"
## [1452] "489 0.2342764 2.100751e-01 qiaamp 3.322346e-01 30 11"
## [1453] "490 0.5930126 2.113880e-01 qiaamp 3.322346e-01 30 19"
## [1454] "491 0.6323684 2.107540e-01 host_zero 3.322346e-01 30 8"
## [1455] "492 0.5172034 2.106969e-01 host_zero 3.322346e-01 30 17"
## [1456] "493 0.5488254 2.096944e-01 lypma 3.322346e-01 30 15"
## [1457] "494 0.5381643 2.117728e-01 host_zero 3.322346e-01 30 19"
## [1458] "495 0.6021462 2.146000e-01 lypma 3.359900e-01 30 7"
## [1459] "496 0.5205186 2.156344e-01 benzonase 3.369287e-01 30 12"
## [1460] "497 0.5205186 2.162586e-01 molysis 3.372242e-01 30 12"
## [1461] "498 0.2903881 2.169174e-01 lypma 3.375723e-01 30 20"
## [1462] "499 0.5313621 2.187819e-01 lypma 3.397915e-01 30 7"
## [1463] "500 0.4896110 2.209942e-01 host_zero 3.425410e-01 30 17"
## [1464] "501 0.4866441 2.215105e-01 host_zero 3.426560e-01 30 18"
## [1465] "502 0.2706686 2.243492e-01 lypma 3.456672e-01 30 13"
## [1466] "503 0.1561637 2.243167e-01 molysis 3.456672e-01 30 30"
## [1467] "504 0.2413929 2.301098e-01 lypma 3.538395e-01 30 20"
## [1468] "505 0.3889623 2.343412e-01 benzonase 3.596325e-01 30 7"
## [1469] "506 0.6323684 2.364829e-01 lypma 3.622020e-01 30 8"
## [1470] "507 0.6199624 2.372501e-01 lypma 3.626605e-01 30 15"
## [1471] "508 0.5315065 2.382229e-01 qiaamp 3.634306e-01 30 7"
## [1472] "509 0.4998426 2.391274e-01 host_zero 3.640937e-01 30 7"
## [1473] "510 0.7115955 2.399345e-01 host_zero 3.646064e-01 30 7"
## [1474] "511 0.4495403 2.404157e-01 benzonase 3.646226e-01 30 10"
## [1475] "512 0.5798397 2.440552e-01 benzonase 3.694195e-01 30 3"
## [1476] "513 0.4610452 2.454497e-01 host_zero 3.708061e-01 30 14"
## [1477] "514 0.4542678 2.476751e-01 lypma 3.727238e-01 30 23"
## [1478] "515 0.6486736 2.480621e-01 lypma 3.727238e-01 30 7"
## [1479] "516 0.6475450 2.481619e-01 benzonase 3.727238e-01 30 8"
## [1480] "517 0.4225638 2.516719e-01 lypma 3.772645e-01 30 27"
## [1481] "518 0.3823202 2.533031e-01 lypma 3.782464e-01 30 11"
## [1482] "519 0.3268562 2.528597e-01 benzonase 3.782464e-01 30 12"
## [1483] "520 0.4562248 2.544888e-01 qiaamp 3.792862e-01 30 13"
## [1484] "521 0.4026927 2.616179e-01 benzonase 3.891628e-01 30 20"
## [1485] "522 0.6486736 2.621718e-01 host_zero 3.892398e-01 30 7"
## [1486] "523 0.3264772 2.644961e-01 lypma 3.919398e-01 30 19"
## [1487] "524 0.4896110 2.704189e-01 lypma 3.999516e-01 30 17"
## [1488] "525 0.4873236 2.716471e-01 molysis 4.010029e-01 30 21"
## [1489] "526 0.5269956 2.727902e-01 host_zero 4.019248e-01 30 4"
## [1490] "527 0.5434821 2.774323e-01 qiaamp 4.079887e-01 30 11"
## [1491] "528 0.4475123 2.790349e-01 benzonase 4.095682e-01 30 2"
## [1492] "529 0.6021462 2.824263e-01 qiaamp 4.129818e-01 30 7"
## [1493] "530 0.3725226 2.822835e-01 lypma 4.129818e-01 30 6"
## [1494] "531 0.7148173 2.843158e-01 benzonase 4.149619e-01 30 6"
## [1495] "532 0.5653022 2.870950e-01 qiaamp 4.170906e-01 30 15"
## [1496] "533 0.2342764 2.873889e-01 host_zero 4.170906e-01 30 11"
## [1497] "534 0.3725226 2.866464e-01 benzonase 4.170906e-01 30 6"
## [1498] "535 0.6744089 2.901172e-01 host_zero 4.202633e-01 30 15"
## [1499] "536 0.7115955 2.910076e-01 lypma 4.207666e-01 30 7"
## [1500] "537 0.7148173 2.931270e-01 lypma 4.230417e-01 30 6"
## [1501] "538 0.5086215 2.948999e-01 molysis 4.248093e-01 30 20"
## [1502] "539 0.1561637 2.954991e-01 host_zero 4.248827e-01 30 30"
## [1503] "540 0.4495403 2.973021e-01 molysis 4.266836e-01 30 10"
## [1504] "541 0.3902568 2.987975e-01 lypma 4.280371e-01 30 21"
## [1505] "542 0.3823202 2.999580e-01 benzonase 4.289068e-01 30 11"
## [1506] "543 0.4071252 3.016842e-01 qiaamp 4.305806e-01 30 12"
## [1507] "544 0.3988182 3.058489e-01 molysis 4.357222e-01 30 0"
## [1508] "545 0.4531446 3.096102e-01 host_zero 4.392152e-01 30 10"
## [1509] "546 0.4980128 3.100009e-01 host_zero 4.392152e-01 30 7"
## [1510] "547 0.7562160 3.099751e-01 lypma 4.392152e-01 30 10"
## [1511] "548 0.3351582 3.141034e-01 lypma 4.442156e-01 30 16"
## [1512] "549 0.4562248 3.161253e-01 lypma 4.462607e-01 30 13"
## [1513] "550 0.3524760 3.181942e-01 lypma 4.483645e-01 30 21"
## [1514] "551 0.5894163 3.194154e-01 molysis 4.484546e-01 30 6"
## [1515] "552 0.4890149 3.193026e-01 benzonase 4.484546e-01 30 15"
## [1516] "553 0.4909809 3.235834e-01 qiaamp 4.534849e-01 30 5"
## [1517] "554 0.3492812 3.262893e-01 lypma 4.558426e-01 30 24"
## [1518] "555 0.4137694 3.264421e-01 qiaamp 4.558426e-01 30 12"
## [1519] "556 0.2342764 3.279535e-01 benzonase 4.571294e-01 30 11"
## [1520] "557 0.2465428 3.299807e-01 lypma 4.591293e-01 30 18"
## [1521] "558 0.3102765 3.312638e-01 qiaamp 4.592655e-01 30 0"
## [1522] "559 0.3725226 3.309888e-01 host_zero 4.592655e-01 30 6"
## [1523] "560 0.7115955 3.360594e-01 benzonase 4.650822e-01 30 7"
## [1524] "561 0.5926787 3.366886e-01 qiaamp 4.651224e-01 30 6"
## [1525] "562 0.5431104 3.375467e-01 qiaamp 4.654780e-01 30 19"
## [1526] "563 0.5695787 3.394622e-01 host_zero 4.672882e-01 30 14"
## [1527] "564 0.7920747 3.415046e-01 lypma 4.692661e-01 30 11"
## [1528] "565 0.2690274 3.422135e-01 benzonase 4.694079e-01 30 19"
## [1529] "566 0.5724325 3.439451e-01 host_zero 4.709496e-01 30 7"
## [1530] "567 0.7115955 3.463101e-01 molysis 4.733515e-01 30 7"
## [1531] "568 0.4896110 3.500532e-01 benzonase 4.776254e-01 30 17"
## [1532] "569 0.5315065 3.507420e-01 host_zero 4.777241e-01 30 7"
## [1533] "570 0.5205186 3.535410e-01 lypma 4.806917e-01 30 12"
## [1534] "571 0.4890149 3.588131e-01 molysis 4.858259e-01 30 15"
## [1535] "572 0.5765694 3.590230e-01 qiaamp 4.858259e-01 30 14"
## [1536] "573 0.6294977 3.591977e-01 molysis 4.858259e-01 30 10"
## [1537] "574 0.5936749 3.607218e-01 molysis 4.870372e-01 30 9"
## [1538] "575 0.5820709 3.614823e-01 benzonase 4.872153e-01 30 7"
## [1539] "576 0.5190056 3.628420e-01 lypma 4.877090e-01 30 18"
## [1540] "577 0.6323684 3.631072e-01 qiaamp 4.877090e-01 30 8"
## [1541] "578 0.4071252 3.651471e-01 benzonase 4.879710e-01 30 12"
## [1542] "579 0.5086215 3.651912e-01 benzonase 4.879710e-01 30 20"
## [1543] "580 0.5932556 3.649768e-01 qiaamp 4.879710e-01 30 18"
## [1544] "581 0.4562248 3.674783e-01 host_zero 4.901819e-01 30 13"
## [1545] "582 0.6007818 3.699703e-01 molysis 4.926580e-01 30 14"
## [1546] "583 0.3119144 3.821451e-01 lypma 5.079973e-01 30 16"
## [1547] "584 0.5086215 3.855757e-01 lypma 5.116801e-01 30 20"
## [1548] "585 0.5292354 3.879051e-01 host_zero 5.138913e-01 30 12"
## [1549] "586 0.5431104 3.887447e-01 benzonase 5.141248e-01 30 19"
## [1550] "587 0.6505361 3.899582e-01 benzonase 5.148511e-01 30 16"
## [1551] "588 0.2760720 3.939324e-01 molysis 5.192136e-01 30 8"
## [1552] "589 0.5704730 3.960340e-01 lypma 5.202141e-01 30 17"
## [1553] "590 0.4646251 3.957136e-01 lypma 5.202141e-01 30 10"
## [1554] "591 0.5431104 3.977403e-01 lypma 5.215714e-01 30 19"
## [1555] "592 0.3119144 4.035109e-01 benzonase 5.282449e-01 30 16"
## [1556] "593 0.4989084 4.085554e-01 lypma 5.330478e-01 30 7"
## [1557] "594 0.2634630 4.082752e-01 benzonase 5.330478e-01 30 19"
## [1558] "595 0.7115955 4.112844e-01 qiaamp 5.352469e-01 30 7"
## [1559] "596 0.4610452 4.123127e-01 benzonase 5.352469e-01 30 14"
## [1560] "597 0.7002132 4.119020e-01 host_zero 5.352469e-01 30 11"
## [1561] "598 0.3823202 4.138671e-01 host_zero 5.354707e-01 30 11"
## [1562] "599 0.6744089 4.132280e-01 benzonase 5.354707e-01 30 15"
## [1563] "600 0.6007818 4.249537e-01 lypma 5.488985e-01 30 14"
## [1564] "601 0.5752405 4.261811e-01 benzonase 5.495680e-01 30 5"
## [1565] "602 0.4955104 4.296811e-01 lypma 5.531609e-01 30 14"
## [1566] "603 0.4137694 4.317163e-01 molysis 5.548593e-01 30 12"
## [1567] "604 0.5653022 4.343477e-01 host_zero 5.573171e-01 30 15"
## [1568] "605 0.5161944 4.433357e-01 qiaamp 5.679093e-01 30 16"
## [1569] "606 0.5434821 4.483699e-01 host_zero 5.734104e-01 30 11"
## [1570] "607 0.3002936 4.506324e-01 lypma 5.753543e-01 30 20"
## [1571] "608 0.6486736 4.595491e-01 qiaamp 5.842909e-01 30 7"
## [1572] "609 0.2690274 4.590183e-01 lypma 5.842909e-01 30 19"
## [1573] "610 0.5434821 4.606474e-01 lypma 5.842909e-01 30 11"
## [1574] "611 0.4866441 4.604247e-01 lypma 5.842909e-01 30 18"
## [1575] "612 0.5820709 4.641077e-01 qiaamp 5.877181e-01 30 7"
## [1576] "613 0.3655412 4.681852e-01 lypma 5.919143e-01 30 12"
## [1577] "614 0.4792329 4.736791e-01 qiaamp 5.978849e-01 30 6"
## [1578] "615 0.7148173 4.765541e-01 qiaamp 6.005357e-01 30 6"
## [1579] "616 0.4610452 4.777740e-01 lypma 6.010955e-01 30 14"
## [1580] "617 0.6021462 4.818550e-01 molysis 6.051742e-01 30 7"
## [1581] "618 0.5936749 4.833585e-01 lypma 6.051742e-01 30 9"
## [1582] "619 0.5880584 4.833281e-01 host_zero 6.051742e-01 30 10"
## [1583] "620 0.4562248 4.871502e-01 benzonase 6.089378e-01 30 13"
## [1584] "621 0.5765694 4.890171e-01 molysis 6.102870e-01 30 14"
## [1585] "622 0.5765694 4.917476e-01 host_zero 6.107442e-01 30 14"
## [1586] "623 0.4909809 4.913871e-01 molysis 6.107442e-01 30 5"
## [1587] "624 0.5724325 4.916211e-01 lypma 6.107442e-01 30 7"
## [1588] "625 0.2760720 4.957469e-01 host_zero 6.147262e-01 30 8"
## [1589] "626 0.6021462 4.992844e-01 host_zero 6.181236e-01 30 7"
## [1590] "627 0.3351582 5.009840e-01 benzonase 6.182525e-01 30 16"
## [1591] "628 0.5646422 5.004465e-01 benzonase 6.182525e-01 30 4"
## [1592] "629 0.3823202 5.048284e-01 molysis 6.192441e-01 30 11"
## [1593] "630 0.5292354 5.041420e-01 molysis 6.192441e-01 30 12"
## [1594] "631 0.4792329 5.049836e-01 lypma 6.192441e-01 30 6"
## [1595] "632 0.5449559 5.035349e-01 benzonase 6.192441e-01 30 4"
## [1596] "633 0.6262236 5.062816e-01 molysis 6.198550e-01 30 13"
## [1597] "634 0.6033618 5.095949e-01 lypma 6.219466e-01 30 7"
## [1598] "635 0.4700973 5.089076e-01 benzonase 6.219466e-01 30 17"
## [1599] "636 0.5653022 5.114550e-01 molysis 6.222569e-01 30 15"
## [1600] "637 0.4980128 5.109479e-01 lypma 6.222569e-01 30 7"
## [1601] "638 0.3102765 5.132259e-01 molysis 6.229322e-01 30 0"
## [1602] "639 0.3541369 5.141266e-01 molysis 6.229322e-01 30 0"
## [1603] "640 0.5509958 5.144214e-01 molysis 6.229322e-01 30 6"
## [1604] "641 0.3828601 5.155359e-01 lypma 6.233078e-01 30 3"
## [1605] "642 0.3913274 5.202125e-01 molysis 6.279824e-01 30 10"
## [1606] "643 0.3077962 5.270486e-01 lypma 6.352452e-01 30 19"
## [1607] "644 0.4070401 5.350245e-01 host_zero 6.438571e-01 30 3"
## [1608] "645 0.4239708 5.376701e-01 lypma 6.460378e-01 30 17"
## [1609] "646 0.7052852 5.391220e-01 benzonase 6.467795e-01 30 12"
## [1610] "647 0.6033618 5.424882e-01 host_zero 6.498119e-01 30 7"
## [1611] "648 0.5509958 5.466412e-01 host_zero 6.537761e-01 30 6"
## [1612] "649 0.4980128 5.499144e-01 benzonase 6.566775e-01 30 7"
## [1613] "650 0.6199624 5.543421e-01 host_zero 6.609463e-01 30 15"
## [1614] "651 0.4890149 5.612444e-01 qiaamp 6.681481e-01 30 15"
## [1615] "652 0.5261576 5.657093e-01 lypma 6.693507e-01 30 5"
## [1616] "653 0.5820709 5.652164e-01 lypma 6.693507e-01 30 7"
## [1617] "654 0.4175947 5.640972e-01 molysis 6.693507e-01 30 6"
## [1618] "655 0.5880584 5.653542e-01 qiaamp 6.693507e-01 30 10"
## [1619] "656 0.4331148 5.717290e-01 lypma 6.754420e-01 30 4"
## [1620] "657 0.4495403 5.734724e-01 qiaamp 6.754424e-01 30 10"
## [1621] "658 0.4254768 5.729294e-01 molysis 6.754424e-01 30 2"
## [1622] "659 0.2634630 5.756973e-01 lypma 6.770341e-01 30 19"
## [1623] "660 0.5695787 5.860088e-01 qiaamp 6.881164e-01 30 14"
## [1624] "661 0.4239708 5.892083e-01 benzonase 6.908267e-01 30 17"
## [1625] "662 0.5936749 5.944786e-01 benzonase 6.959530e-01 30 9"
## [1626] "663 0.5381643 5.956878e-01 benzonase 6.963168e-01 30 19"
## [1627] "664 0.4792329 6.001433e-01 molysis 6.994151e-01 30 6"
## [1628] "665 0.4766466 5.995539e-01 benzonase 6.994151e-01 30 9"
## [1629] "666 0.4700973 6.070878e-01 qiaamp 7.064460e-01 30 17"
## [1630] "667 0.4531446 6.124371e-01 benzonase 7.116023e-01 30 10"
## [1631] "668 0.5653022 6.140094e-01 benzonase 7.123612e-01 30 15"
## [1632] "669 0.4244041 6.151134e-01 lypma 7.125753e-01 30 5"
## [1633] "670 0.6007818 6.184320e-01 benzonase 7.153505e-01 30 14"
## [1634] "671 0.6199624 6.211043e-01 benzonase 7.173709e-01 30 15"
## [1635] "672 0.3100354 6.233405e-01 host_zero 7.188822e-01 30 29"
## [1636] "673 0.4442167 6.269821e-01 qiaamp 7.220076e-01 30 8"
## [1637] "674 0.5315065 6.306949e-01 molysis 7.247763e-01 30 7"
## [1638] "675 0.6007818 6.312568e-01 qiaamp 7.247763e-01 30 14"
## [1639] "676 0.4442167 6.358674e-01 molysis 7.273176e-01 30 8"
## [1640] "677 0.5014030 6.362856e-01 molysis 7.273176e-01 30 4"
## [1641] "678 0.5926787 6.345563e-01 lypma 7.273176e-01 30 6"
## [1642] "679 0.5926787 6.375375e-01 benzonase 7.276754e-01 30 6"
## [1643] "680 0.4175947 6.397516e-01 host_zero 7.291287e-01 30 6"
## [1644] "681 0.7071470 6.417327e-01 host_zero 7.303125e-01 30 15"
## [1645] "682 0.3823202 6.453110e-01 qiaamp 7.311638e-01 30 11"
## [1646] "683 0.4137694 6.447663e-01 host_zero 7.311638e-01 30 12"
## [1647] "684 0.6294977 6.444977e-01 lypma 7.311638e-01 30 10"
## [1648] "685 0.4475123 6.528486e-01 molysis 7.379053e-01 30 2"
## [1649] "686 0.4508224 6.531652e-01 lypma 7.379053e-01 30 7"
## [1650] "687 0.4646251 6.544129e-01 benzonase 7.381750e-01 30 10"
## [1651] "688 0.6262236 6.553089e-01 host_zero 7.381750e-01 30 13"
## [1652] "689 0.5894163 6.594350e-01 qiaamp 7.417448e-01 30 6"
## [1653] "690 0.3100354 6.620745e-01 qiaamp 7.436344e-01 30 29"
## [1654] "691 0.5894163 6.667275e-01 host_zero 7.476729e-01 30 6"
## [1655] "692 0.5798397 6.675996e-01 lypma 7.476729e-01 30 3"
## [1656] "693 0.4989084 6.691929e-01 molysis 7.483759e-01 30 7"
## [1657] "694 0.6486736 6.710366e-01 benzonase 7.493564e-01 30 7"
## [1658] "695 0.6199624 6.851084e-01 molysis 7.639698e-01 30 15"
## [1659] "696 0.5190056 6.887367e-01 benzonase 7.669122e-01 30 18"
## [1660] "697 0.6301492 6.912473e-01 benzonase 7.686036e-01 30 15"
## [1661] "698 0.4107313 7.001752e-01 benzonase 7.774151e-01 30 21"
## [1662] "699 0.4890149 7.055315e-01 lypma 7.822417e-01 30 15"
## [1663] "700 0.5172034 7.066378e-01 molysis 7.823490e-01 30 17"
## [1664] "701 0.6033618 7.130785e-01 molysis 7.883536e-01 30 7"
## [1665] "702 0.6505361 7.268407e-01 lypma 8.010314e-01 30 16"
## [1666] "703 0.5269956 7.267009e-01 molysis 8.010314e-01 30 4"
## [1667] "704 0.3913274 7.286801e-01 host_zero 8.010314e-01 30 10"
## [1668] "705 0.3655412 7.278667e-01 molysis 8.010314e-01 30 12"
## [1669] "706 0.4890149 7.329108e-01 host_zero 8.016492e-01 30 15"
## [1670] "707 0.3913274 7.342061e-01 benzonase 8.016492e-01 30 10"
## [1671] "708 0.4770693 7.323080e-01 lypma 8.016492e-01 30 5"
## [1672] "709 0.4700973 7.340581e-01 host_zero 8.016492e-01 30 17"
## [1673] "710 0.4803488 7.344141e-01 lypma 8.016492e-01 30 5"
## [1674] "711 0.7071470 7.403234e-01 lypma 8.063750e-01 30 15"
## [1675] "712 0.7052852 7.408245e-01 lypma 8.063750e-01 30 12"
## [1676] "713 0.4281553 7.483602e-01 benzonase 8.122957e-01 30 17"
## [1677] "714 0.5820709 7.478768e-01 host_zero 8.122957e-01 30 7"
## [1678] "715 0.5509958 7.558576e-01 lypma 8.192863e-01 30 6"
## [1679] "716 0.5695787 7.577594e-01 benzonase 8.202005e-01 30 14"
## [1680] "717 0.3655412 7.635020e-01 qiaamp 8.252636e-01 30 12"
## [1681] "718 0.5086215 7.684080e-01 host_zero 8.294098e-01 30 20"
## [1682] "719 0.3220743 7.748074e-01 molysis 8.345840e-01 30 0"
## [1683] "720 0.7071470 7.753555e-01 molysis 8.345840e-01 30 15"
## [1684] "721 0.6301492 7.783354e-01 lypma 8.366296e-01 30 15"
## [1685] "722 0.4998426 7.876486e-01 molysis 8.454676e-01 30 7"
## [1686] "723 0.3077962 7.917106e-01 benzonase 8.486525e-01 30 19"
## [1687] "724 0.5434821 7.953630e-01 benzonase 8.513900e-01 30 11"
## [1688] "725 0.5704730 8.052789e-01 benzonase 8.608154e-01 30 17"
## [1689] "726 0.6323684 8.081432e-01 benzonase 8.626873e-01 30 8"
## [1690] "727 0.5161944 8.117651e-01 lypma 8.653617e-01 30 16"
## [1691] "728 0.3725226 8.159069e-01 molysis 8.685823e-01 30 6"
## [1692] "729 0.5704730 8.170705e-01 host_zero 8.686277e-01 30 17"
## [1693] "730 0.7071470 8.235442e-01 benzonase 8.743106e-01 30 15"
## [1694] "731 0.4955104 8.264549e-01 benzonase 8.762005e-01 30 14"
## [1695] "732 0.5488254 8.313270e-01 benzonase 8.789610e-01 30 15"
## [1696] "733 0.4792329 8.310544e-01 host_zero 8.789610e-01 30 6"
## [1697] "734 0.6199624 8.358922e-01 qiaamp 8.825838e-01 30 15"
## [1698] "735 0.5880584 8.378456e-01 lypma 8.834427e-01 30 10"
## [1699] "736 0.7920747 8.502198e-01 benzonase 8.928460e-01 30 11"
## [1700] "737 0.6262236 8.493150e-01 qiaamp 8.928460e-01 30 13"
## [1701] "738 0.5292354 8.490212e-01 lypma 8.928460e-01 30 12"
## [1702] "739 0.6486736 8.570639e-01 molysis 8.986627e-01 30 7"
## [1703] "740 0.6294977 8.580779e-01 benzonase 8.986627e-01 30 10"
## [1704] "741 0.6744089 8.602751e-01 qiaamp 8.997479e-01 30 15"
## [1705] "742 0.5765694 8.658164e-01 lypma 9.043230e-01 30 14"
## [1706] "743 0.7920747 8.766440e-01 host_zero 9.129262e-01 30 11"
## [1707] "744 0.7920747 8.787651e-01 qiaamp 9.129262e-01 30 11"
## [1708] "745 0.2342764 8.776527e-01 lypma 9.129262e-01 30 11"
## [1709] "746 0.6262236 8.769466e-01 benzonase 9.129262e-01 30 13"
## [1710] "747 0.7562160 8.849073e-01 benzonase 9.180765e-01 30 10"
## [1711] "748 0.5012314 8.874204e-01 benzonase 9.194530e-01 30 10"
## [1712] "749 0.4442167 8.910275e-01 host_zero 9.219576e-01 30 8"
## [1713] "750 0.4610452 8.929630e-01 molysis 9.227284e-01 30 14"
## [1714] "751 0.4508224 9.077589e-01 benzonase 9.367685e-01 30 7"
## [1715] "752 0.4531446 9.108641e-01 lypma 9.372077e-01 30 10"
## [1716] "753 0.4700973 9.095856e-01 molysis 9.372077e-01 30 17"
## [1717] "754 0.3655412 9.118124e-01 host_zero 9.372077e-01 30 12"
## [1718] "755 0.4070401 9.182698e-01 molysis 9.425948e-01 30 3"
## [1719] "756 0.4254768 9.231331e-01 qiaamp 9.463336e-01 30 2"
## [1720] "757 0.6744089 9.247769e-01 molysis 9.467663e-01 30 15"
## [1721] "758 0.7920747 9.287279e-01 molysis 9.495569e-01 30 11"
## [1722] "759 0.3913274 9.385363e-01 lypma 9.570601e-01 30 10"
## [1723] "760 0.5313621 9.380835e-01 benzonase 9.570601e-01 30 7"
## [1724] "761 0.4495403 9.462958e-01 host_zero 9.637047e-01 30 10"
## [1725] "762 0.4107313 9.555617e-01 lypma 9.707182e-01 30 21"
## [1726] "763 0.5752405 9.556877e-01 lypma 9.707182e-01 30 5"
## [1727] "764 0.6007818 9.598257e-01 host_zero 9.736452e-01 30 14"
## [1728] "765 0.4137694 9.611851e-01 benzonase 9.737496e-01 30 12"
## [1729] "766 0.6262236 9.682143e-01 lypma 9.763298e-01 30 13"
## [1730] "767 0.7119629 9.687712e-01 lypma 9.763298e-01 30 12"
## [1731] "768 0.4955104 9.686843e-01 molysis 9.763298e-01 30 14"
## [1732] "769 0.5381643 9.673686e-01 lypma 9.763298e-01 30 19"
## [1733] "770 0.5724325 9.708961e-01 benzonase 9.772006e-01 30 7"
## [1734] "771 0.3913274 9.863068e-01 qiaamp 9.914238e-01 30 10"
## [1735] "772 0.5932556 9.887505e-01 host_zero 9.925928e-01 30 18"
## [1736] "773 0.7119629 9.956042e-01 benzonase 9.968905e-01 30 12"
## [1737] "774 0.7119629 9.952389e-01 host_zero 9.968905e-01 30 12"
## [1738] "775 0.3655412 9.988198e-01 benzonase 9.988198e-01 30 12"
## [1739] ""
## [1740] "$residuals"
## [1741] " CFB_e_qiaamp CFB_e_molysis CFB_e_lyPMA"
## [1742] "Actinobaculum_sp_oral_taxon_183 1.668272803 3.0288128892 -2.35831641"
## [1743] "Actinomyces_georgiae -3.138540262 -1.4788085032 0.26748020"
## [1744] "Actinomyces_graevenitzii 0.564818382 0.1044318634 0.79703712"
## [1745] "Actinomyces_hongkongensis -2.901457805 -1.5072515838 0.27185996"
## [1746] "Actinomyces_johnsonii 0.980608625 0.7482691098 -2.49099469"
## [1747] "Actinomyces_massiliensis 1.944056060 -0.8757042215 -0.28208215"
## [1748] "Actinomyces_meyeri 1.645444959 0.2081899562 -0.45091972"
## [1749] "Actinomyces_naeslundii -0.146470491 -0.0557290590 -0.29377143"
## [1750] "Actinomyces_odontolyticus -0.225038966 -0.7421615469 1.14302958"
## [1751] "Actinomyces_oris 0.312726875 0.1189675400 2.70078640"
## [1752] "Actinomyces_sp_HMSC035G02 -0.244258666 -0.8352093944 0.94644569"
## [1753] "Actinomyces_sp_HPA0247 0.114033117 -0.6141507342 1.82140429"
## [1754] "Actinomyces_sp_ICM47 0.197434856 -0.1442618339 2.29832305"
## [1755] "Actinomyces_sp_S6_Spd3 0.779882407 -0.1598797507 -3.35713912"
## [1756] "Actinomyces_sp_oral_taxon_170 -0.535595590 0.0109334460 0.75005073"
## [1757] "Actinomyces_sp_oral_taxon_180 -0.618039215 -0.6977813477 -0.86422811"
## [1758] "Actinomyces_sp_oral_taxon_181 -0.012036693 0.0498695332 -3.60243089"
## [1759] "Actinomyces_sp_oral_taxon_414 -1.057310488 0.5222143108 -0.07729065"
## [1760] "Actinomyces_sp_oral_taxon_448 -2.022365376 2.7834651716 -1.08926456"
## [1761] "Actinomyces_sp_oral_taxon_897 2.415285037 3.2606611402 -1.13522590"
## [1762] "Actinomyces_viscosus 0.162961897 0.7562422383 3.94897826"
## [1763] "Aeriscardovia_aeriphila 0.145676586 -0.0751869277 1.55383212"
## [1764] "Alloscardovia_omnicolens 0.419066052 0.3925235820 -0.68014998"
## [1765] "Bifidobacterium_dentium -2.209900141 0.6198177796 -0.13337161"
## [1766] "Bifidobacterium_longum 3.247766161 1.4933133810 -3.46408059"
## [1767] "Scardovia_wiggsiae -0.139835704 -0.1097544728 -2.44461971"
## [1768] "Corynebacterium_atypicum -0.983000310 1.6231089416 0.17957469"
## [1769] "Corynebacterium_durum -0.111220533 -0.3326319570 -1.63197015"
## [1770] "Corynebacterium_matruchotii -1.573693712 0.3347308345 -0.72262751"
## [1771] "Rothia_aeria 1.411690610 -0.3486514717 -0.88036253"
## [1772] "Rothia_dentocariosa -0.179294047 -0.2942222600 0.25129258"
## [1773] "Rothia_mucilaginosa 0.646826837 -0.3650471664 0.17684542"
## [1774] "Cutibacterium_acnes 3.173643212 -0.5370241564 0.20037388"
## [1775] "Propionibacterium_acidifaciens 2.391639303 2.3870593638 -0.55135866"
## [1776] "Pseudopropionibacterium_propionicum 0.077506692 0.0973595332 -2.38752518"
## [1777] "Atopobium_deltae -1.536075183 1.6601352157 -0.39270311"
## [1778] "Atopobium_parvulum -0.355039287 -0.4157170328 0.45141791"
## [1779] "Atopobium_rimae -0.817708937 -1.0715159387 -2.78816916"
## [1780] "Olsenella_profusa 1.370326502 0.3438748882 -2.31353394"
## [1781] "Olsenella_scatoligenes -1.022989130 -0.3880764020 -1.01636232"
## [1782] "Olsenella_uli 1.048458591 0.9802418576 -1.50765505"
## [1783] "Collinsella_aerofaciens -0.630862665 -0.5772787486 -2.23012884"
## [1784] "Collinsella_intestinalis 0.977420703 0.0177065001 -1.36828688"
## [1785] "Collinsella_stercoris 0.584917710 -0.2577094944 -0.54361877"
## [1786] "Enorma_massiliensis 0.254791963 -0.3907702395 -0.46811050"
## [1787] "X.Collinsella._massiliensis -0.019977754 -0.2237969060 -1.05154241"
## [1788] "Asaccharobacter_celatus 1.527782548 -0.3372028034 0.15137587"
## [1789] "Denitrobacterium_detoxificans 0.232026333 0.4694540058 0.20037388"
## [1790] "Enterorhabdus_caecimuris 1.257728648 -0.1690935797 -0.05544464"
## [1791] "Slackia_exigua 0.050644290 0.1769403109 -1.50930523"
## [1792] "Slackia_isoflavoniconvertens -0.968652694 -0.1928943352 -0.92658404"
## [1793] "Rubrobacter_radiotolerans -1.210387410 0.8533046163 0.10639173"
## [1794] "Thermoleophilum_album 0.908035835 -0.3928874428 3.12279971"
## [1795] "Porphyromonas_endodontalis 2.415233722 2.0009660165 0.79632897"
## [1796] "Porphyromonas_somerae 2.171429183 -0.2390068111 1.48311826"
## [1797] "Prevotella_histicola 1.611826266 4.1268334129 0.91463947"
## [1798] "Prevotella_melaninogenica 1.029889027 -0.0840879686 1.26431239"
## [1799] "Kouleothrix_aurantiaca -1.213447660 1.1280939229 0.24261132"
## [1800] "Hydrogenibacillus_schlegelii 3.197394555 1.2829334205 -0.62475721"
## [1801] "Gemella_bergeri 0.419040486 0.1177996999 -1.22819160"
## [1802] "Gemella_haemolysans -0.078700090 0.0407636020 1.04031907"
## [1803] "Gemella_morbillorum 0.286851338 -0.5382722913 0.72012967"
## [1804] "Gemella_sanguinis -0.010364772 -0.4804561454 0.26906579"
## [1805] "Brochothrix_campestris -1.128190330 -0.3252157202 1.04575938"
## [1806] "Staphylococcus_argenteus -2.943608558 -3.9156370888 -0.01242238"
## [1807] "Staphylococcus_aureus -4.371137683 2.6179227799 -1.43278575"
## [1808] "Staphylococcus_epidermidis -1.862701879 2.9171973283 -1.41398299"
## [1809] "Staphylococcus_schweitzeri -3.182949338 -4.0270020343 3.02688605"
## [1810] "Abiotrophia_defectiva 0.141584473 -0.8229193470 1.31764130"
## [1811] "Abiotrophia_sp_HMSC24B09 0.805327164 -1.0787231133 1.19694454"
## [1812] "Granulicatella_adiacens 0.007452286 0.4417413360 2.04574339"
## [1813] "Granulicatella_elegans 0.084797865 -0.2982845602 1.16067564"
## [1814] "Enterococcus_faecalis -2.500959667 6.0989185121 -0.61662025"
## [1815] "Lactobacillus_rhamnosus 3.256324215 2.2619578715 -0.97041352"
## [1816] "Streptococcus_anginosus -0.064288247 -1.0585267062 0.36755633"
## [1817] "Streptococcus_australis 1.298431290 0.0218064940 1.93215114"
## [1818] "Streptococcus_cristatus -3.754107523 1.9458525563 -0.29476886"
## [1819] "Streptococcus_gordonii -0.340510718 -0.3546156657 0.51261358"
## [1820] "Streptococcus_infantis 0.528531446 0.1155858351 1.00383063"
## [1821] "Streptococcus_milleri 1.251190882 2.3109559442 1.22057546"
## [1822] "Streptococcus_mitis 0.477323648 0.0746181974 0.64636867"
## [1823] "Streptococcus_oralis 0.613870613 0.3796283763 2.17708563"
## [1824] "Streptococcus_parasanguinis 0.147119529 -0.3954710614 0.54936590"
## [1825] "Streptococcus_peroris 1.546492191 -0.9808145415 -3.64818098"
## [1826] "Streptococcus_pneumoniae 5.798743629 -1.0486864829 -3.28361541"
## [1827] "Streptococcus_pseudopneumoniae 0.707253598 -0.1178710669 3.98692869"
## [1828] "Streptococcus_salivarius 0.162877271 -0.3971871262 1.52953506"
## [1829] "Streptococcus_sanguinis 1.309819087 -0.1899406773 0.92384846"
## [1830] "Streptococcus_sp_A12 0.386282177 0.5061627651 -1.72465896"
## [1831] "Streptococcus_sp_F0442 0.580659037 -0.2330608913 0.95615095"
## [1832] "Streptococcus_sp_HMSC034E03 -1.579744418 0.1816983802 -1.15470564"
## [1833] "Streptococcus_sp_HMSC067H01 -1.799222851 -0.2422582034 -0.58359933"
## [1834] "Streptococcus_sp_HMSC071D03 -2.377074791 -0.2095274546 -0.84542410"
## [1835] "Streptococcus_sp_HPH0090 1.499275271 -0.6344281303 -2.95334908"
## [1836] "Streptococcus_sp_M334 0.612693737 0.2494246735 0.83221249"
## [1837] "Streptococcus_vestibularis 0.160271513 0.2622886263 -2.67275876"
## [1838] "Eubacterium_brachy 0.802349722 -0.5357466422 2.45417045"
## [1839] "Eubacterium_infirmum -0.445666176 -1.3368443521 0.20037388"
## [1840] "Eubacterium_nodatum 2.339070412 2.3635050185 -2.93831422"
## [1841] "Eubacterium_sulci 0.501872883 1.0674789131 -1.50893527"
## [1842] "Mogibacterium_diversum 0.247958644 -0.2053810213 -0.54424241"
## [1843] "Mogibacterium_pumilum 0.551234652 -0.2276727894 0.49486710"
## [1844] "Mogibacterium_timidum 2.281318106 0.2751576842 -0.49390708"
## [1845] "Lachnoanaerobaculum_saburreum 1.226064557 -0.5275333344 0.99796047"
## [1846] "Oribacterium_parvum -1.275640250 1.6320890091 -1.10660522"
## [1847] "Oribacterium_sinus 1.426214240 1.6771660000 -2.80145194"
## [1848] "Oribacterium_sp_oral_taxon_078 4.090688837 0.8953367809 -0.18958458"
## [1849] "Stomatobaculum_longum 0.112281795 1.5293318450 -2.84086493"
## [1850] "Peptostreptococcus_stomatis -0.752197359 0.9563703042 -1.44706841"
## [1851] "Bulleidia_extructa 0.407001336 -0.2792120537 1.71321305"
## [1852] "Solobacterium_moorei -0.496567301 -0.4494242095 1.78163609"
## [1853] "Limnochorda_pilosa 0.010103520 -0.5813143248 3.91048139"
## [1854] "Veillonella_atypica -0.090607422 -0.0777948462 -2.41612353"
## [1855] "Veillonella_dispar 1.320073235 0.1172507594 0.78530120"
## [1856] "Veillonella_infantium -1.165543332 0.5599476489 1.26061548"
## [1857] "Veillonella_parvula 3.202487423 0.5371180526 2.92646945"
## [1858] "Veillonella_sp_T11011_6 -0.749514963 1.7561967654 -1.65701504"
## [1859] "Parvimonas_micra -0.534475104 -0.5688748482 1.78014900"
## [1860] "Parvimonas_sp_oral_taxon_110 1.769131491 2.5406079301 -1.24786127"
## [1861] "Parvimonas_sp_oral_taxon_393 0.001976274 0.3996306242 -1.60298560"
## [1862] "Fusobacterium_nucleatum -2.429747069 -1.5322507313 -0.72066015"
## [1863] "Leptotrichia_wadei 0.469732769 1.8424946390 -2.06172576"
## [1864] "Gemmata_obscuriglobus -2.583118404 -0.0943157296 0.20037388"
## [1865] "Paludisphaera_borealis 2.537898353 0.3545331544 4.82579954"
## [1866] "Achromobacter_xylosoxidans -0.526749336 -0.3950445234 1.24747549"
## [1867] "Cupriavidus_sp 0.433592643 -0.5677912258 2.07282828"
## [1868] "Sutterella_parvirubra -1.086225524 -0.6554297771 3.19697880"
## [1869] "Anaerobiospirillum_thomasii -1.490314164 0.2097975127 0.20037388"
## [1870] "Cardiobacterium_hominis -1.617581197 1.7474997333 -1.33479515"
## [1871] "Cardiobacterium_valvarum -1.620768978 2.1622421779 -1.34534053"
## [1872] "Alkalilimnicola_ehrlichii 0.569118269 -2.8903472180 4.22076527"
## [1873] "Escherichia_coli 0.199926521 0.0007637664 0.49180097"
## [1874] "Thiohalorhabdus_denitrificans -0.274532311 0.3968086941 2.77535028"
## [1875] "Pseudomonas_aeruginosa 0.402534170 0.1090095640 1.34537913"
## [1876] "Acholeplasma_oculi -0.282482426 -0.8776446966 0.47014897"
## [1877] "Candida_parapsilosis -1.082864852 4.3090261818 -0.73368053"
## [1878] "Nakamurella_silvestris -1.227688969 0.1885496298 0.20679222"
## [1879] "Prevotella_jejuni -0.256949664 -2.5051335615 -1.06360990"
## [1880] "Prevotella_pallens -0.834645445 -2.2631867579 -0.96879224"
## [1881] "Prevotella_salivae -1.373267449 -2.2884974841 -0.83854591"
## [1882] "Tannerella_sp_oral_taxon_HOT_286 -0.140091714 -0.9308514387 -1.42761659"
## [1883] "Capnocytophaga_gingivalis -4.456413377 -0.6094289620 -0.15310540"
## [1884] "Lactobacillus_gasseri 0.198484320 -2.6311230321 0.58664019"
## [1885] "Sharpea_azabuensis -0.708584765 -4.3347205369 0.38184879"
## [1886] "Streptococcus_mutans -1.155486462 -4.6492420421 1.40081586"
## [1887] "Oribacterium_asaccharolyticum -1.810017113 -2.1432912556 1.20034345"
## [1888] "Megasphaera_micronuciformis -0.083103744 -1.9396816521 0.84708240"
## [1889] "Neisseria_flavescens 2.135912196 -1.6126435500 -1.20094562"
## [1890] "Neisseria_subflava 1.562826405 -1.8755190521 0.36202646"
## [1891] "Stenotrophomonas_maltophilia 0.022211413 -0.3774831730 0.99258133"
## [1892] "Stenotrophomonas_pavanii -0.800921495 0.1198769759 2.40581756"
## [1893] "Stenotrophomonas_rhizophila -0.920877881 0.2815406482 1.50356308"
## [1894] "Streptococcus_sobrinus -1.792964354 -2.7554427889 1.94969688"
## [1895] "Eggerthia_catenaformis -1.518340590 1.3568221345 0.77192172"
## [1896] "Haemophilus_parainfluenzae -0.094113577 -1.2329689694 1.00617419"
## [1897] " CFB_e_host_zero CFB_e_control"
## [1898] "Actinobaculum_sp_oral_taxon_183 0.876104687 -2.43533292"
## [1899] "Actinomyces_georgiae 1.052608816 0.19046369"
## [1900] "Actinomyces_graevenitzii -0.611958023 -2.61161874"
## [1901] "Actinomyces_hongkongensis 0.408000674 0.19484345"
## [1902] "Actinomyces_johnsonii -0.010309808 -1.13992060"
## [1903] "Actinomyces_massiliensis -0.151215011 -0.35909866"
## [1904] "Actinomyces_meyeri -0.195037187 0.32176281"
## [1905] "Actinomyces_naeslundii -0.797728813 -0.37078794"
## [1906] "Actinomyces_odontolyticus -1.406602880 1.53091511"
## [1907] "Actinomyces_oris -0.995299856 -0.94606413"
## [1908] "Actinomyces_sp_HMSC035G02 -1.078616673 -0.84951089"
## [1909] "Actinomyces_sp_HPA0247 -0.753322546 -1.75992520"
## [1910] "Actinomyces_sp_ICM47 -0.283743832 -1.35339107"
## [1911] "Actinomyces_sp_S6_Spd3 -0.314688745 1.60098611"
## [1912] "Actinomyces_sp_oral_taxon_170 -0.858338065 0.67303422"
## [1913] "Actinomyces_sp_oral_taxon_180 -1.016611239 0.12335737"
## [1914] "Actinomyces_sp_oral_taxon_181 -0.387286492 1.42602461"
## [1915] "Actinomyces_sp_oral_taxon_414 1.599164103 -0.15430716"
## [1916] "Actinomyces_sp_oral_taxon_448 2.060029785 0.05909276"
## [1917] "Actinomyces_sp_oral_taxon_897 2.344719737 -1.21224241"
## [1918] "Actinomyces_viscosus 1.048111510 -3.61529045"
## [1919] "Aeriscardovia_aeriphila -0.991910540 -0.11431431"
## [1920] "Alloscardovia_omnicolens 0.240730611 -0.75716649"
## [1921] "Bifidobacterium_dentium 1.273572930 0.71460644"
## [1922] "Bifidobacterium_longum 2.816649107 -3.54109710"
## [1923] "Scardovia_wiggsiae -0.460801287 1.64787324"
## [1924] "Corynebacterium_atypicum 0.894464509 0.10255818"
## [1925] "Corynebacterium_durum -0.222166160 -0.37432707"
## [1926] "Corynebacterium_matruchotii 1.635733025 0.16761236"
## [1927] "Rothia_aeria -1.076331309 0.75009853"
## [1928] "Rothia_dentocariosa -1.405989037 1.93820170"
## [1929] "Rothia_mucilaginosa -0.929850165 1.73669841"
## [1930] "Cutibacterium_acnes -0.874451006 0.12335737"
## [1931] "Propionibacterium_acidifaciens 0.318692787 -0.62837518"
## [1932] "Pseudopropionibacterium_propionicum -0.496288353 0.52351367"
## [1933] "Atopobium_deltae 2.545228669 -0.46971963"
## [1934] "Atopobium_parvulum -0.721784944 -0.90838312"
## [1935] "Atopobium_rimae -1.105284000 0.26920453"
## [1936] "Olsenella_profusa 0.205344720 -0.84895815"
## [1937] "Olsenella_scatoligenes -0.796621228 0.40683759"
## [1938] "Olsenella_uli 0.602927606 0.19108366"
## [1939] "Collinsella_aerofaciens -0.748832998 0.12335737"
## [1940] "Collinsella_intestinalis -0.158743759 0.49443160"
## [1941] "Collinsella_stercoris -0.239414682 0.52012121"
## [1942] "Enorma_massiliensis -0.597262912 0.28349994"
## [1943] "X.Collinsella._massiliensis -0.884609379 0.12335737"
## [1944] "Asaccharobacter_celatus 0.746050066 0.07435936"
## [1945] "Denitrobacterium_detoxificans 0.805508011 0.12335737"
## [1946] "Enterorhabdus_caecimuris 1.349116054 -0.13246115"
## [1947] "Slackia_exigua -0.404989616 -0.07295605"
## [1948] "Slackia_isoflavoniconvertens -0.723692228 0.12335737"
## [1949] "Rubrobacter_radiotolerans 1.698468141 0.02937521"
## [1950] "Thermoleophilum_album 0.135206503 -0.44546003"
## [1951] "Porphyromonas_endodontalis -0.601728535 -3.31555885"
## [1952] "Porphyromonas_somerae -0.648469666 -2.12864065"
## [1953] "Prevotella_histicola -0.156934870 -5.27259639"
## [1954] "Prevotella_melaninogenica -0.909009574 -0.24111168"
## [1955] "Kouleothrix_aurantiaca 1.518291815 0.16559481"
## [1956] "Hydrogenibacillus_schlegelii 0.661489560 -0.70177372"
## [1957] "Gemella_bergeri -0.140760124 0.12335737"
## [1958] "Gemella_haemolysans -0.843507678 -0.13835838"
## [1959] "Gemella_morbillorum -0.527279417 0.12335737"
## [1960] "Gemella_sanguinis -1.100898081 0.96303114"
## [1961] "Brochothrix_campestris -3.085309249 0.96874287"
## [1962] "Staphylococcus_argenteus 0.994496893 5.38414744"
## [1963] "Staphylococcus_aureus 0.894821351 3.27255735"
## [1964] "Staphylococcus_epidermidis 1.892565873 0.10853312"
## [1965] "Staphylococcus_schweitzeri -4.475882236 4.35902485"
## [1966] "Abiotrophia_defectiva -1.277769983 1.24062479"
## [1967] "Abiotrophia_sp_HMSC24B09 -1.230657048 1.11992802"
## [1968] "Granulicatella_adiacens -0.473676188 -0.73383462"
## [1969] "Granulicatella_elegans -0.980917136 -0.03236386"
## [1970] "Enterococcus_faecalis 2.909160556 -0.69363677"
## [1971] "Lactobacillus_rhamnosus 1.442941171 -1.04743004"
## [1972] "Streptococcus_anginosus -0.863368287 0.12335737"
## [1973] "Streptococcus_australis -0.672867059 -0.37108453"
## [1974] "Streptococcus_cristatus 1.374938845 1.59766155"
## [1975] "Streptococcus_gordonii -1.393338749 2.46915929"
## [1976] "Streptococcus_infantis -0.365118635 -0.82019354"
## [1977] "Streptococcus_milleri -0.956817193 -3.17182889"
## [1978] "Streptococcus_mitis -0.206696102 1.75256245"
## [1979] "Streptococcus_oralis -0.558954908 3.47500537"
## [1980] "Streptococcus_parasanguinis -0.737492080 -0.29415149"
## [1981] "Streptococcus_peroris -0.390219894 0.77735658"
## [1982] "Streptococcus_pneumoniae 1.808850737 -1.39898344"
## [1983] "Streptococcus_pseudopneumoniae -0.522908876 -1.21418446"
## [1984] "Streptococcus_salivarius 0.125934051 -3.18055471"
## [1985] "Streptococcus_sanguinis 0.373633585 -2.34174337"
## [1986] "Streptococcus_sp_A12 -0.279230211 1.64709965"
## [1987] "Streptococcus_sp_F0442 -0.586594886 -0.69042043"
## [1988] "Streptococcus_sp_HMSC034E03 1.482351396 2.04194703"
## [1989] "Streptococcus_sp_HMSC067H01 2.074930585 1.23995630"
## [1990] "Streptococcus_sp_HMSC071D03 0.286623612 0.65545122"
## [1991] "Streptococcus_sp_HPH0090 0.790064929 -0.02795603"
## [1992] "Streptococcus_sp_M334 0.834118294 -2.84637482"
## [1993] "Streptococcus_vestibularis 1.277414283 0.47665774"
## [1994] "Eubacterium_brachy 0.131460070 -2.27886795"
## [1995] "Eubacterium_infirmum 0.750584229 0.12335737"
## [1996] "Eubacterium_nodatum 2.815062482 -3.01533073"
## [1997] "Eubacterium_sulci 1.003669063 -1.28717087"
## [1998] "Mogibacterium_diversum -0.414047914 -0.55699484"
## [1999] "Mogibacterium_pumilum 0.500455348 0.41785059"
## [2000] "Mogibacterium_timidum 1.604448389 -0.57092359"
## [2001] "Lachnoanaerobaculum_saburreum 1.487172494 -1.00055393"
## [2002] "Oribacterium_parvum 2.269956368 0.18384483"
## [2003] "Oribacterium_sinus 0.873697626 1.81926302"
## [2004] "Oribacterium_sp_oral_taxon_078 0.293298979 -0.26660109"
## [2005] "Stomatobaculum_longum -1.783234265 0.42254179"
## [2006] "Peptostreptococcus_stomatis -0.518104662 -0.36793622"
## [2007] "Bulleidia_extructa -0.358799140 -2.22565325"
## [2008] "Solobacterium_moorei -0.782359488 0.09857055"
## [2009] "Limnochorda_pilosa -1.080904858 -0.35568869"
## [2010] "Veillonella_atypica 0.988610163 -2.33367511"
## [2011] "Veillonella_dispar 1.118191492 -3.78887702"
## [2012] "Veillonella_infantium 3.686325876 -0.78915049"
## [2013] "Veillonella_parvula 1.012537241 -3.73296820"
## [2014] "Veillonella_sp_T11011_6 3.640615967 -0.47596345"
## [2015] "Parvimonas_micra 0.598515131 -1.06874851"
## [2016] "Parvimonas_sp_oral_taxon_110 0.360805152 -0.18680590"
## [2017] "Parvimonas_sp_oral_taxon_393 0.913042781 -0.35705699"
## [2018] "Fusobacterium_nucleatum 2.982244733 0.12335737"
## [2019] "Leptotrichia_wadei -1.114100305 0.56412584"
## [2020] "Gemmata_obscuriglobus 1.888577956 0.12335737"
## [2021] "Paludisphaera_borealis 0.583461579 0.03768066"
## [2022] "Achromobacter_xylosoxidans -1.036157973 -0.30145111"
## [2023] "Cupriavidus_sp -1.049120203 0.12335737"
## [2024] "Sutterella_parvirubra 0.005611918 0.12335737"
## [2025] "Anaerobiospirillum_thomasii 0.576263007 0.12335737"
## [2026] "Cardiobacterium_hominis 2.395747884 0.18832529"
## [2027] "Cardiobacterium_valvarum 2.226385271 -0.04322051"
## [2028] "Alkalilimnicola_ehrlichii -0.543476024 3.11868542"
## [2029] "Escherichia_coli -1.538985422 0.56864346"
## [2030] "Thiohalorhabdus_denitrificans -2.207431735 2.02251868"
## [2031] "Pseudomonas_aeruginosa -1.549233440 0.59873264"
## [2032] "Acholeplasma_oculi -0.049721753 0.39313245"
## [2033] "Candida_parapsilosis -2.777718432 1.14002185"
## [2034] "Nakamurella_silvestris 0.465844621 0.12977571"
## [2035] "Prevotella_jejuni 3.704590258 -0.16255659"
## [2036] "Prevotella_pallens 4.996201713 -0.97659357"
## [2037] "Prevotella_salivae 2.172322836 -0.83463489"
## [2038] "Tannerella_sp_oral_taxon_HOT_286 1.104404139 1.41085360"
## [2039] "Capnocytophaga_gingivalis 1.234348405 1.48432797"
## [2040] "Lactobacillus_gasseri -1.425075636 1.97386138"
## [2041] "Sharpea_azabuensis -0.104919501 0.30483228"
## [2042] "Streptococcus_mutans -3.221840984 4.65085999"
## [2043] "Oribacterium_asaccharolyticum 1.207318004 1.12332694"
## [2044] "Megasphaera_micronuciformis 1.931135112 0.62052785"
## [2045] "Neisseria_flavescens -2.669008771 3.73640127"
## [2046] "Neisseria_subflava -1.602301433 1.69707109"
## [2047] "Stenotrophomonas_maltophilia -3.229196868 2.89286061"
## [2048] "Stenotrophomonas_pavanii -4.247213969 0.94348564"
## [2049] "Stenotrophomonas_rhizophila -2.586065642 1.38440488"
## [2050] "Streptococcus_sobrinus -3.398889357 1.87268036"
## [2051] "Eggerthia_catenaformis -3.594760951 1.97628120"
## [2052] "Haemophilus_parainfluenzae -2.056406791 -0.15047486"
## [2053] " CFB_e_benzonase CFB_d_qiaamp CFB_d_molysis"
## [2054] "Actinobaculum_sp_oral_taxon_183 2.37013295 -2.08895063 -5.3846774580"
## [2055] "Actinomyces_georgiae 0.09820141 -1.67985951 1.2915702532"
## [2056] "Actinomyces_graevenitzii 1.61552959 1.06668856 0.9858070823"
## [2057] "Actinomyces_hongkongensis 0.10258117 -1.44862713 1.0827467282"
## [2058] "Actinomyces_johnsonii 3.20216863 1.69410182 1.7553249644"
## [2059] "Actinomyces_massiliensis 1.99178119 -3.42452304 0.4216436209"
## [2060] "Actinomyces_meyeri -2.30483277 -2.81667384 0.2487730685"
## [2061] "Actinomyces_naeslundii 4.52676808 0.43994785 0.7204386098"
## [2062] "Actinomyces_odontolyticus 1.29189859 1.51801715 1.1563419883"
## [2063] "Actinomyces_oris 0.57782015 1.37416070 0.6119959596"
## [2064] "Actinomyces_sp_HMSC035G02 1.22952810 1.25091827 0.8178216239"
## [2065] "Actinomyces_sp_HPA0247 0.93617800 0.81198262 0.6715933049"
## [2066] "Actinomyces_sp_ICM47 1.84544673 1.08738892 0.3819149769"
## [2067] "Actinomyces_sp_S6_Spd3 0.25625289 0.40113257 0.1739223071"
## [2068] "Actinomyces_sp_oral_taxon_170 -0.63521469 0.87714843 0.7566045418"
## [2069] "Actinomyces_sp_oral_taxon_180 1.77441355 0.79609922 1.1590960168"
## [2070] "Actinomyces_sp_oral_taxon_181 1.13950620 0.92487783 0.4415151033"
## [2071] "Actinomyces_sp_oral_taxon_414 -0.24656943 0.07575624 0.6232947535"
## [2072] "Actinomyces_sp_oral_taxon_448 -1.75114669 -0.11313375 -2.9689158730"
## [2073] "Actinomyces_sp_oral_taxon_897 -3.06167375 -1.24903074 -4.4430562762"
## [2074] "Actinomyces_viscosus 2.04769546 0.87790255 1.1780092730"
## [2075] "Aeriscardovia_aeriphila 1.55860711 0.51982158 -0.5303599063"
## [2076] "Alloscardovia_omnicolens 0.93368038 0.64310390 0.8430628562"
## [2077] "Bifidobacterium_dentium -0.76020440 -1.49220008 1.2366461687"
## [2078] "Bifidobacterium_longum 2.82916026 -1.89499710 -0.0960656599"
## [2079] "Scardovia_wiggsiae -0.67932664 0.51401054 0.8322341809"
## [2080] "Corynebacterium_atypicum 0.01029590 0.59697137 -3.0484165360"
## [2081] "Corynebacterium_durum 3.31842316 0.16947962 0.5503970096"
## [2082] "Corynebacterium_matruchotii 0.07535009 -0.48759518 0.9463205302"
## [2083] "Rothia_aeria -1.12876466 1.44622472 0.4232471658"
## [2084] "Rothia_dentocariosa 0.26157185 0.85167155 0.5512855510"
## [2085] "Rothia_mucilaginosa 1.03705757 0.95549627 0.6342495550"
## [2086] "Cutibacterium_acnes 0.03109510 -2.74262438 0.3803133488"
## [2087] "Propionibacterium_acidifaciens -1.65890703 -3.44277469 3.2588961498"
## [2088] "Pseudopropionibacterium_propionicum 0.96971394 1.12486857 1.0165374335"
## [2089] "Atopobium_deltae -0.56198190 -0.66577308 1.3488369234"
## [2090] "Atopobium_parvulum 1.45222875 1.26182192 0.9183504486"
## [2091] "Atopobium_rimae 0.97381088 0.83560433 0.6639182288"
## [2092] "Olsenella_profusa 1.89272086 1.37158412 0.9184741648"
## [2093] "Olsenella_scatoligenes 1.36828227 1.08325315 0.9712754684"
## [2094] "Olsenella_uli -1.36154309 1.58149302 1.7450122323"
## [2095] "Collinsella_aerofaciens 1.59101881 1.13698953 0.5336540770"
## [2096] "Collinsella_intestinalis -2.58568584 -0.29653220 0.3855991130"
## [2097] "Collinsella_stercoris -1.83059682 -0.16310372 0.4509670521"
## [2098] "Enorma_massiliensis -0.76956655 0.02451345 0.5016448031"
## [2099] "X.Collinsella._massiliensis 1.35052033 0.82202383 0.5513555525"
## [2100] "Asaccharobacter_celatus -0.01790292 -0.16902465 0.3196969122"
## [2101] "Denitrobacterium_detoxificans 0.03109510 -2.50783352 0.1382840522"
## [2102] "Enterorhabdus_caecimuris -0.22472342 -0.53928730 0.4708280375"
## [2103] "Slackia_exigua 1.99123215 0.29271477 0.2242040586"
## [2104] "Slackia_isoflavoniconvertens 2.03825015 0.96112513 0.7599325364"
## [2105] "Rubrobacter_radiotolerans -0.06288706 0.10231024 0.8769095301"
## [2106] "Thermoleophilum_album 1.30386520 -2.88050900 -0.0509034513"
## [2107] "Porphyromonas_endodontalis 0.61314942 -1.34679117 -0.8069310842"
## [2108] "Porphyromonas_somerae 1.74292083 4.52969711 1.1941084714"
## [2109] "Prevotella_histicola 0.49904637 1.33157103 -0.7421301778"
## [2110] "Prevotella_melaninogenica 0.13887199 0.02220046 4.3374705858"
## [2111] "Kouleothrix_aurantiaca -2.22062513 0.20173953 -0.6130836005"
## [2112] "Hydrogenibacillus_schlegelii -0.79403600 -1.32386732 0.2378596147"
## [2113] "Gemella_bergeri 1.05609844 -0.74787756 -0.0335367299"
## [2114] "Gemella_haemolysans 0.13132499 0.28980431 -0.3625104607"
## [2115] "Gemella_morbillorum 1.62177846 0.91830567 0.0005398477"
## [2116] "Gemella_sanguinis 0.14845203 0.67551553 0.1434485768"
## [2117] "Brochothrix_campestris 0.87648060 -1.18135317 -0.1937806115"
## [2118] "Staphylococcus_argenteus -0.90927573 0.73710479 -0.4017988343"
## [2119] "Staphylococcus_aureus -2.44392876 1.06961877 -2.0268008330"
## [2120] "Staphylococcus_epidermidis -1.63385317 -0.04565072 -2.8418575763"
## [2121] "Staphylococcus_schweitzeri 0.23763355 2.05707567 0.9486685927"
## [2122] "Abiotrophia_defectiva -1.44399001 0.25426381 0.0703976436"
## [2123] "Abiotrophia_sp_HMSC24B09 -1.58465513 0.95160485 -0.2728650212"
## [2124] "Granulicatella_adiacens 1.78499129 0.51580717 0.4163673431"
## [2125] "Granulicatella_elegans 0.52301854 0.55524865 0.1926663359"
## [2126] "Enterococcus_faecalis -0.78589904 -0.42278781 -1.7046351139"
## [2127] "Lactobacillus_rhamnosus -1.13969231 -2.08450130 2.5320596920"
## [2128] "Streptococcus_anginosus 0.11918181 0.17392700 0.5276330052"
## [2129] "Streptococcus_australis 0.22431404 1.71757708 1.6432439930"
## [2130] "Streptococcus_cristatus -1.84312071 2.61343137 1.0065003825"
## [2131] "Streptococcus_gordonii 0.70782836 0.45174279 0.8586122844"
## [2132] "Streptococcus_infantis 1.06489306 0.87491075 0.5554329333"
## [2133] "Streptococcus_milleri 0.95580253 -0.41040086 -2.4520885487"
## [2134] "Streptococcus_mitis 0.85253964 0.20605576 0.5803907034"
## [2135] "Streptococcus_oralis 0.56196605 0.25900308 0.5962820214"
## [2136] "Streptococcus_parasanguinis 0.41005088 0.27145160 -0.0980092293"
## [2137] "Streptococcus_peroris 1.95823495 1.10058159 -0.2521565799"
## [2138] "Streptococcus_pneumoniae 3.86602604 0.09235889 0.9521243344"
## [2139] "Streptococcus_pseudopneumoniae 2.69191872 -4.23949234 1.9064053924"
## [2140] "Streptococcus_salivarius 0.29023608 1.61325912 1.1090219378"
## [2141] "Streptococcus_sanguinis 0.42557243 -2.99597654 1.8581314587"
## [2142] "Streptococcus_sp_A12 -3.28006349 0.62218232 -0.6204664069"
## [2143] "Streptococcus_sp_F0442 1.52078828 0.60083858 0.6367009007"
## [2144] "Streptococcus_sp_HMSC034E03 -2.51002454 -1.00665029 1.0777444473"
## [2145] "Streptococcus_sp_HMSC067H01 -1.84467831 -0.95280625 0.4990924613"
## [2146] "Streptococcus_sp_HMSC071D03 -0.83170684 -1.81025932 0.7795116402"
## [2147] "Streptococcus_sp_HPH0090 1.95787958 -3.82603942 1.7823986395"
## [2148] "Streptococcus_sp_M334 2.01077034 2.76231243 0.2863504043"
## [2149] "Streptococcus_vestibularis -1.97991229 1.13816371 -0.0278680749"
## [2150] "Eubacterium_brachy 1.40915193 -3.72504631 0.5752929882"
## [2151] "Eubacterium_infirmum -2.14889249 -3.99645625 0.8345574564"
## [2152] "Eubacterium_nodatum 1.35680991 -1.18628176 -2.8632012414"
## [2153] "Eubacterium_sulci 0.23558112 -1.95716979 -4.5958726217"
## [2154] "Mogibacterium_diversum 0.69308264 -1.72911025 0.2265974470"
## [2155] "Mogibacterium_pumilum -3.33583274 -3.69348584 -1.1901986339"
## [2156] "Mogibacterium_timidum -2.35029570 -2.31501834 1.6024696998"
## [2157] "Lachnoanaerobaculum_saburreum 0.43867778 -3.07207551 1.0163683966"
## [2158] "Oribacterium_parvum -1.73474180 0.13515267 -2.1987984318"
## [2159] "Oribacterium_sinus -4.04997963 -2.34146015 -3.7793996301"
## [2160] "Oribacterium_sp_oral_taxon_078 -0.35886337 -0.83286946 -0.8525627730"
## [2161] "Stomatobaculum_longum 1.50337380 0.90045696 1.2776281101"
## [2162] "Peptostreptococcus_stomatis 2.81990828 0.94869508 1.8134949238"
## [2163] "Bulleidia_extructa 1.69600818 -0.24407927 1.1716159135"
## [2164] "Solobacterium_moorei 1.61178467 0.63952138 0.1874846181"
## [2165] "Limnochorda_pilosa 1.10482316 0.55289656 0.3967723454"
## [2166] "Veillonella_atypica 1.99624807 1.68423183 0.1685385871"
## [2167] "Veillonella_dispar 0.61009747 -0.04910479 1.1676885511"
## [2168] "Veillonella_infantium -4.19864375 0.76405947 0.3207025732"
## [2169] "Veillonella_parvula 0.02549373 -0.26000830 1.4611967615"
## [2170] "Veillonella_sp_T11011_6 -3.87502222 1.31146310 -5.3195220025"
## [2171] "Parvimonas_micra 0.88490675 -0.13295181 1.6312256511"
## [2172] "Parvimonas_sp_oral_taxon_110 -2.45255316 -1.30492537 -3.7779707153"
## [2173] "Parvimonas_sp_oral_taxon_393 1.34266066 -2.59242810 -0.3809061295"
## [2174] "Fusobacterium_nucleatum -4.42158669 -0.83887359 0.0436712138"
## [2175] "Leptotrichia_wadei -1.29966792 1.37502153 -3.5353508365"
## [2176] "Gemmata_obscuriglobus 0.03109510 -0.99224492 0.2719924871"
## [2177] "Paludisphaera_borealis -0.05458162 -2.38379652 -0.1923943753"
## [2178] "Achromobacter_xylosoxidans 1.38247945 0.07475665 -1.2312096020"
## [2179] "Cupriavidus_sp 2.62230552 1.49274356 0.9521698339"
## [2180] "Sutterella_parvirubra 1.15762024 0.50464796 1.1402321488"
## [2181] "Anaerobiospirillum_thomasii -1.18443335 0.10055932 0.2031969763"
## [2182] "Cardiobacterium_hominis -1.42129769 0.19446608 -3.4201886466"
## [2183] "Cardiobacterium_valvarum -1.27151731 0.09939104 -2.6369386890"
## [2184] "Alkalilimnicola_ehrlichii -0.16038357 3.29761535 0.3545407730"
## [2185] "Escherichia_coli 0.18511680 -0.24141133 -1.0572816361"
## [2186] "Thiohalorhabdus_denitrificans -0.48832728 1.56524825 1.5363541113"
## [2187] "Pseudomonas_aeruginosa 0.09458023 1.13331068 -0.7279750624"
## [2188] "Acholeplasma_oculi -0.68166080 0.66172255 -0.2185076943"
## [2189] "Candida_parapsilosis -1.32712537 -0.14219102 -3.4310148836"
## [2190] "Nakamurella_silvestris 0.03751343 0.28341111 -2.8873497549"
## [2191] "Prevotella_jejuni 0.92594929 1.68967591 -1.1752155432"
## [2192] "Prevotella_pallens -0.17122338 1.21366924 -0.8315796239"
## [2193] "Prevotella_salivae 3.03408825 0.81400392 -0.7179336675"
## [2194] "Tannerella_sp_oral_taxon_HOT_286 -1.48998252 0.61252412 -0.7949431586"
## [2195] "Capnocytophaga_gingivalis -0.03395401 2.83459126 -0.9695198011"
## [2196] "Lactobacillus_gasseri 0.42587332 -0.71997852 -0.1960015140"
## [2197] "Sharpea_azabuensis 0.21257000 0.46561946 0.6771234318"
## [2198] "Streptococcus_mutans 0.14907493 -2.76054038 2.0319961516"
## [2199] "Oribacterium_asaccharolyticum -1.55433346 -1.05611743 -2.0060991229"
## [2200] "Megasphaera_micronuciformis -1.82102539 0.27525508 -2.1980303761"
## [2201] "Neisseria_flavescens -2.84858923 3.70585470 -1.3313235613"
## [2202] "Neisseria_subflava -3.16549193 4.38611368 0.9448010792"
## [2203] "Stenotrophomonas_maltophilia -1.57259920 0.43358263 -0.3305409538"
## [2204] "Stenotrophomonas_pavanii -0.72428122 2.22158835 2.8846806169"
## [2205] "Stenotrophomonas_rhizophila -2.02299176 1.97711409 2.7273233554"
## [2206] "Streptococcus_sobrinus 0.24754876 -1.69509770 -3.2742836842"
## [2207] "Eggerthia_catenaformis -0.97554915 -1.66245347 0.5960017029"
## [2208] "Haemophilus_parainfluenzae -2.87095758 0.53082097 -1.2247419719"
## [2209] " CFB_d_lyPMA CFB_d_host_zero CFB_d_control"
## [2210] "Actinobaculum_sp_oral_taxon_183 3.678695735 -1.46396665 1.872430381"
## [2211] "Actinomyces_georgiae 2.060153838 -2.07126630 0.253888485"
## [2212] "Actinomyces_graevenitzii -1.827655524 1.96313339 -0.123944744"
## [2213] "Actinomyces_hongkongensis 2.058683521 -1.81249098 0.252418167"
## [2214] "Actinomyces_johnsonii -0.737638040 3.29092354 -1.115812785"
## [2215] "Actinomyces_massiliensis 2.852101450 -4.08961546 1.045836097"
## [2216] "Actinomyces_meyeri 1.307058398 0.16135800 0.350492093"
## [2217] "Actinomyces_naeslundii 1.520821440 1.82127240 -0.285443914"
## [2218] "Actinomyces_odontolyticus -2.893206211 2.08682553 -0.862317636"
## [2219] "Actinomyces_oris -4.617541947 1.88596170 -0.750446609"
## [2220] "Actinomyces_sp_HMSC035G02 -2.688367662 1.70979698 0.128548341"
## [2221] "Actinomyces_sp_HPA0247 -1.104030986 1.23026501 0.053089402"
## [2222] "Actinomyces_sp_ICM47 -2.332254555 1.30805870 -0.675311556"
## [2223] "Actinomyces_sp_S6_Spd3 -1.442095724 0.64095494 1.786780661"
## [2224] "Actinomyces_sp_oral_taxon_170 0.387413210 1.10439315 -1.418852144"
## [2225] "Actinomyces_sp_oral_taxon_180 1.060638255 1.84507108 0.318974897"
## [2226] "Actinomyces_sp_oral_taxon_181 -1.786686953 1.15598287 1.512519713"
## [2227] "Actinomyces_sp_oral_taxon_414 1.389768960 -2.51356775 -0.416496394"
## [2228] "Actinomyces_sp_oral_taxon_448 1.153959943 -0.46713818 0.573068427"
## [2229] "Actinomyces_sp_oral_taxon_897 2.620352676 -0.57703462 0.814087322"
## [2230] "Actinomyces_viscosus 1.282476151 -3.81075211 0.206936800"
## [2231] "Aeriscardovia_aeriphila -0.479915783 0.91885000 0.399355068"
## [2232] "Alloscardovia_omnicolens 1.045682545 1.22411355 -0.760582808"
## [2233] "Bifidobacterium_dentium 0.918321327 -1.92772201 0.037050535"
## [2234] "Bifidobacterium_longum 2.259218582 -1.23741377 0.452953228"
## [2235] "Scardovia_wiggsiae -1.760927920 1.32000151 0.602316185"
## [2236] "Corynebacterium_atypicum 2.093539250 -0.24168551 0.287273896"
## [2237] "Corynebacterium_durum 0.162517771 0.73526150 -0.309087989"
## [2238] "Corynebacterium_matruchotii 0.697463911 -2.82015051 -0.141545062"
## [2239] "Rothia_aeria -0.587680131 1.10919150 -0.686467905"
## [2240] "Rothia_dentocariosa -1.519460813 1.47505819 -1.844034296"
## [2241] "Rothia_mucilaginosa 0.032937242 1.67873953 -5.316529584"
## [2242] "Cutibacterium_acnes 2.125240251 -3.18369356 0.318974897"
## [2243] "Propionibacterium_acidifaciens 1.306413977 0.46612519 -0.499851376"
## [2244] "Pseudopropionibacterium_propionicum -0.963357422 1.63953124 0.218432591"
## [2245] "Atopobium_deltae 0.811591873 0.44241281 -0.994673481"
## [2246] "Atopobium_parvulum -2.591142166 1.55507408 0.328621152"
## [2247] "Atopobium_rimae -0.956437320 1.06667064 0.371687534"
## [2248] "Olsenella_profusa -1.126128528 2.24063767 -1.390801576"
## [2249] "Olsenella_scatoligenes 0.246967625 1.23748467 -0.059081303"
## [2250] "Olsenella_uli -1.771195788 2.15441337 -1.801705927"
## [2251] "Collinsella_aerofaciens -0.305262475 0.52729607 0.318974897"
## [2252] "Collinsella_intestinalis 0.001584602 1.11758655 0.135054240"
## [2253] "Collinsella_stercoris 0.552322845 0.75886146 -0.113186014"
## [2254] "Enorma_massiliensis 0.942371927 0.48577913 -0.035266481"
## [2255] "X.Collinsella._massiliensis 0.873323958 1.57975195 0.318974897"
## [2256] "Asaccharobacter_celatus 2.046658093 -2.04852555 0.240392739"
## [2257] "Denitrobacterium_detoxificans 2.125240251 -1.89186035 0.318974897"
## [2258] "Enterorhabdus_caecimuris 1.739628834 -1.29496290 -0.066636520"
## [2259] "Slackia_exigua -0.002566459 1.81666058 -0.295466117"
## [2260] "Slackia_isoflavoniconvertens 0.998282330 1.20419890 0.318974897"
## [2261] "Rubrobacter_radiotolerans 1.753082265 0.16472298 -0.053183089"
## [2262] "Thermoleophilum_album 0.626738841 -2.52579397 0.775967630"
## [2263] "Porphyromonas_endodontalis -0.775778620 2.02405864 0.517975563"
## [2264] "Porphyromonas_somerae -3.741783273 3.54215993 -0.949203608"
## [2265] "Prevotella_histicola -0.697635917 -1.34301055 0.006531288"
## [2266] "Prevotella_melaninogenica -0.463855609 -1.84700872 -1.509076274"
## [2267] "Kouleothrix_aurantiaca 1.991791396 -1.26823527 0.185526042"
## [2268] "Hydrogenibacillus_schlegelii 1.660320093 -1.38975862 -0.145945261"
## [2269] "Gemella_bergeri 0.696674771 -1.29099032 0.318974897"
## [2270] "Gemella_haemolysans -0.194864163 0.43183831 -0.967748072"
## [2271] "Gemella_morbillorum -3.238326352 0.94000781 0.318974897"
## [2272] "Gemella_sanguinis 0.009614326 1.49143506 0.829856068"
## [2273] "Brochothrix_campestris 1.326589425 -0.24512199 -0.479675929"
## [2274] "Staphylococcus_argenteus -0.980211377 0.33575778 0.429513763"
## [2275] "Staphylococcus_aureus -0.560834319 0.35209596 0.630795133"
## [2276] "Staphylococcus_epidermidis 0.737061054 -0.18035807 0.530328325"
## [2277] "Staphylococcus_schweitzeri -2.792595883 3.19436413 -3.189705921"
## [2278] "Abiotrophia_defectiva 1.054807817 0.71555196 -0.751457537"
## [2279] "Abiotrophia_sp_HMSC24B09 0.948976602 0.80052765 -0.857288752"
## [2280] "Granulicatella_adiacens -1.372130086 0.67197171 0.665828469"
## [2281] "Granulicatella_elegans -3.882606410 1.00878894 0.739966313"
## [2282] "Enterococcus_faecalis 1.795544489 -0.67630815 -0.010720865"
## [2283] "Lactobacillus_rhamnosus 1.605492336 -2.77259348 -0.200773018"
## [2284] "Streptococcus_anginosus -1.970257185 2.10182983 0.318974897"
## [2285] "Streptococcus_australis -4.789281208 2.44766172 -0.281051328"
## [2286] "Streptococcus_cristatus -1.389706328 1.78224097 -1.226524759"
## [2287] "Streptococcus_gordonii -2.865533728 2.04364475 1.007684450"
## [2288] "Streptococcus_infantis -1.067160466 1.11016804 -0.630326547"
## [2289] "Streptococcus_milleri 0.318794660 -0.92887665 1.627255616"
## [2290] "Streptococcus_mitis -0.463876088 0.99663707 -4.628782171"
## [2291] "Streptococcus_oralis -5.817753338 0.93968094 -2.143507639"
## [2292] "Streptococcus_parasanguinis -0.901836101 0.76754207 -0.895851438"
## [2293] "Streptococcus_peroris -3.005425410 1.14711600 -0.309136696"
## [2294] "Streptococcus_pneumoniae 0.459142921 -3.03906494 0.614526041"
## [2295] "Streptococcus_pseudopneumoniae -0.661124841 1.42294239 0.806922823"
## [2296] "Streptococcus_salivarius -4.217451033 1.52373651 -2.671645713"
## [2297] "Streptococcus_sanguinis -0.966651426 -2.54229361 3.380402715"
## [2298] "Streptococcus_sp_A12 -1.027350770 1.28710079 0.615158996"
## [2299] "Streptococcus_sp_F0442 -3.360620396 1.48878763 1.590560123"
## [2300] "Streptococcus_sp_HMSC034E03 -0.247618631 -1.33533854 1.219785198"
## [2301] "Streptococcus_sp_HMSC067H01 0.596810153 -1.72751618 0.691116944"
## [2302] "Streptococcus_sp_HMSC071D03 0.055384254 2.97772131 -0.172989270"
## [2303] "Streptococcus_sp_HPH0090 0.356354372 -3.73251244 1.552498576"
## [2304] "Streptococcus_sp_M334 -3.303108492 3.18995183 -1.080483379"
## [2305] "Streptococcus_vestibularis -0.963063066 -3.60836047 0.457104594"
## [2306] "Eubacterium_brachy 0.883666925 -2.71917866 2.577603006"
## [2307] "Eubacterium_infirmum 2.125240251 -3.26523922 0.318974897"
## [2308] "Eubacterium_nodatum 2.705827953 -0.60829032 0.899562600"
## [2309] "Eubacterium_sulci 3.836808715 -1.76287917 2.329324280"
## [2310] "Mogibacterium_diversum 2.186853013 -0.11914030 0.444851745"
## [2311] "Mogibacterium_pumilum 2.849440706 -3.13275410 1.043175352"
## [2312] "Mogibacterium_timidum 1.818825204 -1.92479542 0.012559851"
## [2313] "Lachnoanaerobaculum_saburreum -0.426608692 -1.66995635 2.017328661"
## [2314] "Oribacterium_parvum 0.638180589 0.10484907 0.199381798"
## [2315] "Oribacterium_sinus 0.917918191 -1.62003040 3.809384310"
## [2316] "Oribacterium_sp_oral_taxon_078 2.046310041 -2.74702843 0.240044687"
## [2317] "Stomatobaculum_longum -1.718696876 1.89829100 -0.184539002"
## [2318] "Peptostreptococcus_stomatis -0.470533763 1.75391194 -1.120650413"
## [2319] "Bulleidia_extructa -0.764114354 0.98247117 0.201088940"
## [2320] "Solobacterium_moorei -1.962948401 0.65855530 0.377309855"
## [2321] "Limnochorda_pilosa 1.027633724 0.07348491 0.268656763"
## [2322] "Veillonella_atypica -0.307291398 0.71515709 -1.954091816"
## [2323] "Veillonella_dispar -1.006566953 -0.77205986 -0.715580552"
## [2324] "Veillonella_infantium -1.538383873 0.38157892 -0.254803644"
## [2325] "Veillonella_parvula 0.187613968 -1.74583187 0.686718233"
## [2326] "Veillonella_sp_T11011_6 0.737955906 1.16779999 0.189758658"
## [2327] "Parvimonas_micra -0.588534349 -3.78585916 2.622773863"
## [2328] "Parvimonas_sp_oral_taxon_110 1.855619171 -1.97704197 1.187425708"
## [2329] "Parvimonas_sp_oral_taxon_393 1.823578267 -2.21651623 1.340258033"
## [2330] "Fusobacterium_nucleatum 1.204206214 3.74941798 0.318974897"
## [2331] "Leptotrichia_wadei -0.822444116 2.68453856 0.074158650"
## [2332] "Gemmata_obscuriglobus 2.125240251 -1.19661026 0.318974897"
## [2333] "Paludisphaera_borealis 0.959915640 -3.06022558 0.331425877"
## [2334] "Achromobacter_xylosoxidans 0.179455306 1.11566756 -1.258832524"
## [2335] "Cupriavidus_sp -3.100680989 1.38855373 0.318974897"
## [2336] "Sutterella_parvirubra -0.991837012 -2.37082817 0.318974897"
## [2337] "Anaerobiospirillum_thomasii 2.125240251 -2.82371335 0.318974897"
## [2338] "Cardiobacterium_hominis 0.811245009 -0.27348376 0.605116612"
## [2339] "Cardiobacterium_valvarum 0.708812367 -0.38412942 0.281683552"
## [2340] "Alkalilimnicola_ehrlichii 0.398057562 -0.83604761 -1.151941956"
## [2341] "Escherichia_coli 0.384456001 0.91302682 -1.267950352"
## [2342] "Thiohalorhabdus_denitrificans -0.165952952 -1.34657678 -0.478685191"
## [2343] "Pseudomonas_aeruginosa -0.136596145 2.02376867 -1.809016874"
## [2344] "Acholeplasma_oculi 1.076861145 -2.80523078 -0.729404209"
## [2345] "Candida_parapsilosis 0.540986189 1.05630550 0.685439728"
## [2346] "Nakamurella_silvestris 2.051885182 -0.47203945 0.245619828"
## [2347] "Prevotella_jejuni 1.217008550 -1.81222406 0.388813022"
## [2348] "Prevotella_pallens 1.413515325 -0.08033271 -0.323534844"
## [2349] "Prevotella_salivae 1.682718342 -1.53075840 -0.042619485"
## [2350] "Tannerella_sp_oral_taxon_HOT_286 -0.341007879 -1.52815136 0.768213471"
## [2351] "Capnocytophaga_gingivalis 0.437504195 -4.42733703 0.345688721"
## [2352] "Lactobacillus_gasseri 0.002170225 0.54981162 -0.339857418"
## [2353] "Sharpea_azabuensis 1.890045900 -0.50327330 0.083780546"
## [2354] "Streptococcus_mutans 0.129754831 -1.93354480 1.650550115"
## [2355] "Oribacterium_asaccharolyticum 2.288236019 -0.73641920 0.481970666"
## [2356] "Megasphaera_micronuciformis 1.539434107 0.59787656 -0.416369279"
## [2357] "Neisseria_flavescens 0.351817738 2.74454049 -3.619392182"
## [2358] "Neisseria_subflava -3.553115281 3.42203658 -3.947319486"
## [2359] "Stenotrophomonas_maltophilia 1.079369783 0.33772740 0.681025471"
## [2360] "Stenotrophomonas_pavanii -1.826003388 2.72061768 1.908992885"
## [2361] "Stenotrophomonas_rhizophila -4.403511235 3.54176401 0.634613369"
## [2362] "Streptococcus_sobrinus 2.381556415 -0.40767260 0.575291061"
## [2363] "Eggerthia_catenaformis 0.961801722 -0.84552373 0.436912366"
## [2364] "Haemophilus_parainfluenzae 1.965101622 1.46187786 -0.920796272"
## [2365] " CFB_d_benzonase CFB_c_qiaamp CFB_c_molysis"
## [2366] "Actinobaculum_sp_oral_taxon_183 1.47420970 2.412191080 1.229048075"
## [2367] "Actinomyces_georgiae 3.06354905 -2.366581268 -1.742619081"
## [2368] "Actinomyces_graevenitzii -3.08309643 -0.554786463 -0.796640400"
## [2369] "Actinomyces_hongkongensis 3.06207874 -2.164256554 -1.154545613"
## [2370] "Actinomyces_johnsonii -3.42196484 -3.034864619 -4.546469052"
## [2371] "Actinomyces_massiliensis -0.22198233 -4.060614130 -0.585246191"
## [2372] "Actinomyces_meyeri 0.62581935 -2.876641931 -0.428036224"
## [2373] "Actinomyces_naeslundii -0.71600936 0.448477559 -0.831606309"
## [2374] "Actinomyces_odontolyticus -3.57439586 0.432587839 0.408963220"
## [2375] "Actinomyces_oris -0.38599485 -1.473875754 0.445937916"
## [2376] "Actinomyces_sp_HMSC035G02 -3.54657502 0.282774825 0.401633153"
## [2377] "Actinomyces_sp_HPA0247 -2.76780317 0.705828643 0.643660781"
## [2378] "Actinomyces_sp_ICM47 -4.05468939 0.239575334 -0.024065916"
## [2379] "Actinomyces_sp_S6_Spd3 -2.74733959 0.386817403 0.274950706"
## [2380] "Actinomyces_sp_oral_taxon_170 0.17482179 0.018511854 -0.318940666"
## [2381] "Actinomyces_sp_oral_taxon_180 -2.76576252 -0.659483991 -0.888084356"
## [2382] "Actinomyces_sp_oral_taxon_181 -3.51842958 0.500909634 0.250537611"
## [2383] "Actinomyces_sp_oral_taxon_414 2.39316418 2.703249123 0.994247979"
## [2384] "Actinomyces_sp_oral_taxon_448 1.66475182 0.224303007 -1.497097490"
## [2385] "Actinomyces_sp_oral_taxon_897 1.86657882 -1.122538072 -3.182181988"
## [2386] "Actinomyces_viscosus -0.96700317 0.791469596 -0.982821336"
## [2387] "Aeriscardovia_aeriphila -1.53008884 0.654000755 0.165050761"
## [2388] "Alloscardovia_omnicolens -2.32267118 1.716905433 1.273189344"
## [2389] "Bifidobacterium_dentium 1.46416254 3.013231630 0.557497369"
## [2390] "Bifidobacterium_longum 0.39266393 -1.604830453 1.274639377"
## [2391] "Scardovia_wiggsiae -1.91400330 1.227187995 -0.696805481"
## [2392] "Corynebacterium_atypicum 3.09693447 -0.233217734 -2.744224014"
## [2393] "Corynebacterium_durum -0.49319981 -0.009119193 -0.906355546"
## [2394] "Corynebacterium_matruchotii 2.66811551 -1.562386674 2.251148041"
## [2395] "Rothia_aeria 0.33659175 2.806055147 -1.074789486"
## [2396] "Rothia_dentocariosa 0.51733773 -0.138315972 -0.127778085"
## [2397] "Rothia_mucilaginosa 0.50890815 0.494763813 0.611575917"
## [2398] "Cutibacterium_acnes 3.12863547 -3.661428895 0.689995547"
## [2399] "Propionibacterium_acidifaciens 1.37153962 -1.973305954 -3.376084132"
## [2400] "Pseudopropionibacterium_propionicum -2.73055362 -1.347408992 -0.771334017"
## [2401] "Atopobium_deltae 1.81498709 0.133418446 -2.316011888"
## [2402] "Atopobium_parvulum -3.12652619 0.369941441 0.050247537"
## [2403] "Atopobium_rimae -3.62218561 0.505176934 0.189137535"
## [2404] "Olsenella_profusa -0.87116370 0.385154213 0.591804441"
## [2405] "Olsenella_scatoligenes -1.54757192 0.614406872 -0.286983854"
## [2406] "Olsenella_uli -0.45240983 1.173364605 1.208277466"
## [2407] "Collinsella_aerofaciens -1.06401346 0.331991909 -0.135323462"
## [2408] "Collinsella_intestinalis -0.04314036 -0.896355691 -0.076250510"
## [2409] "Collinsella_stercoris 0.43801880 0.195107386 -0.076398424"
## [2410] "Enorma_massiliensis 1.81358988 0.371734219 -0.557130249"
## [2411] "X.Collinsella._massiliensis -1.78438732 0.091967173 -0.386668828"
## [2412] "Asaccharobacter_celatus 3.05005331 -0.999362819 -0.068400271"
## [2413] "Denitrobacterium_detoxificans 3.12863547 0.850028085 -1.020205969"
## [2414] "Enterorhabdus_caecimuris 2.74302405 -0.718205216 -0.554478266"
## [2415] "Slackia_exigua -1.31076928 0.494384533 -0.375023744"
## [2416] "Slackia_isoflavoniconvertens 0.12515523 0.195892765 -0.368935419"
## [2417] "Rubrobacter_radiotolerans 2.75647748 -0.420097431 1.461103914"
## [2418] "Thermoleophilum_album 0.33346550 1.339593999 0.378512312"
## [2419] "Porphyromonas_endodontalis 0.27703332 -0.926160645 0.748081064"
## [2420] "Porphyromonas_somerae -3.23395688 -0.549739361 -2.697527060"
## [2421] "Prevotella_histicola -0.12152308 -4.893898846 1.444720138"
## [2422] "Prevotella_melaninogenica -1.75053478 -0.724419572 -1.890833004"
## [2423] "Kouleothrix_aurantiaca 0.70122895 -0.590534295 0.402498610"
## [2424] "Hydrogenibacillus_schlegelii 2.66371531 -1.493163026 2.277208792"
## [2425] "Gemella_bergeri -2.54954930 1.022485941 0.474489063"
## [2426] "Gemella_haemolysans 1.55000742 0.456136862 -0.002582832"
## [2427] "Gemella_morbillorum -3.58986570 0.217371721 0.285551836"
## [2428] "Gemella_sanguinis 0.64953385 0.886392346 0.771362008"
## [2429] "Brochothrix_campestris 2.32998464 1.444845112 0.081683233"
## [2430] "Staphylococcus_argenteus 1.02719486 0.862961750 1.833149783"
## [2431] "Staphylococcus_aureus 1.64153214 2.037624601 0.794436042"
## [2432] "Staphylococcus_epidermidis 1.68986488 0.310299441 -1.351525793"
## [2433] "Staphylococcus_schweitzeri 3.14725359 0.715524166 1.169294198"
## [2434] "Abiotrophia_defectiva -0.53414949 -0.118610247 0.203840754"
## [2435] "Abiotrophia_sp_HMSC24B09 -0.65994906 1.359668982 0.132534785"
## [2436] "Granulicatella_adiacens -2.14106548 0.596349611 -0.234995446"
## [2437] "Granulicatella_elegans 0.15063820 0.439840926 0.371377437"
## [2438] "Enterococcus_faecalis 2.79893971 -0.612084297 -0.759549980"
## [2439] "Lactobacillus_rhamnosus 2.60888755 -1.986994796 -4.898211146"
## [2440] "Streptococcus_anginosus 1.50977930 -0.316707605 0.041048230"
## [2441] "Streptococcus_australis 2.21409678 -0.433463274 -0.710151067"
## [2442] "Streptococcus_cristatus -1.76538417 2.564954412 0.636102921"
## [2443] "Streptococcus_gordonii -2.59049596 0.324923091 -0.177870048"
## [2444] "Streptococcus_infantis 1.15787924 0.205028256 0.390501925"
## [2445] "Streptococcus_milleri 1.20614908 -1.195891882 -2.103197949"
## [2446] "Streptococcus_mitis 0.50524179 -0.216512807 0.062019401"
## [2447] "Streptococcus_oralis 1.24669987 0.254577600 0.073294713"
## [2448] "Streptococcus_parasanguinis 0.41406004 0.425192343 0.310773421"
## [2449] "Streptococcus_peroris 2.02697451 1.802393233 0.635247803"
## [2450] "Streptococcus_pneumoniae -0.19391887 0.156728656 0.858927008"
## [2451] "Streptococcus_pseudopneumoniae -1.25346443 2.372172869 -0.639660903"
## [2452] "Streptococcus_salivarius 0.87197592 -0.033911522 -0.025750880"
## [2453] "Streptococcus_sanguinis -0.68973776 1.488339615 0.119751679"
## [2454] "Streptococcus_sp_A12 -1.41008130 0.381102229 -0.333833428"
## [2455] "Streptococcus_sp_F0442 -3.37437924 0.033070088 0.232610312"
## [2456] "Streptococcus_sp_HMSC034E03 -0.43026353 -1.347056574 0.406758585"
## [2457] "Streptococcus_sp_HMSC067H01 0.50840518 -0.545134959 1.026020729"
## [2458] "Streptococcus_sp_HMSC071D03 1.24177552 -1.408353782 0.386779267"
## [2459] "Streptococcus_sp_HPH0090 -1.28064822 0.306343143 0.639511296"
## [2460] "Streptococcus_sp_M334 -1.05728570 1.318465959 0.104160689"
## [2461] "Streptococcus_vestibularis 0.90245742 -0.241040929 0.458817006"
## [2462] "Eubacterium_brachy 0.54365292 1.203858721 -0.339001090"
## [2463] "Eubacterium_infirmum 0.94864789 2.336793193 0.074135666"
## [2464] "Eubacterium_nodatum 0.51209900 -0.905234066 -1.447771924"
## [2465] "Eubacterium_sulci 0.69721510 0.484972567 1.168077516"
## [2466] "Mogibacterium_diversum -3.02776692 0.505075097 -0.215206718"
## [2467] "Mogibacterium_pumilum 0.19141487 1.357659416 0.417838259"
## [2468] "Mogibacterium_timidum 1.13511058 1.737524130 0.552695078"
## [2469] "Lachnoanaerobaculum_saburreum -1.82686700 2.567642790 -0.314390356"
## [2470] "Oribacterium_parvum 1.18271801 0.492911778 -0.706657705"
## [2471] "Oribacterium_sinus 0.84206451 0.839246527 1.182013599"
## [2472] "Oribacterium_sp_oral_taxon_078 3.04970526 -1.743657385 0.519515044"
## [2473] "Stomatobaculum_longum -2.73847574 -1.466713772 1.296134853"
## [2474] "Peptostreptococcus_stomatis -0.90017999 0.218552408 1.918451400"
## [2475] "Bulleidia_extructa -1.29917792 0.224803292 -0.848294939"
## [2476] "Solobacterium_moorei -4.05059090 1.301173893 0.750767667"
## [2477] "Limnochorda_pilosa -2.00354190 0.469841279 0.026485309"
## [2478] "Veillonella_atypica -2.43959706 -2.056270673 -0.085851352"
## [2479] "Veillonella_dispar -1.09022922 -3.972718700 -0.134583205"
## [2480] "Veillonella_infantium -0.76237407 -1.029225053 0.259045053"
## [2481] "Veillonella_parvula -2.19555813 -1.601712991 -0.552578421"
## [2482] "Veillonella_sp_T11011_6 -0.30737727 -1.662940983 1.853563741"
## [2483] "Parvimonas_micra -1.85597438 0.708402059 -0.530343014"
## [2484] "Parvimonas_sp_oral_taxon_110 1.82360129 2.677817187 2.864242235"
## [2485] "Parvimonas_sp_oral_taxon_393 0.54373583 1.999746521 0.161601973"
## [2486] "Fusobacterium_nucleatum -1.32404632 -1.757678095 -0.040413078"
## [2487] "Leptotrichia_wadei 1.11228773 -0.944952695 1.513467284"
## [2488] "Gemmata_obscuriglobus 3.12863547 4.273099461 0.115200032"
## [2489] "Paludisphaera_borealis 3.14108645 -3.288224027 0.448633931"
## [2490] "Achromobacter_xylosoxidans 1.10677984 0.531110968 0.359526343"
## [2491] "Cupriavidus_sp -3.63450824 -0.328214022 0.501672915"
## [2492] "Sutterella_parvirubra -1.54997436 -0.414156550 0.303351912"
## [2493] "Anaerobiospirillum_thomasii 1.91310702 -0.818245190 0.706581719"
## [2494] "Cardiobacterium_hominis 1.89741648 0.526509331 -1.953763770"
## [2495] "Cardiobacterium_valvarum 1.95530960 0.431623215 -1.170324892"
## [2496] "Alkalilimnicola_ehrlichii -1.83963837 -2.229605838 1.471089548"
## [2497] "Escherichia_coli 1.25044584 0.217366983 0.535878299"
## [2498] "Thiohalorhabdus_denitrificans -1.41621348 -0.116832710 1.042721999"
## [2499] "Pseudomonas_aeruginosa -0.01587512 -0.375977706 1.174750341"
## [2500] "Acholeplasma_oculi 6.01038027 -0.138177716 0.591511278"
## [2501] "Candida_parapsilosis 1.12021535 0.225344558 -1.929097684"
## [2502] "Nakamurella_silvestris 3.05528040 -0.410877123 -2.447256365"
## [2503] "Prevotella_jejuni -0.46494534 0.546463928 -1.184045897"
## [2504] "Prevotella_pallens -1.79239154 0.446202055 -0.464665186"
## [2505] "Prevotella_salivae -0.65098163 -1.163765827 -1.561321790"
## [2506] "Tannerella_sp_oral_taxon_HOT_286 0.76930020 0.857678330 0.584592676"
## [2507] "Capnocytophaga_gingivalis 1.72932959 0.904606014 -0.649629354"
## [2508] "Lactobacillus_gasseri 1.01407736 -0.697084960 3.183344250"
## [2509] "Sharpea_azabuensis 2.89344112 -0.207555403 2.229160342"
## [2510] "Streptococcus_mutans 0.05068790 1.809246568 1.522707921"
## [2511] "Oribacterium_asaccharolyticum 0.70623311 1.756966114 1.750436111"
## [2512] "Megasphaera_micronuciformis 0.04400032 -0.127620852 -1.466524688"
## [2513] "Neisseria_flavescens 0.82877672 -2.595063680 1.433170773"
## [2514] "Neisseria_subflava 1.71078271 -1.267745350 1.522010282"
## [2515] "Stenotrophomonas_maltophilia -0.89567822 -2.377439331 -2.259459845"
## [2516] "Stenotrophomonas_pavanii -3.78342817 -0.689815470 0.748657073"
## [2517] "Stenotrophomonas_rhizophila 0.16918497 -1.826579737 -0.106487135"
## [2518] "Streptococcus_sobrinus 1.85208230 -1.601831994 -2.046636358"
## [2519] "Eggerthia_catenaformis 0.38700485 2.540939038 -0.748332763"
## [2520] "Haemophilus_parainfluenzae -0.73935614 -0.207109119 -0.828290439"
## [2521] " CFB_c_lyPMA CFB_c_host_zero CFB_c_control"
## [2522] "Actinobaculum_sp_oral_taxon_183 -1.91959692 2.06249224 -2.253708188"
## [2523] "Actinomyces_georgiae 0.78673634 -4.19299251 0.452625072"
## [2524] "Actinomyces_graevenitzii 0.42048690 0.03270592 1.574399698"
## [2525] "Actinomyces_hongkongensis 0.75635836 -3.96312485 0.422247092"
## [2526] "Actinomyces_johnsonii 3.58784807 -3.86614263 4.681827414"
## [2527] "Actinomyces_massiliensis 1.62931463 0.63499479 1.295203360"
## [2528] "Actinomyces_meyeri 0.66039457 0.22382808 1.175982349"
## [2529] "Actinomyces_naeslundii 1.03642049 -0.35447521 0.702309223"
## [2530] "Actinomyces_odontolyticus -0.12070846 0.57296369 -2.938434093"
## [2531] "Actinomyces_oris 2.36801234 -0.86300300 -0.783792770"
## [2532] "Actinomyces_sp_HMSC035G02 -0.95582248 0.39706573 -1.085592996"
## [2533] "Actinomyces_sp_HPA0247 -3.29748805 0.75123430 -0.668213574"
## [2534] "Actinomyces_sp_ICM47 -3.87302253 0.18204010 -0.743925446"
## [2535] "Actinomyces_sp_S6_Spd3 1.47487428 0.61667679 -1.969644878"
## [2536] "Actinomyces_sp_oral_taxon_170 0.88106234 0.13530290 0.546951070"
## [2537] "Actinomyces_sp_oral_taxon_180 -0.44486199 -1.06961232 0.285628736"
## [2538] "Actinomyces_sp_oral_taxon_181 2.14434055 0.47938585 -2.101660935"
## [2539] "Actinomyces_sp_oral_taxon_414 -0.61248516 2.28508574 -0.946596425"
## [2540] "Actinomyces_sp_oral_taxon_448 0.90470096 -1.56470587 1.795963535"
## [2541] "Actinomyces_sp_oral_taxon_897 2.16014960 -1.88554641 1.826038336"
## [2542] "Actinomyces_viscosus -1.36841334 1.92703199 -0.971798609"
## [2543] "Aeriscardovia_aeriphila -2.16457603 0.80703318 0.186848908"
## [2544] "Alloscardovia_omnicolens -2.07419249 1.67796440 -2.408303756"
## [2545] "Bifidobacterium_dentium -1.10311395 1.48480075 -0.512230656"
## [2546] "Bifidobacterium_longum 1.96268949 -2.38225157 1.628578224"
## [2547] "Scardovia_wiggsiae 0.78542130 -0.25305769 -0.716718592"
## [2548] "Corynebacterium_atypicum 0.67665441 -2.50687906 0.342543144"
## [2549] "Corynebacterium_durum 0.40758931 0.10489451 1.408137639"
## [2550] "Corynebacterium_matruchotii -0.96402332 2.96859309 -0.330878209"
## [2551] "Rothia_aeria -0.94313705 0.72124949 0.430229264"
## [2552] "Rothia_dentocariosa -0.38388177 0.06449572 2.034040488"
## [2553] "Rothia_mucilaginosa 0.50376961 0.60766310 0.674115762"
## [2554] "Cutibacterium_acnes 0.61974000 1.85699059 0.285628736"
## [2555] "Propionibacterium_acidifaciens 2.18918698 -3.45065424 1.855075710"
## [2556] "Pseudopropionibacterium_propionicum -1.50823012 -0.89010315 1.145713981"
## [2557] "Atopobium_deltae 1.02408766 -0.19340011 0.689976393"
## [2558] "Atopobium_parvulum 0.49849820 0.19849239 -1.441086244"
## [2559] "Atopobium_rimae -2.50117770 0.40122722 0.299101242"
## [2560] "Olsenella_profusa -0.65407559 1.55816320 0.553405448"
## [2561] "Olsenella_scatoligenes -0.83876211 0.37572510 0.327343052"
## [2562] "Olsenella_uli -1.43911609 1.58388258 0.002527862"
## [2563] "Collinsella_aerofaciens -1.81076272 0.33116941 0.285628736"
## [2564] "Collinsella_intestinalis -1.18493462 0.20069518 0.420689102"
## [2565] "Collinsella_stercoris -0.16656757 0.32501757 0.640077661"
## [2566] "Enorma_massiliensis -0.12171336 0.48054628 0.372802314"
## [2567] "X.Collinsella._massiliensis -0.63217629 0.17632693 0.285628736"
## [2568] "Asaccharobacter_celatus 0.62962419 0.29130202 0.295512920"
## [2569] "Denitrobacterium_detoxificans 0.61974000 0.08506403 0.285628736"
## [2570] "Enterorhabdus_caecimuris 0.97401518 -2.90888526 0.639903916"
## [2571] "Slackia_exigua -0.97876666 -0.18613022 0.200487767"
## [2572] "Slackia_isoflavoniconvertens -0.50721792 0.20790884 0.285628736"
## [2573] "Rubrobacter_radiotolerans 0.64397885 -1.79268914 0.309867585"
## [2574] "Thermoleophilum_album -1.18659127 1.51329832 0.434791609"
## [2575] "Porphyromonas_endodontalis -0.94184383 0.54544163 1.824064437"
## [2576] "Porphyromonas_somerae 0.02676772 -3.62727441 4.291501470"
## [2577] "Prevotella_histicola 1.79448445 0.64878110 1.334748005"
## [2578] "Prevotella_melaninogenica -1.79717138 2.68310720 -1.370237953"
## [2579] "Kouleothrix_aurantiaca 0.61282183 -3.49551355 0.278710564"
## [2580] "Hydrogenibacillus_schlegelii 0.90432865 -2.99405877 0.570217383"
## [2581] "Gemella_bergeri -0.80882548 1.42173692 0.285628736"
## [2582] "Gemella_haemolysans -0.41569344 0.58611497 0.264751120"
## [2583] "Gemella_morbillorum 0.34376974 0.51629443 0.285628736"
## [2584] "Gemella_sanguinis 0.06540960 0.99833846 -4.566284797"
## [2585] "Brochothrix_campestris -0.29746967 2.69861060 -0.631580941"
## [2586] "Staphylococcus_argenteus -0.59694066 -0.11110032 -2.350107237"
## [2587] "Staphylococcus_aureus 0.49621693 0.31414799 -4.934012108"
## [2588] "Staphylococcus_epidermidis 0.50631548 -1.25941236 1.771736835"
## [2589] "Staphylococcus_schweitzeri -1.67208605 0.78576931 -0.597042004"
## [2590] "Abiotrophia_defectiva -0.71578707 0.51479404 -1.049898340"
## [2591] "Abiotrophia_sp_HMSC24B09 -0.96393146 0.30802464 -1.298042726"
## [2592] "Granulicatella_adiacens -2.90391740 0.28594843 0.606195237"
## [2593] "Granulicatella_elegans 1.00780281 0.83951593 -0.515229954"
## [2594] "Enterococcus_faecalis 1.01955226 -2.30060909 0.685440996"
## [2595] "Lactobacillus_rhamnosus 1.11630310 3.46805405 0.782191832"
## [2596] "Streptococcus_anginosus -3.47575743 0.47082380 0.285628736"
## [2597] "Streptococcus_australis 0.30282776 -0.50181069 0.692224746"
## [2598] "Streptococcus_cristatus -3.35079287 1.18712532 -1.715457219"
## [2599] "Streptococcus_gordonii 0.01621491 0.08828433 -1.072959346"
## [2600] "Streptococcus_infantis 0.35354071 0.37716640 -0.643297159"
## [2601] "Streptococcus_milleri -1.05339210 4.30128868 1.727222941"
## [2602] "Streptococcus_mitis -0.24514514 0.42366316 -0.650720667"
## [2603] "Streptococcus_oralis 0.85734736 0.63418555 -2.176853800"
## [2604] "Streptococcus_parasanguinis 0.34668984 0.60158959 -0.868882841"
## [2605] "Streptococcus_peroris 1.56268886 0.70574616 -2.337584531"
## [2606] "Streptococcus_pneumoniae -0.06318305 -4.40969962 1.564354159"
## [2607] "Streptococcus_pseudopneumoniae -1.89667797 0.68982615 1.043523778"
## [2608] "Streptococcus_salivarius 0.67885841 0.08960376 1.283366935"
## [2609] "Streptococcus_sanguinis 0.11113188 1.68918728 -3.173194259"
## [2610] "Streptococcus_sp_A12 -2.58126027 -0.03474138 0.533403579"
## [2611] "Streptococcus_sp_F0442 0.62363563 0.06772554 -0.337019222"
## [2612] "Streptococcus_sp_HMSC034E03 -1.17472065 -3.11074927 1.764837265"
## [2613] "Streptococcus_sp_HMSC067H01 0.41778571 -2.75484934 1.984246586"
## [2614] "Streptococcus_sp_HMSC071D03 -0.12940595 -3.97963340 1.114374617"
## [2615] "Streptococcus_sp_HPH0090 -2.52767828 0.89755518 0.140620007"
## [2616] "Streptococcus_sp_M334 0.18444111 1.66075206 -2.193824219"
## [2617] "Streptococcus_vestibularis 1.46901410 1.89184959 -2.869951156"
## [2618] "Eubacterium_brachy -2.75140577 0.56850702 0.414684397"
## [2619] "Eubacterium_infirmum 0.61974000 1.49490793 0.285628736"
## [2620] "Eubacterium_nodatum 2.40017991 -1.76224707 2.066068643"
## [2621] "Eubacterium_sulci -0.50215006 0.48174526 -0.537480409"
## [2622] "Mogibacterium_diversum 4.02611962 0.25473381 -2.505219247"
## [2623] "Mogibacterium_pumilum -0.04812033 1.11499615 -0.382231594"
## [2624] "Mogibacterium_timidum -1.25201966 2.14425460 -1.586130929"
## [2625] "Lachnoanaerobaculum_saburreum -4.27712957 3.74787563 -0.361038126"
## [2626] "Oribacterium_parvum 0.40924395 -0.97239627 1.442599251"
## [2627] "Oribacterium_sinus 1.01378852 0.85929180 -2.864557839"
## [2628] "Oribacterium_sp_oral_taxon_078 0.54882638 1.93449371 0.214715112"
## [2629] "Stomatobaculum_longum 2.74561747 -1.90388418 -1.666251390"
## [2630] "Peptostreptococcus_stomatis -0.35750278 0.50578361 0.464534657"
## [2631] "Bulleidia_extructa -1.60505554 0.08223280 0.832301837"
## [2632] "Solobacterium_moorei -3.54380472 1.47440895 0.268607628"
## [2633] "Limnochorda_pilosa -0.52559481 0.94508773 0.187582314"
## [2634] "Veillonella_atypica 4.16517206 -4.46034986 1.813600356"
## [2635] "Veillonella_dispar 1.89286535 -0.68394085 1.866664750"
## [2636] "Veillonella_infantium 1.75838967 -2.84671005 -1.162629817"
## [2637] "Veillonella_parvula -1.74078646 0.47467126 0.230471888"
## [2638] "Veillonella_sp_T11011_6 4.62168936 -3.24160854 -1.899187075"
## [2639] "Parvimonas_micra 1.06922824 1.39713189 -1.376607010"
## [2640] "Parvimonas_sp_oral_taxon_110 -2.44590936 1.56946384 -1.641948737"
## [2641] "Parvimonas_sp_oral_taxon_393 -1.82538608 1.32633538 -0.836552223"
## [2642] "Fusobacterium_nucleatum -0.30129403 2.74817775 0.285628736"
## [2643] "Leptotrichia_wadei 2.98505645 -1.07044012 -1.360357229"
## [2644] "Gemmata_obscuriglobus 0.61974000 -3.55041921 0.285628736"
## [2645] "Paludisphaera_borealis -0.53120761 1.02844774 0.312456715"
## [2646] "Achromobacter_xylosoxidans 0.04911389 0.13701743 0.082980147"
## [2647] "Cupriavidus_sp -4.60618124 0.58886914 0.285628736"
## [2648] "Sutterella_parvirubra 2.26483667 0.69589787 0.285628736"
## [2649] "Anaerobiospirillum_thomasii 0.61974000 1.32075985 0.285628736"
## [2650] "Cardiobacterium_hominis 0.55659252 -1.37644495 1.822618215"
## [2651] "Cardiobacterium_valvarum 0.45434880 -1.48690170 1.499374076"
## [2652] "Alkalilimnicola_ehrlichii -0.20647102 -2.28888490 -0.284316455"
## [2653] "Escherichia_coli 0.25653858 -0.06319931 0.076286310"
## [2654] "Thiohalorhabdus_denitrificans 2.22450776 -0.44878180 -1.914387758"
## [2655] "Pseudomonas_aeruginosa 0.79036847 -0.87909318 -0.349967674"
## [2656] "Acholeplasma_oculi 0.37613956 1.87424993 0.042028293"
## [2657] "Candida_parapsilosis 0.32182603 -0.01116337 1.938433654"
## [2658] "Nakamurella_silvestris 0.77090121 -2.60133213 0.436789944"
## [2659] "Prevotella_jejuni -0.51289916 -0.45861486 0.131059394"
## [2660] "Prevotella_pallens 0.05935240 -2.28280435 -0.205543680"
## [2661] "Prevotella_salivae -0.88174714 3.28943920 -1.134930882"
## [2662] "Tannerella_sp_oral_taxon_HOT_286 -0.68254941 -2.71800159 1.898826032"
## [2663] "Capnocytophaga_gingivalis -0.96368272 1.93421511 0.416655894"
## [2664] "Lactobacillus_gasseri -0.56163195 -0.86229927 0.568494496"
## [2665] "Sharpea_azabuensis 0.63017530 -2.61145261 0.296064033"
## [2666] "Streptococcus_mutans -3.35794773 2.06635502 -0.364998364"
## [2667] "Oribacterium_asaccharolyticum -1.52563089 1.88896583 -1.859742154"
## [2668] "Megasphaera_micronuciformis 0.54986243 -1.24000382 0.066213134"
## [2669] "Neisseria_flavescens 2.10692216 1.05045743 -1.504372215"
## [2670] "Neisseria_subflava 3.68066904 -2.97452754 -1.643298271"
## [2671] "Stenotrophomonas_maltophilia -1.65977227 2.52776609 -0.016587745"
## [2672] "Stenotrophomonas_pavanii 2.26422073 -2.67776229 0.544794060"
## [2673] "Stenotrophomonas_rhizophila 0.34515837 -2.03342185 -0.031094584"
## [2674] "Streptococcus_sobrinus 1.88812638 -1.74941135 1.554015114"
## [2675] "Eggerthia_catenaformis -2.10361011 3.38194552 -1.156345375"
## [2676] "Haemophilus_parainfluenzae 0.64047579 -0.71105668 -0.773268013"
## [2677] " CFB_c_benzonase CFB_b_qiaamp CFB_b_molysis"
## [2678] "Actinobaculum_sp_oral_taxon_183 1.59542428 1.22051925 4.95838169"
## [2679] "Actinomyces_georgiae -0.42415808 3.54254891 0.95395754"
## [2680] "Actinomyces_graevenitzii 0.25941348 -0.40805164 -0.07728268"
## [2681] "Actinomyces_hongkongensis -0.45453606 3.22468127 0.48921271"
## [2682] "Actinomyces_johnsonii -1.31076837 0.08812720 0.05234402"
## [2683] "Actinomyces_massiliensis -3.65905879 3.40406109 0.53900448"
## [2684] "Actinomyces_meyeri -2.23513412 1.91854522 -0.15348136"
## [2685] "Actinomyces_naeslundii -3.41469994 -0.57436719 -0.22200109"
## [2686] "Actinomyces_odontolyticus 1.32483421 -0.60651051 -0.25972640"
## [2687] "Actinomyces_oris -1.02231096 -0.76122234 -1.20759661"
## [2688] "Actinomyces_sp_HMSC035G02 0.89007723 -0.27259350 -0.05971432"
## [2689] "Actinomyces_sp_HPA0247 1.12124600 -0.53612301 -0.12324334"
## [2690] "Actinomyces_sp_ICM47 0.43484976 -0.35213362 -0.09867958"
## [2691] "Actinomyces_sp_S6_Spd3 1.03959745 -0.98512547 -0.75221295"
## [2692] "Actinomyces_sp_oral_taxon_170 -1.54581872 0.08104412 -0.54146092"
## [2693] "Actinomyces_sp_oral_taxon_180 -0.77844213 -0.68758567 -0.22559928"
## [2694] "Actinomyces_sp_oral_taxon_181 1.26714222 -0.73198610 -0.66111460"
## [2695] "Actinomyces_sp_oral_taxon_414 -1.82337958 -1.37628009 2.59673044"
## [2696] "Actinomyces_sp_oral_taxon_448 -0.79879679 2.94542921 2.89636926"
## [2697] "Actinomyces_sp_oral_taxon_897 -0.80791388 3.24487872 2.46389321"
## [2698] "Actinomyces_viscosus 1.13478484 -1.42699698 0.29768952"
## [2699] "Aeriscardovia_aeriphila 1.21475101 -1.17624261 -0.10239123"
## [2700] "Alloscardovia_omnicolens 1.49311737 0.67349281 1.06280253"
## [2701] "Bifidobacterium_dentium -2.77156237 2.05293181 1.24172859"
## [2702] "Bifidobacterium_longum -2.11815480 2.27628455 1.08378642"
## [2703] "Scardovia_wiggsiae 1.09154158 -0.74091970 -0.62126585"
## [2704] "Corynebacterium_atypicum -0.53424001 -1.60730229 1.42705693"
## [2705] "Corynebacterium_durum -2.46241790 0.34348754 0.78018580"
## [2706] "Corynebacterium_matruchotii -1.20766136 4.30138758 1.78481818"
## [2707] "Rothia_aeria -2.23315481 0.27398240 -1.36139429"
## [2708] "Rothia_dentocariosa -0.48933075 -0.31866901 -0.23502881"
## [2709] "Rothia_mucilaginosa 0.11609109 -0.69820054 -0.55967745"
## [2710] "Cutibacterium_acnes -0.59115442 1.93019232 0.80031080"
## [2711] "Propionibacterium_acidifaciens 0.04002298 1.71576690 2.61214074"
## [2712] "Pseudopropionibacterium_propionicum 0.75832692 -0.13701292 -0.30210468"
## [2713] "Atopobium_deltae -0.18680676 3.40038968 1.54661744"
## [2714] "Atopobium_parvulum 0.59844021 -0.39468492 -0.29176651"
## [2715] "Atopobium_rimae 0.68718734 -0.58006170 -0.61643300"
## [2716] "Olsenella_profusa -2.61340040 0.26839207 -0.51422036"
## [2717] "Olsenella_scatoligenes -0.40494003 -0.23042844 -0.38171578"
## [2718] "Olsenella_uli -2.33461976 -0.30072967 -0.03370137"
## [2719] "Collinsella_aerofaciens -0.36496273 -0.93296059 -0.47161952"
## [2720] "Collinsella_intestinalis 0.58140247 0.16572884 -0.28214382"
## [2721] "Collinsella_stercoris -2.49516125 -0.39527526 -0.34225341"
## [2722] "Enorma_massiliensis -1.46478505 -0.08660373 0.07997637"
## [2723] "X.Collinsella._massiliensis 0.19626637 -0.52624308 -0.01175913"
## [2724] "Asaccharobacter_celatus -0.58127023 -2.26520067 0.61207466"
## [2725] "Denitrobacterium_detoxificans -0.59115442 1.05289620 0.37830529"
## [2726] "Enterorhabdus_caecimuris -0.23687924 -2.07261271 0.74260950"
## [2727] "Slackia_exigua 0.94547825 -0.78917098 -0.12650420"
## [2728] "Slackia_isoflavoniconvertens 1.37517864 -0.53106582 0.18322613"
## [2729] "Rubrobacter_radiotolerans -0.56691557 -1.72649922 1.21913418"
## [2730] "Thermoleophilum_album -3.69415424 -0.19902794 -0.36922933"
## [2731] "Porphyromonas_endodontalis -2.10332153 1.72896680 -3.28692151"
## [2732] "Porphyromonas_somerae -1.67969552 -5.01802492 -0.40656879"
## [2733] "Prevotella_histicola 1.53835998 2.29654457 -5.08587327"
## [2734] "Prevotella_melaninogenica 1.81337194 -0.21256712 -5.10297877"
## [2735] "Kouleothrix_aurantiaca 2.85417294 -1.34942052 -0.92578366"
## [2736] "Hydrogenibacillus_schlegelii -0.30656577 -1.88490888 -4.30945568"
## [2737] "Gemella_bergeri 1.68116325 -0.76059553 -1.10371979"
## [2738] "Gemella_haemolysans -0.87661396 -0.79010388 -0.04205050"
## [2739] "Gemella_morbillorum 0.85314577 -0.69140212 -0.24805781"
## [2740] "Gemella_sanguinis 0.14257878 -0.92376375 -0.57586776"
## [2741] "Brochothrix_campestris -1.50836409 -1.30152071 0.40656875"
## [2742] "Staphylococcus_argenteus 0.62523464 0.88523622 1.08241926"
## [2743] "Staphylococcus_aureus 1.42645213 1.21106171 -0.49765603"
## [2744] "Staphylococcus_epidermidis -0.75517033 2.52960356 2.32774916"
## [2745] "Staphylococcus_schweitzeri 0.44508081 0.34683166 0.86063965"
## [2746] "Abiotrophia_defectiva 2.17552804 -0.06897165 -0.64690022"
## [2747] "Abiotrophia_sp_HMSC24B09 1.68828596 -4.01902314 0.41285973"
## [2748] "Granulicatella_adiacens 0.50141897 -1.02725534 -0.91430557"
## [2749] "Granulicatella_elegans 0.20661990 -0.90053241 -0.59401652"
## [2750] "Enterococcus_faecalis -0.19134216 -1.24582513 -1.24608802"
## [2751] "Lactobacillus_rhamnosus -0.09459132 -2.14340692 -0.18003265"
## [2752] "Streptococcus_anginosus -0.08534587 -0.82253165 -0.51742935"
## [2753] "Streptococcus_australis -1.35015981 -0.74687044 -0.48553742"
## [2754] "Streptococcus_cristatus 1.99946741 0.84518105 0.23427322"
## [2755] "Streptococcus_gordonii 0.84139256 -0.41281423 -0.45016102"
## [2756] "Streptococcus_infantis -0.35931906 -0.75617043 -0.65105690"
## [2757] "Streptococcus_milleri -2.38032731 1.63840464 2.89312689"
## [2758] "Streptococcus_mitis -0.44294888 -0.43127837 -0.26708227"
## [2759] "Streptococcus_oralis -0.26471038 -0.48502906 -0.32451914"
## [2760] "Streptococcus_parasanguinis -0.13325729 -0.40313498 -0.03423030"
## [2761] "Streptococcus_peroris 0.58816905 -4.42273578 0.17673587"
## [2762] "Streptococcus_pneumoniae -2.93053448 -3.43137925 -1.12022480"
## [2763] "Streptococcus_pseudopneumoniae -4.70330720 0.98944359 -0.74082227"
## [2764] "Streptococcus_salivarius -0.31541204 -0.91463101 -0.60311375"
## [2765] "Streptococcus_sanguinis 0.70782180 0.55267934 -0.39821029"
## [2766] "Streptococcus_sp_A12 1.58906269 -1.05767473 -0.15516947"
## [2767] "Streptococcus_sp_F0442 0.56403730 -0.96873299 -0.47789675"
## [2768] "Streptococcus_sp_HMSC034E03 2.27478359 1.90138905 -0.98533597"
## [2769] "Streptococcus_sp_HMSC067H01 -1.88490890 1.25161949 -0.74065403"
## [2770] "Streptococcus_sp_HMSC071D03 -1.15730432 3.90220628 0.19655935"
## [2771] "Streptococcus_sp_HPH0090 1.14882348 0.76302769 -2.37672564"
## [2772] "Streptococcus_sp_M334 0.33937387 -2.94539348 2.87748072"
## [2773] "Streptococcus_vestibularis 2.92196430 -0.82873430 -0.29754373"
## [2774] "Eubacterium_brachy 0.79684918 0.39804521 -0.28974568"
## [2775] "Eubacterium_infirmum -2.77114200 0.38292573 -0.48177445"
## [2776] "Eubacterium_nodatum -2.00783868 1.96703940 3.16278748"
## [2777] "Eubacterium_sulci -1.33424473 0.98353869 1.67156748"
## [2778] "Mogibacterium_diversum 0.39586773 0.43478433 0.02543602"
## [2779] "Mogibacterium_pumilum 1.16633893 0.97578981 0.64985959"
## [2780] "Mogibacterium_timidum 0.41432427 0.59032640 1.01989907"
## [2781] "Lachnoanaerobaculum_saburreum 0.14554252 -1.78361382 -0.63647033"
## [2782] "Oribacterium_parvum -1.26050826 1.39488345 1.67843175"
## [2783] "Oribacterium_sinus 0.93007435 -0.11324165 -0.38779392"
## [2784] "Oribacterium_sp_oral_taxon_078 -0.66206804 -2.62727178 0.58619521"
## [2785] "Stomatobaculum_longum 1.31613104 -0.08025648 -5.19800791"
## [2786] "Peptostreptococcus_stomatis -3.00143864 -0.76413168 0.46039613"
## [2787] "Bulleidia_extructa 1.09232863 0.51953228 -0.26749988"
## [2788] "Solobacterium_moorei 0.95993809 -1.56603542 -1.35416170"
## [2789] "Limnochorda_pilosa -0.48785634 -1.49697667 -0.15471622"
## [2790] "Veillonella_atypica 1.55383395 -2.51966040 -0.44257667"
## [2791] "Veillonella_dispar 1.30984504 1.49139043 -1.54164651"
## [2792] "Veillonella_infantium 3.07499134 -0.87507929 -0.41960141"
## [2793] "Veillonella_parvula 1.90844775 -3.17531738 -0.71792589"
## [2794] "Veillonella_sp_T11011_6 1.86561856 -0.71656580 1.64468684"
## [2795] "Parvimonas_micra 0.25410337 -0.58512374 -0.52413227"
## [2796] "Parvimonas_sp_oral_taxon_110 1.84447472 -4.49929021 2.23765488"
## [2797] "Parvimonas_sp_oral_taxon_393 0.80297466 0.22876801 -0.30894944"
## [2798] "Fusobacterium_nucleatum 3.05267671 3.49459870 -0.20424931"
## [2799] "Leptotrichia_wadei 4.84898558 0.11366895 -3.51511900"
## [2800] "Gemmata_obscuriglobus -0.59115442 3.60410775 -0.25189812"
## [2801] "Paludisphaera_borealis -0.56432644 1.35950413 -0.27046267"
## [2802] "Achromobacter_xylosoxidans -1.23785121 0.54112568 0.51674385"
## [2803] "Cupriavidus_sp -0.31201196 -0.19727989 -0.30552542"
## [2804] "Sutterella_parvirubra 0.55031869 -1.77526398 -0.27448436"
## [2805] "Anaerobiospirillum_thomasii -1.80668287 -2.17935262 -1.20009352"
## [2806] "Cardiobacterium_hominis -0.57152565 2.23070710 1.92872268"
## [2807] "Cardiobacterium_valvarum -0.51344360 1.92135853 2.53676080"
## [2808] "Alkalilimnicola_ehrlichii 2.13724919 -2.98799604 0.85990214"
## [2809] "Escherichia_coli -1.09176122 0.22979857 0.69551268"
## [2810] "Thiohalorhabdus_denitrificans -0.00602548 -2.41816792 -1.08323954"
## [2811] "Pseudomonas_aeruginosa 0.08261126 -0.38422871 -0.79095121"
## [2812] "Acholeplasma_oculi -1.81728584 -0.39317757 -0.12192740"
## [2813] "Candida_parapsilosis -1.31323445 2.00577459 2.66977939"
## [2814] "Nakamurella_silvestris -0.43999321 -1.82360186 1.85556619"
## [2815] "Prevotella_jejuni 1.82526804 1.42359372 -0.15971331"
## [2816] "Prevotella_pallens 1.98645560 0.50373126 -0.25993318"
## [2817] "Prevotella_salivae 1.56968572 1.07665015 0.82629698"
## [2818] "Tannerella_sp_oral_taxon_HOT_286 -1.78653096 -2.65227900 -2.77816186"
## [2819] "Capnocytophaga_gingivalis -1.88614696 1.45787573 -0.90446148"
## [2820] "Lactobacillus_gasseri -1.76401445 2.19123446 1.38655635"
## [2821] "Sharpea_azabuensis -0.58071912 2.91223594 0.92420169"
## [2822] "Streptococcus_mutans -1.26927767 0.97010771 0.03086650"
## [2823] "Oribacterium_asaccharolyticum 2.22978878 -1.92797370 -1.59637098"
## [2824] "Megasphaera_micronuciformis 1.94000544 -0.64649987 2.77691961"
## [2825] "Neisseria_flavescens 0.72707894 1.23971471 -1.84396417"
## [2826] "Neisseria_subflava 1.25091809 0.55857702 -2.21489157"
## [2827] "Stenotrophomonas_maltophilia 3.13655980 0.42547657 -0.07744536"
## [2828] "Stenotrophomonas_pavanii -1.90749369 -3.08955989 -1.50388455"
## [2829] "Stenotrophomonas_rhizophila 2.70356494 -2.37418931 -0.50689392"
## [2830] "Streptococcus_sobrinus -0.85563737 2.75318053 4.52599990"
## [2831] "Eggerthia_catenaformis -0.37090803 3.37577751 -3.40321789"
## [2832] "Haemophilus_parainfluenzae 1.74032161 -1.39295222 -1.86693074"
## [2833] " CFB_b_lyPMA CFB_b_host_zero CFB_b_control"
## [2834] "Actinobaculum_sp_oral_taxon_183 -2.548204992 1.916444790 -0.100759676"
## [2835] "Actinomyces_georgiae -2.416652328 2.618289171 0.030792988"
## [2836] "Actinomyces_graevenitzii 1.124310776 -0.755287307 -1.266568829"
## [2837] "Actinomyces_hongkongensis -2.391735732 2.332396405 0.055709584"
## [2838] "Actinomyces_johnsonii 2.171150875 -0.351519400 -1.093766243"
## [2839] "Actinomyces_massiliensis -3.231820197 2.121025965 -0.784374881"
## [2840] "Actinomyces_meyeri 0.245268403 -0.140625976 -0.706082474"
## [2841] "Actinomyces_naeslundii -2.241133494 -0.855613790 0.206311822"
## [2842] "Actinomyces_odontolyticus 1.167297774 -0.633121947 0.259490852"
## [2843] "Actinomyces_oris 0.169904874 -0.784499171 -0.974780335"
## [2844] "Actinomyces_sp_HMSC035G02 1.906569892 -0.345298560 -1.472242414"
## [2845] "Actinomyces_sp_HPA0247 1.038874650 -0.606866074 0.882060708"
## [2846] "Actinomyces_sp_ICM47 2.344786492 -0.287338739 -1.272262438"
## [2847] "Actinomyces_sp_S6_Spd3 1.657958158 -0.691584497 0.355770620"
## [2848] "Actinomyces_sp_oral_taxon_170 -2.329239771 -0.439006679 0.118205545"
## [2849] "Actinomyces_sp_oral_taxon_180 1.905603838 -0.367419872 0.094641171"
## [2850] "Actinomyces_sp_oral_taxon_181 1.853192316 -0.842288868 0.029407743"
## [2851] "Actinomyces_sp_oral_taxon_414 -2.260399829 2.368083229 0.187045487"
## [2852] "Actinomyces_sp_oral_taxon_448 -1.794065682 2.164078332 -4.248115713"
## [2853] "Actinomyces_sp_oral_taxon_897 -4.817873568 3.538486675 -2.370428252"
## [2854] "Actinomyces_viscosus -3.095804130 0.778688698 0.082367188"
## [2855] "Aeriscardovia_aeriphila 0.124011688 -0.984053640 0.436711643"
## [2856] "Alloscardovia_omnicolens -2.506457225 0.698954986 -0.059011909"
## [2857] "Bifidobacterium_dentium -1.320102682 1.772960017 -2.572635617"
## [2858] "Bifidobacterium_longum -3.479628730 2.973682604 -1.032183414"
## [2859] "Scardovia_wiggsiae 1.660673641 -0.358121807 -0.246738979"
## [2860] "Corynebacterium_atypicum -2.308866865 0.249710673 0.138578450"
## [2861] "Corynebacterium_durum -1.950857988 -0.198837681 1.831246922"
## [2862] "Corynebacterium_matruchotii -0.109968874 2.030118288 -1.531549083"
## [2863] "Rothia_aeria 2.954969428 -1.171737035 -1.427495575"
## [2864] "Rothia_dentocariosa 0.402179252 -0.324308547 -0.228909120"
## [2865] "Rothia_mucilaginosa -0.182599177 -0.346152964 1.831703161"
## [2866] "Cutibacterium_acnes -2.352804145 1.418235631 0.094641171"
## [2867] "Propionibacterium_acidifaciens -3.264193226 1.452385201 -0.816747911"
## [2868] "Pseudopropionibacterium_propionicum 1.475074871 -0.394772871 -0.093398584"
## [2869] "Atopobium_deltae -2.180190228 -1.766440852 0.267255088"
## [2870] "Atopobium_parvulum 1.458602139 -0.291058593 -1.101156769"
## [2871] "Atopobium_rimae 3.165983425 -0.797143915 0.053149252"
## [2872] "Olsenella_profusa 2.231926492 -0.094052126 -1.486997417"
## [2873] "Olsenella_scatoligenes 3.283489768 -0.663020953 -0.269930615"
## [2874] "Olsenella_uli 2.531663033 -0.370871818 -2.123912509"
## [2875] "Collinsella_aerofaciens 2.413379700 -0.258944264 0.094641171"
## [2876] "Collinsella_intestinalis 1.163044442 -0.598724436 -0.123098518"
## [2877] "Collinsella_stercoris 1.789150692 -0.362549099 -0.326429972"
## [2878] "Enorma_massiliensis 1.110579379 -0.301674366 0.243516914"
## [2879] "X.Collinsella._massiliensis 2.654861026 -0.538805772 0.094641171"
## [2880] "Asaccharobacter_celatus -2.247650384 0.796202065 0.199794932"
## [2881] "Denitrobacterium_detoxificans -2.352804145 0.645471704 0.094641171"
## [2882] "Enterorhabdus_caecimuris -1.991829032 1.450239804 0.455616284"
## [2883] "Slackia_exigua 2.761713976 -1.024374802 -0.844303491"
## [2884] "Slackia_isoflavoniconvertens 2.155027538 -0.167398761 0.094641171"
## [2885] "Rubrobacter_radiotolerans -2.273859655 3.143285764 0.173585660"
## [2886] "Thermoleophilum_album 0.002741478 -0.007996967 0.074947596"
## [2887] "Porphyromonas_endodontalis 1.629720907 -0.217554550 -1.188021074"
## [2888] "Porphyromonas_somerae 0.656349776 0.603552498 0.993335771"
## [2889] "Prevotella_histicola -0.228046748 -0.287029164 3.434377969"
## [2890] "Prevotella_melaninogenica 0.929164661 0.493160467 2.722800096"
## [2891] "Kouleothrix_aurantiaca -1.757501113 1.495500437 0.689944203"
## [2892] "Hydrogenibacillus_schlegelii -1.098853922 1.901853959 1.348591394"
## [2893] "Gemella_bergeri 3.361457776 -0.204687064 0.094641171"
## [2894] "Gemella_haemolysans -0.065593629 -0.435391439 1.289766901"
## [2895] "Gemella_morbillorum 1.157937291 -0.836941454 0.094641171"
## [2896] "Gemella_sanguinis -0.067867122 -0.995308361 1.537788486"
## [2897] "Brochothrix_campestris -0.991710570 -1.780493554 1.455734746"
## [2898] "Staphylococcus_argenteus 0.751922096 -1.270765659 -0.860339318"
## [2899] "Staphylococcus_aureus 1.143398399 -0.974743811 -0.560578059"
## [2900] "Staphylococcus_epidermidis -0.272363638 1.417488857 -4.223048824"
## [2901] "Staphylococcus_schweitzeri 3.711807114 -0.448675525 0.522631168"
## [2902] "Abiotrophia_defectiva -0.343746114 -0.177382415 2.103699202"
## [2903] "Abiotrophia_sp_HMSC24B09 0.366387814 0.015646296 2.813833130"
## [2904] "Granulicatella_adiacens 1.280902222 -0.647631551 0.349275767"
## [2905] "Granulicatella_elegans 0.775177982 -0.864101753 0.670911596"
## [2906] "Enterococcus_faecalis -1.225625290 -2.914549492 1.221820026"
## [2907] "Lactobacillus_rhamnosus -0.651545743 -4.246703124 1.795899573"
## [2908] "Streptococcus_anginosus 2.575829688 -1.010256521 0.094641171"
## [2909] "Streptococcus_australis 1.541249917 -0.417510316 0.127845391"
## [2910] "Streptococcus_cristatus 2.919587100 -0.813724426 -2.510755273"
## [2911] "Streptococcus_gordonii 1.032295477 -0.749102519 -0.293826904"
## [2912] "Streptococcus_infantis -0.021022615 -0.610110170 -0.783400243"
## [2913] "Streptococcus_milleri -0.523679483 0.190210283 -3.105025264"
## [2914] "Streptococcus_mitis 0.065103858 -1.044199535 2.104163540"
## [2915] "Streptococcus_oralis 1.662172462 -0.761458284 -2.367841365"
## [2916] "Streptococcus_parasanguinis 0.068017936 -0.421527872 1.206077753"
## [2917] "Streptococcus_peroris 3.409468767 -0.757709100 3.291296151"
## [2918] "Streptococcus_pneumoniae 4.545514695 1.690454075 -0.853633886"
## [2919] "Streptococcus_pseudopneumoniae 1.983699171 -1.672464790 -0.267697929"
## [2920] "Streptococcus_salivarius 1.268830605 -1.342594867 2.423347574"
## [2921] "Streptococcus_sanguinis 0.191121073 0.359723502 -0.772205161"
## [2922] "Streptococcus_sp_A12 2.411136297 -0.698388057 -0.614367798"
## [2923] "Streptococcus_sp_F0442 0.541742985 -0.802272549 0.632914840"
## [2924] "Streptococcus_sp_HMSC034E03 1.421673619 1.024093987 -2.145531296"
## [2925] "Streptococcus_sp_HMSC067H01 2.552153306 0.897635685 -2.602689955"
## [2926] "Streptococcus_sp_HMSC071D03 3.337993303 0.782830453 -0.526128701"
## [2927] "Streptococcus_sp_HPH0090 2.378839411 0.694073115 0.028940966"
## [2928] "Streptococcus_sp_M334 2.370072709 -3.746657242 2.405461952"
## [2929] "Streptococcus_vestibularis 1.079464122 -0.350206875 -1.383175801"
## [2930] "Eubacterium_brachy 1.643886486 0.528566414 -1.753250613"
## [2931] "Eubacterium_infirmum -2.352804145 -0.814025926 0.094641171"
## [2932] "Eubacterium_nodatum -4.437018101 1.996104008 -1.989572785"
## [2933] "Eubacterium_sulci -3.345772782 0.562325323 -0.599546547"
## [2934] "Mogibacterium_diversum -2.668835408 0.085204051 -0.157126006"
## [2935] "Mogibacterium_pumilum -2.399434041 0.733848527 0.048011275"
## [2936] "Mogibacterium_timidum -2.504400437 0.884046363 -0.056955121"
## [2937] "Lachnoanaerobaculum_saburreum 3.563999694 -5.804031874 1.354035376"
## [2938] "Oribacterium_parvum -0.288348313 0.179228634 -3.310769249"
## [2939] "Oribacterium_sinus 0.204798623 -0.136004495 -0.752308213"
## [2940] "Oribacterium_sp_oral_taxon_078 -1.946224741 0.227514114 0.501220575"
## [2941] "Stomatobaculum_longum 2.442644052 -0.497626470 0.890325760"
## [2942] "Peptostreptococcus_stomatis 1.624497140 -1.895337690 -0.552652357"
## [2943] "Bulleidia_extructa 1.063996836 -0.585701260 -0.941114008"
## [2944] "Solobacterium_moorei 0.671978784 -1.482651917 0.149553566"
## [2945] "Limnochorda_pilosa -2.822770591 -0.384935895 0.671963117"
## [2946] "Veillonella_atypica 0.575504827 0.516595835 2.320841130"
## [2947] "Veillonella_dispar -0.570292688 -0.087771495 1.679401922"
## [2948] "Veillonella_infantium 0.453290524 -2.672763864 0.161635806"
## [2949] "Veillonella_parvula 2.625884637 0.001297260 -0.173012644"
## [2950] "Veillonella_sp_T11011_6 -3.488205451 -2.275432928 0.217307970"
## [2951] "Parvimonas_micra 1.969286092 0.435758831 -0.734810742"
## [2952] "Parvimonas_sp_oral_taxon_110 2.153481320 -0.132985845 0.048639073"
## [2953] "Parvimonas_sp_oral_taxon_393 2.121145052 -0.414460951 -0.723190113"
## [2954] "Fusobacterium_nucleatum 1.331332004 -4.530665456 0.094641171"
## [2955] "Leptotrichia_wadei 2.518240912 0.007981952 0.868384280"
## [2956] "Gemmata_obscuriglobus -2.352804145 1.292422675 0.094641171"
## [2957] "Paludisphaera_borealis -3.493852737 0.487844190 0.131368170"
## [2958] "Achromobacter_xylosoxidans -1.552308119 0.166832570 1.263114721"
## [2959] "Cupriavidus_sp 3.115875090 -0.076622259 0.094641171"
## [2960] "Sutterella_parvirubra -0.760351207 0.731996280 0.094641171"
## [2961] "Anaerobiospirillum_thomasii -2.352804145 0.672600024 0.094641171"
## [2962] "Cardiobacterium_hominis 0.092471276 1.860258529 -3.860631236"
## [2963] "Cardiobacterium_valvarum -0.187446883 1.763796661 -3.256547726"
## [2964] "Alkalilimnicola_ehrlichii -2.576297944 2.481913660 0.127413208"
## [2965] "Escherichia_coli -1.342466559 -0.030967300 1.258837759"
## [2966] "Thiohalorhabdus_denitrificans -2.709915416 1.855233820 1.231063015"
## [2967] "Pseudomonas_aeruginosa -1.511504806 -0.027085708 1.601474768"
## [2968] "Acholeplasma_oculi -1.475698220 -0.415978626 0.971747096"
## [2969] "Candida_parapsilosis -0.398054349 2.344169611 -5.753484603"
## [2970] "Nakamurella_silvestris -2.253260251 0.640472538 0.194185065"
## [2971] "Prevotella_jejuni -1.247206096 -3.493510275 2.178309045"
## [2972] "Prevotella_pallens -1.494555109 -2.205474713 1.022105392"
## [2973] "Prevotella_salivae -0.252767889 -2.683316193 2.275604954"
## [2974] "Tannerella_sp_oral_taxon_HOT_286 1.929740117 2.443040976 -0.441011434"
## [2975] "Capnocytophaga_gingivalis -2.977154363 1.347641302 1.184740832"
## [2976] "Lactobacillus_gasseri -0.368480647 2.244454981 -3.777986176"
## [2977] "Sharpea_azabuensis -2.456589929 2.965643570 -0.009144613"
## [2978] "Streptococcus_mutans 0.333170974 1.664592396 -2.194836792"
## [2979] "Oribacterium_asaccharolyticum -0.781752713 -3.023479492 1.665692603"
## [2980] "Megasphaera_micronuciformis -1.580453305 -1.739082418 0.717453978"
## [2981] "Neisseria_flavescens -3.961282678 -2.087060179 3.500526041"
## [2982] "Neisseria_subflava -2.506362503 -1.128404742 1.353143962"
## [2983] "Stenotrophomonas_maltophilia -0.963143131 -0.678919497 1.778347336"
## [2984] "Stenotrophomonas_pavanii -1.746960405 2.556112397 -0.684830495"
## [2985] "Stenotrophomonas_rhizophila -1.813887932 -2.561231001 0.591415700"
## [2986] "Streptococcus_sobrinus -3.089203065 2.155841336 -0.641757749"
## [2987] "Eggerthia_catenaformis -0.110254764 3.781358463 -2.788313437"
## [2988] "Haemophilus_parainfluenzae -2.156804026 -1.877099358 4.609171451"
## [2989] " CFB_b_benzonase CFB_a_qiaamp CFB_a_molysis"
## [2990] "Actinobaculum_sp_oral_taxon_183 -5.205848252 -3.21203250 -3.831565195"
## [2991] "Actinomyces_georgiae -1.866414332 3.64243212 0.975899795"
## [2992] "Actinomyces_graevenitzii 0.715296967 -0.66866884 -0.216315868"
## [2993] "Actinomyces_hongkongensis -1.841497737 3.28966021 1.089837759"
## [2994] "Actinomyces_johnsonii 0.347041123 0.27202698 1.990530956"
## [2995] "Actinomyces_massiliensis 2.083832134 2.13702002 0.500302307"
## [2996] "Actinomyces_meyeri 1.965698954 2.12932559 0.124554564"
## [2997] "Actinomyces_naeslundii 3.039964242 -0.16758772 0.388897853"
## [2998] "Actinomyces_odontolyticus 0.260562908 -1.11905552 -0.563417262"
## [2999] "Actinomyces_oris -0.529841988 0.54821052 0.030695190"
## [3000] "Actinomyces_sp_HMSC035G02 0.547571612 -1.01684093 -0.324531061"
## [3001] "Actinomyces_sp_HPA0247 0.246856633 -1.09572137 -0.577860016"
## [3002] "Actinomyces_sp_ICM47 0.667064273 -1.17226549 -0.114907649"
## [3003] "Actinomyces_sp_S6_Spd3 0.204084521 -0.58270691 0.463219683"
## [3004] "Actinomyces_sp_oral_taxon_170 3.084944781 -0.44110881 0.092863599"
## [3005] "Actinomyces_sp_oral_taxon_180 0.415863346 1.16900966 0.652368969"
## [3006] "Actinomyces_sp_oral_taxon_181 0.422213685 -0.68176467 -0.080807651"
## [3007] "Actinomyces_sp_oral_taxon_414 -1.710161834 -0.34541478 -4.736487487"
## [3008] "Actinomyces_sp_oral_taxon_448 0.726585668 -1.03423309 -1.213821069"
## [3009] "Actinomyces_sp_oral_taxon_897 2.761040698 -3.28859495 1.900683911"
## [3010] "Actinomyces_viscosus 1.978094355 -0.40533706 -1.249119693"
## [3011] "Aeriscardovia_aeriphila -1.286945271 -0.14325631 0.542887303"
## [3012] "Alloscardovia_omnicolens 0.225965231 -3.45256819 -3.571578310"
## [3013] "Bifidobacterium_dentium 1.060351319 -1.36406321 -3.655689908"
## [3014] "Bifidobacterium_longum -0.782060766 -2.02422316 -3.755673515"
## [3015] "Scardovia_wiggsiae 0.795980982 -0.86044313 0.595591627"
## [3016] "Corynebacterium_atypicum -1.758628870 2.22654897 2.742474681"
## [3017] "Corynebacterium_durum -3.059732789 -0.39262743 -0.091595307"
## [3018] "Corynebacterium_matruchotii -3.428756404 -0.67771202 -5.317017583"
## [3019] "Rothia_aeria 3.821700778 -5.93795287 2.361588086"
## [3020] "Rothia_dentocariosa -0.285915665 -0.21539253 0.105743600"
## [3021] "Rothia_mucilaginosa -0.885750142 -1.39888638 -0.321100858"
## [3022] "Cutibacterium_acnes -1.802566150 1.30021774 -1.333595538"
## [3023] "Propionibacterium_acidifaciens 1.039123075 1.30867445 -4.882012124"
## [3024] "Pseudopropionibacterium_propionicum 0.023500032 0.28204665 -0.040458275"
## [3025] "Atopobium_deltae -1.629952233 -1.33195987 -2.239577689"
## [3026] "Atopobium_parvulum 0.304982669 -0.88203916 -0.261114443"
## [3027] "Atopobium_rimae 0.065990226 0.05698937 0.834893176"
## [3028] "Olsenella_profusa 0.651922045 -3.39545690 -1.339933137"
## [3029] "Olsenella_scatoligenes 0.125011930 -0.44424245 0.085500567"
## [3030] "Olsenella_uli 1.820338044 -3.50258655 -3.899830185"
## [3031] "Collinsella_aerofaciens -0.913810710 0.09484182 0.650567656"
## [3032] "Collinsella_intestinalis 1.214415261 0.04973835 -0.044911287"
## [3033] "Collinsella_stercoris 1.511868376 -0.22164611 0.225394273"
## [3034] "Enorma_massiliensis -2.614494616 -0.56443590 0.366279314"
## [3035] "X.Collinsella._massiliensis -0.293966669 -0.36777017 0.070869313"
## [3036] "Asaccharobacter_celatus -1.697412389 1.90580559 -0.526168499"
## [3037] "Denitrobacterium_detoxificans -1.802566150 0.37288291 0.034162618"
## [3038] "Enterorhabdus_caecimuris -1.441591037 2.07237658 -0.489865694"
## [3039] "Slackia_exigua 1.130192537 -0.04857261 0.100383574"
## [3040] "Slackia_isoflavoniconvertens -4.806046389 0.34270062 -0.381328917"
## [3041] "Rubrobacter_radiotolerans -1.723621660 3.25467381 -4.410452241"
## [3042] "Thermoleophilum_album 0.658918856 0.83190711 0.434507912"
## [3043] "Porphyromonas_endodontalis 2.045609489 -1.87124870 1.344805518"
## [3044] "Porphyromonas_somerae 2.221040705 -1.13336201 2.148994192"
## [3045] "Prevotella_histicola 0.468300350 -0.34604302 0.256449899"
## [3046] "Prevotella_melaninogenica 0.759022174 -0.11510279 2.740429156"
## [3047] "Kouleothrix_aurantiaca -3.501220776 2.95166294 0.008274728"
## [3048] "Hydrogenibacillus_schlegelii -0.548615927 1.50454467 0.511453855"
## [3049] "Gemella_bergeri -0.522302524 0.06694667 0.544967761"
## [3050] "Gemella_haemolysans -0.650012153 0.12286280 0.366380190"
## [3051] "Gemella_morbillorum 0.348049554 -0.73112661 0.500238419"
## [3052] "Gemella_sanguinis -0.535286917 -0.62777935 0.141513321"
## [3053] "Brochothrix_campestris -0.441472575 2.16621910 0.030744347"
## [3054] "Staphylococcus_argenteus -0.679771525 0.45830580 1.401866878"
## [3055] "Staphylococcus_aureus -0.373848043 0.05283260 -0.887901960"
## [3056] "Staphylococcus_epidermidis 0.480239922 -0.93155040 -1.051563123"
## [3057] "Staphylococcus_schweitzeri -5.403705178 0.06351784 1.048399591"
## [3058] "Abiotrophia_defectiva -2.385860640 -0.20826638 1.195581172"
## [3059] "Abiotrophia_sp_HMSC24B09 -1.695695065 0.90242214 0.806193622"
## [3060] "Granulicatella_adiacens 0.046332378 -0.09235372 0.291192340"
## [3061] "Granulicatella_elegans -0.778365741 -0.17935503 0.328257304"
## [3062] "Enterococcus_faecalis -0.675387294 4.78165690 -2.388645403"
## [3063] "Lactobacillus_rhamnosus -0.101307748 2.95857879 0.284226236"
## [3064] "Streptococcus_anginosus -0.921646894 1.02960050 1.007274822"
## [3065] "Streptococcus_australis -0.182548426 -1.83567465 -0.469361997"
## [3066] "Streptococcus_cristatus 1.045889561 -2.26945931 -3.822729083"
## [3067] "Streptococcus_gordonii 0.365564626 -0.02334094 0.124034447"
## [3068] "Streptococcus_infantis -1.043348332 -0.85230002 -0.410463792"
## [3069] "Streptococcus_milleri 0.470175023 -1.28330278 -0.648796332"
## [3070] "Streptococcus_mitis -0.477073466 -0.03558823 -0.449946028"
## [3071] "Streptococcus_oralis -0.616722449 -0.64242223 -0.724685967"
## [3072] "Streptococcus_parasanguinis -0.755883767 -0.44062849 0.216937170"
## [3073] "Streptococcus_peroris -5.300050704 -0.02673123 0.420987449"
## [3074] "Streptococcus_pneumoniae 2.746203493 -2.61645192 0.357859945"
## [3075] "Streptococcus_pseudopneumoniae 1.206223075 0.17062228 -0.408051150"
## [3076] "Streptococcus_salivarius -0.753977926 -0.82759385 -0.082970178"
## [3077] "Streptococcus_sanguinis -0.142566514 -0.35486150 -1.389732172"
## [3078] "Streptococcus_sp_A12 1.391457874 -0.33189199 0.603306537"
## [3079] "Streptococcus_sp_F0442 0.050635338 -0.24583471 -0.158353575"
## [3080] "Streptococcus_sp_HMSC034E03 0.580059085 2.03206224 -0.680865441"
## [3081] "Streptococcus_sp_HMSC067H01 1.431721137 2.04554457 -0.542200956"
## [3082] "Streptococcus_sp_HMSC071D03 -3.818231804 1.69348161 -1.153322803"
## [3083] "Streptococcus_sp_HPH0090 -1.213964396 1.25739331 0.589243836"
## [3084] "Streptococcus_sp_M334 -2.278208258 -1.74807865 -3.517416485"
## [3085] "Streptococcus_vestibularis 2.490949036 -0.22866000 -0.395693829"
## [3086] "Eubacterium_brachy 0.997533287 1.32079265 0.589200426"
## [3087] "Eubacterium_infirmum 0.280126146 1.72240350 0.909925678"
## [3088] "Eubacterium_nodatum 1.240189487 -2.21459399 -1.215319332"
## [3089] "Eubacterium_sulci 0.433594414 -0.01321435 0.688748709"
## [3090] "Mogibacterium_diversum 0.842753005 0.54129218 0.168554273"
## [3091] "Mogibacterium_pumilum 0.245125119 0.80880196 0.350173578"
## [3092] "Mogibacterium_timidum 0.229928728 -2.29415030 -3.450221530"
## [3093] "Lachnoanaerobaculum_saburreum 0.368247102 1.06198198 0.462025624"
## [3094] "Oribacterium_parvum 2.097320860 -0.74730765 -0.405064624"
## [3095] "Oribacterium_sinus 1.711470706 0.18924103 1.308013948"
## [3096] "Oribacterium_sp_oral_taxon_078 -1.395986746 1.11310979 -1.148484260"
## [3097] "Stomatobaculum_longum 1.082503459 0.53423150 1.094913106"
## [3098] "Peptostreptococcus_stomatis 2.037603992 0.34908155 -5.148712753"
## [3099] "Bulleidia_extructa 0.630799886 -0.90725764 0.223390958"
## [3100] "Solobacterium_moorei -0.325828128 0.12190744 0.865333626"
## [3101] "Limnochorda_pilosa 0.562949978 0.46413531 0.312772888"
## [3102] "Veillonella_atypica -0.495117274 2.98230667 0.437684282"
## [3103] "Veillonella_dispar -0.689757175 1.21035982 0.391290409"
## [3104] "Veillonella_infantium 1.425707135 2.30578821 -0.720093868"
## [3105] "Veillonella_parvula 0.451224840 1.83455125 -0.727810500"
## [3106] "Veillonella_sp_T11011_6 1.937916550 1.81755865 0.065074655"
## [3107] "Parvimonas_micra 0.198454275 0.54414860 -0.007875516"
## [3108] "Parvimonas_sp_oral_taxon_110 0.308680105 1.35726690 -3.864534333"
## [3109] "Parvimonas_sp_oral_taxon_393 0.283678137 0.36193729 0.128622968"
## [3110] "Fusobacterium_nucleatum 1.958404762 1.53170005 1.733241907"
## [3111] "Leptotrichia_wadei -2.800354531 -1.01347056 3.694507913"
## [3112] "Gemmata_obscuriglobus -1.802566150 -4.30184389 -0.040978673"
## [3113] "Paludisphaera_borealis -1.765839150 1.77461806 -0.340310043"
## [3114] "Achromobacter_xylosoxidans -1.078140809 -0.62024396 0.749983932"
## [3115] "Cupriavidus_sp 1.149458183 -1.40084229 -0.580526105"
## [3116] "Sutterella_parvirubra -0.410438244 2.77099809 -0.513669925"
## [3117] "Anaerobiospirillum_thomasii 3.059547645 4.38735265 0.080517309"
## [3118] "Cardiobacterium_hominis 0.311604272 -1.33410132 1.697730008"
## [3119] "Cardiobacterium_valvarum -0.609616959 -0.83160380 -0.891739397"
## [3120] "Alkalilimnicola_ehrlichii -0.391953769 1.35086826 0.204814754"
## [3121] "Escherichia_coli -0.929633943 -0.40568074 -0.174873111"
## [3122] "Thiohalorhabdus_denitrificans 1.320008110 1.24428469 -1.892645267"
## [3123] "Pseudomonas_aeruginosa -0.057487949 -0.77563843 0.235166364"
## [3124] "Acholeplasma_oculi -1.907991201 0.15211516 0.626568509"
## [3125] "Candida_parapsilosis 1.848847879 -1.00606328 -1.618693004"
## [3126] "Nakamurella_silvestris -1.703022256 3.17875684 3.290490298"
## [3127] "Prevotella_jejuni -3.382317206 -3.40278389 5.024108315"
## [3128] "Prevotella_pallens 1.407411468 -1.32895711 3.819364749"
## [3129] "Prevotella_salivae -3.039625079 0.64637921 3.741455964"
## [3130] "Tannerella_sp_oral_taxon_HOT_286 2.111619553 1.32216826 3.919363777"
## [3131] "Capnocytophaga_gingivalis -2.138486190 -0.74065963 3.133039599"
## [3132] "Lactobacillus_gasseri 0.147709657 -0.97265529 -1.742776057"
## [3133] "Sharpea_azabuensis -1.906351934 -2.46171523 0.504235076"
## [3134] "Streptococcus_mutans 0.625065723 1.13667256 1.063671465"
## [3135] "Oribacterium_asaccharolyticum 2.558365566 3.03714213 3.995325246"
## [3136] "Megasphaera_micronuciformis -0.002683786 0.58196938 2.827317110"
## [3137] "Neisseria_flavescens 0.834175600 -4.48641793 3.354760504"
## [3138] "Neisseria_subflava 1.239569295 -5.23977176 1.623599260"
## [3139] "Stenotrophomonas_maltophilia -0.073919600 1.49616872 3.044929330"
## [3140] "Stenotrophomonas_pavanii 3.836415139 2.35870850 -2.249330116"
## [3141] "Stenotrophomonas_rhizophila 4.988123395 3.14453284 -2.395482950"
## [3142] "Streptococcus_sobrinus -4.071834396 2.33671351 3.550362932"
## [3143] "Eggerthia_catenaformis 2.230962990 -2.73592249 2.198726819"
## [3144] "Haemophilus_parainfluenzae 1.371441937 1.16335394 5.152932124"
## [3145] " CFB_a_lyPMA CFB_a_host_zero CFB_a_control"
## [3146] "Actinobaculum_sp_oral_taxon_183 3.147422587 -3.391075069 2.91737040"
## [3147] "Actinomyces_georgiae -0.697718049 2.593360823 -0.92777023"
## [3148] "Actinomyces_graevenitzii -0.514179272 -0.628593979 2.42773261"
## [3149] "Actinomyces_hongkongensis -0.695166110 3.035218758 -0.92521829"
## [3150] "Actinomyces_johnsonii -2.530366215 0.937048299 -1.33232779"
## [3151] "Actinomyces_massiliensis -0.967513728 1.484809716 -1.19756591"
## [3152] "Actinomyces_meyeri -1.761801647 -0.049522914 -1.14215478"
## [3153] "Actinomyces_naeslundii -0.022337008 0.186545413 -0.25238919"
## [3154] "Actinomyces_odontolyticus 0.703587319 -0.620064389 2.01034577"
## [3155] "Actinomyces_oris -0.621161661 0.756840328 3.45508385"
## [3156] "Actinomyces_sp_HMSC035G02 0.791174559 -0.682947477 3.27879795"
## [3157] "Actinomyces_sp_HPA0247 1.541240091 -0.621310694 1.49298867"
## [3158] "Actinomyces_sp_ICM47 1.562167543 -0.919016233 4.04489051"
## [3159] "Actinomyces_sp_S6_Spd3 1.666402399 -0.251358490 -1.77389251"
## [3160] "Actinomyces_sp_oral_taxon_170 0.310713491 0.057648696 0.08066131"
## [3161] "Actinomyces_sp_oral_taxon_180 -1.657151989 0.608572357 -0.82260218"
## [3162] "Actinomyces_sp_oral_taxon_181 1.391584984 -0.405793357 -0.86629113"
## [3163] "Actinomyces_sp_oral_taxon_414 1.560406675 -3.738765313 1.33035449"
## [3164] "Actinomyces_sp_oral_taxon_448 0.824669337 -2.192264062 1.81999099"
## [3165] "Actinomyces_sp_oral_taxon_897 1.172597188 -3.420625383 0.94254501"
## [3166] "Actinomyces_viscosus -0.767236937 0.056919915 4.29778507"
## [3167] "Aeriscardovia_aeriphila 0.966648009 0.250081004 -0.90860131"
## [3168] "Alloscardovia_omnicolens 4.215117149 -3.841763554 3.98506497"
## [3169] "Bifidobacterium_dentium 1.638266922 -2.603611687 2.33320930"
## [3170] "Bifidobacterium_longum 2.721801244 -2.170666377 2.49174906"
## [3171] "Scardovia_wiggsiae 1.759452690 -0.248020727 -1.28673185"
## [3172] "Corynebacterium_atypicum -0.640901484 1.604389391 -0.87095367"
## [3173] "Corynebacterium_durum 3.012721054 -0.419152160 -2.55596950"
## [3174] "Corynebacterium_matruchotii 1.099155794 -3.814293898 1.83635999"
## [3175] "Rothia_aeria -0.543789713 0.417627358 0.93363568"
## [3176] "Rothia_dentocariosa 1.249870753 0.190743673 -1.89929878"
## [3177] "Rothia_mucilaginosa -0.530953094 -1.010399496 1.07401225"
## [3178] "Cutibacterium_acnes -0.592549993 0.782918341 -0.82260218"
## [3179] "Propionibacterium_acidifaciens 0.319950936 1.213451056 0.08989875"
## [3180] "Pseudopropionibacterium_propionicum 3.384037849 0.141633132 -1.79426166"
## [3181] "Atopobium_deltae 0.737213810 -1.027800522 0.50716163"
## [3182] "Atopobium_parvulum 0.182623918 -0.740722933 3.12200498"
## [3183] "Atopobium_rimae 3.079800758 0.434530057 -0.99314256"
## [3184] "Olsenella_profusa 1.861811572 -3.910093462 3.17335170"
## [3185] "Olsenella_scatoligenes -1.675332966 -0.153567588 -0.40516872"
## [3186] "Olsenella_uli 2.186303886 -3.970351739 3.73200692"
## [3187] "Collinsella_aerofaciens 1.932774339 0.149311775 -0.82260218"
## [3188] "Collinsella_intestinalis 1.388592457 -0.560813537 -0.92707643"
## [3189] "Collinsella_stercoris -1.631287199 -0.481915252 -0.72058289"
## [3190] "Enorma_massiliensis -1.463127447 -0.067388135 -0.86455268"
## [3191] "X.Collinsella._massiliensis -1.844466286 -0.332663730 -0.82260218"
## [3192] "Asaccharobacter_celatus -0.580007765 0.214971408 -0.81005995"
## [3193] "Denitrobacterium_detoxificans -0.592549993 0.355816608 -0.82260218"
## [3194] "Enterorhabdus_caecimuris -0.666370348 1.404492311 -0.89642253"
## [3195] "Slackia_exigua -0.271075623 -0.201165937 1.01223789"
## [3196] "Slackia_isoflavoniconvertens -1.719507914 -0.521016752 -0.82260218"
## [3197] "Rubrobacter_radiotolerans -0.229593187 -3.213787744 -0.45964537"
## [3198] "Thermoleophilum_album -2.565688761 0.885286109 -0.84024680"
## [3199] "Porphyromonas_endodontalis -0.708427428 -1.750217190 2.16153993"
## [3200] "Porphyromonas_somerae 1.575547516 0.130031641 -2.20699299"
## [3201] "Prevotella_histicola -1.783441249 1.138193478 0.49693913"
## [3202] "Prevotella_melaninogenica 0.067549932 -0.420249378 0.39762581"
## [3203] "Kouleothrix_aurantiaca -1.089723434 1.749956568 -1.31977562"
## [3204] "Hydrogenibacillus_schlegelii -0.841037611 1.820473876 -1.07108979"
## [3205] "Gemella_bergeri -2.021115473 0.214700586 -0.82260218"
## [3206] "Gemella_haemolysans -0.364167837 0.260945843 -0.44841157"
## [3207] "Gemella_morbillorum 1.016489655 -0.092081367 -0.82260218"
## [3208] "Gemella_sanguinis -0.276222597 -0.393567073 1.23560911"
## [3209] "Brochothrix_campestris -1.083168565 2.412314199 -1.31322075"
## [3210] "Staphylococcus_argenteus 0.837652318 0.051611304 -2.60321465"
## [3211] "Staphylococcus_aureus 0.354004743 -0.586321484 1.59123768"
## [3212] "Staphylococcus_epidermidis 0.442970097 -1.870284301 1.81245054"
## [3213] "Staphylococcus_schweitzeri -2.274011231 0.944424317 -1.09490810"
## [3214] "Abiotrophia_defectiva -1.312915932 0.224806391 -1.54296811"
## [3215] "Abiotrophia_sp_HMSC24B09 -1.548377493 0.106458457 -1.77842968"
## [3216] "Granulicatella_adiacens 0.949401878 0.163387598 -0.88746485"
## [3217] "Granulicatella_elegans 0.938949977 -0.003285979 -0.86328409"
## [3218] "Enterococcus_faecalis -0.972851209 2.982306170 -1.20290339"
## [3219] "Lactobacillus_rhamnosus -1.099836167 2.108301387 -1.32988835"
## [3220] "Streptococcus_anginosus 2.502628605 -0.699028823 -0.82260218"
## [3221] "Streptococcus_australis 1.013052391 -0.855473657 -0.16793428"
## [3222] "Streptococcus_cristatus 2.115680963 -3.530580714 3.85507570"
## [3223] "Streptococcus_gordonii 1.304409768 0.010512182 -2.11005749"
## [3224] "Streptococcus_infantis -0.269188260 -0.512105636 2.87721748"
## [3225] "Streptococcus_milleri 0.037701467 -2.605805116 2.92237559"
## [3226] "Streptococcus_mitis -0.002451301 -0.169404590 1.42277685"
## [3227] "Streptococcus_oralis 1.121147890 -0.253453303 3.21319744"
## [3228] "Streptococcus_parasanguinis -0.062237576 -0.210111708 0.85280802"
## [3229] "Streptococcus_peroris 1.681448763 -0.704933166 -1.42193150"
## [3230] "Streptococcus_pneumoniae -1.657859162 3.949459753 0.07373713"
## [3231] "Streptococcus_pseudopneumoniae -3.412825044 0.082605128 -0.36856421"
## [3232] "Streptococcus_salivarius 0.740226953 -0.396679463 2.14548591"
## [3233] "Streptococcus_sanguinis -0.259449985 0.119749239 2.90674008"
## [3234] "Streptococcus_sp_A12 2.922133705 -0.274741140 -2.18129443"
## [3235] "Streptococcus_sp_F0442 1.239090829 -0.167645737 -1.19603531"
## [3236] "Streptococcus_sp_HMSC034E03 1.155371303 1.939642429 -2.88103820"
## [3237] "Streptococcus_sp_HMSC067H01 -2.983149839 1.509799249 -1.31262988"
## [3238] "Streptococcus_sp_HMSC071D03 -2.418547509 -0.067541977 -1.07070786"
## [3239] "Streptococcus_sp_HPH0090 2.745833577 1.350819215 -1.69410352"
## [3240] "Streptococcus_sp_M334 -0.083617818 -1.938164938 3.71522047"
## [3241] "Streptococcus_vestibularis 1.087343606 0.789303472 3.31936463"
## [3242] "Eubacterium_brachy -2.230318093 1.490645164 1.03983116"
## [3243] "Eubacterium_infirmum -0.592549993 1.833772991 -0.82260218"
## [3244] "Eubacterium_nodatum 2.269324453 -2.440629095 2.03927227"
## [3245] "Eubacterium_sulci 1.520049404 -0.284860472 0.09487354"
## [3246] "Mogibacterium_diversum -2.999894813 0.193250351 2.77448834"
## [3247] "Mogibacterium_pumilum -0.896753439 0.783454075 -1.12680562"
## [3248] "Mogibacterium_timidum 2.431501971 -2.707953929 2.20144979"
## [3249] "Lachnoanaerobaculum_saburreum 0.141778091 2.238940098 -2.00977198"
## [3250] "Oribacterium_parvum 0.347528987 -1.581637803 1.48494337"
## [3251] "Oribacterium_sinus 0.664946609 0.023045470 -2.01178128"
## [3252] "Oribacterium_sp_oral_taxon_078 -0.459327097 0.291721627 -0.68937928"
## [3253] "Stomatobaculum_longum -0.628699720 2.286453915 0.53792285"
## [3254] "Peptostreptococcus_stomatis 0.650607809 0.153746803 1.57670433"
## [3255] "Bulleidia_extructa -0.408039987 -0.120203565 2.13337648"
## [3256] "Solobacterium_moorei 3.053138243 0.132047152 -0.89404160"
## [3257] "Limnochorda_pilosa -1.589749714 0.447268117 -0.77251350"
## [3258] "Veillonella_atypica -2.017261959 2.239986777 0.15332544"
## [3259] "Veillonella_dispar -1.101306909 0.425580714 0.95839090"
## [3260] "Veillonella_infantium -1.933911795 1.451569116 2.04494814"
## [3261] "Veillonella_parvula -3.999181594 0.257326113 2.98879073"
## [3262] "Veillonella_sp_T11011_6 -0.214424775 0.708625503 1.96808389"
## [3263] "Parvimonas_micra -4.230128980 1.354453313 0.55739240"
## [3264] "Parvimonas_sp_oral_taxon_110 -0.315329856 0.179758827 0.59268985"
## [3265] "Parvimonas_sp_oral_taxon_393 -0.516351644 0.391599020 0.57654129"
## [3266] "Fusobacterium_nucleatum -1.513584030 -4.949175013 -0.82260218"
## [3267] "Leptotrichia_wadei -2.619127482 -0.507980083 -0.14631155"
## [3268] "Gemmata_obscuriglobus -0.592549993 1.566028839 -0.82260218"
## [3269] "Paludisphaera_borealis -1.760654830 0.960472070 -0.81293142"
## [3270] "Achromobacter_xylosoxidans 0.076263430 -0.383359590 0.21418877"
## [3271] "Cupriavidus_sp 2.518158854 -0.851680407 -0.82260218"
## [3272] "Sutterella_parvirubra -3.709627256 0.937322104 -0.82260218"
## [3273] "Anaerobiospirillum_thomasii -0.592549993 0.254090467 -0.82260218"
## [3274] "Cardiobacterium_hominis -0.125513660 -2.606077701 1.24457111"
## [3275] "Cardiobacterium_valvarum 0.369626249 -2.119150813 1.51871061"
## [3276] "Alkalilimnicola_ehrlichii -1.836053867 1.186494872 -1.80984021"
## [3277] "Escherichia_coli 0.209671015 0.720125209 -0.63581717"
## [3278] "Thiohalorhabdus_denitrificans -2.123989678 2.147556493 -0.86050875"
## [3279] "Pseudomonas_aeruginosa -0.487646643 0.431643657 -0.04122286"
## [3280] "Acholeplasma_oculi -0.447451452 1.396681231 -0.67750363"
## [3281] "Candida_parapsilosis 0.268922659 -0.611593305 1.98958937"
## [3282] "Nakamurella_silvestris -0.776318359 1.967054429 -1.00637054"
## [3283] "Prevotella_jejuni 1.606706613 2.059758938 -2.53562487"
## [3284] "Prevotella_pallens 0.990479627 -0.427589939 0.48356670"
## [3285] "Prevotella_salivae 0.290342599 -1.247687445 -0.26341969"
## [3286] "Tannerella_sp_oral_taxon_HOT_286 0.521433763 0.698707832 -3.63688167"
## [3287] "Capnocytophaga_gingivalis 3.656438288 -0.088867783 -3.43141341"
## [3288] "Lactobacillus_gasseri 0.341302185 -0.506891696 1.57548771"
## [3289] "Sharpea_azabuensis -0.445480063 0.254001836 -0.67553225"
## [3290] "Streptococcus_mutans 1.494206065 1.424438375 -3.74157495"
## [3291] "Oribacterium_asaccharolyticum -1.181195871 0.663614854 -1.41124805"
## [3292] "Megasphaera_micronuciformis -1.355925631 0.450074572 -0.98782568"
## [3293] "Neisseria_flavescens 2.703488401 0.961071033 -2.11316291"
## [3294] "Neisseria_subflava 2.016782284 2.283197132 2.54040270"
## [3295] "Stenotrophomonas_maltophilia 0.550964284 1.042622873 -5.33564567"
## [3296] "Stenotrophomonas_pavanii -1.097074504 1.648246185 -2.71244209"
## [3297] "Stenotrophomonas_rhizophila 4.368677725 3.638954482 -2.57933936"
## [3298] "Streptococcus_sobrinus -3.130176606 3.400131971 -3.36022879"
## [3299] "Eggerthia_catenaformis 0.480141429 -2.723019301 1.53146524"
## [3300] "Haemophilus_parainfluenzae -1.454947580 3.182684977 -2.76463230"
## [3301] " CFB_a_benzonase"
## [3302] "Actinobaculum_sp_oral_taxon_183 -0.233918673"
## [3303] "Actinomyces_georgiae -0.871178053"
## [3304] "Actinomyces_graevenitzii 0.492856392"
## [3305] "Actinomyces_hongkongensis -0.868626115"
## [3306] "Actinomyces_johnsonii 1.183523460"
## [3307] "Actinomyces_massiliensis -0.194572208"
## [3308] "Actinomyces_meyeri 1.948448587"
## [3309] "Actinomyces_naeslundii -3.436023025"
## [3310] "Actinomyces_odontolyticus 0.697100145"
## [3311] "Actinomyces_oris 1.360327642"
## [3312] "Actinomyces_sp_HMSC035G02 0.879398084"
## [3313] "Actinomyces_sp_HPA0247 0.463522543"
## [3314] "Actinomyces_sp_ICM47 1.107328632"
## [3315] "Actinomyces_sp_S6_Spd3 1.247404728"
## [3316] "Actinomyces_sp_oral_taxon_170 -1.078733153"
## [3317] "Actinomyces_sp_oral_taxon_180 1.353927757"
## [3318] "Actinomyces_sp_oral_taxon_181 0.689567475"
## [3319] "Actinomyces_sp_oral_taxon_414 1.386946670"
## [3320] "Actinomyces_sp_oral_taxon_448 0.158605994"
## [3321] "Actinomyces_sp_oral_taxon_897 -0.758031884"
## [3322] "Actinomyces_viscosus -4.193571480"
## [3323] "Aeriscardovia_aeriphila 0.043675993"
## [3324] "Alloscardovia_omnicolens -0.330091800"
## [3325] "Bifidobacterium_dentium 1.007252916"
## [3326] "Bifidobacterium_longum -0.321608629"
## [3327] "Scardovia_wiggsiae 0.705807367"
## [3328] "Corynebacterium_atypicum -0.814361488"
## [3329] "Corynebacterium_durum 2.696927335"
## [3330] "Corynebacterium_matruchotii 1.892952171"
## [3331] "Rothia_aeria -0.796373056"
## [3332] "Rothia_dentocariosa -0.003663168"
## [3333] "Rothia_mucilaginosa -0.776306671"
## [3334] "Cutibacterium_acnes -0.766009998"
## [3335] "Propionibacterium_acidifaciens -0.791778645"
## [3336] "Pseudopropionibacterium_propionicum 0.979012725"
## [3337] "Atopobium_deltae 0.563753805"
## [3338] "Atopobium_parvulum 0.770874554"
## [3339] "Atopobium_rimae 1.895197165"
## [3340] "Olsenella_profusa 0.939921183"
## [3341] "Olsenella_scatoligenes 0.459217746"
## [3342] "Olsenella_uli 2.328234627"
## [3343] "Collinsella_aerofaciens 0.751768094"
## [3344] "Collinsella_intestinalis 0.833008467"
## [3345] "Collinsella_stercoris 2.375870899"
## [3346] "Enorma_massiliensis 3.035256330"
## [3347] "X.Collinsella._massiliensis 0.531567292"
## [3348] "Asaccharobacter_celatus -0.753467770"
## [3349] "Denitrobacterium_detoxificans -0.766009998"
## [3350] "Enterorhabdus_caecimuris -0.839830353"
## [3351] "Slackia_exigua -2.756133664"
## [3352] "Slackia_isoflavoniconvertens 1.267462366"
## [3353] "Rubrobacter_radiotolerans -0.403053192"
## [3354] "Thermoleophilum_album 1.397904684"
## [3355] "Porphyromonas_endodontalis -0.832470707"
## [3356] "Porphyromonas_somerae 0.949690863"
## [3357] "Prevotella_histicola -2.384183631"
## [3358] "Prevotella_melaninogenica -0.960731324"
## [3359] "Kouleothrix_aurantiaca 2.166444005"
## [3360] "Hydrogenibacillus_schlegelii -1.014497615"
## [3361] "Gemella_bergeri 0.334590132"
## [3362] "Gemella_haemolysans -0.154706294"
## [3363] "Gemella_morbillorum 0.766891905"
## [3364] "Gemella_sanguinis -0.405277750"
## [3365] "Brochothrix_campestris -1.256628569"
## [3366] "Staphylococcus_argenteus -0.063382246"
## [3367] "Staphylococcus_aureus -0.250207471"
## [3368] "Staphylococcus_epidermidis 0.218918701"
## [3369] "Staphylococcus_schweitzeri 1.573737224"
## [3370] "Abiotrophia_defectiva 2.188472091"
## [3371] "Abiotrophia_sp_HMSC24B09 2.252013283"
## [3372] "Granulicatella_adiacens -0.191677152"
## [3373] "Granulicatella_elegans -0.101910894"
## [3374] "Enterococcus_faecalis -1.146311214"
## [3375] "Lactobacillus_rhamnosus -1.273296171"
## [3376] "Streptococcus_anginosus -0.621968356"
## [3377] "Streptococcus_australis -0.905702586"
## [3378] "Streptococcus_cristatus 0.563147901"
## [3379] "Streptococcus_gordonii 0.675710416"
## [3380] "Streptococcus_infantis -0.820104915"
## [3381] "Streptococcus_milleri -0.251799330"
## [3382] "Streptococcus_mitis -0.437759081"
## [3383] "Streptococcus_oralis -0.927233091"
## [3384] "Streptococcus_parasanguinis 0.065030142"
## [3385] "Streptococcus_peroris 0.726672199"
## [3386] "Streptococcus_pneumoniae -3.487776178"
## [3387] "Streptococcus_pseudopneumoniae 2.058629838"
## [3388] "Streptococcus_salivarius -0.092822036"
## [3389] "Streptococcus_sanguinis -0.301089952"
## [3390] "Streptococcus_sp_A12 1.709624232"
## [3391] "Streptococcus_sp_F0442 1.238918330"
## [3392] "Streptococcus_sp_HMSC034E03 0.085445402"
## [3393] "Streptococcus_sp_HMSC067H01 1.789460887"
## [3394] "Streptococcus_sp_HMSC071D03 4.565467445"
## [3395] "Streptococcus_sp_HPH0090 -0.612090452"
## [3396] "Streptococcus_sp_M334 0.985349755"
## [3397] "Streptococcus_vestibularis -4.335458470"
## [3398] "Eubacterium_brachy -3.747187319"
## [3399] "Eubacterium_infirmum 3.691260452"
## [3400] "Eubacterium_nodatum -1.101259720"
## [3401] "Eubacterium_sulci -0.032145909"
## [3402] "Mogibacterium_diversum 1.096063551"
## [3403] "Mogibacterium_pumilum 1.732953812"
## [3404] "Mogibacterium_timidum 0.570932126"
## [3405] "Lachnoanaerobaculum_saburreum 0.874399602"
## [3406] "Oribacterium_parvum -0.284788812"
## [3407] "Oribacterium_sinus 0.566370068"
## [3408] "Oribacterium_sp_oral_taxon_078 -0.632787101"
## [3409] "Stomatobaculum_longum -1.163532557"
## [3410] "Peptostreptococcus_stomatis -0.955893638"
## [3411] "Bulleidia_extructa -2.119958773"
## [3412] "Solobacterium_moorei 1.804696276"
## [3413] "Limnochorda_pilosa 0.823625096"
## [3414] "Veillonella_atypica -0.615367690"
## [3415] "Veillonella_dispar -0.139956123"
## [3416] "Veillonella_infantium 0.460319344"
## [3417] "Veillonella_parvula -0.189608192"
## [3418] "Veillonella_sp_T11011_6 0.378864375"
## [3419] "Parvimonas_micra 0.518509990"
## [3420] "Parvimonas_sp_oral_taxon_110 -1.524202958"
## [3421] "Parvimonas_sp_oral_taxon_393 -2.973049298"
## [3422] "Fusobacterium_nucleatum 0.734551546"
## [3423] "Leptotrichia_wadei -1.861250856"
## [3424] "Gemmata_obscuriglobus -0.766009998"
## [3425] "Paludisphaera_borealis -0.756339243"
## [3426] "Achromobacter_xylosoxidans -0.173267260"
## [3427] "Cupriavidus_sp 0.174756500"
## [3428] "Sutterella_parvirubra 0.252473666"
## [3429] "Anaerobiospirillum_thomasii -1.981538446"
## [3430] "Cardiobacterium_hominis -0.216197415"
## [3431] "Cardiobacterium_valvarum 0.439268262"
## [3432] "Alkalilimnicola_ehrlichii 0.254726521"
## [3433] "Escherichia_coli 0.585832529"
## [3434] "Thiohalorhabdus_denitrificans 0.590558127"
## [3435] "Pseudomonas_aeruginosa -0.103828422"
## [3436] "Acholeplasma_oculi -1.603442433"
## [3437] "Candida_parapsilosis -0.328703404"
## [3438] "Nakamurella_silvestris -0.949778364"
## [3439] "Prevotella_jejuni 1.096045217"
## [3440] "Prevotella_pallens -1.430252141"
## [3441] "Prevotella_salivae -0.913167261"
## [3442] "Tannerella_sp_oral_taxon_HOT_286 0.395593733"
## [3443] "Capnocytophaga_gingivalis 2.329257573"
## [3444] "Lactobacillus_gasseri 0.176354104"
## [3445] "Sharpea_azabuensis -0.618940067"
## [3446] "Streptococcus_mutans 0.444449124"
## [3447] "Oribacterium_asaccharolyticum -3.940054000"
## [3448] "Megasphaera_micronuciformis -0.160296585"
## [3449] "Neisseria_flavescens 0.458557967"
## [3450] "Neisseria_subflava -1.035778165"
## [3451] "Stenotrophomonas_maltophilia -0.594362778"
## [3452] "Stenotrophomonas_pavanii 2.578787942"
## [3453] "Stenotrophomonas_rhizophila -5.837881546"
## [3454] "Streptococcus_sobrinus 2.827840695"
## [3455] "Eggerthia_catenaformis -1.271510660"
## [3456] "Haemophilus_parainfluenzae 0.498550173"
## [3457] ""
## [3458] "$fitted"
## [3459] " CFB_e_qiaamp CFB_e_molysis CFB_e_lyPMA"
## [3460] "Actinobaculum_sp_oral_taxon_183 2.15830625 2.024738143 -0.20064821"
## [3461] "Actinomyces_georgiae -2.49512337 -0.105731180 -2.82644482"
## [3462] "Actinomyces_graevenitzii 5.16396933 5.409172141 3.48561374"
## [3463] "Actinomyces_hongkongensis -2.73220583 -0.434711266 -2.83082458"
## [3464] "Actinomyces_johnsonii 3.73274660 2.949437718 -0.06796993"
## [3465] "Actinomyces_massiliensis 0.59105013 2.377196842 -2.27688247"
## [3466] "Actinomyces_meyeri -1.39300456 -0.236626232 -2.10804490"
## [3467] "Actinomyces_naeslundii 4.01894627 3.400550256 -2.26519320"
## [3468] "Actinomyces_odontolyticus 8.17726264 7.597816627 6.03844487"
## [3469] "Actinomyces_oris 6.66769400 6.620578409 3.98344369"
## [3470] "Actinomyces_sp_HMSC035G02 5.13694141 4.542363094 2.83671111"
## [3471] "Actinomyces_sp_HPA0247 5.00984436 4.268917349 2.08732981"
## [3472] "Actinomyces_sp_ICM47 5.08171466 4.703046798 2.18061829"
## [3473] "Actinomyces_sp_S6_Spd3 3.05174658 2.513591984 0.79817449"
## [3474] "Actinomyces_sp_oral_taxon_170 1.12846862 0.835565039 -3.30901536"
## [3475] "Actinomyces_sp_oral_taxon_180 3.61578992 2.753194820 -1.69473651"
## [3476] "Actinomyces_sp_oral_taxon_181 3.84560119 3.446982141 1.04346627"
## [3477] "Actinomyces_sp_oral_taxon_414 -4.57635315 -0.938381240 -2.48167398"
## [3478] "Actinomyces_sp_oral_taxon_448 -3.61129826 -4.184811078 -1.46970006"
## [3479] "Actinomyces_sp_oral_taxon_897 -0.96304721 -1.198316608 -1.42373872"
## [3480] "Actinomyces_viscosus 6.09609845 5.279416416 1.71003532"
## [3481] "Aeriscardovia_aeriphila 1.72670196 1.067526765 0.16386938"
## [3482] "Alloscardovia_omnicolens 1.78837008 1.154279390 -1.87881464"
## [3483] "Bifidobacterium_dentium -3.42376349 -1.885237604 -2.42559301"
## [3484] "Bifidobacterium_longum 1.65063975 2.628989297 0.90511596"
## [3485] "Scardovia_wiggsiae 1.99725966 1.130344776 -0.11434491"
## [3486] "Corynebacterium_atypicum -4.65066333 -4.434570362 -2.73853931"
## [3487] "Corynebacterium_durum 3.16449286 2.243583930 -0.92699447"
## [3488] "Corynebacterium_matruchotii -4.05996992 -0.173765164 -1.83633711"
## [3489] "Rothia_aeria -0.28493955 1.194781531 -1.67860209"
## [3490] "Rothia_dentocariosa 7.37626353 6.602064993 7.32853960"
## [3491] "Rothia_mucilaginosa 8.36079425 7.784058584 8.29068969"
## [3492] "Cutibacterium_acnes -1.30016577 -0.161198343 -2.75933851"
## [3493] "Propionibacterium_acidifaciens -0.66710919 -1.559244324 -2.00760596"
## [3494] "Pseudopropionibacterium_propionicum 2.69218205 2.244511928 -0.17143944"
## [3495] "Atopobium_deltae -4.09758845 -3.943071435 -2.16626151"
## [3496] "Atopobium_parvulum 4.25256688 3.683273057 2.99843065"
## [3497] "Atopobium_rimae 3.85241332 3.355140374 0.22920454"
## [3498] "Olsenella_profusa 1.01133717 1.460809143 -0.24543068"
## [3499] "Olsenella_scatoligenes 1.25295667 1.119332593 -1.54260230"
## [3500] "Olsenella_uli 0.63708023 0.281223067 -1.05130958"
## [3501] "Collinsella_aerofaciens 1.33047866 1.061654194 -0.32883578"
## [3502] "Collinsella_intestinalis -0.29391965 -0.291793071 -1.19067775"
## [3503] "Collinsella_stercoris 0.52783078 0.005963981 -2.01534585"
## [3504] "Enorma_massiliensis 0.21410300 -0.248784411 -2.09085413"
## [3505] "X.Collinsella._massiliensis 1.68340512 1.393751283 -1.50742221"
## [3506] "Asaccharobacter_celatus -3.90334965 -0.920635484 -2.71034049"
## [3507] "Denitrobacterium_detoxificans -1.53495663 -1.266488709 -2.75933851"
## [3508] "Enterorhabdus_caecimuris -3.63329575 -1.087989705 -2.50351999"
## [3509] "Slackia_exigua 2.49629302 2.122574358 -1.04965939"
## [3510] "Slackia_isoflavoniconvertens 0.50547305 0.692106264 -1.63238059"
## [3511] "Rubrobacter_radiotolerans -4.42327623 -3.238098721 -2.66535635"
## [3512] "Thermoleophilum_album -0.13647101 0.521343517 -0.23502696"
## [3513] "Porphyromonas_endodontalis 0.94191791 -3.027237116 3.77959726"
## [3514] "Porphyromonas_somerae 1.84601545 1.698889835 4.09150453"
## [3515] "Prevotella_histicola -0.29085104 -1.646444763 5.14704781"
## [3516] "Prevotella_melaninogenica 1.43933647 0.310836588 5.33408443"
## [3517] "Kouleothrix_aurantiaca -4.42021598 -1.304587999 -2.80157594"
## [3518] "Hydrogenibacillus_schlegelii -2.35871190 -2.081875612 -1.93420741"
## [3519] "Gemella_bergeri 2.73817363 2.102389884 -1.33077303"
## [3520] "Gemella_haemolysans 5.55972066 5.081523208 5.86616390"
## [3521] "Gemella_morbillorum 3.81892307 3.152767304 2.60422810"
## [3522] "Gemella_sanguinis 6.51397553 5.751914300 6.28447660"
## [3523] "Brochothrix_campestris -4.50547331 -2.674297932 -3.60472401"
## [3524] "Staphylococcus_argenteus -2.69005508 -4.530613935 -2.54654224"
## [3525] "Staphylococcus_aureus -1.26252595 -1.126429762 -1.12617887"
## [3526] "Staphylococcus_epidermidis -3.77096176 -4.404049840 -1.14498163"
## [3527] "Staphylococcus_schweitzeri -2.45071430 -4.419248989 -5.58585067"
## [3528] "Abiotrophia_defectiva 0.58085955 -0.453212133 -3.87660592"
## [3529] "Abiotrophia_sp_HMSC24B09 -0.58105765 -0.188982426 -3.75590916"
## [3530] "Granulicatella_adiacens 3.40470352 2.833344672 1.94207740"
## [3531] "Granulicatella_elegans 4.43122185 4.004663211 3.82522081"
## [3532] "Enterococcus_faecalis -3.13270397 -5.280151602 -1.94234437"
## [3533] "Lactobacillus_rhamnosus -1.30724936 -0.690946328 -1.58855110"
## [3534] "Streptococcus_anginosus 4.03442498 3.750711314 1.33615893"
## [3535] "Streptococcus_australis 6.02175986 4.869183341 4.04959863"
## [3536] "Streptococcus_cristatus -1.87955611 -1.079387141 -2.26419576"
## [3537] "Streptococcus_gordonii 7.21465632 6.951980070 7.18369235"
## [3538] "Streptococcus_infantis 5.99577391 5.672333375 6.59692241"
## [3539] "Streptococcus_milleri 0.97107768 -0.416529567 3.65057406"
## [3540] "Streptococcus_mitis 5.46224275 6.272794513 7.57780176"
## [3541] "Streptococcus_oralis 5.14527797 5.429065393 5.18365508"
## [3542] "Streptococcus_parasanguinis 7.42003828 6.929907789 7.70234647"
## [3543] "Streptococcus_peroris 0.64268946 1.656400491 1.08921636"
## [3544] "Streptococcus_pneumoniae -2.31725708 4.854861970 0.72465078"
## [3545] "Streptococcus_pseudopneumoniae 2.02219194 3.566230088 1.85251635"
## [3546] "Streptococcus_salivarius 5.33647023 4.713104061 3.89664425"
## [3547] "Streptococcus_sanguinis 4.47971495 5.376399340 5.85908173"
## [3548] "Streptococcus_sp_A12 1.15324593 0.269360961 -0.83430566"
## [3549] "Streptococcus_sp_F0442 5.49307523 4.907664107 4.81188517"
## [3550] "Streptococcus_sp_HMSC034E03 -4.05391922 -0.440650134 -1.40425898"
## [3551] "Streptococcus_sp_HMSC067H01 -3.83444078 -0.217827960 -1.97536529"
## [3552] "Streptococcus_sp_HMSC071D03 -3.25658884 -0.290459925 -1.71354052"
## [3553] "Streptococcus_sp_HPH0090 1.16808635 1.875372583 0.39438445"
## [3554] "Streptococcus_sp_M334 1.90324436 2.919481394 4.23928415"
## [3555] "Streptococcus_vestibularis 1.02060775 0.366782511 0.11379414"
## [3556] "Eubacterium_brachy 4.34310959 4.028048232 3.14308825"
## [3557] "Eubacterium_infirmum -0.04633390 0.540285952 -2.75933851"
## [3558] "Eubacterium_nodatum 0.86276741 -0.889608048 0.37934959"
## [3559] "Eubacterium_sulci 1.33525726 0.544665152 -1.05002935"
## [3560] "Mogibacterium_diversum 3.36774648 3.075322560 -2.01472221"
## [3561] "Mogibacterium_pumilum 0.08040293 -0.141752203 -3.05383172"
## [3562] "Mogibacterium_timidum -1.33990590 -0.936935472 -2.06505755"
## [3563] "Lachnoanaerobaculum_saburreum 1.85155042 3.309188821 2.61477550"
## [3564] "Oribacterium_parvum -4.35802339 -5.453367219 -1.45235940"
## [3565] "Oribacterium_sinus 0.09317376 -1.898181699 0.24248732"
## [3566] "Oribacterium_sp_oral_taxon_078 -2.89889244 -0.444862887 -2.36938004"
## [3567] "Stomatobaculum_longum -5.74594543 -2.775904523 0.28190031"
## [3568] "Peptostreptococcus_stomatis 2.13514341 -0.066177079 -1.11189621"
## [3569] "Bulleidia_extructa 3.17734591 2.741299492 2.36114076"
## [3570] "Solobacterium_moorei 3.20383689 2.959560622 1.41197193"
## [3571] "Limnochorda_pilosa 2.17867757 1.782238241 -1.23300405"
## [3572] "Veillonella_atypica -5.54305621 -0.613974630 -0.14284109"
## [3573] "Veillonella_dispar -1.11600642 1.776400298 3.25014764"
## [3574] "Veillonella_infantium -4.46812030 0.241244788 1.24301494"
## [3575] "Veillonella_parvula 0.44128706 4.082880988 3.40235669"
## [3576] "Veillonella_sp_T11011_6 -4.88414867 -1.682458510 -0.90194958"
## [3577] "Parvimonas_micra 4.97513824 4.404128565 3.45034095"
## [3578] "Parvimonas_sp_oral_taxon_110 -1.55925071 -2.515500298 -1.31110335"
## [3579] "Parvimonas_sp_oral_taxon_393 0.05133545 0.097493893 -0.95597902"
## [3580] "Fusobacterium_nucleatum -3.20391657 0.736168409 -1.83830447"
## [3581] "Leptotrichia_wadei -6.10339640 -4.622318974 -0.49723886"
## [3582] "Gemmata_obscuriglobus -3.05054523 -0.089634352 -2.75933851"
## [3583] "Paludisphaera_borealis -1.56086594 0.035880409 -1.49588620"
## [3584] "Achromobacter_xylosoxidans 4.04027326 1.916944566 7.34426649"
## [3585] "Cupriavidus_sp 4.70023875 4.515125076 2.46658273"
## [3586] "Sutterella_parvirubra -4.54743811 -0.954561969 0.35773876"
## [3587] "Anaerobiospirillum_thomasii -4.14334947 -0.078889764 -2.75933851"
## [3588] "Cardiobacterium_hominis -4.01608244 -3.830722653 -1.22416947"
## [3589] "Cardiobacterium_valvarum -4.01289466 -4.705859868 -1.21362409"
## [3590] "Alkalilimnicola_ehrlichii 0.43970490 -5.555903806 1.23856624"
## [3591] "Escherichia_coli -5.83359016 -8.447014790 -3.05076559"
## [3592] "Thiohalorhabdus_denitrificans 1.29373170 -2.188907197 2.79603864"
## [3593] "Pseudomonas_aeruginosa 6.53993727 2.237187609 9.81756357"
## [3594] "Acholeplasma_oculi -1.10268597 -1.636361139 -3.02911359"
## [3595] "Candida_parapsilosis -4.55079878 -4.691269858 -1.82528409"
## [3596] "Nakamurella_silvestris -4.40597467 -4.664508740 -2.76575684"
## [3597] "Prevotella_jejuni -5.37671397 -5.941117462 -1.49535472"
## [3598] "Prevotella_pallens -4.79901819 -6.183064266 -1.59017238"
## [3599] "Prevotella_salivae -4.26039619 -6.157753539 -1.72041871"
## [3600] "Tannerella_sp_oral_taxon_HOT_286 -5.49357192 -7.515399585 -1.13134803"
## [3601] "Capnocytophaga_gingivalis -1.17725026 -7.836822061 -2.40585922"
## [3602] "Lactobacillus_gasseri -5.83214796 -5.815127991 -3.14560481"
## [3603] "Sharpea_azabuensis -4.92507887 -4.111530487 -2.94081341"
## [3604] "Streptococcus_mutans -4.47817717 -3.797008981 -3.95978049"
## [3605] "Oribacterium_asaccharolyticum -3.82364652 -6.302959768 -3.75930807"
## [3606] "Megasphaera_micronuciformis -5.55055989 -6.506569371 -3.40604702"
## [3607] "Neisseria_flavescens -7.76957583 -6.833607473 -1.35801900"
## [3608] "Neisseria_subflava -7.19649004 -6.570731971 -2.92099108"
## [3609] "Stenotrophomonas_maltophilia -5.65587505 -8.068767851 -3.55154595"
## [3610] "Stenotrophomonas_pavanii -4.83274214 -8.566127999 -4.96478218"
## [3611] "Stenotrophomonas_rhizophila -4.71278575 -8.727791672 -4.06252770"
## [3612] "Streptococcus_sobrinus -3.84069928 -5.690808235 -4.50866150"
## [3613] "Eggerthia_catenaformis -4.11532305 -9.803073158 -3.33088634"
## [3614] "Haemophilus_parainfluenzae -5.53955006 -7.213282054 -3.56513881"
## [3615] " CFB_e_host_zero CFB_e_control"
## [3616] "Actinobaculum_sp_oral_taxon_183 1.506917365 1.83546037"
## [3617] "Actinomyces_georgiae -2.130121487 -0.79033624"
## [3618] "Actinomyces_graevenitzii 4.919982054 2.01174618"
## [3619] "Actinomyces_hongkongensis -2.394746884 -0.79471600"
## [3620] "Actinomyces_johnsonii 3.102615257 0.54004804"
## [3621] "Actinomyces_massiliensis 1.229737632 -0.24077389"
## [3622] "Actinomyces_meyeri -0.079953194 -0.92163537"
## [3623] "Actinomyces_naeslundii 3.684901476 -0.22908462"
## [3624] "Actinomyces_odontolyticus 7.638032146 4.23739952"
## [3625] "Actinomyces_oris 6.193043102 0.34619158"
## [3626] "Actinomyces_sp_HMSC035G02 4.726434000 0.24963833"
## [3627] "Actinomyces_sp_HPA0247 4.462035472 1.16005265"
## [3628] "Actinomyces_sp_ICM47 4.616763684 0.75351852"
## [3629] "Actinomyces_sp_S6_Spd3 2.494531435 -2.20085867"
## [3630] "Actinomyces_sp_oral_taxon_170 0.890518649 -1.27290678"
## [3631] "Actinomyces_sp_oral_taxon_180 2.709986128 -0.72322993"
## [3632] "Actinomyces_sp_oral_taxon_181 3.511476902 -2.02589717"
## [3633] "Actinomyces_sp_oral_taxon_414 -2.013434064 -0.44556540"
## [3634] "Actinomyces_sp_oral_taxon_448 -3.283698736 -0.65896532"
## [3635] "Actinomyces_sp_oral_taxon_897 -1.661448230 0.61236986"
## [3636] "Actinomyces_viscosus 3.368166778 3.01541790"
## [3637] "Aeriscardovia_aeriphila 1.158952412 -0.48555824"
## [3638] "Alloscardovia_omnicolens 1.347133984 0.15729394"
## [3639] "Bifidobacterium_dentium -3.014646476 -1.31447899"
## [3640] "Bifidobacterium_longum 0.966651509 2.94122454"
## [3641] "Scardovia_wiggsiae 1.041921305 -2.24774579"
## [3642] "Corynebacterium_atypicum -3.838411354 -0.70243073"
## [3643] "Corynebacterium_durum 2.746264001 -0.22554549"
## [3644] "Corynebacterium_matruchotii -1.753819500 -0.76748492"
## [3645] "Rothia_aeria 1.145906279 -1.34997109"
## [3646] "Rothia_dentocariosa 6.725592972 2.41068563"
## [3647] "Rothia_mucilaginosa 7.809049707 5.61287346"
## [3648] "Cutibacterium_acnes -0.885501502 -0.72322993"
## [3649] "Propionibacterium_acidifaciens -0.651170259 0.02850262"
## [3650] "Pseudopropionibacterium_propionicum 2.304161787 -1.12338623"
## [3651] "Atopobium_deltae -5.232179253 -0.13015293"
## [3652] "Atopobium_parvulum 4.027254542 0.30851056"
## [3653] "Atopobium_rimae 3.518510720 -0.86907709"
## [3654] "Olsenella_profusa 0.695542279 0.24908560"
## [3655] "Olsenella_scatoligenes 1.037572867 -1.00671015"
## [3656] "Olsenella_uli 0.274413971 -0.79095621"
## [3657] "Collinsella_aerofaciens 0.863094382 -0.72322993"
## [3658] "Collinsella_intestinalis -0.418766521 -1.09430416"
## [3659] "Collinsella_stercoris -0.081032168 -1.11999377"
## [3660] "Enorma_massiliensis -0.378010256 -0.88337249"
## [3661] "X.Collinsella._massiliensis 1.365867342 -0.72322993"
## [3662] "Asaccharobacter_celatus -2.050253649 -0.67423191"
## [3663] "Denitrobacterium_detoxificans -2.177334707 -0.72322993"
## [3664] "Enterorhabdus_caecimuris -2.904025052 -0.46741141"
## [3665] "Slackia_exigua 2.478953125 -0.52691651"
## [3666] "Slackia_isoflavoniconvertens 0.980434856 -0.72322993"
## [3667] "Rubrobacter_radiotolerans -4.512093869 -0.62924777"
## [3668] "Thermoleophilum_album -0.517590954 -0.15441252"
## [3669] "Porphyromonas_endodontalis 4.826736848 2.71568630"
## [3670] "Porphyromonas_somerae 3.462141142 1.52876809"
## [3671] "Prevotella_histicola 2.357325637 4.67272383"
## [3672] "Prevotella_melaninogenica 3.282140738 6.60914832"
## [3673] "Kouleothrix_aurantiaca -2.976646078 -0.76546736"
## [3674] "Hydrogenibacillus_schlegelii -2.319225503 0.10190117"
## [3675] "Gemella_bergeri 1.983969191 -0.72322993"
## [3676] "Gemella_haemolysans 4.961504468 -0.46151417"
## [3677] "Gemella_morbillorum 3.215764611 -0.72322993"
## [3678] "Gemella_sanguinis 5.906501033 4.37989568"
## [3679] "Brochothrix_campestris -5.468109391 -1.56861543"
## [3680] "Staphylococcus_argenteus -2.898930983 -5.98401999"
## [3681] "Staphylococcus_aureus -1.088636720 -3.87242991"
## [3682] "Staphylococcus_epidermidis -3.662659313 -0.70840568"
## [3683] "Staphylococcus_schweitzeri -4.077536404 -4.95889741"
## [3684] "Abiotrophia_defectiva -0.073732340 -1.84049734"
## [3685] "Abiotrophia_sp_HMSC24B09 -0.002896663 -1.71980058"
## [3686] "Granulicatella_adiacens 2.778236795 0.13396207"
## [3687] "Granulicatella_elegans 3.993471715 -0.56750869"
## [3688] "Enterococcus_faecalis -2.905588535 0.09376421"
## [3689] "Lactobacillus_rhamnosus -0.645562086 0.44755748"
## [3690] "Streptococcus_anginosus 3.796798041 -0.72322993"
## [3691] "Streptococcus_australis 4.900484192 -0.22878803"
## [3692] "Streptococcus_cristatus -1.448866161 -2.19753410"
## [3693] "Streptococcus_gordonii 6.723993579 3.54031740"
## [3694] "Streptococcus_infantis 5.648212460 0.22032098"
## [3695] "Streptococcus_milleri 1.463148566 2.57195633"
## [3696] "Streptococcus_mitis 5.507396045 5.09938723"
## [3697] "Streptococcus_oralis 4.813564173 1.73925261"
## [3698] "Streptococcus_parasanguinis 6.855872039 6.41329209"
## [3699] "Streptococcus_peroris 1.927970969 -1.37722913"
## [3700] "Streptococcus_pneumoniae 0.787761844 0.79911089"
## [3701] "Streptococcus_pseudopneumoniae 3.089121229 0.61431191"
## [3702] "Streptococcus_salivarius 4.644727925 2.58068215"
## [3703] "Streptococcus_sanguinis 3.999627113 1.74187082"
## [3704] "Streptococcus_sp_A12 0.749822364 -2.24697221"
## [3705] "Streptococcus_sp_F0442 5.139883707 0.09054787"
## [3706] "Streptococcus_sp_HMSC034E03 -3.751635876 -2.64181958"
## [3707] "Streptococcus_sp_HMSC067H01 -3.086135762 -1.83982886"
## [3708] "Streptococcus_sp_HMSC071D03 -2.146718583 -1.25532377"
## [3709] "Streptococcus_sp_HPH0090 1.048154458 -0.57191652"
## [3710] "Streptococcus_sp_M334 1.262899195 2.24650227"
## [3711] "Streptococcus_vestibularis -0.676005261 -1.07653029"
## [3712] "Eubacterium_brachy 3.310837035 1.67899539"
## [3713] "Eubacterium_infirmum -0.803955836 -0.72322993"
## [3714] "Eubacterium_nodatum 0.258371063 2.41545817"
## [3715] "Eubacterium_sulci 1.114561734 0.68729831"
## [3716] "Mogibacterium_diversum 3.084685295 -0.04287772"
## [3717] "Mogibacterium_pumilum -0.506733721 -1.01772314"
## [3718] "Mogibacterium_timidum -1.756533724 -0.02894897"
## [3719] "Lachnoanaerobaculum_saburreum 0.423026359 0.40068137"
## [3720] "Oribacterium_parvum -4.354124691 -0.78371739"
## [3721] "Oribacterium_sinus -0.654660894 -2.41913558"
## [3722] "Oribacterium_sp_oral_taxon_078 -1.011138373 -0.33327146"
## [3723] "Stomatobaculum_longum -6.770184375 -1.02241434"
## [3724] "Peptostreptococcus_stomatis 1.223530803 -0.23193634"
## [3725] "Bulleidia_extructa 2.972472044 1.62578069"
## [3726] "Solobacterium_moorei 2.661231457 -0.69844310"
## [3727] "Limnochorda_pilosa 1.599253940 -0.24418387"
## [3728] "Veillonella_atypica -4.600386380 1.73380255"
## [3729] "Veillonella_dispar -0.419456257 3.18900446"
## [3730] "Veillonella_infantium -4.112044663 0.18927793"
## [3731] "Veillonella_parvula 1.900705726 3.13309565"
## [3732] "Veillonella_sp_T11011_6 -4.766890474 -0.12390911"
## [3733] "Parvimonas_micra 3.212568956 0.46887596"
## [3734] "Parvimonas_sp_oral_taxon_110 -0.913539007 -0.41306666"
## [3735] "Parvimonas_sp_oral_taxon_393 -0.350981330 -0.24281556"
## [3736] "Fusobacterium_nucleatum -3.233645564 -0.72322993"
## [3737] "Leptotrichia_wadei -7.439318335 -1.16399840"
## [3738] "Gemmata_obscuriglobus -2.872584803 -0.72322993"
## [3739] "Paludisphaera_borealis -0.910841790 -0.63755321"
## [3740] "Achromobacter_xylosoxidans 2.972957437 9.01239755"
## [3741] "Cupriavidus_sp 4.552258603 -0.72322993"
## [3742] "Sutterella_parvirubra -1.698366887 -0.72322993"
## [3743] "Anaerobiospirillum_thomasii -1.245481714 -0.72322993"
## [3744] "Cardiobacterium_hominis -3.574537509 -0.78819785"
## [3745] "Cardiobacterium_valvarum -3.555779102 -0.55665205"
## [3746] "Alkalilimnicola_ehrlichii -0.962425395 3.01840899"
## [3747] "Escherichia_coli -7.014433218 -1.16851601"
## [3748] "Thiohalorhabdus_denitrificans 0.541565667 3.33861411"
## [3749] "Pseudomonas_aeruginosa 5.260986197 11.00143429"
## [3750] "Acholeplasma_oculi -2.582118467 -0.99300501"
## [3751] "Candida_parapsilosis -5.775700208 -1.73989441"
## [3752] "Nakamurella_silvestris -3.676929009 -0.72964826"
## [3753] "Prevotella_jejuni -1.901218909 -0.43731597"
## [3754] "Prevotella_pallens -3.531421143 0.37672102"
## [3755] "Prevotella_salivae -1.942038777 0.23476234"
## [3756] "Tannerella_sp_oral_taxon_HOT_286 -3.379301355 -2.01072615"
## [3757] "Capnocytophaga_gingivalis -0.976114797 -2.08420052"
## [3758] "Lactobacillus_gasseri -7.128343004 -2.57373394"
## [3759] "Sharpea_azabuensis -3.982591021 -0.90470483"
## [3760] "Streptococcus_mutans -5.331577656 -5.25073254"
## [3761] "Oribacterium_asaccharolyticum -4.169749664 -1.72319949"
## [3762] "Megasphaera_micronuciformis -5.899586274 -1.22040041"
## [3763] "Neisseria_flavescens -5.884409870 -4.33627382"
## [3764] "Neisseria_subflava -6.951117207 -2.29694365"
## [3765] "Stenotrophomonas_maltophilia -5.324221773 -3.49273316"
## [3766] "Stenotrophomonas_pavanii -4.306204671 -1.54335820"
## [3767] "Stenotrophomonas_rhizophila -5.967352998 -1.98427743"
## [3768] "Streptococcus_sobrinus -5.154529283 -2.47255292"
## [3769] "Eggerthia_catenaformis -4.958657689 -2.57615376"
## [3770] "Haemophilus_parainfluenzae -6.497011849 -0.44939769"
## [3771] " CFB_e_benzonase CFB_d_qiaamp CFB_d_molysis"
## [3772] "Actinobaculum_sp_oral_taxon_183 1.43571443 -1.9538395 -2.08740763"
## [3773] "Actinomyces_georgiae -4.39796344 -2.3629306 0.02646155"
## [3774] "Actinomyces_graevenitzii 4.17293125 2.8719129 3.11711567"
## [3775] "Actinomyces_hongkongensis -4.40234320 -2.5941630 -0.29666846"
## [3776] "Actinomyces_johnsonii 2.04823348 3.9042563 3.12094743"
## [3777] "Actinomyces_massiliensis 0.22907791 -0.6182671 1.16787961"
## [3778] "Actinomyces_meyeri -1.99492925 -1.2261163 -0.06973798"
## [3779] "Actinomyces_naeslundii -0.59648580 4.1292198 3.51082376"
## [3780] "Actinomyces_odontolyticus 6.15151112 4.3979257 3.81847971"
## [3781] "Actinomyces_oris 5.92900955 6.6676940 6.62057841"
## [3782] "Actinomyces_sp_HMSC035G02 3.12679507 4.3544997 3.75992139"
## [3783] "Actinomyces_sp_HPA0247 3.18297860 3.3924473 2.65152027"
## [3784] "Actinomyces_sp_ICM47 3.33492972 4.5992527 4.22058481"
## [3785] "Actinomyces_sp_S6_Spd3 1.53529496 3.0615696 2.52341496"
## [3786] "Actinomyces_sp_oral_taxon_170 -3.66454733 3.4159725 3.12306893"
## [3787] "Actinomyces_sp_oral_taxon_180 1.56354086 3.6157899 2.75319482"
## [3788] "Actinomyces_sp_oral_taxon_181 2.20708550 3.9547236 3.55610457"
## [3789] "Actinomyces_sp_oral_taxon_414 -4.05319259 -4.1185464 -0.48057448"
## [3790] "Actinomyces_sp_oral_taxon_448 -2.54861533 -3.9296564 -4.50316922"
## [3791] "Actinomyces_sp_oral_taxon_897 -1.23808827 -2.7937594 -3.02902882"
## [3792] "Actinomyces_viscosus 3.39139125 2.4694887 1.65280669"
## [3793] "Aeriscardovia_aeriphila 0.64591904 1.4086501 0.74947491"
## [3794] "Alloscardovia_omnicolens 0.92141569 1.9874039 1.35331323"
## [3795] "Bifidobacterium_dentium -3.53955762 -2.5505901 -1.01206418"
## [3796] "Bifidobacterium_longum 2.20354722 -2.1477931 -1.16944350"
## [3797] "Scardovia_wiggsiae -0.52939293 3.2384342 2.37151936"
## [3798] "Corynebacterium_atypicum -4.31005793 -4.6397615 -4.42366856"
## [3799] "Corynebacterium_durum -0.83940029 3.2948713 2.37396238"
## [3800] "Corynebacterium_matruchotii -4.37511211 -3.5551950 0.33100979"
## [3801] "Rothia_aeria -3.17099736 1.3472444 2.82696549"
## [3802] "Rothia_dentocariosa 6.81610400 6.4053572 5.63115863"
## [3803] "Rothia_mucilaginosa 7.47640924 7.6601953 7.08345968"
## [3804] "Cutibacterium_acnes -4.33085712 -1.3001658 -0.16119834"
## [3805] "Propionibacterium_acidifaciens -2.64085500 -0.6000155 -1.49215060"
## [3806] "Pseudopropionibacterium_propionicum 1.02763336 3.1928807 2.74521054"
## [3807] "Atopobium_deltae -3.73778012 -3.3770171 -3.22250006"
## [3808] "Atopobium_parvulum 2.96569128 3.2111801 2.64188631"
## [3809] "Atopobium_rimae 2.32682943 3.9455478 3.44827490"
## [3810] "Olsenella_profusa -1.06851891 1.7487981 2.19827009"
## [3811] "Olsenella_scatoligenes -0.31618616 1.9144931 1.78086901"
## [3812] "Olsenella_uli -2.93821894 2.8254873 2.46963018"
## [3813] "Collinsella_aerofaciens -0.13820819 1.3304787 1.06165419"
## [3814] "Collinsella_intestinalis -1.71407618 0.2610752 0.26320182"
## [3815] "Collinsella_stercoris -2.46916520 1.3567555 0.83488873"
## [3816] "Enorma_massiliensis -3.53019548 0.7284869 0.26559953"
## [3817] "X.Collinsella._massiliensis 0.58216567 1.6834051 1.39375128"
## [3818] "Asaccharobacter_celatus -4.28185911 -3.8737655 -0.89105134"
## [3819] "Denitrobacterium_detoxificans -4.33085712 -1.5349566 -1.26648871"
## [3820] "Enterorhabdus_caecimuris -4.07503860 -3.5035028 -0.95819681"
## [3821] "Slackia_exigua -0.30957997 2.9144206 2.54070195"
## [3822] "Slackia_isoflavoniconvertens -1.32737688 0.5054731 0.69210626"
## [3823] "Rubrobacter_radiotolerans -4.23687496 -4.1451004 -2.95992289"
## [3824] "Thermoleophilum_album -0.50987702 -1.1622811 -0.50446662"
## [3825] "Porphyromonas_endodontalis 2.15866192 -2.6959990 -6.66515401"
## [3826] "Porphyromonas_somerae 3.01555474 0.8621959 0.71507032"
## [3827] "Prevotella_histicola 4.00281157 -5.3743612 -6.72995491"
## [3828] "Prevotella_melaninogenica 6.05264020 -4.0649906 -5.19349049"
## [3829] "Kouleothrix_aurantiaca -2.07913690 -4.2445297 -1.12890171"
## [3830] "Hydrogenibacillus_schlegelii -3.50572603 -2.7189228 -2.44208655"
## [3831] "Gemella_bergeri 1.34732765 2.7381736 2.10238988"
## [3832] "Gemella_haemolysans 5.78797741 6.5847279 6.10653042"
## [3833] "Gemella_morbillorum 2.38764404 3.8189231 3.15276730"
## [3834] "Gemella_sanguinis 6.32333990 7.1896843 6.42762309"
## [3835] "Brochothrix_campestris -5.17624262 -2.8614370 -1.03026161"
## [3836] "Staphylococcus_argenteus -3.39048630 9.3994501 7.55889121"
## [3837] "Staphylococcus_aureus -1.85583327 12.1962055 12.33230172"
## [3838] "Staphylococcus_epidermidis -2.66590886 -3.9971394 -4.63022752"
## [3839] "Staphylococcus_schweitzeri -4.53739558 5.2936340 3.32509931"
## [3840] "Abiotrophia_defectiva -2.85577202 2.7685594 1.73448772"
## [3841] "Abiotrophia_sp_HMSC24B09 -2.71510690 1.5917767 1.98385187"
## [3842] "Granulicatella_adiacens 2.14288940 2.2006580 1.62929911"
## [3843] "Granulicatella_elegans 4.10665472 3.8545092 3.42795056"
## [3844] "Enterococcus_faecalis -3.51386298 -3.6200023 -5.76744998"
## [3845] "Lactobacillus_rhamnosus -3.16006971 -1.9582889 -1.34198582"
## [3846] "Streptococcus_anginosus 3.78326460 4.0344250 3.75071131"
## [3847] "Streptococcus_australis 4.94546974 6.1273442 4.97476767"
## [3848] "Streptococcus_cristatus -2.45664132 1.1402477 1.94041669"
## [3849] "Streptococcus_gordonii 6.34053119 2.2623994 1.99972319"
## [3850] "Streptococcus_infantis 6.26894700 6.0015245 5.67808391"
## [3851] "Streptococcus_milleri 2.19509624 -3.6323893 -5.01999654"
## [3852] "Streptococcus_mitis 6.40589349 4.5873827 5.39793443"
## [3853] "Streptococcus_oralis 5.75492985 5.1452780 5.42906539"
## [3854] "Streptococcus_parasanguinis 7.20971036 7.2445458 6.75441529"
## [3855] "Streptococcus_peroris 1.70928321 1.9248003 2.93851129"
## [3856] "Streptococcus_pneumoniae 0.80958918 -4.1351490 3.03697001"
## [3857] "Streptococcus_pseudopneumoniae 1.87673254 0.1967022 1.74074033"
## [3858] "Streptococcus_salivarius 4.66071616 5.0231788 4.39981259"
## [3859] "Streptococcus_sanguinis 5.01404467 -1.0468136 -0.15012922"
## [3860] "Streptococcus_sp_A12 -1.01969853 2.3808041 1.49691914"
## [3861] "Streptococcus_sp_F0442 4.25752061 3.4077122 2.82230108"
## [3862] "Streptococcus_sp_HMSC034E03 -1.78973748 -3.0361399 0.57712922"
## [3863] "Streptococcus_sp_HMSC067H01 -2.45508372 -3.0899839 0.52662892"
## [3864] "Streptococcus_sp_HMSC071D03 -3.46805518 -2.2325308 0.73359809"
## [3865] "Streptococcus_sp_HPH0090 1.46326365 -0.2167507 0.49053550"
## [3866] "Streptococcus_sp_M334 1.42533796 0.3329704 1.34920748"
## [3867] "Streptococcus_vestibularis -2.31984974 1.2357784 0.58195318"
## [3868] "Eubacterium_brachy 2.91497886 -0.3177438 -0.63280520"
## [3869] "Eubacterium_infirmum -2.15086954 -0.0463339 0.54028595"
## [3870] "Eubacterium_nodatum 2.00495515 -2.8565084 -4.60888385"
## [3871] "Eubacterium_sulci 1.52144087 -2.0856204 -2.87621247"
## [3872] "Mogibacterium_diversum 2.63177432 2.5615174 2.26909350"
## [3873] "Mogibacterium_pumilum -0.96392929 -0.3493043 -0.57145944"
## [3874] "Mogibacterium_timidum -1.94946632 -1.7277718 -1.32480138"
## [3875] "Lachnoanaerobaculum_saburreum 3.44691042 -0.9707146 0.48692376"
## [3876] "Oribacterium_parvum -2.56502022 -4.1779428 -5.27328666"
## [3877] "Oribacterium_sinus -0.24978240 -1.7013300 -3.69268546"
## [3878] "Oribacterium_sp_oral_taxon_078 -3.94089865 -3.2099207 -0.75589114"
## [3879] "Stomatobaculum_longum 0.73355577 -4.9432471 -1.97320621"
## [3880] "Peptostreptococcus_stomatis -1.25037339 3.0834751 0.88215464"
## [3881] "Bulleidia_extructa 2.32808093 0.9462212 0.51017483"
## [3882] "Solobacterium_moorei 2.93149103 3.1207151 2.87643884"
## [3883] "Limnochorda_pilosa 1.23004817 1.7499496 1.35351032"
## [3884] "Veillonella_atypica 1.42134118 -5.7270220 -0.79794040"
## [3885] "Veillonella_dispar 2.76568651 -3.9936854 -1.10127864"
## [3886] "Veillonella_infantium -0.10111827 -4.8068496 -0.09748453"
## [3887] "Veillonella_parvula 5.21740539 -3.7827819 -0.14118792"
## [3888] "Veillonella_sp_T11011_6 -0.42473981 -5.3542533 -2.15256309"
## [3889] "Parvimonas_micra 4.14965758 1.4792334 0.90822371"
## [3890] "Parvimonas_sp_oral_taxon_110 -1.84720887 -2.7378648 -3.69411438"
## [3891] "Parvimonas_sp_oral_taxon_393 -0.24425999 -1.4503621 -1.40420361"
## [3892] "Fusobacterium_nucleatum 0.12182467 -3.2039166 0.73616841"
## [3893] "Leptotrichia_wadei -3.00009410 -5.4178117 -3.93673425"
## [3894] "Gemmata_obscuriglobus -4.33085712 -3.0505452 -0.08963435"
## [3895] "Paludisphaera_borealis -4.24518041 -1.6589936 -0.06224728"
## [3896] "Achromobacter_xylosoxidans 5.84881857 -4.1175468 -6.24087549"
## [3897] "Cupriavidus_sp 2.43228659 4.7002387 4.51512508"
## [3898] "Sutterella_parvirubra 0.34775270 -4.5474381 -0.95456197"
## [3899] "Anaerobiospirillum_thomasii -3.11532867 -4.1433495 -0.07888976"
## [3900] "Cardiobacterium_hominis -2.87846434 -4.2372562 -4.05189644"
## [3901] "Cardiobacterium_valvarum -3.02824472 -4.1421812 -4.83514640"
## [3902] "Alkalilimnicola_ehrlichii 2.90813877 -1.8310172 -7.82662586"
## [3903] "Escherichia_coli -4.48487882 -3.8013788 -6.41480346"
## [3904] "Thiohalorhabdus_denitrificans 3.47817577 -1.9704522 -5.45309114"
## [3905] "Pseudomonas_aeruginosa 8.56897616 5.8878151 1.58506541"
## [3906] "Acholeplasma_oculi -3.61810123 0.2154682 -0.31820695"
## [3907] "Candida_parapsilosis -2.97263665 -3.9005991 -4.04107021"
## [3908] "Nakamurella_silvestris -4.33727545 -4.3262013 -4.58473534"
## [3909] "Prevotella_jejuni -0.38152423 -5.7324661 -6.29686955"
## [3910] "Prevotella_pallens 1.04761109 -5.2564594 -6.64050547"
## [3911] "Prevotella_salivae 0.04515786 -4.8567941 -6.75415142"
## [3912] "Tannerella_sp_oral_taxon_HOT_286 -2.80977950 -4.6553143 -6.67714193"
## [3913] "Capnocytophaga_gingivalis -4.26580801 0.1570065 -6.50256529"
## [3914] "Lactobacillus_gasseri -4.72563534 -3.3228116 -3.30579166"
## [3915] "Sharpea_azabuensis -4.51233203 -4.5084096 -3.69486123"
## [3916] "Streptococcus_mutans -4.44883695 -1.2822498 -0.60108158"
## [3917] "Oribacterium_asaccharolyticum -2.74542856 -2.9866727 -5.46598597"
## [3918] "Megasphaera_micronuciformis -2.47873663 -4.3180452 -5.27405472"
## [3919] "Neisseria_flavescens -1.45117280 -0.2181649 0.71780350"
## [3920] "Neisseria_subflava -1.13427009 -1.3564819 -0.73072387"
## [3921] "Stenotrophomonas_maltophilia -2.72716282 7.0569238 4.64403098"
## [3922] "Stenotrophomonas_pavanii -3.57548080 1.3239452 -2.40944068"
## [3923] "Stenotrophomonas_rhizophila -2.27677027 3.1191549 -0.89585099"
## [3924] "Streptococcus_sobrinus -4.54731078 -2.3476925 -4.19780141"
## [3925] "Eggerthia_catenaformis -3.32421287 -2.3803367 -8.06808679"
## [3926] "Haemophilus_parainfluenzae -1.42880445 -4.5736111 -6.24734312"
## [3927] " CFB_d_lyPMA CFB_d_host_zero CFB_d_control"
## [3928] "Actinobaculum_sp_oral_taxon_183 -4.31279399 -2.60522841 -2.27668541"
## [3929] "Actinomyces_georgiae -2.69425209 -1.99792876 -0.65814351"
## [3930] "Actinomyces_graevenitzii 1.19355727 2.62792559 -0.28031029"
## [3931] "Actinomyces_hongkongensis -2.69278178 -2.25670408 -0.65667320"
## [3932] "Actinomyces_johnsonii 0.10353979 3.27412497 0.71155776"
## [3933] "Actinomyces_massiliensis -3.48619971 0.02042040 -1.45009113"
## [3934] "Actinomyces_meyeri -1.94115665 0.08693505 -0.75474712"
## [3935] "Actinomyces_naeslundii -2.15491969 3.79517498 -0.11881111"
## [3936] "Actinomyces_odontolyticus 2.25910796 3.85869523 0.45806261"
## [3937] "Actinomyces_oris 3.98344369 6.19304310 0.34619158"
## [3938] "Actinomyces_sp_HMSC035G02 2.05426941 3.94399230 -0.53280337"
## [3939] "Actinomyces_sp_HPA0247 0.46993273 2.84463839 -0.45734443"
## [3940] "Actinomyces_sp_ICM47 1.69815630 4.13430169 0.27105653"
## [3941] "Actinomyces_sp_S6_Spd3 0.80799747 2.50435441 -2.19103569"
## [3942] "Actinomyces_sp_oral_taxon_170 -1.02151146 3.17802254 1.01459711"
## [3943] "Actinomyces_sp_oral_taxon_180 -1.69473651 2.70998613 -0.72322993"
## [3944] "Actinomyces_sp_oral_taxon_181 1.15258870 3.62059933 -1.91677474"
## [3945] "Actinomyces_sp_oral_taxon_414 -2.02386722 -1.55562730 0.01224136"
## [3946] "Actinomyces_sp_oral_taxon_448 -1.78805820 -3.60205688 -0.97732346"
## [3947] "Actinomyces_sp_oral_taxon_897 -3.25445093 -3.49216044 -1.21834235"
## [3948] "Actinomyces_viscosus -1.91657441 -0.25844295 -0.61119183"
## [3949] "Aeriscardovia_aeriphila -0.15418247 0.84090056 -0.80361010"
## [3950] "Alloscardovia_omnicolens -1.67978080 1.54616783 0.35632778"
## [3951] "Bifidobacterium_dentium -1.55241958 -2.14147305 -0.44130556"
## [3952] "Bifidobacterium_longum -2.89331684 -2.83178129 -0.85720826"
## [3953] "Scardovia_wiggsiae 1.12682966 2.28309588 -1.00657121"
## [3954] "Corynebacterium_atypicum -2.72763750 -3.82750955 -0.69152893"
## [3955] "Corynebacterium_durum -0.79661603 2.87664245 -0.09516704"
## [3956] "Corynebacterium_matruchotii -1.33156217 -1.24904455 -0.26270997"
## [3957] "Rothia_aeria -0.04641812 2.77809024 0.28221288"
## [3958] "Rothia_dentocariosa 6.35763323 5.75468661 1.43977927"
## [3959] "Rothia_mucilaginosa 7.59009079 7.10845081 4.91227455"
## [3960] "Cutibacterium_acnes -2.75933851 -0.88550150 -0.72322993"
## [3961] "Propionibacterium_acidifaciens -1.94051223 -0.58407653 0.09559635"
## [3962] "Pseudopropionibacterium_propionicum 0.32925917 2.80486040 -0.62268762"
## [3963] "Atopobium_deltae -1.44569013 -4.51160787 0.59041845"
## [3964] "Atopobium_parvulum 1.95704391 2.98586780 -0.73287618"
## [3965] "Atopobium_rimae 0.32233906 3.61164524 -0.77594256"
## [3966] "Olsenella_profusa 0.49203027 1.43300323 0.98654655"
## [3967] "Olsenella_scatoligenes -0.88106588 1.69910929 -0.34517373"
## [3968] "Olsenella_uli 1.13709753 2.46282108 1.39745090"
## [3969] "Collinsella_aerofaciens -0.32883578 0.86309438 -0.72322993"
## [3970] "Collinsella_intestinalis -0.63568286 0.13622837 -0.53930927"
## [3971] "Collinsella_stercoris -1.18642110 0.74789258 -0.29106902"
## [3972] "Enorma_massiliensis -1.57647018 0.13637369 -0.36898855"
## [3973] "X.Collinsella._massiliensis -1.50742221 1.36586734 -0.72322993"
## [3974] "Asaccharobacter_celatus -2.68075635 -2.02066950 -0.64464777"
## [3975] "Denitrobacterium_detoxificans -2.75933851 -2.17733471 -0.72322993"
## [3976] "Enterorhabdus_caecimuris -2.37372709 -2.77423216 -0.33761851"
## [3977] "Slackia_exigua -0.63153180 2.89708072 -0.10878891"
## [3978] "Slackia_isoflavoniconvertens -1.63238059 0.98043486 -0.72322993"
## [3979] "Rubrobacter_radiotolerans -2.38718052 -4.23391804 -0.35107194"
## [3980] "Thermoleophilum_album -1.26083710 -1.54340109 -1.18022266"
## [3981] "Porphyromonas_endodontalis 0.14168037 1.18881996 -0.92223059"
## [3982] "Porphyromonas_somerae 3.10768502 2.47832163 0.54494858"
## [3983] "Prevotella_histicola 0.06353766 -2.72618451 -0.41078632"
## [3984] "Prevotella_melaninogenica -0.17024265 -2.22218634 1.10482124"
## [3985] "Kouleothrix_aurantiaca -2.62588965 -2.80095979 -0.58978107"
## [3986] "Hydrogenibacillus_schlegelii -2.29441835 -2.67943644 -0.25830977"
## [3987] "Gemella_bergeri -1.33077303 1.98396919 -0.72322993"
## [3988] "Gemella_haemolysans 6.89117112 5.98651168 0.56349304"
## [3989] "Gemella_morbillorum 2.60422810 3.21576461 -0.72322993"
## [3990] "Gemella_sanguinis 6.96018539 6.58220982 5.05560447"
## [3991] "Brochothrix_campestris -1.96068768 -3.82407306 0.07542090"
## [3992] "Staphylococcus_argenteus 9.54296290 9.19057417 6.10548515"
## [3993] "Staphylococcus_aureus 12.33255261 12.37009476 9.58630157"
## [3994] "Staphylococcus_epidermidis -1.37115931 -3.88883699 -0.93458335"
## [3995] "Staphylococcus_schweitzeri 2.15849763 3.66681190 2.78545089"
## [3996] "Abiotrophia_defectiva -1.68890607 2.11396751 0.34720251"
## [3997] "Abiotrophia_sp_HMSC24B09 -1.58307486 2.16993764 0.45303372"
## [3998] "Granulicatella_adiacens 0.73803183 1.57419123 -1.07008350"
## [3999] "Granulicatella_elegans 3.24850815 3.41675906 -1.14422134"
## [4000] "Enterococcus_faecalis -2.42964274 -3.39288691 -0.39353416"
## [4001] "Lactobacillus_rhamnosus -2.23959059 -1.29660158 -0.20348201"
## [4002] "Streptococcus_anginosus 1.33615893 3.79679804 -0.72322993"
## [4003] "Streptococcus_australis 4.15518295 5.00606852 -0.12320370"
## [4004] "Streptococcus_cristatus 0.75560807 1.57093767 0.82226973"
## [4005] "Streptococcus_gordonii 2.23143547 1.77173670 -1.41193948"
## [4006] "Streptococcus_infantis 6.60267294 5.65396300 0.22607152"
## [4007] "Streptococcus_milleri -0.95289292 -3.14031841 -2.03151064"
## [4008] "Streptococcus_mitis 6.70294167 4.63253596 4.22452714"
## [4009] "Streptococcus_oralis 5.18365508 4.81356417 1.73925261"
## [4010] "Streptococcus_parasanguinis 7.52685397 6.68037955 6.23779960"
## [4011] "Streptococcus_peroris 2.37132716 3.21008177 -0.09511833"
## [4012] "Streptococcus_pneumoniae -1.09324118 -1.03013012 -1.01878107"
## [4013] "Streptococcus_pseudopneumoniae 0.02702659 1.26363147 -1.21117785"
## [4014] "Streptococcus_salivarius 3.58335278 4.33143646 2.26739068"
## [4015] "Streptococcus_sanguinis 0.33255317 -1.52690145 -3.78465774"
## [4016] "Streptococcus_sp_A12 0.39325252 1.97738054 -1.01941403"
## [4017] "Streptococcus_sp_F0442 2.72652214 3.05452068 -1.99481515"
## [4018] "Streptococcus_sp_HMSC034E03 -0.38647962 -2.73385652 -1.62404023"
## [4019] "Streptococcus_sp_HMSC067H01 -1.23090841 -2.34167888 -1.09537197"
## [4020] "Streptococcus_sp_HMSC071D03 -0.68948251 -1.12266057 -0.23126576"
## [4021] "Streptococcus_sp_HPH0090 -0.99045263 -0.33668262 -1.95675361"
## [4022] "Streptococcus_sp_M334 2.66901024 -0.30737472 0.67622835"
## [4023] "Streptococcus_vestibularis 0.32896481 -0.46083459 -0.86135962"
## [4024] "Eubacterium_brachy -1.51776518 -1.35001640 -2.98185804"
## [4025] "Eubacterium_infirmum -2.75933851 -0.80395584 -0.72322993"
## [4026] "Eubacterium_nodatum -3.33992621 -3.46090474 -1.30381763"
## [4027] "Eubacterium_sulci -4.47090697 -2.30631589 -2.73357931"
## [4028] "Mogibacterium_diversum -2.82095127 2.27845624 -0.84910677"
## [4029] "Mogibacterium_pumilum -3.48353896 -0.93644096 -1.44743038"
## [4030] "Mogibacterium_timidum -2.45292346 -2.14439964 -0.41681488"
## [4031] "Lachnoanaerobaculum_saburreum -0.20748956 -2.39923871 -2.42158369"
## [4032] "Oribacterium_parvum -1.27227884 -4.17404413 -0.60363683"
## [4033] "Oribacterium_sinus -1.55201645 -2.44916466 -4.21363934"
## [4034] "Oribacterium_sp_oral_taxon_078 -2.68040830 -1.32216663 -0.64429972"
## [4035] "Stomatobaculum_longum 1.08459862 -5.96748606 -0.21971603"
## [4036] "Peptostreptococcus_stomatis -0.16356449 2.17186253 0.71639538"
## [4037] "Bulleidia_extructa 0.13001610 0.74134738 -0.60534397"
## [4038] "Solobacterium_moorei 1.32885015 2.57810967 -0.78156488"
## [4039] "Limnochorda_pilosa -1.66173198 1.17052601 -0.67291179"
## [4040] "Veillonella_atypica -0.32680686 -4.78435215 1.54983679"
## [4041] "Veillonella_dispar 0.37246870 -3.29713520 0.31132552"
## [4042] "Veillonella_infantium 0.90428562 -4.45077398 -0.14945139"
## [4043] "Veillonella_parvula -0.82171222 -2.32336319 -1.09097326"
## [4044] "Veillonella_sp_T11011_6 -1.37205416 -5.23699505 -0.59401369"
## [4045] "Parvimonas_micra -0.04556391 -0.28333589 -3.02702889"
## [4046] "Parvimonas_sp_oral_taxon_110 -2.48971743 -2.09215308 -1.59168074"
## [4047] "Parvimonas_sp_oral_taxon_393 -2.45767652 -1.85267883 -1.74451306"
## [4048] "Fusobacterium_nucleatum -1.83830447 -3.23364556 -0.72322993"
## [4049] "Leptotrichia_wadei 0.18834586 -6.75373362 -0.47841368"
## [4050] "Gemmata_obscuriglobus -2.75933851 -2.87258480 -0.72322993"
## [4051] "Paludisphaera_borealis -1.59401389 -1.00896948 -0.73568091"
## [4052] "Achromobacter_xylosoxidans -0.81355356 -5.18486262 0.85457749"
## [4053] "Cupriavidus_sp 2.46658273 4.55225860 -0.72322993"
## [4054] "Sutterella_parvirubra 0.35773876 -1.69836689 -0.72322993"
## [4055] "Anaerobiospirillum_thomasii -2.75933851 -1.24548171 -0.72322993"
## [4056] "Cardiobacterium_hominis -1.44534326 -3.79571130 -1.00937164"
## [4057] "Cardiobacterium_valvarum -1.34291062 -3.68506564 -0.68593858"
## [4058] "Alkalilimnicola_ehrlichii -1.03215582 -3.23314745 0.74768693"
## [4059] "Escherichia_coli -1.01855426 -4.98222188 0.86369532"
## [4060] "Thiohalorhabdus_denitrificans -0.46814530 -2.72261828 0.07443016"
## [4061] "Pseudomonas_aeruginosa 9.16544138 4.60886400 10.34931209"
## [4062] "Acholeplasma_oculi -1.71095940 -1.26396428 0.32514918"
## [4063] "Candida_parapsilosis -1.17508444 -5.12550056 -1.08969476"
## [4064] "Nakamurella_silvestris -2.68598344 -3.59715561 -0.64987486"
## [4065] "Prevotella_jejuni -1.85110681 -2.25697099 -0.79306805"
## [4066] "Prevotella_pallens -2.04761358 -3.98886235 -0.08072019"
## [4067] "Prevotella_salivae -2.31681660 -2.53843666 -0.36163554"
## [4068] "Tannerella_sp_oral_taxon_HOT_286 -0.29309038 -2.54104370 -1.17246850"
## [4069] "Capnocytophaga_gingivalis -1.07160245 0.35814197 -0.74994375"
## [4070] "Lactobacillus_gasseri -0.63626848 -4.61900668 -0.06439761"
## [4071] "Sharpea_azabuensis -2.52414415 -3.56592176 -0.48803558"
## [4072] "Streptococcus_mutans -0.76385309 -2.13565026 -2.05480514"
## [4073] "Oribacterium_asaccharolyticum -2.92233427 -3.33277586 -0.88622569"
## [4074] "Megasphaera_micronuciformis -2.17353236 -4.66707162 0.01211425"
## [4075] "Neisseria_flavescens 6.19339198 1.66700111 3.21513715"
## [4076] "Neisseria_subflava 2.91901703 -1.11110910 3.54306446"
## [4077] "Stenotrophomonas_maltophilia 9.16125287 7.38857705 9.22006566"
## [4078] "Stenotrophomonas_pavanii 1.19190513 1.85048265 4.61332912"
## [4079] "Stenotrophomonas_rhizophila 3.76941298 1.86458768 5.84766324"
## [4080] "Streptococcus_sobrinus -3.01565467 -3.66152246 -0.97954609"
## [4081] "Eggerthia_catenaformis -1.59589998 -3.22367133 -0.84116739"
## [4082] "Haemophilus_parainfluenzae -2.59919988 -5.53107291 0.51654124"
## [4083] " CFB_d_benzonase CFB_c_qiaamp CFB_c_molysis"
## [4084] "Actinobaculum_sp_oral_taxon_183 -2.67643135 2.13895289 2.005384775"
## [4085] "Actinomyces_georgiae -4.26577071 -2.59501339 -0.205621200"
## [4086] "Actinomyces_graevenitzii 1.88087478 7.97862746 8.223830272"
## [4087] "Actinomyces_hongkongensis -4.26430039 -2.79733811 -0.499843544"
## [4088] "Actinomyces_johnsonii 2.21974319 -1.92673004 -2.710038926"
## [4089] "Actinomyces_massiliensis -0.98023932 -0.90098053 0.885166182"
## [4090] "Actinomyces_meyeri -1.82804100 -2.08495273 -0.928574401"
## [4091] "Actinomyces_naeslundii -0.48621230 3.10812047 2.489724459"
## [4092] "Actinomyces_odontolyticus 2.37217420 6.44069602 5.861250008"
## [4093] "Actinomyces_oris 5.92900955 6.66769400 6.620578409"
## [4094] "Actinomyces_sp_HMSC035G02 2.34435337 5.53529489 4.940716569"
## [4095] "Actinomyces_sp_HPA0247 1.56558152 4.08040410 3.339477085"
## [4096] "Actinomyces_sp_ICM47 2.85246774 4.63452040 4.255852539"
## [4097] "Actinomyces_sp_S6_Spd3 1.54511794 6.78464893 6.246494337"
## [4098] "Actinomyces_sp_oral_taxon_170 -1.37704344 1.41682314 1.123919554"
## [4099] "Actinomyces_sp_oral_taxon_180 1.56354086 3.61578992 2.753194820"
## [4100] "Actinomyces_sp_oral_taxon_181 2.31620793 7.53555810 7.136939055"
## [4101] "Actinomyces_sp_oral_taxon_414 -3.59538583 -3.62179252 0.016179391"
## [4102] "Actinomyces_sp_oral_taxon_448 -2.86697347 -5.18589767 -5.759410488"
## [4103] "Actinomyces_sp_oral_taxon_897 -3.06880048 -3.83905659 -4.074325990"
## [4104] "Actinomyces_viscosus -0.23521848 3.61487797 2.798195936"
## [4105] "Aeriscardovia_aeriphila 0.32786719 1.58781010 0.928634912"
## [4106] "Alloscardovia_omnicolens 1.12044953 3.60177871 2.967688018"
## [4107] "Bifidobacterium_dentium -2.66638419 -2.03465504 -0.496129148"
## [4108] "Bifidobacterium_longum -1.59488558 -3.35676421 -2.378414661"
## [4109] "Scardovia_wiggsiae 0.71178164 4.52412286 3.657207971"
## [4110] "Corynebacterium_atypicum -4.29915612 -4.72837693 -4.512283964"
## [4111] "Corynebacterium_durum -0.70902184 1.54429952 0.623390588"
## [4112] "Corynebacterium_matruchotii -3.87033716 -3.39920799 0.486996772"
## [4113] "Rothia_aeria -1.53881340 0.19720108 1.676922163"
## [4114] "Rothia_dentocariosa 5.84519763 8.07366605 7.299467509"
## [4115] "Rothia_mucilaginosa 6.77581034 8.49055834 7.913822679"
## [4116] "Cutibacterium_acnes -4.33085712 -1.30016577 -0.161198343"
## [4117] "Propionibacterium_acidifaciens -2.57376127 -2.98828871 -3.880423846"
## [4118] "Pseudopropionibacterium_propionicum 1.52833197 2.23225311 1.784582986"
## [4119] "Atopobium_deltae -3.01720874 -5.09501311 -4.940496091"
## [4120] "Atopobium_parvulum 1.92430453 4.94754137 4.378247549"
## [4121] "Atopobium_rimae 2.41996395 3.98478797 3.487515027"
## [4122] "Olsenella_profusa -0.33105796 -0.22875506 0.220716909"
## [4123] "Olsenella_scatoligenes 0.34535026 1.49472257 1.361098496"
## [4124] "Olsenella_uli -0.74981183 0.98790739 0.632050227"
## [4125] "Collinsella_aerofaciens -0.13820819 1.33047866 1.061654194"
## [4126] "Collinsella_intestinalis -1.15908129 -0.05790579 -0.055779206"
## [4127] "Collinsella_stercoris -1.64024045 0.57014570 0.048278898"
## [4128] "Enorma_massiliensis -3.01581153 0.28707198 -0.175815423"
## [4129] "X.Collinsella._massiliensis 0.58216567 1.68340512 1.393751283"
## [4130] "Asaccharobacter_celatus -4.25227496 -3.96223184 -0.979517681"
## [4131] "Denitrobacterium_detoxificans -4.33085712 -1.53495663 -1.266488709"
## [4132] "Enterorhabdus_caecimuris -3.94524570 -4.24338945 -1.698083406"
## [4133] "Slackia_exigua 0.10854763 2.38512057 2.011401907"
## [4134] "Slackia_isoflavoniconvertens -1.32737688 0.50547305 0.692106264"
## [4135] "Rubrobacter_radiotolerans -3.95869913 -4.54149723 -3.356319726"
## [4136] "Thermoleophilum_album -1.53568716 -0.85445129 -0.196636760"
## [4137] "Porphyromonas_endodontalis -1.47925497 -4.03543402 -8.004589042"
## [4138] "Porphyromonas_somerae 2.03173522 -4.41185530 -4.558980918"
## [4139] "Prevotella_histicola -1.08069858 -0.06769582 -1.423289543"
## [4140] "Prevotella_melaninogenica 0.54831312 -4.23717509 -5.365674974"
## [4141] "Kouleothrix_aurantiaca -1.90345061 -4.37106037 -1.255432390"
## [4142] "Hydrogenibacillus_schlegelii -3.86593696 -3.46843164 -3.191595351"
## [4143] "Gemella_bergeri 1.34732765 2.73817363 2.102389884"
## [4144] "Gemella_haemolysans 6.81298463 5.31888252 4.840685071"
## [4145] "Gemella_morbillorum 2.38764404 3.81892307 3.152767304"
## [4146] "Gemella_sanguinis 6.99904869 6.26276346 5.500702223"
## [4147] "Brochothrix_campestris -3.53220629 -2.74287813 -0.911702754"
## [4148] "Staphylococcus_argenteus 8.69901885 5.20647096 3.365912107"
## [4149] "Staphylococcus_aureus 11.60289822 7.10631487 7.242411065"
## [4150] "Staphylococcus_epidermidis -2.89208653 -5.27189410 -5.904982186"
## [4151] "Staphylococcus_schweitzeri 3.20695272 2.66762393 0.699089234"
## [4152] "Abiotrophia_defectiva -0.66807216 3.03365405 1.999582361"
## [4153] "Abiotrophia_sp_HMSC24B09 -0.54227260 1.99918447 2.391259689"
## [4154] "Granulicatella_adiacens 0.93884383 2.22694502 1.655586176"
## [4155] "Granulicatella_elegans 3.52994207 5.07635930 4.649800665"
## [4156] "Enterococcus_faecalis -4.00116136 -4.34951037 -6.496957999"
## [4157] "Lactobacillus_rhamnosus -3.81110921 -2.97459987 -2.358296832"
## [4158] "Streptococcus_anginosus 3.78326460 4.03442498 3.750711314"
## [4159] "Streptococcus_australis 5.05105407 5.12072195 3.968145433"
## [4160] "Streptococcus_cristatus 0.56316252 1.59583402 2.396002991"
## [4161] "Streptococcus_gordonii 1.38827431 4.30969708 4.047020827"
## [4162] "Streptococcus_infantis 6.27469754 5.98114890 5.657708364"
## [4163] "Streptococcus_milleri -2.40837074 -3.76570278 -5.153310029"
## [4164] "Streptococcus_mitis 5.53103340 4.82447024 5.635022002"
## [4165] "Streptococcus_oralis 5.75492985 5.14527797 5.429065393"
## [4166] "Streptococcus_parasanguinis 7.03421787 8.86159628 8.371465791"
## [4167] "Streptococcus_peroris 2.99139401 3.91990194 4.933612963"
## [4168] "Streptococcus_pneumoniae -1.00830278 -5.11832332 2.053795732"
## [4169] "Streptococcus_pseudopneumoniae 0.05124278 -0.07324493 1.470793212"
## [4170] "Streptococcus_salivarius 4.34742469 8.60061324 7.977247066"
## [4171] "Streptococcus_sanguinis -0.51248389 5.47343720 6.370121591"
## [4172] "Streptococcus_sp_A12 0.20785965 2.42921337 1.545328397"
## [4173] "Streptococcus_sp_F0442 2.17215759 5.30194539 4.716534267"
## [4174] "Streptococcus_sp_HMSC034E03 -0.77195812 -3.61453809 -0.001269004"
## [4175] "Streptococcus_sp_HMSC067H01 -1.71062683 -4.41645970 -0.799846879"
## [4176] "Streptococcus_sp_HMSC071D03 -2.44399717 -3.55324088 -0.587111961"
## [4177] "Streptococcus_sp_HPH0090 0.07842656 1.16178167 1.869067909"
## [4178] "Streptococcus_sp_M334 -0.14493595 1.41296513 2.429202158"
## [4179] "Streptococcus_vestibularis -2.10467907 4.52948801 3.875662768"
## [4180] "Eubacterium_brachy -1.74587457 1.81182860 1.496767250"
## [4181] "Eubacterium_infirmum -2.15086954 -0.04633390 0.540285952"
## [4182] "Eubacterium_nodatum -1.71432065 -4.05636060 -5.808736054"
## [4183] "Eubacterium_sulci -1.89943676 0.74783816 -0.042753941"
## [4184] "Mogibacterium_diversum 1.82554527 5.47824226 5.185818336"
## [4185] "Mogibacterium_pumilum -1.39363653 1.04275647 0.820601345"
## [4186] "Mogibacterium_timidum -2.33733223 -0.16242719 0.240543234"
## [4187] "Lachnoanaerobaculum_saburreum 0.62464535 1.37430598 2.831944383"
## [4188] "Oribacterium_parvum -2.38493966 -5.45450644 -6.549850273"
## [4189] "Oribacterium_sinus -2.04428616 4.93926599 2.947910527"
## [4190] "Oribacterium_sp_oral_taxon_078 -4.25192691 -3.21793728 -0.763907728"
## [4191] "Stomatobaculum_longum 1.53625409 -3.49488089 -0.524839982"
## [4192] "Peptostreptococcus_stomatis -0.30204166 1.46494390 -0.736376587"
## [4193] "Bulleidia_extructa 0.09695627 0.28166219 -0.154384228"
## [4194] "Solobacterium_moorei 2.84836925 3.19607118 2.951794906"
## [4195] "Limnochorda_pilosa 0.80132024 1.79767794 1.401238604"
## [4196] "Veillonella_atypica 1.23737541 -2.90532399 2.023757595"
## [4197] "Veillonella_dispar -0.11199244 -0.98887596 1.903530759"
## [4198] "Veillonella_infantium -0.43984759 -3.93236961 0.776995483"
## [4199] "Veillonella_parvula 0.99333648 -3.35988167 0.281712260"
## [4200] "Veillonella_sp_T11011_6 -0.89484438 -3.29865368 -0.096963517"
## [4201] "Parvimonas_micra 0.65375273 5.44526810 4.874258426"
## [4202] "Parvimonas_sp_oral_taxon_110 -3.02582294 0.05816350 -0.898086092"
## [4203] "Parvimonas_sp_oral_taxon_393 -1.74595749 0.69310204 0.739260490"
## [4204] "Fusobacterium_nucleatum 0.12182467 -3.20391657 0.736168409"
## [4205] "Leptotrichia_wadei -2.31450938 -4.01664197 -2.535564537"
## [4206] "Gemmata_obscuriglobus -4.33085712 -3.05054523 -0.089634352"
## [4207] "Paludisphaera_borealis -4.34330810 -1.67337063 -0.076624283"
## [4208] "Achromobacter_xylosoxidans -2.30900149 -5.49270563 -7.616034322"
## [4209] "Cupriavidus_sp 2.43228659 4.70023875 4.515125076"
## [4210] "Sutterella_parvirubra 0.34775270 -4.54743811 -0.954561969"
## [4211] "Anaerobiospirillum_thomasii -3.11532867 -4.14334947 -0.078889764"
## [4212] "Cardiobacterium_hominis -3.09963813 -5.48810399 -5.302744208"
## [4213] "Cardiobacterium_valvarum -3.15753125 -5.39321788 -6.086183087"
## [4214] "Alkalilimnicola_ehrlichii 0.63741671 -2.73198882 -8.727597526"
## [4215] "Escherichia_coli -2.45266749 -5.17896164 -7.792386278"
## [4216] "Thiohalorhabdus_denitrificans 0.21399183 -0.56809583 -4.050734735"
## [4217] "Pseudomonas_aeruginosa 7.91685396 5.85734198 1.554592324"
## [4218] "Acholeplasma_oculi -2.29994704 -0.58931044 -1.122985614"
## [4219] "Candida_parapsilosis -2.32243700 -5.18693922 -5.327410294"
## [4220] "Nakamurella_silvestris -4.25750205 -4.55071754 -4.809251613"
## [4221] "Prevotella_jejuni -0.73727631 -5.50805859 -6.072462081"
## [4222] "Prevotella_pallens 0.59016989 -5.40779672 -6.791842792"
## [4223] "Prevotella_salivae -0.55124003 -3.79782884 -5.695186188"
## [4224] "Tannerella_sp_oral_taxon_HOT_286 -1.97152185 -5.81927299 -7.841100655"
## [4225] "Capnocytophaga_gingivalis -2.93155124 0.05269318 -6.606878625"
## [4226] "Lactobacillus_gasseri -2.21629902 -4.26450970 -4.247489738"
## [4227] "Sharpea_azabuensis -4.09566277 -4.75403926 -3.940490875"
## [4228] "Streptococcus_mutans -1.25290955 0.69995254 1.381120737"
## [4229] "Oribacterium_asaccharolyticum -1.90845476 -0.67830606 -3.157619309"
## [4230] "Megasphaera_micronuciformis -1.24622197 -4.83397381 -5.789983290"
## [4231] "Neisseria_flavescens 6.10023818 -2.36653098 -1.430562623"
## [4232] "Neisseria_subflava 4.70573801 -3.69384931 -3.068091243"
## [4233] "Stenotrophomonas_maltophilia 9.98563601 -2.58415533 -4.997048133"
## [4234] "Stenotrophomonas_pavanii 2.58120652 -4.27177919 -8.005165051"
## [4235] "Stenotrophomonas_rhizophila 5.55517041 -3.13501493 -7.150020843"
## [4236] "Streptococcus_sobrinus -3.05430396 -3.35976267 -5.209871621"
## [4237] "Eggerthia_catenaformis -1.58922651 -0.82042510 -6.508175215"
## [4238] "Haemophilus_parainfluenzae -0.46286551 -4.75448554 -6.428217539"
## [4239] " CFB_c_lyPMA CFB_c_host_zero CFB_c_control"
## [4240] "Actinobaculum_sp_oral_taxon_183 -0.22000158 1.48756400 1.81610700"
## [4241] "Actinomyces_georgiae -2.92633484 -2.23001151 -0.89022626"
## [4242] "Actinomyces_graevenitzii 6.30027187 7.73464018 4.82640431"
## [4243] "Actinomyces_hongkongensis -2.89595686 -2.45987916 -0.85984828"
## [4244] "Actinomyces_johnsonii -5.72744657 -2.55686139 -5.11942860"
## [4245] "Actinomyces_massiliensis -3.76891313 -0.26229303 -1.73280455"
## [4246] "Actinomyces_meyeri -2.79999307 -0.77190136 -1.61358354"
## [4247] "Actinomyces_naeslundii -3.17601899 2.77407568 -1.13991041"
## [4248] "Actinomyces_odontolyticus 4.30187825 5.90146553 2.50083290"
## [4249] "Actinomyces_oris 3.98344369 6.19304310 0.34619158"
## [4250] "Actinomyces_sp_HMSC035G02 3.23506458 5.12478748 0.64799181"
## [4251] "Actinomyces_sp_HPA0247 1.15788955 3.53259521 0.23061238"
## [4252] "Actinomyces_sp_ICM47 1.73342403 4.16956942 0.30632426"
## [4253] "Actinomyces_sp_S6_Spd3 4.53107685 6.22743379 1.53204369"
## [4254] "Actinomyces_sp_oral_taxon_170 -3.02066084 1.17887316 -0.98455226"
## [4255] "Actinomyces_sp_oral_taxon_180 -1.69473651 2.70998613 -0.72322993"
## [4256] "Actinomyces_sp_oral_taxon_181 4.73342319 7.20143382 1.66405974"
## [4257] "Actinomyces_sp_oral_taxon_414 -1.52711334 -1.05887343 0.50899524"
## [4258] "Actinomyces_sp_oral_taxon_448 -3.04429947 -4.85829815 -2.23356473"
## [4259] "Actinomyces_sp_oral_taxon_897 -4.29974811 -4.53745761 -2.26363953"
## [4260] "Actinomyces_viscosus -0.77118516 0.88694630 0.53419742"
## [4261] "Aeriscardovia_aeriphila 0.02497753 1.02006056 -0.62445010"
## [4262] "Alloscardovia_omnicolens -0.06540601 3.16054261 1.97070257"
## [4263] "Bifidobacterium_dentium -1.03648455 -1.62553802 0.07462947"
## [4264] "Bifidobacterium_longum -4.10228799 -4.04075245 -2.06617941"
## [4265] "Scardovia_wiggsiae 2.41251828 3.56878450 0.27911740"
## [4266] "Corynebacterium_atypicum -2.81625291 -3.91612496 -0.78014433"
## [4267] "Corynebacterium_durum -2.54718782 1.12607066 -1.84573883"
## [4268] "Corynebacterium_matruchotii -1.17557518 -1.09305756 -0.10672298"
## [4269] "Rothia_aeria -1.19646145 1.62804691 -0.86783045"
## [4270] "Rothia_dentocariosa 8.02594211 7.42299549 3.10808815"
## [4271] "Rothia_mucilaginosa 8.42045378 7.93881380 5.74263755"
## [4272] "Cutibacterium_acnes -2.75933851 -0.88550150 -0.72322993"
## [4273] "Propionibacterium_acidifaciens -4.32878548 -2.97234978 -2.29267690"
## [4274] "Pseudopropionibacterium_propionicum -0.63136838 1.84423284 -1.58331517"
## [4275] "Atopobium_deltae -3.16368616 -6.22960391 -1.12757758"
## [4276] "Atopobium_parvulum 3.69340515 4.72222903 1.00348505"
## [4277] "Atopobium_rimae 0.36157920 3.65088537 -0.73670243"
## [4278] "Olsenella_profusa -1.48552291 -0.54454995 -0.99100664"
## [4279] "Olsenella_scatoligenes -1.30083640 1.27933877 -0.76494424"
## [4280] "Olsenella_uli -0.70048242 0.62524113 -0.44012905"
## [4281] "Collinsella_aerofaciens -0.32883578 0.86309438 -0.72322993"
## [4282] "Collinsella_intestinalis -0.95466388 -0.18275266 -0.85829029"
## [4283] "Collinsella_stercoris -1.97303094 -0.03871725 -1.07767885"
## [4284] "Enorma_massiliensis -2.01788514 -0.30504127 -0.81040350"
## [4285] "X.Collinsella._massiliensis -1.50742221 1.36586734 -0.72322993"
## [4286] "Asaccharobacter_celatus -2.76922269 -2.10913585 -0.73311411"
## [4287] "Denitrobacterium_detoxificans -2.75933851 -2.17733471 -0.72322993"
## [4288] "Enterorhabdus_caecimuris -3.11361369 -3.51411875 -1.07750511"
## [4289] "Slackia_exigua -1.16083184 2.36778067 -0.63808896"
## [4290] "Slackia_isoflavoniconvertens -1.63238059 0.98043486 -0.72322993"
## [4291] "Rubrobacter_radiotolerans -2.78357735 -4.63031487 -0.74746877"
## [4292] "Thermoleophilum_album -0.95300724 -1.23557123 -0.87239280"
## [4293] "Porphyromonas_endodontalis -1.19775467 -0.15061508 -2.26166563"
## [4294] "Porphyromonas_somerae -2.16636622 -2.79572961 -4.72910266"
## [4295] "Prevotella_histicola 5.37020303 2.58048086 4.89587905"
## [4296] "Prevotella_melaninogenica -0.34242713 -2.39437082 0.93263676"
## [4297] "Kouleothrix_aurantiaca -2.75242033 -2.92749047 -0.71631175"
## [4298] "Hydrogenibacillus_schlegelii -3.04392715 -3.42894524 -1.00781857"
## [4299] "Gemella_bergeri -1.33077303 1.98396919 -0.72322993"
## [4300] "Gemella_haemolysans 5.62532577 4.72066633 -0.70235231"
## [4301] "Gemella_morbillorum 2.60422810 3.21576461 -0.72322993"
## [4302] "Gemella_sanguinis 6.03326452 5.65528896 4.12868361"
## [4303] "Brochothrix_campestris -1.84212883 -3.70551421 0.19397975"
## [4304] "Staphylococcus_argenteus 5.34998380 4.99759506 1.91250605"
## [4305] "Staphylococcus_aureus 7.24266196 7.28020411 4.49641092"
## [4306] "Staphylococcus_epidermidis -2.64591398 -5.16359166 -2.20933803"
## [4307] "Staphylococcus_schweitzeri -0.46751245 1.04080182 0.15944081"
## [4308] "Abiotrophia_defectiva -1.42381143 2.37906215 0.61229715"
## [4309] "Abiotrophia_sp_HMSC24B09 -1.17566704 2.57734545 0.86044154"
## [4310] "Granulicatella_adiacens 0.76431890 1.60047830 -1.04379643"
## [4311] "Granulicatella_elegans 4.47035826 4.63860917 0.07762876"
## [4312] "Enterococcus_faecalis -3.15915077 -4.12239493 -1.12304219"
## [4313] "Lactobacillus_rhamnosus -3.25590160 -2.31291259 -1.21979302"
## [4314] "Streptococcus_anginosus 1.33615893 3.79679804 -0.72322993"
## [4315] "Streptococcus_australis 3.14856072 3.99944628 -1.12982594"
## [4316] "Streptococcus_cristatus 1.21119437 2.02652397 1.27785603"
## [4317] "Streptococcus_gordonii 4.27873311 3.81903434 0.63535816"
## [4318] "Streptococcus_infantis 6.58229739 5.63358745 0.20569597"
## [4319] "Streptococcus_milleri -1.08620640 -3.27363190 -2.16482413"
## [4320] "Streptococcus_mitis 6.94002924 4.86962353 4.46161472"
## [4321] "Streptococcus_oralis 5.18365508 4.81356417 1.73925261"
## [4322] "Streptococcus_parasanguinis 9.14390447 8.29743004 7.85485010"
## [4323] "Streptococcus_peroris 4.36642883 5.20518344 1.89998334"
## [4324] "Streptococcus_pneumoniae -2.07641545 -2.01330439 -2.00195535"
## [4325] "Streptococcus_pseudopneumoniae -0.24292053 0.99368435 -1.48112497"
## [4326] "Streptococcus_salivarius 7.16078725 7.90887093 5.84482516"
## [4327] "Streptococcus_sanguinis 6.85280398 4.99334936 2.73559307"
## [4328] "Streptococcus_sp_A12 0.44166177 2.02578980 -0.97100477"
## [4329] "Streptococcus_sp_F0442 4.62075533 4.94875387 -0.10058197"
## [4330] "Streptococcus_sp_HMSC034E03 -0.96487785 -3.31225475 -2.20243846"
## [4331] "Streptococcus_sp_HMSC067H01 -2.55738421 -3.66815468 -2.42184778"
## [4332] "Streptococcus_sp_HMSC071D03 -2.01019256 -2.44337062 -1.55197581"
## [4333] "Streptococcus_sp_HPH0090 0.38807978 1.04184978 -0.57822120"
## [4334] "Streptococcus_sp_M334 3.74900492 0.77261996 1.75622303"
## [4335] "Streptococcus_vestibularis 3.62267440 2.83287500 2.43234997"
## [4336] "Eubacterium_brachy 0.61180727 0.77955605 -0.85228559"
## [4337] "Eubacterium_infirmum -2.75933851 -0.80395584 -0.72322993"
## [4338] "Eubacterium_nodatum -4.53977841 -4.66075694 -2.50366983"
## [4339] "Eubacterium_sulci -1.63744844 0.52714264 0.09987922"
## [4340] "Mogibacterium_diversum 0.09577356 5.19518107 2.06761806"
## [4341] "Mogibacterium_pumilum -2.09147818 0.45561983 -0.05536960"
## [4342] "Mogibacterium_timidum -0.88757884 -0.57905502 1.14852974"
## [4343] "Lachnoanaerobaculum_saburreum 2.13753106 -0.05421808 -0.07656306"
## [4344] "Oribacterium_parvum -2.54884246 -5.45060775 -1.88020044"
## [4345] "Oribacterium_sinus 5.08857954 4.19143133 2.42695665"
## [4346] "Oribacterium_sp_oral_taxon_078 -2.68842488 -1.33018321 -0.65231630"
## [4347] "Stomatobaculum_longum 2.53296485 -4.51911983 1.22865020"
## [4348] "Peptostreptococcus_stomatis -1.78209572 0.55333129 -0.90213585"
## [4349] "Bulleidia_extructa -0.53454296 0.07678832 -1.26990303"
## [4350] "Solobacterium_moorei 1.40420621 2.65346574 -0.70620882"
## [4351] "Limnochorda_pilosa -1.61400369 1.21825430 -0.62518350"
## [4352] "Veillonella_atypica 2.49489113 -1.96265416 4.37153478"
## [4353] "Veillonella_dispar 3.37727810 -0.29232580 3.31613493"
## [4354] "Veillonella_infantium 1.77876563 -3.57629397 0.72502863"
## [4355] "Veillonella_parvula -0.39881204 -1.90046300 -0.66807308"
## [4356] "Veillonella_sp_T11011_6 0.68354541 -3.18139548 1.46158588"
## [4357] "Parvimonas_micra 3.92047081 3.68269882 0.93900582"
## [4358] "Parvimonas_sp_oral_taxon_110 0.30631086 0.70387520 1.20434755"
## [4359] "Parvimonas_sp_oral_taxon_393 -0.31421243 0.29078527 0.39895103"
## [4360] "Fusobacterium_nucleatum -1.83830447 -3.23364556 -0.72322993"
## [4361] "Leptotrichia_wadei 1.58951558 -5.35256390 0.92275604"
## [4362] "Gemmata_obscuriglobus -2.75933851 -2.87258480 -0.72322993"
## [4363] "Paludisphaera_borealis -1.60839089 -1.02334648 -0.75005791"
## [4364] "Achromobacter_xylosoxidans -2.18871239 -6.56002145 -0.52058134"
## [4365] "Cupriavidus_sp 2.46658273 4.55225860 -0.72322993"
## [4366] "Sutterella_parvirubra 0.35773876 -1.69836689 -0.72322993"
## [4367] "Anaerobiospirillum_thomasii -2.75933851 -1.24548171 -0.72322993"
## [4368] "Cardiobacterium_hominis -2.69619103 -5.04655906 -2.26021940"
## [4369] "Cardiobacterium_valvarum -2.59394731 -4.93610232 -1.93697527"
## [4370] "Alkalilimnicola_ehrlichii -1.93312748 -4.13411912 -0.15328473"
## [4371] "Escherichia_coli -2.39613708 -6.35980471 -0.51388750"
## [4372] "Thiohalorhabdus_denitrificans 0.93421110 -1.32026187 1.47678657"
## [4373] "Pseudomonas_aeruginosa 9.13496829 4.57839091 10.31883900"
## [4374] "Acholeplasma_oculi -2.51573806 -2.06874294 -0.47962948"
## [4375] "Candida_parapsilosis -2.46142453 -6.41184064 -2.37603484"
## [4376] "Nakamurella_silvestris -2.91049971 -3.82167188 -0.87439113"
## [4377] "Prevotella_jejuni -1.62669934 -2.03256353 -0.56866058"
## [4378] "Prevotella_pallens -2.19895090 -4.14019967 -0.23205751"
## [4379] "Prevotella_salivae -1.25785136 -1.47947143 0.69732969"
## [4380] "Tannerella_sp_oral_taxon_HOT_286 -1.45704910 -3.70500243 -2.33642722"
## [4381] "Capnocytophaga_gingivalis -1.17591578 0.25382864 -0.85425708"
## [4382] "Lactobacillus_gasseri -1.57796655 -5.56070475 -1.00609569"
## [4383] "Sharpea_azabuensis -2.76977380 -3.81155141 -0.73366522"
## [4384] "Streptococcus_mutans 1.21834923 -0.15344794 -0.07260283"
## [4385] "Oribacterium_asaccharolyticum -0.61396762 -1.02440921 1.42214096"
## [4386] "Megasphaera_micronuciformis -2.68946094 -5.18300019 -0.50381432"
## [4387] "Neisseria_flavescens 4.04502585 -0.48136502 1.06677103"
## [4388] "Neisseria_subflava 0.58164965 -3.44847648 1.20569708"
## [4389] "Stenotrophomonas_maltophilia -0.47982624 -2.25250206 -0.42101345"
## [4390] "Stenotrophomonas_pavanii -4.40381924 -3.74524172 -0.98239525"
## [4391] "Stenotrophomonas_rhizophila -2.48475687 -4.38958217 -0.40650661"
## [4392] "Streptococcus_sobrinus -4.02772488 -4.67359267 -1.99161630"
## [4393] "Eggerthia_catenaformis -0.03598840 -1.66375975 0.71874418"
## [4394] "Haemophilus_parainfluenzae -2.78007430 -5.71194733 0.33566682"
## [4395] " CFB_c_benzonase CFB_b_qiaamp CFB_b_molysis"
## [4396] "Actinobaculum_sp_oral_taxon_183 1.41636106 -0.204983191 -0.33855130"
## [4397] "Actinomyces_georgiae -4.49785346 -2.364168876 0.02522332"
## [4398] "Actinomyces_graevenitzii 6.98758938 3.790203226 4.03540603"
## [4399] "Actinomyces_hongkongensis -4.46747548 -2.621788165 -0.32429360"
## [4400] "Actinomyces_johnsonii -3.61124317 3.657876048 2.87456717"
## [4401] "Actinomyces_massiliensis -1.26295275 0.987610143 2.77375686"
## [4402] "Actinomyces_meyeri -2.68687742 -0.393875474 0.76250286"
## [4403] "Actinomyces_naeslundii -1.50731159 3.413130306 2.79473429"
## [4404] "Actinomyces_odontolyticus 4.41494450 6.901931111 6.32248510"
## [4405] "Actinomyces_oris 5.92900955 6.667693997 6.62057841"
## [4406] "Actinomyces_sp_HMSC035G02 3.52514854 5.730956738 5.13637842"
## [4407] "Actinomyces_sp_HPA0247 2.25353833 7.214339571 6.47341256"
## [4408] "Actinomyces_sp_ICM47 2.88773546 4.971869825 4.59320197"
## [4409] "Actinomyces_sp_S6_Spd3 5.26819732 4.268245867 3.73009127"
## [4410] "Actinomyces_sp_oral_taxon_170 -3.37619281 1.654581099 1.36167751"
## [4411] "Actinomyces_sp_oral_taxon_180 1.56354086 3.615789915 2.75319482"
## [4412] "Actinomyces_sp_oral_taxon_181 5.89704241 5.213501857 4.81488281"
## [4413] "Actinomyces_sp_oral_taxon_414 -3.09863196 -4.946421994 -1.30845009"
## [4414] "Actinomyces_sp_oral_taxon_448 -4.12321474 0.667194014 0.09368119"
## [4415] "Actinomyces_sp_oral_taxon_897 -4.11409765 0.166422433 -0.06884697"
## [4416] "Actinomyces_viscosus 0.91017077 2.369724612 1.55304257"
## [4417] "Aeriscardovia_aeriphila 0.50702719 1.146959804 0.48778461"
## [4418] "Alloscardovia_omnicolens 2.73482432 1.061499293 0.42740861"
## [4419] "Bifidobacterium_dentium -2.15044916 -0.165237643 1.37328825"
## [4420] "Bifidobacterium_longum -2.80385674 -0.886990137 0.09135941"
## [4421] "Scardovia_wiggsiae 1.99747026 3.863155679 2.99624079"
## [4422] "Corynebacterium_atypicum -4.38777153 -4.715399800 -4.49930684"
## [4423] "Corynebacterium_durum -2.45959363 0.930202674 0.00929374"
## [4424] "Corynebacterium_matruchotii -3.71435017 -2.389524679 1.49668008"
## [4425] "Rothia_aeria -2.68885673 1.863938353 3.34365944"
## [4426] "Rothia_dentocariosa 7.51350652 4.565898266 3.79169972"
## [4427] "Rothia_mucilaginosa 7.60617334 7.782615112 7.20587945"
## [4428] "Cutibacterium_acnes -4.33085712 -1.300165767 -0.16119834"
## [4429] "Propionibacterium_acidifaciens -4.96203452 -0.507452653 -1.39958779"
## [4430] "Pseudopropionibacterium_propionicum 0.56770442 3.280378105 2.83270799"
## [4431] "Atopobium_deltae -4.73520478 -4.863279368 -4.70876235"
## [4432] "Atopobium_parvulum 3.66066577 4.416624332 3.84733051"
## [4433] "Atopobium_rimae 2.45920409 4.039752399 3.54247945"
## [4434] "Olsenella_profusa -2.30861114 1.620660238 2.07013221"
## [4435] "Olsenella_scatoligenes -0.07442025 1.901008676 1.76738460"
## [4436] "Olsenella_uli -2.58739178 2.923360197 2.56750303"
## [4437] "Collinsella_aerofaciens -0.13820819 1.330478657 1.06165419"
## [4438] "Collinsella_intestinalis -1.47806232 0.294894269 0.29702085"
## [4439] "Collinsella_stercoris -2.42685029 1.345665767 0.82379896"
## [4440] "Enorma_massiliensis -3.45722649 0.225369820 -0.23751759"
## [4441] "X.Collinsella._massiliensis 0.58216567 1.683405123 1.39375128"
## [4442] "Asaccharobacter_celatus -4.34074130 -4.057501421 -1.07478726"
## [4443] "Denitrobacterium_detoxificans -4.33085712 -1.534956628 -1.26648871"
## [4444] "Enterorhabdus_caecimuris -4.68513230 -4.250089378 -1.70478334"
## [4445] "Slackia_exigua -0.42075242 3.238924263 2.86520560"
## [4446] "Slackia_isoflavoniconvertens -1.32737688 0.505473053 0.69210626"
## [4447] "Rubrobacter_radiotolerans -4.35509597 -4.596202872 -3.41102537"
## [4448] "Thermoleophilum_album -1.22785730 -0.685594842 -0.02778031"
## [4449] "Porphyromonas_endodontalis -2.81869001 -1.214336071 -5.18349110"
## [4450] "Porphyromonas_somerae -3.24231601 -1.304677166 -1.45180278"
## [4451] "Prevotella_histicola 4.22596680 -2.028945611 -3.38453934"
## [4452] "Prevotella_melaninogenica 0.37612864 -2.238933957 -3.36743384"
## [4453] "Kouleothrix_aurantiaca -2.02998129 -4.973281571 -1.85765359"
## [4454] "Hydrogenibacillus_schlegelii -4.61544577 -4.437793213 -4.16095693"
## [4455] "Gemella_bergeri 1.34732765 2.738173633 2.10238988"
## [4456] "Gemella_haemolysans 5.54713927 4.102879173 3.62468173"
## [4457] "Gemella_morbillorum 2.38764404 3.818923067 3.15276730"
## [4458] "Gemella_sanguinis 6.07212783 6.286670723 5.52460949"
## [4459] "Brochothrix_campestris -3.41364744 -5.021181380 -3.19000601"
## [4460] "Staphylococcus_argenteus 4.50603974 3.525715479 1.68515662"
## [4461] "Staphylococcus_aureus 6.51300756 6.125412198 6.26150839"
## [4462] "Staphylococcus_epidermidis -4.16684120 0.531903991 -0.10118409"
## [4463] "Staphylococcus_schweitzeri 0.58094265 1.356963189 -0.61157150"
## [4464] "Abiotrophia_defectiva -0.40297752 -0.310931061 -1.34500275"
## [4465] "Abiotrophia_sp_HMSC24B09 -0.13486478 -2.303678953 -1.91160373"
## [4466] "Granulicatella_adiacens 0.96513090 2.292876928 1.72151808"
## [4467] "Granulicatella_elegans 4.75179218 3.699230185 3.27267155"
## [4468] "Enterococcus_faecalis -4.73066938 -5.076876961 -7.22432459"
## [4469] "Lactobacillus_rhamnosus -4.82742022 -4.179295172 -3.56299214"
## [4470] "Streptococcus_anginosus 3.78326460 4.034424984 3.75071131"
## [4471] "Streptococcus_australis 4.04443183 5.494113736 4.34153722"
## [4472] "Streptococcus_cristatus 1.01874881 2.200144508 3.00031348"
## [4473] "Streptococcus_gordonii 3.43557195 3.339577070 3.07690082"
## [4474] "Streptococcus_infantis 6.25432199 5.930264421 5.60682388"
## [4475] "Streptococcus_milleri -2.54168422 0.875557860 -0.51204939"
## [4476] "Streptococcus_mitis 5.76812098 4.963779623 5.77433138"
## [4477] "Streptococcus_oralis 5.75492985 5.145277968 5.42906539"
## [4478] "Streptococcus_parasanguinis 8.65126837 7.391136341 6.90100585"
## [4479] "Streptococcus_peroris 4.98649568 -1.899966311 -0.88625528"
## [4480] "Streptococcus_pneumoniae -1.99147706 -2.891322839 4.28079621"
## [4481] "Streptococcus_pseudopneumoniae -0.21870434 1.046989209 2.59102735"
## [4482] "Streptococcus_salivarius 7.92485916 6.941629942 6.31826377"
## [4483] "Streptococcus_sanguinis 6.00776692 2.881460541 3.77814493"
## [4484] "Streptococcus_sp_A12 0.25626890 3.385997177 2.50211221"
## [4485] "Streptococcus_sp_F0442 4.06639077 4.141023759 3.55561264"
## [4486] "Streptococcus_sp_HMSC034E03 -1.35035635 0.104842907 3.71811199"
## [4487] "Streptococcus_sp_HMSC067H01 -3.03710264 -0.020510728 3.59610210"
## [4488] "Streptococcus_sp_HMSC071D03 -3.76470722 -2.103725128 0.86240379"
## [4489] "Streptococcus_sp_HPH0090 1.45695897 1.082473149 1.78975938"
## [4490] "Streptococcus_sp_M334 0.93505873 -3.377308609 -2.36107158"
## [4491] "Streptococcus_vestibularis 1.18903052 2.851725086 2.19789985"
## [4492] "Eubacterium_brachy 0.38369788 3.788776048 3.47371469"
## [4493] "Eubacterium_infirmum -2.15086954 -0.046333903 0.54028595"
## [4494] "Eubacterium_nodatum -2.91417286 -0.191706734 -1.94408219"
## [4495] "Eubacterium_sulci 0.93402177 0.618916735 -0.17167537"
## [4496] "Mogibacterium_diversum 4.74227010 2.939161449 2.64673753"
## [4497] "Mogibacterium_pumilum -0.00157574 0.421526038 0.19937091"
## [4498] "Mogibacterium_timidum -0.77198761 -1.882590568 -1.47962014"
## [4499] "Lachnoanaerobaculum_saburreum 2.96966598 -0.531755083 0.92588332"
## [4500] "Oribacterium_parvum -3.66150328 -0.892125505 -1.98746934"
## [4501] "Oribacterium_sinus 4.59630983 2.636028795 0.64467334"
## [4502] "Oribacterium_sp_oral_taxon_078 -4.25994350 -3.695430306 -1.24140076"
## [4503] "Stomatobaculum_longum 2.98462032 -6.242445604 -3.27240470"
## [4504] "Peptostreptococcus_stomatis -1.92057289 2.291143348 0.08982286"
## [4505] "Bulleidia_extructa -0.56760279 1.864090467 1.42804405"
## [4506] "Solobacterium_moorei 2.92372532 3.124137673 2.87986140"
## [4507] "Limnochorda_pilosa 0.84904853 1.122309568 0.72587023"
## [4508] "Veillonella_atypica 4.05907340 -3.803041688 1.12603990"
## [4509] "Veillonella_dispar 2.89281697 -0.985380451 1.90702627"
## [4510] "Veillonella_infantium 0.43463243 -5.447622797 -0.73825771"
## [4511] "Veillonella_parvula 1.41623666 -3.147384705 0.49420923"
## [4512] "Veillonella_sp_T11011_6 1.16075519 -5.606136289 -2.40444613"
## [4513] "Parvimonas_micra 4.61978744 4.612484268 4.04147459"
## [4514] "Parvimonas_sp_oral_taxon_110 -0.22979466 -1.823411878 -2.77966147"
## [4515] "Parvimonas_sp_oral_taxon_393 0.39750661 0.388752368 0.43491081"
## [4516] "Fusobacterium_nucleatum 0.12182467 -3.203916567 0.73616841"
## [4517] "Leptotrichia_wadei -0.91333966 -6.436371041 -4.95529361"
## [4518] "Gemmata_obscuriglobus -4.33085712 -3.050545232 -0.08963435"
## [4519] "Paludisphaera_borealis -4.35768510 -1.683269656 -0.08652330"
## [4520] "Achromobacter_xylosoxidans -3.68416032 -6.863827769 -8.98715646"
## [4521] "Cupriavidus_sp 2.43228659 4.700238748 4.51512508"
## [4522] "Sutterella_parvirubra 0.34775270 -4.547438112 -0.95456197"
## [4523] "Anaerobiospirillum_thomasii -3.11532867 -4.143349472 -0.07888976"
## [4524] "Cardiobacterium_hominis -4.35048589 0.004157891 0.18951768"
## [4525] "Cardiobacterium_valvarum -4.40856794 -0.828283641 -1.52124885"
## [4526] "Alkalilimnicola_ehrlichii -0.26355495 -3.334706052 -9.33031475"
## [4527] "Escherichia_coli -3.83025031 -6.552500659 -9.16592529"
## [4528] "Thiohalorhabdus_denitrificans 1.61634824 -3.904534171 -7.38717307"
## [4529] "Pseudomonas_aeruginosa 7.88638087 3.885916857 -0.41683280"
## [4530] "Acholeplasma_oculi -3.10472570 -1.710016810 -2.24369198"
## [4531] "Candida_parapsilosis -3.60877709 2.313991472 2.17352040"
## [4532] "Nakamurella_silvestris -4.48201833 -4.499100226 -4.75763430"
## [4533] "Prevotella_jejuni -0.51286885 -7.746295807 -8.31069930"
## [4534] "Prevotella_pallens 0.43883257 -6.826433354 -8.21047943"
## [4535] "Prevotella_salivae 0.50772521 -7.399352237 -9.29670959"
## [4536] "Tannerella_sp_oral_taxon_HOT_286 -3.13548057 -3.670423091 -5.69225075"
## [4537] "Capnocytophaga_gingivalis -3.03586458 -0.906379325 -7.56595113"
## [4538] "Lactobacillus_gasseri -3.15799709 -0.109016596 -0.09199663"
## [4539] "Sharpea_azabuensis -4.34129242 -4.639818178 -3.82626979"
## [4540] "Streptococcus_mutans 0.72929277 2.338803407 3.01997160"
## [4541] "Oribacterium_asaccharolyticum 0.39991190 -4.394728387 -6.87404163"
## [4542] "Megasphaera_micronuciformis -1.76215055 -5.676202220 -6.63221170"
## [4543] "Neisseria_flavescens 3.95187205 -7.562416803 -6.62644844"
## [4544] "Neisseria_subflava 2.36837064 -6.881279110 -6.25552104"
## [4545] "Stenotrophomonas_maltophilia 0.34455690 2.641478756 0.22858595"
## [4546] "Stenotrophomonas_pavanii -3.01451785 -3.233142202 -6.96652806"
## [4547] "Stenotrophomonas_rhizophila -0.69899944 -3.948512775 -7.96351869"
## [4548] "Streptococcus_sobrinus -4.06637417 -1.354977371 -3.20508632"
## [4549] "Eggerthia_catenaformis -0.02931493 0.620555395 -5.06719472"
## [4550] "Haemophilus_parainfluenzae -0.64373993 -4.929749872 -6.60348187"
## [4551] " CFB_b_lyPMA CFB_b_host_zero CFB_b_control"
## [4552] "Actinobaculum_sp_oral_taxon_183 -2.5639377 -0.85637208 -0.52782908"
## [4553] "Actinomyces_georgiae -2.6954903 -1.99916699 -0.65938174"
## [4554] "Actinomyces_graevenitzii 2.1118476 3.54621595 0.63798007"
## [4555] "Actinomyces_hongkongensis -2.7204069 -2.28432922 -0.68429834"
## [4556] "Actinomyces_johnsonii -0.1428405 3.02774470 0.46517749"
## [4557] "Actinomyces_massiliensis -1.8803225 1.62629765 0.15578613"
## [4558] "Actinomyces_meyeri -1.1089158 0.91917589 0.07749372"
## [4559] "Actinomyces_naeslundii -2.8710092 3.07908551 -0.83490058"
## [4560] "Actinomyces_odontolyticus 4.7631133 6.36270062 2.96206799"
## [4561] "Actinomyces_oris 3.9834437 6.19304310 0.34619158"
## [4562] "Actinomyces_sp_HMSC035G02 3.4307264 5.32044933 0.84365366"
## [4563] "Actinomyces_sp_HPA0247 4.2918250 6.66653068 3.36454786"
## [4564] "Actinomyces_sp_ICM47 2.0707735 4.50691885 0.64367368"
## [4565] "Actinomyces_sp_S6_Spd3 2.0146738 3.71103072 -0.98435938"
## [4566] "Actinomyces_sp_oral_taxon_170 -2.7829029 1.41663112 -0.74679430"
## [4567] "Actinomyces_sp_oral_taxon_180 -1.6947365 2.70998613 -0.72322993"
## [4568] "Actinomyces_sp_oral_taxon_181 2.4113669 4.87937757 -0.65799650"
## [4569] "Actinomyces_sp_oral_taxon_414 -2.8517428 -2.38350291 -0.81563424"
## [4570] "Actinomyces_sp_oral_taxon_448 2.8087922 0.99479354 3.61952696"
## [4571] "Actinomyces_sp_oral_taxon_897 -0.2942691 -0.53197859 1.74183950"
## [4572] "Actinomyces_viscosus -2.0163385 -0.35820706 -0.71095594"
## [4573] "Aeriscardovia_aeriphila -0.4158728 0.57921026 -1.06530040"
## [4574] "Alloscardovia_omnicolens -2.6056854 0.62026320 -0.56957685"
## [4575] "Bifidobacterium_dentium 0.8329328 0.24387938 1.94404686"
## [4576] "Bifidobacterium_longum -1.6325139 -1.57097838 0.40359466"
## [4577] "Scardovia_wiggsiae 1.7515511 2.90781732 -0.38184978"
## [4578] "Corynebacterium_atypicum -2.8032758 -3.90314783 -0.76716721"
## [4579] "Corynebacterium_durum -3.1612847 0.51197381 -2.45983568"
## [4580] "Corynebacterium_matruchotii -0.1658919 -0.08337426 0.90296033"
## [4581] "Rothia_aeria 0.4702758 3.29478419 0.79890682"
## [4582] "Rothia_dentocariosa 4.5181743 3.91522770 -0.39967964"
## [4583] "Rothia_mucilaginosa 7.7125106 7.23087057 5.03469432"
## [4584] "Cutibacterium_acnes -2.7593385 -0.88550150 -0.72322993"
## [4585] "Propionibacterium_acidifaciens -1.8479494 -0.49151373 0.18815916"
## [4586] "Pseudopropionibacterium_propionicum 0.4167566 2.89235784 -0.53519017"
## [4587] "Atopobium_deltae -2.9319524 -5.99787017 -0.89584384"
## [4588] "Atopobium_parvulum 3.1624881 4.19131199 0.47256801"
## [4589] "Atopobium_rimae 0.4165436 3.70584980 -0.68173801"
## [4590] "Olsenella_profusa 0.3638924 1.30486535 0.85840866"
## [4591] "Olsenella_scatoligenes -0.8945503 1.68562487 -0.35865814"
## [4592] "Olsenella_uli 1.2349704 2.56069394 1.49532375"
## [4593] "Collinsella_aerofaciens -0.3288358 0.86309438 -0.72322993"
## [4594] "Collinsella_intestinalis -0.6018638 0.17004740 -0.50549024"
## [4595] "Collinsella_stercoris -1.1975109 0.73680282 -0.30215878"
## [4596] "Enorma_massiliensis -2.0795873 -0.36674343 -0.87210567"
## [4597] "X.Collinsella._massiliensis -1.5074222 1.36586734 -0.72322993"
## [4598] "Asaccharobacter_celatus -2.8644923 -2.20440542 -0.82838369"
## [4599] "Denitrobacterium_detoxificans -2.7593385 -2.17733471 -0.72322993"
## [4600] "Enterorhabdus_caecimuris -3.1203136 -3.52081868 -1.08420504"
## [4601] "Slackia_exigua -0.3070281 3.22158437 0.21571474"
## [4602] "Slackia_isoflavoniconvertens -1.6323806 0.98043486 -0.72322993"
## [4603] "Rubrobacter_radiotolerans -2.8382830 -4.68502052 -0.80217442"
## [4604] "Thermoleophilum_album -0.7841508 -1.06671478 -0.70353635"
## [4605] "Porphyromonas_endodontalis 1.6233433 2.67048287 0.55943232"
## [4606] "Porphyromonas_somerae 0.9408119 0.31144852 -1.62192453"
## [4607] "Prevotella_histicola 3.4089532 0.61923106 2.93462926"
## [4608] "Prevotella_melaninogenica 1.6558140 -0.39612969 2.93087790"
## [4609] "Kouleothrix_aurantiaca -3.3546415 -3.52971167 -1.31853296"
## [4610] "Hydrogenibacillus_schlegelii -4.0132887 -4.39830682 -1.97718015"
## [4611] "Gemella_bergeri -1.3307730 1.98396919 -0.72322993"
## [4612] "Gemella_haemolysans 4.4093224 3.50466299 -1.91835566"
## [4613] "Gemella_morbillorum 2.6042281 3.21576461 -0.72322993"
## [4614] "Gemella_sanguinis 6.0571718 5.67919622 4.15259087"
## [4615] "Brochothrix_campestris -4.1204321 -5.98381747 -2.08432350"
## [4616] "Staphylococcus_argenteus 3.6692283 3.31683957 0.23175056"
## [4617] "Staphylococcus_aureus 6.2617593 6.29930143 3.51550824"
## [4618] "Staphylococcus_epidermidis 3.1578841 0.64020643 3.59446007"
## [4619] "Staphylococcus_schweitzeri -1.7781732 -0.26985892 -1.15121992"
## [4620] "Abiotrophia_defectiva -4.7683965 -0.96552295 -2.73228796"
## [4621] "Abiotrophia_sp_HMSC24B09 -5.4785305 -1.72551797 -3.44242189"
## [4622] "Granulicatella_adiacens 0.8302508 1.66641020 -0.97786452"
## [4623] "Granulicatella_elegans 3.0932291 3.26148005 -1.29950035"
## [4624] "Enterococcus_faecalis -3.8865174 -4.84976153 -1.85040878"
## [4625] "Lactobacillus_rhamnosus -4.4605969 -3.51760790 -2.42448833"
## [4626] "Streptococcus_anginosus 1.3361589 3.79679804 -0.72322993"
## [4627] "Streptococcus_australis 3.5219525 4.37283807 -0.75643415"
## [4628] "Streptococcus_cristatus 1.8155049 2.63083446 1.88216652"
## [4629] "Streptococcus_gordonii 3.3086131 2.84891433 -0.33476185"
## [4630] "Streptococcus_infantis 6.5314129 5.58270297 0.15481149"
## [4631] "Streptococcus_milleri 3.5550542 1.36762874 2.47643651"
## [4632] "Streptococcus_mitis 7.0793386 5.00893292 4.60092410"
## [4633] "Streptococcus_oralis 5.1836551 4.81356417 1.73925261"
## [4634] "Streptococcus_parasanguinis 7.6734445 6.82697010 6.38439015"
## [4635] "Streptococcus_peroris -1.4534394 -0.61468481 -3.91988491"
## [4636] "Streptococcus_pneumoniae 0.1505850 0.21369608 0.22504513"
## [4637] "Streptococcus_pseudopneumoniae 0.8773136 2.11391850 -0.36089083"
## [4638] "Streptococcus_salivarius 5.5018040 6.24988764 4.18584186"
## [4639] "Streptococcus_sanguinis 4.2608273 2.40137270 0.14361641"
## [4640] "Streptococcus_sp_A12 1.3984456 2.98257361 -0.01422096"
## [4641] "Streptococcus_sp_F0442 3.4598337 3.78783224 -1.26150360"
## [4642] "Streptococcus_sp_HMSC034E03 2.7545031 0.40712625 1.51694254"
## [4643] "Streptococcus_sp_HMSC067H01 1.8385648 0.72779430 1.97410120"
## [4644] "Streptococcus_sp_HMSC071D03 -0.5606768 -0.99385487 -0.10246005"
## [4645] "Streptococcus_sp_HPH0090 0.3087713 0.96254126 -0.65752972"
## [4646] "Streptococcus_sp_M334 -1.0412688 -4.01765378 -3.03405071"
## [4647] "Streptococcus_vestibularis 1.9449115 1.15511208 0.75458705"
## [4648] "Eubacterium_brachy 2.5887547 2.75650350 1.12466186"
## [4649] "Eubacterium_infirmum -2.7593385 -0.80395584 -0.72322993"
## [4650] "Eubacterium_nodatum -0.6751246 -0.79610308 1.36098403"
## [4651] "Eubacterium_sulci -1.7663699 0.39822121 -0.02904221"
## [4652] "Mogibacterium_diversum -2.4433072 2.65610026 -0.47146275"
## [4653] "Mogibacterium_pumilum -2.7127086 -0.16561061 -0.67660003"
## [4654] "Mogibacterium_timidum -2.6077422 -2.29921839 -0.57163363"
## [4655] "Lachnoanaerobaculum_saburreum 0.2314700 -1.96027915 -1.98262413"
## [4656] "Oribacterium_parvum 2.0135385 -0.88822681 2.68218049"
## [4657] "Oribacterium_sinus 2.7853424 1.88819414 0.12371946"
## [4658] "Oribacterium_sp_oral_taxon_078 -3.1659179 -1.80767624 -1.12980933"
## [4659] "Stomatobaculum_longum -0.2145999 -7.26668455 -1.51891452"
## [4660] "Peptostreptococcus_stomatis -0.9558963 1.37953074 -0.07593640"
## [4661] "Bulleidia_extructa 1.0478853 1.65921660 0.31252525"
## [4662] "Solobacterium_moorei 1.3322727 2.58153224 -0.77814232"
## [4663] "Limnochorda_pilosa -2.2893721 0.54288593 -1.30055187"
## [4664] "Veillonella_atypica 1.5971734 -2.86037185 3.47381708"
## [4665] "Veillonella_dispar 3.3807736 -0.28883029 3.31963044"
## [4666] "Veillonella_infantium 0.2635124 -5.09154716 -0.79022456"
## [4667] "Veillonella_parvula -0.1863151 -1.68796604 -0.45557611"
## [4668] "Veillonella_sp_T11011_6 -1.6239372 -5.48887809 -0.84589673"
## [4669] "Parvimonas_micra 3.0876870 2.84991498 0.10622199"
## [4670] "Parvimonas_sp_oral_taxon_110 -1.5752645 -1.17770018 -0.67722783"
## [4671] "Parvimonas_sp_oral_taxon_393 -0.6185621 -0.01356441 0.09460136"
## [4672] "Fusobacterium_nucleatum -1.8383045 -3.23364556 -0.72322993"
## [4673] "Leptotrichia_wadei -0.8302135 -7.77229297 -1.49697304"
## [4674] "Gemmata_obscuriglobus -2.7593385 -2.87258480 -0.72322993"
## [4675] "Paludisphaera_borealis -1.6182899 -1.03324550 -0.75995693"
## [4676] "Achromobacter_xylosoxidans -3.5598345 -7.93114359 -1.89170348"
## [4677] "Cupriavidus_sp 2.4665827 4.55225860 -0.72322993"
## [4678] "Sutterella_parvirubra 0.3577388 -1.69836689 -0.72322993"
## [4679] "Anaerobiospirillum_thomasii -2.7593385 -1.24548171 -0.72322993"
## [4680] "Cardiobacterium_hominis 2.7960709 0.44570282 3.23204248"
## [4681] "Cardiobacterium_valvarum 1.9709869 -0.37116809 2.62795897"
## [4682] "Alkalilimnicola_ehrlichii -2.5358447 -4.73683634 -0.75600196"
## [4683] "Escherichia_coli -3.7696761 -7.73334372 -1.88742651"
## [4684] "Thiohalorhabdus_denitrificans -2.4022272 -4.65670021 -1.85965177"
## [4685] "Pseudomonas_aeruginosa 7.1635432 2.60696578 8.34741387"
## [4686] "Acholeplasma_oculi -3.6364444 -3.18944931 -1.60033585"
## [4687] "Candida_parapsilosis 5.0395062 1.08909005 5.12489585"
## [4688] "Nakamurella_silvestris -2.8588824 -3.77005457 -0.82277382"
## [4689] "Prevotella_jejuni -3.8649366 -4.27080074 -2.80689780"
## [4690] "Prevotella_pallens -3.6175875 -5.55883631 -1.65069415"
## [4691] "Prevotella_salivae -4.8593748 -5.08099483 -2.90419371"
## [4692] "Tannerella_sp_oral_taxon_HOT_286 0.6918008 -1.55615252 -0.18757732"
## [4693] "Capnocytophaga_gingivalis -2.1349883 -0.70524386 -1.81332959"
## [4694] "Lactobacillus_gasseri 2.5775266 -1.40521164 3.14939742"
## [4695] "Sharpea_azabuensis -2.6555527 -3.69733033 -0.61944414"
## [4696] "Streptococcus_mutans 2.8572001 1.48540292 1.56624804"
## [4697] "Oribacterium_asaccharolyticum -4.3303899 -4.74083153 -2.29428136"
## [4698] "Megasphaera_micronuciformis -3.5316893 -6.02522860 -1.34604273"
## [4699] "Neisseria_flavescens -1.1508600 -5.67725084 -4.12911480"
## [4700] "Neisseria_subflava -2.6057801 -6.63590628 -1.98173272"
## [4701] "Stenotrophomonas_maltophilia 4.7458079 2.97313203 4.80462064"
## [4702] "Stenotrophomonas_pavanii -3.3651822 -2.70660473 0.05624174"
## [4703] "Stenotrophomonas_rhizophila -3.2982547 -5.20308002 -1.22000446"
## [4704] "Streptococcus_sobrinus -2.0229396 -2.66880737 0.01316899"
## [4705] "Eggerthia_catenaformis 1.4049921 -0.22277925 2.15972468"
## [4706] "Haemophilus_parainfluenzae -2.9553386 -5.88721166 0.16040249"
## [4707] " CFB_b_benzonase CFB_a_qiaamp CFB_a_molysis"
## [4708] "Actinobaculum_sp_oral_taxon_183 -0.927575017 -4.14035662 -4.27392473"
## [4709] "Actinomyces_georgiae -4.267008937 -2.32284900 0.06654319"
## [4710] "Actinomyces_graevenitzii 2.799165137 7.86694371 8.11214651"
## [4711] "Actinomyces_hongkongensis -4.291925533 -2.55810364 -0.26060907"
## [4712] "Actinomyces_johnsonii 1.973362923 2.97919425 2.19588536"
## [4713] "Actinomyces_massiliensis 0.625637928 0.48355783 2.26970454"
## [4714] "Actinomyces_meyeri -0.995800161 -0.87504651 0.28133182"
## [4715] "Actinomyces_naeslundii -1.202301758 2.95458797 2.33619196"
## [4716] "Actinomyces_odontolyticus 4.876179592 7.73804758 7.15860157"
## [4717] "Actinomyces_oris 5.929009546 6.66769400 6.62057841"
## [4718] "Actinomyces_sp_HMSC035G02 3.720810396 7.10145656 6.50687825"
## [4719] "Actinomyces_sp_HPA0247 5.387473810 7.78825228 7.04732527"
## [4720] "Actinomyces_sp_ICM47 3.225084891 5.21905066 4.84038280"
## [4721] "Actinomyces_sp_S6_Spd3 2.751794253 5.48066565 4.94251106"
## [4722] "Actinomyces_sp_oral_taxon_170 -3.138434855 0.77488199 0.48197840"
## [4723] "Actinomyces_sp_oral_taxon_180 1.563540863 3.61578992 2.75319482"
## [4724] "Actinomyces_sp_oral_taxon_181 3.574986170 5.19195739 4.79333834"
## [4725] "Actinomyces_sp_oral_taxon_414 -4.423261436 -7.00697435 -3.36900244"
## [4726] "Actinomyces_sp_oral_taxon_448 1.729876939 -6.31815604 -6.89166886"
## [4727] "Actinomyces_sp_oral_taxon_897 -0.108618629 -4.06379417 -4.29906357"
## [4728] "Actinomyces_viscosus -0.334982596 1.80141157 0.98472953"
## [4729] "Aeriscardovia_aeriphila 0.066176887 1.57502941 0.91585422"
## [4730] "Alloscardovia_omnicolens 0.194544904 -3.89982093 -4.53391162"
## [4731] "Bifidobacterium_dentium -0.281031768 -5.98832591 -4.44980002"
## [4732] "Bifidobacterium_longum -0.334082666 -5.32816596 -4.34981641"
## [4733] "Scardovia_wiggsiae 1.336503082 3.98590521 3.11899032"
## [4734] "Corynebacterium_atypicum -4.374794399 -4.62311103 -4.40701807"
## [4735] "Corynebacterium_durum -3.073690481 4.40017575 3.47926682"
## [4736] "Corynebacterium_matruchotii -2.704666866 -6.67467710 -2.78847234"
## [4737] "Rothia_aeria -1.022119456 -1.41443625 0.06528483"
## [4738] "Rothia_dentocariosa 4.005738731 5.31904457 4.54484603"
## [4739] "Rothia_mucilaginosa 6.898230105 7.39210658 6.81537092"
## [4740] "Cutibacterium_acnes -4.330857120 -1.30016577 -0.16119834"
## [4741] "Propionibacterium_acidifaciens -2.481198462 -2.33134266 -3.22347780"
## [4742] "Pseudopropionibacterium_propionicum 1.615829415 4.06399783 3.61632772"
## [4743] "Atopobium_deltae -4.503471037 -6.02042925 -5.86591224"
## [4744] "Atopobium_parvulum 3.129748728 6.67378077 6.10448695"
## [4745] "Atopobium_rimae 2.514168510 4.16880086 3.67152792"
## [4746] "Olsenella_profusa -0.459195841 -3.95693222 -3.50746025"
## [4747] "Olsenella_scatoligenes 0.331865849 1.11900344 0.98537936"
## [4748] "Olsenella_uli -0.651938972 -3.84980258 -4.20565974"
## [4749] "Collinsella_aerofaciens -0.138208194 1.33047866 1.06165419"
## [4750] "Collinsella_intestinalis -1.125262263 0.18162883 0.18375541"
## [4751] "Collinsella_stercoris -1.651330218 0.82257533 0.30070853"
## [4752] "Enorma_massiliensis -3.518928654 0.41619607 -0.04669134"
## [4753] "X.Collinsella._massiliensis 0.582165667 1.68340512 1.39375128"
## [4754] "Asaccharobacter_celatus -4.436010881 -3.96488989 -0.98217573"
## [4755] "Denitrobacterium_detoxificans -4.330857120 -1.53495663 -1.26648871"
## [4756] "Enterorhabdus_caecimuris -4.691832233 -3.81529391 -1.26998787"
## [4757] "Slackia_exigua 0.433051275 0.46513953 0.09142087"
## [4758] "Slackia_isoflavoniconvertens -1.327376881 0.50547305 0.69210626"
## [4759] "Rubrobacter_radiotolerans -4.409801609 -4.88021519 -3.69503768"
## [4760] "Thermoleophilum_album -1.059000848 -0.68764379 -0.02982926"
## [4761] "Porphyromonas_endodontalis 0.002407937 -5.48114042 -9.45029544"
## [4762] "Porphyromonas_somerae -0.135137880 0.97840824 0.83128263"
## [4763] "Prevotella_histicola 2.264717000 -7.00634610 -8.36193983"
## [4764] "Prevotella_melaninogenica 2.374369775 2.60581407 1.47731418"
## [4765] "Kouleothrix_aurantiaca -2.632202493 -3.88080510 -0.76517712"
## [4766] "Hydrogenibacillus_schlegelii -5.584807343 -2.93535537 -2.65851909"
## [4767] "Gemella_bergeri 1.347327648 2.73817363 2.10238988"
## [4768] "Gemella_haemolysans 4.331135927 4.92381429 4.44561685"
## [4769] "Gemella_morbillorum 2.387644043 3.81892307 3.15276730"
## [4770] "Gemella_sanguinis 6.096035091 6.49467521 5.73261398"
## [4771] "Brochothrix_campestris -5.691950695 -3.16946923 -1.33829386"
## [4772] "Staphylococcus_argenteus 2.825284258 4.35134746 2.51078860"
## [4773] "Staphylococcus_aureus 5.532104884 7.83337356 7.96946975"
## [4774] "Staphylococcus_epidermidis 1.636956891 -6.42083872 -7.05392680"
## [4775] "Staphylococcus_schweitzeri -0.729718091 2.05725911 0.08872442"
## [4776] "Abiotrophia_defectiva -3.747562630 2.41849291 1.38442122"
## [4777] "Abiotrophia_sp_HMSC24B09 -4.437728205 1.37134051 1.76341573"
## [4778] "Granulicatella_adiacens 1.031062806 2.61237420 2.04101535"
## [4779] "Granulicatella_elegans 3.374663062 4.31618253 3.88962389"
## [4780] "Enterococcus_faecalis -5.458035975 -3.56939689 -5.71684452"
## [4781] "Lactobacillus_rhamnosus -6.032115522 -1.97075060 -1.35444756"
## [4782] "Streptococcus_anginosus 3.783264600 4.03442498 3.75071131"
## [4783] "Streptococcus_australis 4.417823622 4.87265006 3.72007355"
## [4784] "Streptococcus_cristatus 1.623059303 -5.08292981 -4.28276084"
## [4785] "Streptococcus_gordonii 2.465451938 4.23856431 3.97588806"
## [4786] "Streptococcus_infantis 6.203437509 5.97737616 5.65393562"
## [4787] "Streptococcus_milleri 2.099576416 -6.06908634 -7.45669359"
## [4788] "Streptococcus_mitis 5.907430360 5.01544174 5.82599350"
## [4789] "Streptococcus_oralis 5.754929851 5.14527797 5.42906539"
## [4790] "Streptococcus_parasanguinis 7.180808422 8.48735215 7.99722166"
## [4791] "Streptococcus_peroris -0.833372565 1.89601799 2.90972902"
## [4792] "Streptococcus_pneumoniae 0.235523422 -4.73593720 2.43618185"
## [4793] "Streptococcus_pseudopneumoniae 0.901529806 0.23061214 1.77465029"
## [4794] "Streptococcus_salivarius 6.265875870 8.40232376 7.77895759"
## [4795] "Streptococcus_sanguinis 3.415790258 4.97487122 5.87155561"
## [4796] "Streptococcus_sp_A12 1.213052715 4.03568046 3.15179549"
## [4797] "Streptococcus_sp_F0442 2.905469144 5.05273057 4.46731945"
## [4798] "Streptococcus_sp_HMSC034E03 2.369024646 -0.07689354 3.53637555"
## [4799] "Streptococcus_sp_HMSC067H01 1.358846338 -2.22781415 1.38879867"
## [4800] "Streptococcus_sp_HMSC071D03 -2.315191466 -2.47638931 0.48973961"
## [4801] "Streptococcus_sp_HPH0090 1.377650447 1.88827428 2.59556052"
## [4802] "Streptococcus_sp_M334 -3.855215011 -5.60431047 -4.58807344"
## [4803] "Streptococcus_vestibularis -0.488732402 2.57904884 1.92522360"
## [4804] "Eubacterium_brachy 2.360645320 0.07845093 -0.23661042"
## [4805] "Eubacterium_infirmum -2.150869538 -0.04633390 0.54028595"
## [4806] "Eubacterium_nodatum 0.950481005 -5.13779514 -6.89017059"
## [4807] "Eubacterium_sulci 0.805100345 5.91400808 5.12341597"
## [4808] "Mogibacterium_diversum 2.203189293 5.03047501 4.73805109"
## [4809] "Mogibacterium_pumilum -0.622806175 0.67909959 0.45694446"
## [4810] "Mogibacterium_timidum -2.492150987 -5.05823882 -4.65526840"
## [4811] "Lachnoanaerobaculum_saburreum 1.063604911 1.91480893 3.37244733"
## [4812] "Oribacterium_parvum 0.900877657 -6.60508147 -7.70042530"
## [4813] "Oribacterium_sinus 2.293072638 2.97825852 0.98690306"
## [4814] "Oribacterium_sp_oral_taxon_078 -4.737436524 -3.42207380 -0.96804425"
## [4815] "Stomatobaculum_longum 0.237055601 0.32919717 3.29923808"
## [4816] "Peptostreptococcus_stomatis -1.094373446 -0.75545669 -2.95677717"
## [4817] "Bulleidia_extructa 1.014825489 -2.12764337 -2.56368978"
## [4818] "Solobacterium_moorei 2.851791815 3.25048949 3.00621322"
## [4819] "Limnochorda_pilosa 0.173680164 1.64954284 1.25310351"
## [4820] "Veillonella_atypica 3.161355701 -0.83220833 4.09687325"
## [4821] "Veillonella_dispar 2.896312478 0.61671977 3.50912649"
## [4822] "Veillonella_infantium -1.080620762 -1.21290988 3.49645521"
## [4823] "Veillonella_parvula 1.628733627 -2.31377654 1.32781739"
## [4824] "Veillonella_sp_T11011_6 -1.146727423 -1.55514241 1.64654776"
## [4825] "Parvimonas_micra 3.787003606 2.40303778 1.83202810"
## [4826] "Parvimonas_sp_oral_taxon_110 -2.111370034 -3.28470600 -4.24095559"
## [4827] "Parvimonas_sp_oral_taxon_393 0.093156934 -1.82822239 -1.78206394"
## [4828] "Fusobacterium_nucleatum 0.121824671 -3.20391657 0.73616841"
## [4829] "Leptotrichia_wadei -3.333068739 -6.33891856 -4.85784113"
## [4830] "Gemmata_obscuriglobus -4.330857120 -3.05054523 -0.08963435"
## [4831] "Paludisphaera_borealis -4.367584119 -1.65621341 -0.05946706"
## [4832] "Achromobacter_xylosoxidans -5.055282461 -6.73214517 -8.85547386"
## [4833] "Cupriavidus_sp 2.432286592 4.70023875 4.51512508"
## [4834] "Sutterella_parvirubra 0.347752703 -4.54743811 -0.95456197"
## [4835] "Anaerobiospirillum_thomasii -3.115328671 -4.14334947 -0.07888976"
## [4836] "Cardiobacterium_hominis 1.141775994 -6.01828781 -5.83292802"
## [4837] "Cardiobacterium_valvarum 0.156366299 -6.52078532 -7.21375053"
## [4838] "Alkalilimnicola_ehrlichii -0.866272177 -2.31469598 -8.31030468"
## [4839] "Escherichia_coli -5.203789326 4.92860766 2.31518303"
## [4840] "Thiohalorhabdus_denitrificans -1.720090103 -2.73020576 -6.21284466"
## [4841] "Pseudomonas_aeruginosa 5.914955742 4.40950767 0.10675801"
## [4842] "Acholeplasma_oculi -4.225432068 -0.97800943 -1.51168460"
## [4843] "Candida_parapsilosis 3.892153605 -6.34632585 -6.48679692"
## [4844] "Nakamurella_silvestris -4.430401014 -4.21578797 -4.47432204"
## [4845] "Prevotella_jejuni -2.751106064 -3.94960524 -4.51400873"
## [4846] "Prevotella_pallens -0.979804071 1.03101765 -0.35302843"
## [4847] "Prevotella_salivae -3.093798191 0.22136563 -1.67599173"
## [4848] "Tannerella_sp_oral_taxon_HOT_286 -0.986630672 -1.39179621 -3.41362387"
## [4849] "Capnocytophaga_gingivalis -3.994937079 2.79253157 -3.86704023"
## [4850] "Lactobacillus_gasseri 0.997496016 -6.37973383 -6.36271387"
## [4851] "Sharpea_azabuensis -4.227071336 -4.89067389 -4.07712551"
## [4852] "Streptococcus_mutans 2.368143631 2.96829822 3.64946641"
## [4853] "Oribacterium_asaccharolyticum -3.316510427 -2.23503108 -4.71434432"
## [4854] "Megasphaera_micronuciformis -2.604378959 2.17488226 1.21887278"
## [4855] "Neisseria_flavescens -1.244013768 -2.86597120 -1.93000284"
## [4856] "Neisseria_subflava -0.819059160 -2.11261736 -1.48685929"
## [4857] "Stenotrophomonas_maltophilia 5.570190984 1.62667168 -0.78622112"
## [4858] "Stenotrophomonas_pavanii -1.975880861 -2.12277395 -5.85615981"
## [4859] "Stenotrophomonas_rhizophila -1.512497289 -1.69500106 -5.71000698"
## [4860] "Streptococcus_sobrinus -2.061588874 0.44625032 -1.40385863"
## [4861] "Eggerthia_catenaformis 1.411665570 -4.61646663 -10.30421674"
## [4862] "Haemophilus_parainfluenzae -0.819004259 -3.87135217 -5.54508416"
## [4863] " CFB_a_lyPMA CFB_a_host_zero CFB_a_control"
## [4864] "Actinobaculum_sp_oral_taxon_183 -6.49931109 -4.79174551 -4.463202507"
## [4865] "Actinomyces_georgiae -2.65417045 -1.95784712 -0.618061871"
## [4866] "Actinomyces_graevenitzii 6.18858811 7.62295642 4.714720553"
## [4867] "Actinomyces_hongkongensis -2.65672239 -2.22064469 -0.620613810"
## [4868] "Actinomyces_johnsonii -0.82152228 2.34906290 -0.213504313"
## [4869] "Actinomyces_massiliensis -2.38437477 1.12224533 -0.348266192"
## [4870] "Actinomyces_meyeri -1.59008685 0.43800485 -0.403677321"
## [4871] "Actinomyces_naeslundii -3.32955149 2.62054318 -1.293442912"
## [4872] "Actinomyces_odontolyticus 5.59922981 7.19881709 3.798184461"
## [4873] "Actinomyces_oris 3.98344369 6.19304310 0.346191580"
## [4874] "Actinomyces_sp_HMSC035G02 4.80122626 6.69094915 2.214153484"
## [4875] "Actinomyces_sp_HPA0247 4.86573773 7.24044339 3.938460571"
## [4876] "Actinomyces_sp_ICM47 2.31795429 4.75409968 0.890854516"
## [4877] "Actinomyces_sp_S6_Spd3 3.22709357 4.92345051 0.228060411"
## [4878] "Actinomyces_sp_oral_taxon_170 -3.66260199 0.53693201 -1.626493410"
## [4879] "Actinomyces_sp_oral_taxon_180 -1.69473651 2.70998613 -0.723229926"
## [4880] "Actinomyces_sp_oral_taxon_181 2.38982247 4.85783310 -0.679540968"
## [4881] "Actinomyces_sp_oral_taxon_414 -4.91229517 -4.44405526 -2.876186594"
## [4882] "Actinomyces_sp_oral_taxon_448 -4.17655784 -5.99055651 -3.365823094"
## [4883] "Actinomyces_sp_oral_taxon_897 -4.52448569 -4.76219519 -2.488377108"
## [4884] "Actinomyces_viscosus -2.58465156 -0.92652010 -1.279268985"
## [4885] "Aeriscardovia_aeriphila 0.01219683 1.00727986 -0.637230793"
## [4886] "Alloscardovia_omnicolens -7.56700565 -4.34105702 -5.530897069"
## [4887] "Bifidobacterium_dentium -4.99015542 -5.57920889 -3.879041404"
## [4888] "Bifidobacterium_longum -6.07368974 -6.01215420 -4.037581164"
## [4889] "Scardovia_wiggsiae 1.87430063 3.03056685 -0.259100250"
## [4890] "Corynebacterium_atypicum -2.71098702 -3.81085906 -0.674878436"
## [4891] "Corynebacterium_durum 0.30868842 3.98194689 1.010137401"
## [4892] "Corynebacterium_matruchotii -4.45104429 -4.36852668 -3.382192095"
## [4893] "Rothia_aeria -2.80809879 0.01640958 -2.479467786"
## [4894] "Rothia_dentocariosa 5.27132064 4.66837401 0.353466673"
## [4895] "Rothia_mucilaginosa 7.32200202 6.84036204 4.644185790"
## [4896] "Cutibacterium_acnes -2.75933851 -0.88550150 -0.723229926"
## [4897] "Propionibacterium_acidifaciens -3.67183944 -2.31540374 -1.635730856"
## [4898] "Pseudopropionibacterium_propionicum 1.20037634 3.67597757 0.248429559"
## [4899] "Atopobium_deltae -4.08910231 -7.15502005 -2.052993730"
## [4900] "Atopobium_parvulum 5.41964455 6.44846844 2.729724457"
## [4901] "Atopobium_rimae 0.54559208 3.83489826 -0.552689543"
## [4902] "Olsenella_profusa -5.21370007 -4.27272711 -4.719183798"
## [4903] "Olsenella_scatoligenes -1.67655553 0.90361963 -1.140663379"
## [4904] "Olsenella_uli -5.53819239 -4.21246884 -5.277839020"
## [4905] "Collinsella_aerofaciens -0.32883578 0.86309438 -0.723229926"
## [4906] "Collinsella_intestinalis -0.71512927 0.05678196 -0.618755677"
## [4907] "Collinsella_stercoris -1.72060130 0.21371238 -0.825249216"
## [4908] "Enorma_massiliensis -1.88876105 -0.17591718 -0.681279418"
## [4909] "X.Collinsella._massiliensis -1.50742221 1.36586734 -0.723229926"
## [4910] "Asaccharobacter_celatus -2.77188073 -2.11179389 -0.735772154"
## [4911] "Denitrobacterium_detoxificans -2.75933851 -2.17733471 -0.723229926"
## [4912] "Enterorhabdus_caecimuris -2.68551815 -3.08602322 -0.649409571"
## [4913] "Slackia_exigua -3.08081288 0.44779964 -2.558069993"
## [4914] "Slackia_isoflavoniconvertens -1.63238059 0.98043486 -0.723229926"
## [4915] "Rubrobacter_radiotolerans -3.12229531 -4.96903283 -1.086186732"
## [4916] "Thermoleophilum_album -0.78619974 -1.06876373 -0.705585301"
## [4917] "Porphyromonas_endodontalis -2.64346107 -1.59632148 -3.707372029"
## [4918] "Porphyromonas_somerae 3.22389732 2.59453393 0.661160883"
## [4919] "Prevotella_histicola -1.56844725 -4.35816942 -2.042771229"
## [4920] "Prevotella_melaninogenica 6.50056203 4.44861833 7.775625920"
## [4921] "Kouleothrix_aurantiaca -2.26216507 -2.43723520 -0.226056486"
## [4922] "Hydrogenibacillus_schlegelii -2.51085089 -2.89586898 -0.474742309"
## [4923] "Gemella_bergeri -1.33077303 1.98396919 -0.723229926"
## [4924] "Gemella_haemolysans 5.23025754 4.32559811 -1.097420536"
## [4925] "Gemella_morbillorum 2.60422810 3.21576461 -0.723229926"
## [4926] "Gemella_sanguinis 6.26517628 5.88720071 4.360595364"
## [4927] "Brochothrix_campestris -2.26871993 -4.13210532 -0.232611355"
## [4928] "Staphylococcus_argenteus 4.49486029 4.14247155 1.057382544"
## [4929] "Staphylococcus_aureus 7.96972064 8.00726279 5.223469599"
## [4930] "Staphylococcus_epidermidis -3.79485860 -6.31253628 -3.358282642"
## [4931] "Staphylococcus_schweitzeri -1.07787727 0.43043700 -0.450924004"
## [4932] "Abiotrophia_defectiva -2.03897257 1.76390102 -0.002863988"
## [4933] "Abiotrophia_sp_HMSC24B09 -1.80351101 1.94950149 0.232597573"
## [4934] "Granulicatella_adiacens 1.14974808 1.98590747 -0.658367252"
## [4935] "Granulicatella_elegans 3.71018149 3.87843239 -0.682548012"
## [4936] "Enterococcus_faecalis -2.37903729 -3.34228146 -0.342928710"
## [4937] "Lactobacillus_rhamnosus -2.25205233 -1.30906332 -0.215943753"
## [4938] "Streptococcus_anginosus 1.33615893 3.79679804 -0.723229926"
## [4939] "Streptococcus_australis 2.90048883 3.75137440 -1.377897820"
## [4940] "Streptococcus_cristatus -5.46756946 -4.65223986 -5.400907805"
## [4941] "Streptococcus_gordonii 4.20760034 3.74790156 0.564225385"
## [4942] "Streptococcus_infantis 6.57852465 5.62981471 0.201923226"
## [4943] "Streptococcus_milleri -3.38958997 -5.57701546 -4.468207695"
## [4944] "Streptococcus_mitis 7.13100074 5.06059503 4.652586215"
## [4945] "Streptococcus_oralis 5.18365508 4.81356417 1.739252610"
## [4946] "Streptococcus_parasanguinis 8.76966034 7.92318591 7.480605966"
## [4947] "Streptococcus_peroris 2.34254489 3.18129950 -0.123900603"
## [4948] "Streptococcus_pneumoniae -1.69402934 -1.63091828 -1.619569232"
## [4949] "Streptococcus_pseudopneumoniae 0.06093654 1.29754143 -1.177267893"
## [4950] "Streptococcus_salivarius 6.96249777 7.71058145 5.646535678"
## [4951] "Streptococcus_sanguinis 6.35423800 4.49478338 2.237027088"
## [4952] "Streptococcus_sp_A12 2.04812887 3.63225689 0.635462325"
## [4953] "Streptococcus_sp_F0442 4.37154050 4.69953905 -0.349796789"
## [4954] "Streptococcus_sp_HMSC034E03 2.57276670 0.22538980 1.335206095"
## [4955] "Streptococcus_sp_HMSC067H01 -0.36873866 -1.47950913 -0.233202224"
## [4956] "Streptococcus_sp_HMSC071D03 -0.93334099 -1.36651905 -0.475124240"
## [4957] "Streptococcus_sp_HPH0090 1.11457239 1.76834240 0.148271414"
## [4958] "Streptococcus_sp_M334 -3.26827068 -6.24465564 -5.261052569"
## [4959] "Streptococcus_vestibularis 1.67223523 0.88243583 0.481910800"
## [4960] "Eubacterium_brachy -1.12157041 -0.95382162 -2.585663261"
## [4961] "Eubacterium_infirmum -2.75933851 -0.80395584 -0.723229926"
## [4962] "Eubacterium_nodatum -5.62121295 -5.74219148 -3.585104373"
## [4963] "Eubacterium_sulci 3.52872147 5.69331255 5.266049132"
## [4964] "Mogibacterium_diversum -0.35199369 4.74741382 1.619850807"
## [4965] "Mogibacterium_pumilum -2.45513506 0.09196294 -0.419026481"
## [4966] "Mogibacterium_timidum -5.78339047 -5.47486665 -3.747281891"
## [4967] "Lachnoanaerobaculum_saburreum 2.67803401 0.48628486 0.463939879"
## [4968] "Oribacterium_parvum -3.69941749 -6.60118277 -3.030775470"
## [4969] "Oribacterium_sinus 3.12757207 2.23042386 0.465949179"
## [4970] "Oribacterium_sp_oral_taxon_078 -2.89256140 -1.53431973 -0.856452823"
## [4971] "Stomatobaculum_longum 6.35704291 -0.69504177 5.052728260"
## [4972] "Peptostreptococcus_stomatis -4.00249631 -1.66706929 -3.122536432"
## [4973] "Bulleidia_extructa -2.94384851 -2.33251723 -3.679208581"
## [4974] "Solobacterium_moorei 1.45862452 2.70788405 -0.651790506"
## [4975] "Limnochorda_pilosa -1.76213879 1.07011921 -0.773318598"
## [4976] "Veillonella_atypica 4.56800679 0.11046150 6.444650437"
## [4977] "Veillonella_dispar 4.98287383 1.31326993 4.921730654"
## [4978] "Veillonella_infantium 4.49822536 -0.85683424 3.444488355"
## [4979] "Veillonella_parvula 0.64729309 -0.85435787 0.378032056"
## [4980] "Veillonella_sp_T11011_6 2.42705668 -1.43788421 3.205097158"
## [4981] "Parvimonas_micra 0.87824048 0.64046849 -2.103224506"
## [4982] "Parvimonas_sp_oral_taxon_110 -3.03655864 -2.63899430 -2.138521954"
## [4983] "Parvimonas_sp_oral_taxon_393 -2.83553686 -2.23053916 -2.122373396"
## [4984] "Fusobacterium_nucleatum -1.83830447 -3.23364556 -0.723229926"
## [4985] "Leptotrichia_wadei -0.73276102 -7.67484049 -1.399520558"
## [4986] "Gemmata_obscuriglobus -2.75933851 -2.87258480 -0.723229926"
## [4987] "Paludisphaera_borealis -1.59123367 -1.00618926 -0.732900681"
## [4988] "Achromobacter_xylosoxidans -3.42815193 -7.79946099 -1.760020873"
## [4989] "Cupriavidus_sp 2.46658273 4.55225860 -0.723229926"
## [4990] "Sutterella_parvirubra 0.35773876 -1.69836689 -0.723229926"
## [4991] "Anaerobiospirillum_thomasii -2.75933851 -1.24548171 -0.723229926"
## [4992] "Cardiobacterium_hominis -3.22637484 -5.57674288 -2.790403217"
## [4993] "Cardiobacterium_valvarum -3.72151475 -6.06366976 -3.064542708"
## [4994] "Alkalilimnicola_ehrlichii -1.51583463 -3.71682627 0.264008112"
## [4995] "Escherichia_coli 7.71143223 3.74776460 9.593681809"
## [4996] "Thiohalorhabdus_denitrificans -1.22789882 -3.48237180 -0.685323356"
## [4997] "Pseudomonas_aeruginosa 7.68713397 3.13055660 8.871004685"
## [4998] "Acholeplasma_oculi -2.90443705 -2.45744193 -0.868328468"
## [4999] "Candida_parapsilosis -3.62081116 -7.57122727 -3.535421471"
## [5000] "Nakamurella_silvestris -2.57557014 -3.48674231 -0.539461560"
## [5001] "Prevotella_jejuni -0.06824598 -0.47411017 0.989792770"
## [5002] "Prevotella_pallens 4.23986346 2.29861470 6.206756856"
## [5003] "Prevotella_salivae 2.76134310 2.53972304 4.716524153"
## [5004] "Tannerella_sp_oral_taxon_HOT_286 2.97042769 0.72247436 2.091049563"
## [5005] "Capnocytophaga_gingivalis 1.56392261 2.99366703 1.885581311"
## [5006] "Lactobacillus_gasseri -3.69319068 -7.67592888 -3.121319816"
## [5007] "Sharpea_azabuensis -2.90640844 -3.94818604 -0.870299857"
## [5008] "Streptococcus_mutans 3.48669490 2.11489773 2.195742847"
## [5009] "Oribacterium_asaccharolyticum -2.17069263 -2.58113422 -0.134584049"
## [5010] "Megasphaera_micronuciformis 4.31939513 1.82585588 6.505041745"
## [5011] "Neisseria_flavescens 3.54558563 -0.98080523 0.567330810"
## [5012] "Neisseria_subflava 2.16288160 -1.86724453 2.786929029"
## [5013] "Stenotrophomonas_maltophilia 3.73100078 1.95832496 3.789813567"
## [5014] "Stenotrophomonas_pavanii -2.25481400 -1.59623648 1.166609991"
## [5015] "Stenotrophomonas_rhizophila -1.04474300 -2.94956830 1.033507262"
## [5016] "Streptococcus_sobrinus -0.22171189 -0.86757968 1.814396686"
## [5017] "Eggerthia_catenaformis -3.83202993 -5.45980128 -3.077297345"
## [5018] "Haemophilus_parainfluenzae -1.89694092 -4.82881396 1.218800201"
## [5019] " CFB_a_benzonase"
## [5020] "Actinobaculum_sp_oral_taxon_183 -4.86294844"
## [5021] "Actinomyces_georgiae -4.22568906"
## [5022] "Actinomyces_graevenitzii 6.87590562"
## [5023] "Actinomyces_hongkongensis -4.22824100"
## [5024] "Actinomyces_johnsonii 1.29468112"
## [5025] "Actinomyces_massiliensis 0.12158561"
## [5026] "Actinomyces_meyeri -1.47697120"
## [5027] "Actinomyces_naeslundii -1.66084409"
## [5028] "Actinomyces_odontolyticus 5.71229606"
## [5029] "Actinomyces_oris 5.92900955"
## [5030] "Actinomyces_sp_HMSC035G02 5.09131022"
## [5031] "Actinomyces_sp_HPA0247 5.96138652"
## [5032] "Actinomyces_sp_ICM47 3.47226572"
## [5033] "Actinomyces_sp_S6_Spd3 3.96421404"
## [5034] "Actinomyces_sp_oral_taxon_170 -4.01813396"
## [5035] "Actinomyces_sp_oral_taxon_180 1.56354086"
## [5036] "Actinomyces_sp_oral_taxon_181 3.55344170"
## [5037] "Actinomyces_sp_oral_taxon_414 -6.48381379"
## [5038] "Actinomyces_sp_oral_taxon_448 -5.25547311"
## [5039] "Actinomyces_sp_oral_taxon_897 -4.33883523"
## [5040] "Actinomyces_viscosus -0.90329564"
## [5041] "Aeriscardovia_aeriphila 0.49424649"
## [5042] "Alloscardovia_omnicolens -4.76677532"
## [5043] "Bifidobacterium_dentium -6.10412003"
## [5044] "Bifidobacterium_longum -4.77525849"
## [5045] "Scardovia_wiggsiae 1.45925261"
## [5046] "Corynebacterium_atypicum -4.28250563"
## [5047] "Corynebacterium_durum 0.39628260"
## [5048] "Corynebacterium_matruchotii -6.98981929"
## [5049] "Rothia_aeria -4.30049406"
## [5050] "Rothia_dentocariosa 4.75888504"
## [5051] "Rothia_mucilaginosa 6.50772158"
## [5052] "Cutibacterium_acnes -4.33085712"
## [5053] "Propionibacterium_acidifaciens -4.30508847"
## [5054] "Pseudopropionibacterium_propionicum 2.39944914"
## [5055] "Atopobium_deltae -5.66062092"
## [5056] "Atopobium_parvulum 5.38690517"
## [5057] "Atopobium_rimae 2.64321697"
## [5058] "Olsenella_profusa -6.03678830"
## [5059] "Olsenella_scatoligenes -0.45013939"
## [5060] "Olsenella_uli -7.42510174"
## [5061] "Collinsella_aerofaciens -0.13820819"
## [5062] "Collinsella_intestinalis -1.23852770"
## [5063] "Collinsella_stercoris -2.17442065"
## [5064] "Enorma_massiliensis -3.32810240"
## [5065] "X.Collinsella._massiliensis 0.58216567"
## [5066] "Asaccharobacter_celatus -4.34339935"
## [5067] "Denitrobacterium_detoxificans -4.33085712"
## [5068] "Enterorhabdus_caecimuris -4.25703676"
## [5069] "Slackia_exigua -2.34073345"
## [5070] "Slackia_isoflavoniconvertens -1.32737688"
## [5071] "Rubrobacter_radiotolerans -4.69381393"
## [5072] "Thermoleophilum_album -1.06104980"
## [5073] "Porphyromonas_endodontalis -4.26439641"
## [5074] "Porphyromonas_somerae 2.14794753"
## [5075] "Prevotella_histicola -2.71268349"
## [5076] "Prevotella_melaninogenica 7.21911780"
## [5077] "Kouleothrix_aurantiaca -1.53972602"
## [5078] "Hydrogenibacillus_schlegelii -4.08236950"
## [5079] "Gemella_bergeri 1.34732765"
## [5080] "Gemella_haemolysans 5.15207105"
## [5081] "Gemella_morbillorum 2.38764404"
## [5082] "Gemella_sanguinis 6.30403958"
## [5083] "Brochothrix_campestris -3.84023855"
## [5084] "Staphylococcus_argenteus 3.65091624"
## [5085] "Staphylococcus_aureus 7.24006624"
## [5086] "Staphylococcus_epidermidis -5.31578582"
## [5087] "Staphylococcus_schweitzeri -0.02942217"
## [5088] "Abiotrophia_defectiva -1.01813866"
## [5089] "Abiotrophia_sp_HMSC24B09 -0.76270875"
## [5090] "Granulicatella_adiacens 1.35056008"
## [5091] "Granulicatella_elegans 3.99161540"
## [5092] "Enterococcus_faecalis -3.95055590"
## [5093] "Lactobacillus_rhamnosus -3.82357095"
## [5094] "Streptococcus_anginosus 3.78326460"
## [5095] "Streptococcus_australis 3.79635995"
## [5096] "Streptococcus_cristatus -5.66001502"
## [5097] "Streptococcus_gordonii 3.36443917"
## [5098] "Streptococcus_infantis 6.25054925"
## [5099] "Streptococcus_milleri -4.84506779"
## [5100] "Streptococcus_mitis 5.95909247"
## [5101] "Streptococcus_oralis 5.75492985"
## [5102] "Streptococcus_parasanguinis 8.27702424"
## [5103] "Streptococcus_peroris 2.96261174"
## [5104] "Streptococcus_pneumoniae -1.60909094"
## [5105] "Streptococcus_pseudopneumoniae 0.08515274"
## [5106] "Streptococcus_salivarius 7.72656969"
## [5107] "Streptococcus_sanguinis 5.50920094"
## [5108] "Streptococcus_sp_A12 1.86273600"
## [5109] "Streptococcus_sp_F0442 3.81717595"
## [5110] "Streptococcus_sp_HMSC034E03 2.18728820"
## [5111] "Streptococcus_sp_HMSC067H01 -0.84845708"
## [5112] "Streptococcus_sp_HMSC071D03 -2.68785565"
## [5113] "Streptococcus_sp_HPH0090 2.18345158"
## [5114] "Streptococcus_sp_M334 -6.08221687"
## [5115] "Streptococcus_vestibularis -0.76140865"
## [5116] "Eubacterium_brachy -1.34967980"
## [5117] "Eubacterium_infirmum -2.15086954"
## [5118] "Eubacterium_nodatum -3.99560740"
## [5119] "Eubacterium_sulci 6.10019169"
## [5120] "Mogibacterium_diversum 4.29450285"
## [5121] "Mogibacterium_pumilum -0.36523263"
## [5122] "Mogibacterium_timidum -5.66779924"
## [5123] "Lachnoanaerobaculum_saburreum 3.51016892"
## [5124] "Oribacterium_parvum -4.81207831"
## [5125] "Oribacterium_sinus 2.63530236"
## [5126] "Oribacterium_sp_oral_taxon_078 -4.46408002"
## [5127] "Stomatobaculum_longum 6.80869838"
## [5128] "Peptostreptococcus_stomatis -4.14097348"
## [5129] "Bulleidia_extructa -2.97690834"
## [5130] "Solobacterium_moorei 2.97814363"
## [5131] "Limnochorda_pilosa 0.70091344"
## [5132] "Veillonella_atypica 6.13218906"
## [5133] "Veillonella_dispar 4.49841270"
## [5134] "Veillonella_infantium 3.15409215"
## [5135] "Veillonella_parvula 2.46234179"
## [5136] "Veillonella_sp_T11011_6 2.90426646"
## [5137] "Parvimonas_micra 1.57755711"
## [5138] "Parvimonas_sp_oral_taxon_110 -3.57266416"
## [5139] "Parvimonas_sp_oral_taxon_393 -2.12381782"
## [5140] "Fusobacterium_nucleatum 0.12182467"
## [5141] "Leptotrichia_wadei -3.23561626"
## [5142] "Gemmata_obscuriglobus -4.33085712"
## [5143] "Paludisphaera_borealis -4.34052787"
## [5144] "Achromobacter_xylosoxidans -4.92359986"
## [5145] "Cupriavidus_sp 2.43228659"
## [5146] "Sutterella_parvirubra 0.34775270"
## [5147] "Anaerobiospirillum_thomasii -3.11532867"
## [5148] "Cardiobacterium_hominis -4.88066970"
## [5149] "Cardiobacterium_valvarum -5.53613538"
## [5150] "Alkalilimnicola_ehrlichii 0.15373790"
## [5151] "Escherichia_coli 6.27731900"
## [5152] "Thiohalorhabdus_denitrificans -0.54576169"
## [5153] "Pseudomonas_aeruginosa 6.43854655"
## [5154] "Acholeplasma_oculi -3.49342468"
## [5155] "Candida_parapsilosis -4.76816371"
## [5156] "Nakamurella_silvestris -4.14708875"
## [5157] "Prevotella_jejuni 1.04558451"
## [5158] "Prevotella_pallens 6.87764693"
## [5159] "Prevotella_salivae 4.52691967"
## [5160] "Tannerella_sp_oral_taxon_HOT_286 1.29199621"
## [5161] "Capnocytophaga_gingivalis -0.29602618"
## [5162] "Lactobacillus_gasseri -5.27322122"
## [5163] "Sharpea_azabuensis -4.47792705"
## [5164] "Streptococcus_mutans 2.99763844"
## [5165] "Oribacterium_asaccharolyticum -1.15681312"
## [5166] "Megasphaera_micronuciformis 5.24670552"
## [5167] "Neisseria_flavescens 3.45243184"
## [5168] "Neisseria_subflava 3.94960259"
## [5169] "Stenotrophomonas_maltophilia 4.55538391"
## [5170] "Stenotrophomonas_pavanii -0.86551261"
## [5171] "Stenotrophomonas_rhizophila 0.74101443"
## [5172] "Streptococcus_sobrinus -0.26036118"
## [5173] "Eggerthia_catenaformis -3.82535646"
## [5174] "Haemophilus_parainfluenzae 0.23939345"
## [5175] ""
## [5176] "$ranef"
## [5177] " CFB_a CFB_b CFB_c"
## [5178] "Actinobaculum_sp_oral_taxon_183 -3.739973e+00 1.954008e-01 2.539337e+00"
## [5179] "Actinomyces_georgiae 1.051681e-01 6.384818e-02 -1.669963e-01"
## [5180] "Actinomyces_graevenitzii 2.332612e+00 -1.744128e+00 2.444296e+00"
## [5181] "Actinomyces_hongkongensis 1.026161e-01 3.893159e-02 -1.366184e-01"
## [5182] "Actinomyces_johnsonii 5.097256e-01 1.188407e+00 -4.396199e+00"
## [5183] "Actinomyces_massiliensis 3.749637e-01 8.790161e-01 -1.009575e+00"
## [5184] "Actinomyces_meyeri 3.195526e-01 8.007236e-01 -8.903536e-01"
## [5185] "Actinomyces_naeslundii -5.702130e-01 -1.116707e-01 -4.166805e-01"
## [5186] "Actinomyces_odontolyticus 1.006875e+00 1.707585e-01 -2.904766e-01"
## [5187] "Actinomyces_oris 4.679080e-19 -3.458998e-19 -1.124530e-19"
## [5188] "Actinomyces_sp_HMSC035G02 1.529627e+00 1.591269e-01 -3.653498e-02"
## [5189] "Actinomyces_sp_HPA0247 2.291195e+00 1.717282e+00 -1.416653e+00"
## [5190] "Actinomyces_sp_ICM47 3.177690e-01 7.058818e-02 -2.667612e-01"
## [5191] "Actinomyces_sp_S6_Spd3 9.512903e-01 -2.611294e-01 2.255274e+00"
## [5192] "Actinomyces_sp_oral_taxon_170 -9.032635e-01 -2.356437e-02 -2.613223e-01"
## [5193] "Actinomyces_sp_oral_taxon_180 2.996669e-22 2.609205e-22 -8.168490e-22"
## [5194] "Actinomyces_sp_oral_taxon_181 4.368896e-02 6.523343e-02 2.387290e+00"
## [5195] "Actinomyces_sp_oral_taxon_414 -2.152957e+00 -9.240432e-02 1.232225e+00"
## [5196] "Actinomyces_sp_oral_taxon_448 -2.642593e+00 4.342757e+00 -1.510335e+00"
## [5197] "Actinomyces_sp_oral_taxon_897 -1.765147e+00 2.465069e+00 -1.540410e+00"
## [5198] "Actinomyces_viscosus -1.468909e+00 -9.005957e-01 3.445577e-01"
## [5199] "Aeriscardovia_aeriphila 8.599913e-02 -3.420705e-01 9.877983e-02"
## [5200] "Alloscardovia_omnicolens -4.807667e+00 1.536531e-01 2.693932e+00"
## [5201] "Bifidobacterium_dentium -3.155811e+00 2.667277e+00 7.978594e-01"
## [5202] "Bifidobacterium_longum -3.314351e+00 1.126825e+00 -1.342949e+00"
## [5203] "Scardovia_wiggsiae 4.641297e-01 3.413802e-01 1.002347e+00"
## [5204] "Corynebacterium_atypicum 4.835149e-02 -4.393728e-02 -5.691441e-02"
## [5205] "Corynebacterium_durum 1.733367e+00 -1.736606e+00 -1.122509e+00"
## [5206] "Corynebacterium_matruchotii -2.658962e+00 1.626190e+00 6.165069e-01"
## [5207] "Rothia_aeria -1.756238e+00 1.522137e+00 -1.446005e-01"
## [5208] "Rothia_dentocariosa -1.029001e+00 -1.782148e+00 1.725620e+00"
## [5209] "Rothia_mucilaginosa -5.451473e-01 -1.546388e-01 5.533044e-01"
## [5210] "Cutibacterium_acnes 0.000000e+00 0.000000e+00 0.000000e+00"
## [5211] "Propionibacterium_acidifaciens -9.125009e-01 9.113891e-01 -1.569447e+00"
## [5212] "Pseudopropionibacterium_propionicum 9.716595e-01 1.880398e-01 -8.600852e-01"
## [5213] "Atopobium_deltae -1.329764e+00 -1.726139e-01 -4.043477e-01"
## [5214] "Atopobium_parvulum 1.973442e+00 -2.837144e-01 2.472027e-01"
## [5215] "Atopobium_rimae 1.705404e-01 4.149192e-02 -1.347251e-02"
## [5216] "Olsenella_profusa -3.995954e+00 1.581639e+00 -2.677767e-01"
## [5217] "Olsenella_scatoligenes -4.174335e-01 3.645718e-01 -4.171432e-02"
## [5218] "Olsenella_uli -4.554609e+00 2.218554e+00 2.831009e-01"
## [5219] "Collinsella_aerofaciens 0.000000e+00 0.000000e+00 0.000000e+00"
## [5220] "Collinsella_intestinalis 1.044742e-01 2.177397e-01 -1.350604e-01"
## [5221] "Collinsella_stercoris -1.020193e-01 4.210711e-01 -3.544489e-01"
## [5222] "Enorma_massiliensis 4.195051e-02 -1.488757e-01 -8.717358e-02"
## [5223] "X.Collinsella._massiliensis 0.000000e+00 0.000000e+00 0.000000e+00"
## [5224] "Asaccharobacter_celatus -1.254223e-02 -1.051538e-01 -9.884183e-03"
## [5225] "Denitrobacterium_detoxificans 0.000000e+00 0.000000e+00 0.000000e+00"
## [5226] "Enterorhabdus_caecimuris 7.382036e-02 -3.609751e-01 -3.542752e-01"
## [5227] "Slackia_exigua -1.834840e+00 9.389447e-01 8.514097e-02"
## [5228] "Slackia_isoflavoniconvertens 0.000000e+00 0.000000e+00 0.000000e+00"
## [5229] "Rubrobacter_radiotolerans -3.629568e-01 -7.894449e-02 -2.423885e-02"
## [5230] "Thermoleophilum_album 1.764463e-02 1.969358e-02 -1.491629e-01"
## [5231] "Porphyromonas_endodontalis -2.984142e+00 1.282662e+00 -1.538436e+00"
## [5232] "Porphyromonas_somerae 1.384391e+00 -8.986946e-01 -4.005873e+00"
## [5233] "Prevotella_histicola -4.052706e+00 9.246943e-01 2.885944e+00"
## [5234] "Prevotella_melaninogenica 3.905004e+00 -9.397441e-01 -2.937985e+00"
## [5235] "Kouleothrix_aurantiaca 4.971734e-01 -5.953030e-01 6.918173e-03"
## [5236] "Hydrogenibacillus_schlegelii 2.484876e-01 -1.253950e+00 -2.845886e-01"
## [5237] "Gemella_bergeri 0.000000e+00 0.000000e+00 0.000000e+00"
## [5238] "Gemella_haemolysans -3.741906e-01 -1.195126e+00 2.087762e-02"
## [5239] "Gemella_morbillorum 0.000000e+00 0.000000e+00 0.000000e+00"
## [5240] "Gemella_sanguinis -5.487864e-02 -2.628831e-01 -2.867904e-01"
## [5241] "Brochothrix_campestris 4.906186e-01 -1.361094e+00 9.172097e-01"
## [5242] "Staphylococcus_argenteus 3.927617e-01 -4.328703e-01 1.247885e+00"
## [5243] "Staphylococcus_aureus 1.433618e+00 -2.743438e-01 7.065588e-01"
## [5244] "Staphylococcus_epidermidis -2.635053e+00 4.317690e+00 -1.486108e+00"
## [5245] "Staphylococcus_schweitzeri 2.723059e-01 -4.279900e-01 8.826707e-01"
## [5246] "Abiotrophia_defectiva 7.203659e-01 -2.009058e+00 1.335527e+00"
## [5247] "Abiotrophia_sp_HMSC24B09 9.558275e-01 -2.719192e+00 1.583671e+00"
## [5248] "Granulicatella_adiacens 6.486267e-02 -2.546346e-01 -3.205665e-01"
## [5249] "Granulicatella_elegans 4.068191e-02 -5.762704e-01 8.008587e-01"
## [5250] "Enterococcus_faecalis 3.803012e-01 -1.127179e+00 -3.998123e-01"
## [5251] "Lactobacillus_rhamnosus 5.072862e-01 -1.701258e+00 -4.965631e-01"
## [5252] "Streptococcus_anginosus 0.000000e+00 0.000000e+00 0.000000e+00"
## [5253] "Streptococcus_australis -6.546679e-01 -3.320422e-02 -4.065960e-01"
## [5254] "Streptococcus_cristatus -4.677678e+00 2.605396e+00 2.001086e+00"
## [5255] "Streptococcus_gordonii -3.441454e-02 -9.334018e-01 3.671823e-02"
## [5256] "Streptococcus_infantis 1.585898e-04 -4.695315e-02 3.931333e-03"
## [5257] "Streptococcus_milleri -3.744978e+00 3.199666e+00 -1.441594e+00"
## [5258] "Streptococcus_mitis 4.477833e-02 -6.883781e-03 -1.461932e-01"
## [5259] "Streptococcus_oralis 0.000000e+00 0.000000e+00 0.000000e+00"
## [5260] "Streptococcus_parasanguinis 6.064184e-01 -4.897974e-01 9.806625e-01"
## [5261] "Streptococcus_peroris 5.993293e-01 -3.196655e+00 2.623213e+00"
## [5262] "Streptococcus_pneumoniae -8.963393e-01 9.482751e-01 -1.278725e+00"
## [5263] "Streptococcus_pseudopneumoniae -4.540380e-01 3.623391e-01 -7.578950e-01"
## [5264] "Streptococcus_salivarius 1.541481e+00 8.078676e-02 1.739770e+00"
## [5265] "Streptococcus_sanguinis 1.622337e+00 -4.710735e-01 2.120903e+00"
## [5266] "Streptococcus_sp_A12 1.358692e+00 7.090090e-01 -2.477748e-01"
## [5267] "Streptococcus_sp_F0442 3.734331e-01 -5.382737e-01 6.226480e-01"
## [5268] "Streptococcus_sp_HMSC034E03 2.058436e+00 2.240172e+00 -1.479209e+00"
## [5269] "Streptococcus_sp_HMSC067H01 4.900277e-01 2.697331e+00 -1.698618e+00"
## [5270] "Streptococcus_sp_HMSC071D03 2.481057e-01 6.207699e-01 -8.287459e-01"
## [5271] "Streptococcus_sp_HPH0090 8.715013e-01 6.570021e-02 1.450087e-01"
## [5272] "Streptococcus_sp_M334 -4.537823e+00 -2.310821e+00 2.479453e+00"
## [5273] "Streptococcus_vestibularis 1.357192e-01 4.083955e-01 2.086158e+00"
## [5274] "Eubacterium_brachy -1.862433e+00 1.847892e+00 -1.290557e-01"
## [5275] "Eubacterium_infirmum 0.000000e+00 0.000000e+00 0.000000e+00"
## [5276] "Eubacterium_nodatum -2.861874e+00 2.084214e+00 -1.780440e+00"
## [5277] "Eubacterium_sulci 4.607928e+00 -6.871632e-01 -5.582418e-01"
## [5278] "Mogibacterium_diversum 1.155046e+00 -9.362671e-01 1.602814e+00"
## [5279] "Mogibacterium_pumilum 3.042034e-01 4.662990e-02 6.678603e-01"
## [5280] "Mogibacterium_timidum -3.024052e+00 1.515963e-01 1.871760e+00"
## [5281] "Lachnoanaerobaculum_saburreum 1.187170e+00 -1.259394e+00 6.466669e-01"
## [5282] "Oribacterium_parvum -2.307546e+00 3.405410e+00 -1.156971e+00"
## [5283] "Oribacterium_sinus 1.189179e+00 8.469494e-01 3.150187e+00"
## [5284] "Oribacterium_sp_oral_taxon_078 -1.332229e-01 -4.065794e-01 7.091362e-02"
## [5285] "Stomatobaculum_longum 4.348662e+00 -2.222981e+00 5.245835e-01"
## [5286] "Peptostreptococcus_stomatis -2.399307e+00 6.472935e-01 -1.789059e-01"
## [5287] "Bulleidia_extructa -2.955979e+00 1.035755e+00 -5.466731e-01"
## [5288] "Solobacterium_moorei 7.143942e-02 -5.491239e-02 1.702111e-02"
## [5289] "Limnochorda_pilosa -5.008867e-02 -5.773219e-01 9.804642e-02"
## [5290] "Veillonella_atypica 2.929922e+00 -4.091125e-02 8.568065e-01"
## [5291] "Veillonella_dispar 1.910165e+00 3.080652e-01 3.045697e-01"
## [5292] "Veillonella_infantium 2.760665e+00 -1.474048e+00 4.120483e-02"
## [5293] "Veillonella_parvula 1.187310e-01 -7.148772e-01 -9.273741e-01"
## [5294] "Veillonella_sp_T11011_6 2.584524e+00 -1.466469e+00 8.410132e-01"
## [5295] "Parvimonas_micra -1.379995e+00 8.294519e-01 1.662236e+00"
## [5296] "Parvimonas_sp_oral_taxon_110 -1.415292e+00 4.600210e-02 1.927577e+00"
## [5297] "Parvimonas_sp_oral_taxon_393 -1.399143e+00 8.178313e-01 1.122181e+00"
## [5298] "Fusobacterium_nucleatum 0.000000e+00 0.000000e+00 0.000000e+00"
## [5299] "Leptotrichia_wadei -6.762906e-01 -7.737431e-01 1.645986e+00"
## [5300] "Gemmata_obscuriglobus 0.000000e+00 0.000000e+00 0.000000e+00"
## [5301] "Paludisphaera_borealis -9.670754e-03 -3.672700e-02 -2.682798e-02"
## [5302] "Achromobacter_xylosoxidans -2.898955e+00 -3.030637e+00 -1.659515e+00"
## [5303] "Cupriavidus_sp 0.000000e+00 0.000000e+00 0.000000e+00"
## [5304] "Sutterella_parvirubra 0.000000e+00 0.000000e+00 0.000000e+00"
## [5305] "Anaerobiospirillum_thomasii 0.000000e+00 0.000000e+00 0.000000e+00"
## [5306] "Cardiobacterium_hominis -2.067173e+00 3.955272e+00 -1.536989e+00"
## [5307] "Cardiobacterium_valvarum -2.341313e+00 3.351189e+00 -1.213745e+00"
## [5308] "Alkalilimnicola_ehrlichii -3.601554e-01 -1.380165e+00 -7.774482e-01"
## [5309] "Escherichia_coli 8.216172e+00 -3.264936e+00 -1.891397e+00"
## [5310] "Thiohalorhabdus_denitrificans -1.154294e+00 -2.328623e+00 1.007815e+00"
## [5311] "Pseudomonas_aeruginosa -9.065961e-01 -1.430187e+00 5.412382e-01"
## [5312] "Acholeplasma_oculi -1.450985e-01 -8.771059e-01 2.436004e-01"
## [5313] "Candida_parapsilosis -2.812192e+00 5.848126e+00 -1.652805e+00"
## [5314] "Nakamurella_silvestris 1.837684e-01 -9.954389e-02 -1.511612e-01"
## [5315] "Prevotella_jejuni 1.713023e+00 -2.083668e+00 1.545693e-01"
## [5316] "Prevotella_pallens 5.282756e+00 -2.574695e+00 -1.156059e+00"
## [5317] "Prevotella_salivae 4.239967e+00 -3.380751e+00 2.207723e-01"
## [5318] "Tannerella_sp_oral_taxon_HOT_286 2.814279e+00 5.356526e-01 -1.613197e+00"
## [5319] "Capnocytophaga_gingivalis 2.608811e+00 -1.090100e+00 -1.310272e-01"
## [5320] "Lactobacillus_gasseri -2.398090e+00 3.872627e+00 -2.828658e-01"
## [5321] "Sharpea_azabuensis -1.470699e-01 1.037858e-01 -1.043530e-02"
## [5322] "Streptococcus_mutans 2.918973e+00 2.289478e+00 6.506271e-01"
## [5323] "Oribacterium_asaccharolyticum 5.886459e-01 -1.571051e+00 2.145371e+00"
## [5324] "Megasphaera_micronuciformis 5.815662e+00 -2.035422e+00 -1.193194e+00"
## [5325] "Neisseria_flavescens 1.290561e+00 -3.405885e+00 1.790001e+00"
## [5326] "Neisseria_subflava 2.135526e+00 -2.633136e+00 5.542942e-01"
## [5327] "Stenotrophomonas_maltophilia 1.009663e+00 2.024470e+00 -3.201164e+00"
## [5328] "Stenotrophomonas_pavanii 5.045245e-01 -6.058437e-01 -1.644481e+00"
## [5329] "Stenotrophomonas_rhizophila 3.794309e-01 -1.874081e+00 -1.060583e+00"
## [5330] "Streptococcus_sobrinus 2.537627e+00 7.363989e-01 -1.268386e+00"
## [5331] "Eggerthia_catenaformis -2.354067e+00 2.882955e+00 1.441974e+00"
## [5332] "Haemophilus_parainfluenzae 8.623976e-01 -1.960001e-01 -2.073579e-02"
## [5333] " CFB_d CFB_e"
## [5334] "Actinobaculum_sp_oral_taxon_183 -1.553455e+00 2.558690e+00"
## [5335] "Actinomyces_georgiae 6.508641e-02 -6.710632e-02"
## [5336] "Actinomyces_graevenitzii -2.662418e+00 -3.703620e-01"
## [5337] "Actinomyces_hongkongensis 6.655673e-02 -7.148608e-02"
## [5338] "Actinomyces_johnsonii 1.434788e+00 1.263278e+00"
## [5339] "Actinomyces_massiliensis -7.268612e-01 4.824560e-01"
## [5340] "Actinomyces_meyeri -3.151720e-02 -1.984054e-01"
## [5341] "Actinomyces_naeslundii 6.044188e-01 4.941453e-01"
## [5342] "Actinomyces_odontolyticus -2.333247e+00 1.446090e+00"
## [5343] "Actinomyces_oris -1.592297e-19 1.496746e-19"
## [5344] "Actinomyces_sp_HMSC035G02 -1.217330e+00 -4.348885e-01"
## [5345] "Actinomyces_sp_HPA0247 -2.104610e+00 -4.872132e-01"
## [5346] "Actinomyces_sp_ICM47 -3.020290e-01 1.804330e-01"
## [5347] "Actinomyces_sp_S6_Spd3 -1.467806e+00 -1.477629e+00"
## [5348] "Actinomyces_sp_oral_taxon_170 1.737827e+00 -5.496768e-01"
## [5349] "Actinomyces_sp_oral_taxon_180 5.547254e-22 -2.984639e-22"
## [5350] "Actinomyces_sp_oral_taxon_181 -1.193545e+00 -1.302667e+00"
## [5351] "Actinomyces_sp_oral_taxon_414 7.354713e-01 2.776645e-01"
## [5352] "Actinomyces_sp_oral_taxon_448 -2.540935e-01 6.426461e-02"
## [5353] "Actinomyces_sp_oral_taxon_897 -4.951124e-01 1.335600e+00"
## [5354] "Actinomyces_viscosus -8.008315e-01 2.825778e+00"
## [5355] "Aeriscardovia_aeriphila -8.038017e-02 2.376717e-01"
## [5356] "Alloscardovia_omnicolens 1.079558e+00 8.805239e-01"
## [5357] "Bifidobacterium_dentium 2.819244e-01 -5.912491e-01"
## [5358] "Bifidobacterium_longum -1.339783e-01 3.664454e+00"
## [5359] "Scardovia_wiggsiae -2.833413e-01 -1.524516e+00"
## [5360] "Corynebacterium_atypicum 3.170100e-02 2.079919e-02"
## [5361] "Corynebacterium_durum 6.280629e-01 4.976844e-01"
## [5362] "Corynebacterium_matruchotii 4.605200e-01 -4.425499e-02"
## [5363] "Rothia_aeria 1.005443e+00 -6.267412e-01"
## [5364] "Rothia_dentocariosa 5.731125e-02 1.028218e+00"
## [5365] "Rothia_mucilaginosa -2.770586e-01 4.235403e-01"
## [5366] "Cutibacterium_acnes 0.000000e+00 0.000000e+00"
## [5367] "Propionibacterium_acidifaciens 8.188263e-01 7.517325e-01"
## [5368] "Pseudopropionibacterium_propionicum 1.005423e-01 -4.001563e-01"
## [5369] "Atopobium_deltae 1.313648e+00 5.930770e-01"
## [5370] "Atopobium_parvulum -1.489159e+00 -4.477718e-01"
## [5371] "Atopobium_rimae -5.271264e-02 -1.458472e-01"
## [5372] "Olsenella_profusa 1.709776e+00 9.723155e-01"
## [5373] "Olsenella_scatoligenes 3.780562e-01 -2.834802e-01"
## [5374] "Olsenella_uli 2.120681e+00 -6.772629e-02"
## [5375] "Collinsella_aerofaciens 0.000000e+00 0.000000e+00"
## [5376] "Collinsella_intestinalis 1.839207e-01 -3.710742e-01"
## [5377] "Collinsella_stercoris 4.321609e-01 -3.967638e-01"
## [5378] "Enorma_massiliensis 3.542414e-01 -1.601426e-01"
## [5379] "X.Collinsella._massiliensis 0.000000e+00 0.000000e+00"
## [5380] "Asaccharobacter_celatus 7.858216e-02 4.899801e-02"
## [5381] "Denitrobacterium_detoxificans 0.000000e+00 0.000000e+00"
## [5382] "Enterorhabdus_caecimuris 3.856114e-01 2.558185e-01"
## [5383] "Slackia_exigua 6.144410e-01 1.963134e-01"
## [5384] "Slackia_isoflavoniconvertens 0.000000e+00 0.000000e+00"
## [5385] "Rubrobacter_radiotolerans 3.721580e-01 9.398216e-02"
## [5386] "Thermoleophilum_album -4.569927e-01 5.688174e-01"
## [5387] "Porphyromonas_endodontalis -1.990007e-01 3.438916e+00"
## [5388] "Porphyromonas_somerae 1.268179e+00 2.251998e+00"
## [5389] "Prevotella_histicola -2.420721e+00 2.662789e+00"
## [5390] "Prevotella_melaninogenica -2.765801e+00 2.738526e+00"
## [5391] "Kouleothrix_aurantiaca 1.334489e-01 -4.223744e-02"
## [5392] "Hydrogenibacillus_schlegelii 4.649202e-01 8.251311e-01"
## [5393] "Gemella_bergeri 0.000000e+00 0.000000e+00"
## [5394] "Gemella_haemolysans 1.286723e+00 2.617158e-01"
## [5395] "Gemella_morbillorum 0.000000e+00 0.000000e+00"
## [5396] "Gemella_sanguinis 6.401305e-01 -3.557832e-02"
## [5397] "Brochothrix_campestris 7.986508e-01 -8.453855e-01"
## [5398] "Staphylococcus_argenteus 5.440864e+00 -6.648641e+00"
## [5399] "Staphylococcus_aureus 5.796449e+00 -7.662282e+00"
## [5400] "Staphylococcus_epidermidis -2.113534e-01 1.482425e-02"
## [5401] "Staphylococcus_schweitzeri 3.508681e+00 -4.235667e+00"
## [5402] "Abiotrophia_defectiva 1.070432e+00 -1.117267e+00"
## [5403] "Abiotrophia_sp_HMSC24B09 1.176264e+00 -9.965707e-01"
## [5404] "Granulicatella_adiacens -3.468536e-01 8.571920e-01"
## [5405] "Granulicatella_elegans -4.209914e-01 1.557212e-01"
## [5406] "Enterococcus_faecalis 3.296958e-01 8.169941e-01"
## [5407] "Lactobacillus_rhamnosus 5.197479e-01 1.170787e+00"
## [5408] "Streptococcus_anginosus 0.000000e+00 0.000000e+00"
## [5409] "Streptococcus_australis 6.000262e-01 4.944419e-01"
## [5410] "Streptococcus_cristatus 1.545500e+00 -1.474304e+00"
## [5411] "Streptococcus_gordonii -2.010579e+00 2.941677e+00"
## [5412] "Streptococcus_infantis 2.430688e-02 1.855634e-02"
## [5413] "Streptococcus_milleri -1.308281e+00 3.295186e+00"
## [5414] "Streptococcus_mitis -3.832807e-01 4.915793e-01"
## [5415] "Streptococcus_oralis 0.000000e+00 0.000000e+00"
## [5416] "Streptococcus_parasanguinis -6.363880e-01 -4.608955e-01"
## [5417] "Streptococcus_peroris 6.281116e-01 -6.539992e-01"
## [5418] "Streptococcus_pneumoniae -2.955511e-01 1.522341e+00"
## [5419] "Streptococcus_pseudopneumoniae -4.879479e-01 1.337542e+00"
## [5420] "Streptococcus_salivarius -1.837664e+00 -1.524373e+00"
## [5421] "Streptococcus_sanguinis -4.399348e+00 1.127181e+00"
## [5422] "Streptococcus_sp_A12 -2.961841e-01 -1.523742e+00"
## [5423] "Streptococcus_sp_F0442 -1.271585e+00 8.137778e-01"
## [5424] "Streptococcus_sp_HMSC034E03 -9.008103e-01 -1.918590e+00"
## [5425] "Streptococcus_sp_HMSC067H01 -3.721420e-01 -1.116599e+00"
## [5426] "Streptococcus_sp_HMSC071D03 4.919642e-01 -5.320938e-01"
## [5427] "Streptococcus_sp_HPH0090 -1.233524e+00 1.513134e-01"
## [5428] "Streptococcus_sp_M334 1.399458e+00 2.969732e+00"
## [5429] "Streptococcus_vestibularis -1.207551e+00 -1.422722e+00"
## [5430] "Eubacterium_brachy -2.258628e+00 2.402225e+00"
## [5431] "Eubacterium_infirmum 0.000000e+00 0.000000e+00"
## [5432] "Eubacterium_nodatum -5.805877e-01 3.138688e+00"
## [5433] "Eubacterium_sulci -3.391700e+00 2.917728e-02"
## [5434] "Mogibacterium_diversum -1.313911e+00 -5.076820e-01"
## [5435] "Mogibacterium_pumilum -7.242005e-01 -2.944932e-01"
## [5436] "Mogibacterium_timidum 3.064150e-01 6.942810e-01"
## [5437] "Lachnoanaerobaculum_saburreum -1.698354e+00 1.123911e+00"
## [5438] "Oribacterium_parvum 1.195931e-01 -6.048746e-02"
## [5439] "Oribacterium_sinus -3.490409e+00 -1.695906e+00"
## [5440] "Oribacterium_sp_oral_taxon_078 7.893021e-02 3.899585e-01"
## [5441] "Stomatobaculum_longum -9.237827e-01 -1.726481e+00"
## [5442] "Peptostreptococcus_stomatis 1.439625e+00 4.912936e-01"
## [5443] "Bulleidia_extructa 1.178860e-01 2.349011e+00"
## [5444] "Solobacterium_moorei -5.833496e-02 2.478682e-02"
## [5445] "Limnochorda_pilosa 5.031813e-02 4.790461e-01"
## [5446] "Veillonella_atypica -1.964892e+00 -1.780926e+00"
## [5447] "Veillonella_dispar -2.700240e+00 1.774393e-01"
## [5448] "Veillonella_infantium -8.332752e-01 -4.945459e-01"
## [5449] "Veillonella_parvula -1.350274e+00 2.873795e+00"
## [5450] "Veillonella_sp_T11011_6 -1.214586e+00 -7.444818e-01"
## [5451] "Parvimonas_micra -2.303799e+00 1.192106e+00"
## [5452] "Parvimonas_sp_oral_taxon_110 -8.684508e-01 3.101633e-01"
## [5453] "Parvimonas_sp_oral_taxon_393 -1.021283e+00 4.804144e-01"
## [5454] "Fusobacterium_nucleatum 0.000000e+00 0.000000e+00"
## [5455] "Leptotrichia_wadei 2.448162e-01 -4.407685e-01"
## [5456] "Gemmata_obscuriglobus 0.000000e+00 0.000000e+00"
## [5457] "Paludisphaera_borealis -1.245098e-02 8.567671e-02"
## [5458] "Achromobacter_xylosoxidans -2.843564e-01 7.873464e+00"
## [5459] "Cupriavidus_sp 0.000000e+00 0.000000e+00"
## [5460] "Sutterella_parvirubra 0.000000e+00 0.000000e+00"
## [5461] "Anaerobiospirillum_thomasii 0.000000e+00 0.000000e+00"
## [5462] "Cardiobacterium_hominis -2.861417e-01 -6.496792e-02"
## [5463] "Cardiobacterium_valvarum 3.729134e-02 1.665779e-01"
## [5464] "Alkalilimnicola_ehrlichii 1.235235e-01 2.394246e+00"
## [5465] "Escherichia_coli -5.138141e-01 -2.546025e+00"
## [5466] "Thiohalorhabdus_denitrificans -3.945410e-01 2.869643e+00"
## [5467] "Pseudomonas_aeruginosa 5.717113e-01 1.223833e+00"
## [5468] "Acholeplasma_oculi 1.048379e+00 -2.697751e-01"
## [5469] "Candida_parapsilosis -3.664648e-01 -1.016664e+00"
## [5470] "Nakamurella_silvestris 7.335507e-02 -6.418334e-03"
## [5471] "Prevotella_jejuni -6.983812e-02 2.859140e-01"
## [5472] "Prevotella_pallens -1.004721e+00 -5.472802e-01"
## [5473] "Prevotella_salivae -8.381929e-01 -2.417950e-01"
## [5474] "Tannerella_sp_oral_taxon_HOT_286 -4.492386e-01 -1.287496e+00"
## [5475] "Capnocytophaga_gingivalis -2.671382e-02 -1.360971e+00"
## [5476] "Lactobacillus_gasseri 6.588323e-01 -1.850504e+00"
## [5477] "Sharpea_azabuensis 2.351944e-01 -1.814749e-01"
## [5478] "Streptococcus_mutans -1.331575e+00 -4.527503e+00"
## [5479] "Oribacterium_asaccharolyticum -1.629958e-01 -9.999696e-01"
## [5480] "Megasphaera_micronuciformis -6.772655e-01 -1.909780e+00"
## [5481] "Neisseria_flavescens 3.938367e+00 -3.613044e+00"
## [5482] "Neisseria_subflava 2.891662e+00 -2.948346e+00"
## [5483] "Stenotrophomonas_maltophilia 6.439915e+00 -6.272884e+00"
## [5484] "Stenotrophomonas_pavanii 3.951244e+00 -2.205444e+00"
## [5485] "Stenotrophomonas_rhizophila 5.193587e+00 -2.638354e+00"
## [5486] "Streptococcus_sobrinus -2.563162e-01 -1.749323e+00"
## [5487] "Eggerthia_catenaformis -1.179375e-01 -1.852924e+00"
## [5488] "Haemophilus_parainfluenzae 1.601386e-01 -8.058003e-01"
## [5489] ""
## [5490] "$fits"
## [5491] "NULL"
## [5492] ""maaslin_sputum <- read.csv("/Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/all_results.tsv", sep = "\t")
maaslin_spt_transformed_otu <- read.csv("/Users/minsikkim/Dropbox/Project_SICAS2_microbiome/5_Scripts/MGK/Host_depletion_git/data/maaslin_raw/features/filtered_data_norm_transformed.tsv",
sep = "\t")CLR normalization
Description
CLR transform was conducted with microbiome package
CLR - microboime
# CLR transform with `microbiome` package ---------------------------------
# Using phyloseq$phyloseq_rel_filtered, do CLR transform
physeq0_clr_all <- phyloseq$phyloseq_count_filtered %>%
microbiome::transform(., 'clr')
#Do I have to add pseudo counts?
physeq0_clr__pseudocnt_all <- phyloseq$phyloseq_count_filtered %>% {
otu_table(phyloseq$phyloseq_count_filtered) <- phyloseq$phyloseq_count_filtered %>% otu_table + 1
phyloseq$phyloseq_count_filtered
} %>%
microbiome::transform(., 'clr')
physeq0_clr__pseudocnt_all %>% otu_table## OTU Table: [203 taxa and 124 samples]
## taxa are rows
## NS_8_c_qiaamp NS_8_b_lyPMA NS_8_a_control
## Actinobaculum_sp_oral_taxon_183 -0.8411541 -0.3041196 -0.3561883
## Actinomyces_georgiae -0.8411541 -0.3041196 -0.3561883
## Actinomyces_graevenitzii -0.8411541 -0.3041196 -0.3561883
## Actinomyces_hongkongensis -0.8411541 -0.3041196 -0.3561883
## Actinomyces_johnsonii -0.8411541 -0.3041196 -0.3561883
## Actinomyces_massiliensis -0.8411541 -0.3041196 -0.3561883
## Actinomyces_meyeri -0.8411541 -0.3041196 -0.3561883
## Actinomyces_naeslundii -0.8411541 -0.3041196 -0.3561883
## Actinomyces_odontolyticus -0.8411541 -0.3041196 -0.3561883
## Actinomyces_oris -0.8411541 -0.3041196 -0.3561883
## Actinomyces_sp_HMSC035G02 -0.8411541 -0.3041196 -0.3561883
## Actinomyces_sp_HPA0247 -0.8411541 -0.3041196 -0.3561883
## Actinomyces_sp_ICM47 -0.8411541 -0.3041196 -0.3561883
## Actinomyces_sp_S6_Spd3 -0.8411541 -0.3041196 -0.3561883
## Actinomyces_sp_oral_taxon_170 -0.8411541 -0.3041196 -0.3561883
## Actinomyces_sp_oral_taxon_180 -0.8411541 -0.3041196 -0.3561883
## Actinomyces_sp_oral_taxon_181 -0.8411541 -0.3041196 -0.3561883
## Actinomyces_sp_oral_taxon_414 -0.8411541 -0.3041196 -0.3561883
## Actinomyces_sp_oral_taxon_448 -0.8411541 -0.3041196 -0.3561883
## Actinomyces_sp_oral_taxon_897 -0.8411541 -0.3041196 -0.3561883
## Actinomyces_viscosus -0.8411541 -0.3041196 -0.3561883
## Aeriscardovia_aeriphila 4.3179012 -0.3041196 -0.3561883
## Alloscardovia_omnicolens -0.8411541 -0.3041196 -0.3561883
## Bifidobacterium_dentium -0.8411541 -0.3041196 -0.3561883
## Bifidobacterium_longum -0.8411541 -0.3041196 -0.3561883
## Scardovia_wiggsiae -0.8411541 -0.3041196 -0.3561883
## Corynebacterium_accolens 16.3316254 12.4374225 12.4213158
## Corynebacterium_atypicum 8.5076430 4.2602286 3.9745450
## Corynebacterium_durum -0.8411541 -0.3041196 -0.3561883
## Corynebacterium_matruchotii -0.8411541 -0.3041196 -0.3561883
## Corynebacterium_pseudodiphtheriticum 11.2866056 -0.3041196 9.3158715
## Corynebacterium_pseudogenitalium 4.9518595 -0.3041196 -0.3561883
## Corynebacterium_tuberculostearicum -0.8411541 -0.3041196 -0.3561883
## Rothia_aeria -0.8411541 -0.3041196 -0.3561883
## Rothia_dentocariosa -0.8411541 -0.3041196 -0.3561883
## Rothia_mucilaginosa -0.8411541 -0.3041196 -0.3561883
## Cutibacterium_acnes 12.3218329 8.4186233 9.0889079
## Cutibacterium_granulosum 9.4777489 7.3639741 -0.3561883
## Propionibacterium_humerusii 6.1077431 -0.3041196 -0.3561883
## Propionibacterium_namnetense 6.8004104 -0.3041196 -0.3561883
## Propionibacterium_acidifaciens -0.8411541 -0.3041196 -0.3561883
## Pseudopropionibacterium_propionicum -0.8411541 -0.3041196 -0.3561883
## Atopobium_deltae -0.8411541 -0.3041196 -0.3561883
## Atopobium_parvulum -0.8411541 -0.3041196 -0.3561883
## Atopobium_rimae -0.8411541 -0.3041196 -0.3561883
## Olsenella_profusa -0.8411541 -0.3041196 -0.3561883
## Olsenella_scatoligenes 2.4910504 -0.3041196 -0.3561883
## Olsenella_uli -0.8411541 -0.3041196 -0.3561883
## Collinsella_aerofaciens 4.2887446 -0.3041196 -0.3561883
## Collinsella_intestinalis 3.2018972 -0.3041196 -0.3561883
## Collinsella_stercoris -0.8411541 -0.3041196 -0.3561883
## Enorma_massiliensis -0.8411541 -0.3041196 -0.3561883
## [Collinsella]_massiliensis 4.2587123 -0.3041196 -0.3561883
## Asaccharobacter_celatus -0.8411541 -0.3041196 -0.3561883
## Denitrobacterium_detoxificans -0.8411541 -0.3041196 -0.3561883
## Enterorhabdus_caecimuris -0.8411541 -0.3041196 -0.3561883
## Slackia_exigua -0.8411541 -0.3041196 -0.3561883
## Slackia_isoflavoniconvertens 5.7394851 -0.3041196 -0.3561883
## Rubrobacter_radiotolerans -0.8411541 -0.3041196 -0.3561883
## Thermoleophilum_album 3.5408726 -0.3041196 -0.3561883
## Porphyromonas_endodontalis -0.8411541 -0.3041196 -0.3561883
## Porphyromonas_somerae -0.8411541 -0.3041196 -0.3561883
## Prevotella_histicola -0.8411541 -0.3041196 -0.3561883
## Prevotella_melaninogenica -0.8411541 -0.3041196 -0.3561883
## Prevotella_oris -0.8411541 -0.3041196 -0.3561883
## Kouleothrix_aurantiaca -0.8411541 -0.3041196 -0.3561883
## Hydrogenibacillus_schlegelii -0.8411541 -0.3041196 -0.3561883
## Gemella_asaccharolytica -0.8411541 -0.3041196 -0.3561883
## Gemella_bergeri -0.8411541 -0.3041196 -0.3561883
## Gemella_haemolysans -0.8411541 -0.3041196 -0.3561883
## Gemella_morbillorum -0.8411541 -0.3041196 -0.3561883
## Gemella_sanguinis -0.8411541 -0.3041196 -0.3561883
## Brochothrix_campestris -0.8411541 -0.3041196 -0.3561883
## Staphylococcus_argenteus -0.8411541 -0.3041196 -0.3561883
## Staphylococcus_aureus -0.8411541 -0.3041196 -0.3561883
## Staphylococcus_epidermidis 9.4363079 -0.3041196 7.8698501
## Staphylococcus_schweitzeri -0.8411541 -0.3041196 -0.3561883
## Abiotrophia_defectiva -0.8411541 -0.3041196 -0.3561883
## Abiotrophia_sp_HMSC24B09 -0.8411541 -0.3041196 -0.3561883
## Dolosigranulum_pigrum 12.5056560 5.6093834 11.1243069
## Granulicatella_adiacens -0.8411541 -0.3041196 -0.3561883
## Granulicatella_elegans -0.8411541 -0.3041196 -0.3561883
## Enterococcus_faecalis -0.8411541 -0.3041196 -0.3561883
## Lactobacillus_rhamnosus -0.8411541 -0.3041196 -0.3561883
## Streptococcus_anginosus -0.8411541 -0.3041196 -0.3561883
## Streptococcus_australis -0.8411541 -0.3041196 -0.3561883
## Streptococcus_cristatus -0.8411541 -0.3041196 -0.3561883
## Streptococcus_gordonii -0.8411541 -0.3041196 -0.3561883
## Streptococcus_infantis -0.8411541 -0.3041196 -0.3561883
## Streptococcus_milleri -0.8411541 -0.3041196 -0.3561883
## Streptococcus_mitis -0.8411541 -0.3041196 -0.3561883
## Streptococcus_oralis -0.8411541 -0.3041196 -0.3561883
## Streptococcus_parasanguinis -0.8411541 -0.3041196 -0.3561883
## Streptococcus_peroris -0.8411541 -0.3041196 -0.3561883
## Streptococcus_pneumoniae -0.8411541 -0.3041196 -0.3561883
## Streptococcus_pseudopneumoniae -0.8411541 -0.3041196 -0.3561883
## Streptococcus_salivarius -0.8411541 -0.3041196 -0.3561883
## Streptococcus_sanguinis -0.8411541 -0.3041196 -0.3561883
## Streptococcus_sp_A12 -0.8411541 -0.3041196 -0.3561883
## Streptococcus_sp_F0442 -0.8411541 -0.3041196 -0.3561883
## Streptococcus_sp_HMSC034E03 -0.8411541 -0.3041196 -0.3561883
## Streptococcus_sp_HMSC067H01 -0.8411541 -0.3041196 -0.3561883
## Streptococcus_sp_HMSC071D03 -0.8411541 -0.3041196 -0.3561883
## Streptococcus_sp_HPH0090 -0.8411541 -0.3041196 -0.3561883
## Streptococcus_sp_M334 -0.8411541 -0.3041196 -0.3561883
## Streptococcus_vestibularis -0.8411541 -0.3041196 -0.3561883
## Eubacterium_brachy -0.8411541 -0.3041196 -0.3561883
## Eubacterium_infirmum -0.8411541 -0.3041196 -0.3561883
## Eubacterium_nodatum -0.8411541 -0.3041196 -0.3561883
## Eubacterium_sulci -0.8411541 -0.3041196 -0.3561883
## Mogibacterium_diversum -0.8411541 -0.3041196 -0.3561883
## Mogibacterium_pumilum -0.8411541 -0.3041196 -0.3561883
## Mogibacterium_timidum -0.8411541 -0.3041196 -0.3561883
## Lachnoanaerobaculum_saburreum -0.8411541 -0.3041196 -0.3561883
## Oribacterium_parvum -0.8411541 -0.3041196 -0.3561883
## Oribacterium_sinus -0.8411541 -0.3041196 -0.3561883
## Oribacterium_sp_oral_taxon_078 -0.8411541 -0.3041196 -0.3561883
## Stomatobaculum_longum -0.8411541 -0.3041196 -0.3561883
## Peptostreptococcus_stomatis -0.8411541 -0.3041196 -0.3561883
## Bulleidia_extructa -0.8411541 -0.3041196 -0.3561883
## Solobacterium_moorei -0.8411541 -0.3041196 -0.3561883
## Limnochorda_pilosa 4.5248219 -0.3041196 -0.3561883
## Veillonella_atypica -0.8411541 -0.3041196 -0.3561883
## Veillonella_dispar -0.8411541 -0.3041196 -0.3561883
## Veillonella_infantium -0.8411541 -0.3041196 -0.3561883
## Veillonella_parvula -0.8411541 -0.3041196 -0.3561883
## Veillonella_sp_T11011_6 -0.8411541 -0.3041196 -0.3561883
## Anaerococcus_nagyae -0.8411541 -0.3041196 -0.3561883
## Finegoldia_magna -0.8411541 -0.3041196 -0.3561883
## Parvimonas_micra -0.8411541 -0.3041196 -0.3561883
## Parvimonas_sp_oral_taxon_110 -0.8411541 -0.3041196 -0.3561883
## Parvimonas_sp_oral_taxon_393 -0.8411541 -0.3041196 -0.3561883
## Fusobacterium_nucleatum -0.8411541 -0.3041196 -0.3561883
## Leptotrichia_wadei -0.8411541 -0.3041196 -0.3561883
## Gemmata_obscuriglobus -0.8411541 -0.3041196 -0.3561883
## Paludisphaera_borealis -0.8411541 -0.3041196 -0.3561883
## Achromobacter_xylosoxidans -0.8411541 -0.3041196 -0.3561883
## Cupriavidus_sp 10.5725586 11.8084168 7.4034259
## Sutterella_parvirubra -0.8411541 -0.3041196 -0.3561883
## Anaerobiospirillum_thomasii -0.8411541 -0.3041196 -0.3561883
## Cardiobacterium_hominis -0.8411541 -0.3041196 -0.3561883
## Cardiobacterium_valvarum -0.8411541 -0.3041196 -0.3561883
## Alkalilimnicola_ehrlichii -0.8411541 -0.3041196 -0.3561883
## Escherichia_coli -0.8411541 -0.3041196 -0.3561883
## Thiohalorhabdus_denitrificans -0.8411541 -0.3041196 -0.3561883
## Pseudomonas_aeruginosa -0.8411541 -0.3041196 -0.3561883
## Acholeplasma_oculi -0.8411541 -0.3041196 -0.3561883
## Candida_albicans -0.8411541 -0.3041196 -0.3561883
## Candida_dubliniensis -0.8411541 -0.3041196 -0.3561883
## Candida_parapsilosis -0.8411541 -0.3041196 -0.3561883
## Malassezia_restricta 13.2677199 9.7093876 8.2584945
## Nakamurella_silvestris -0.8411541 -0.3041196 -0.3561883
## Alloprevotella_tannerae -0.8411541 -0.3041196 -0.3561883
## Prevotella_jejuni -0.8411541 -0.3041196 -0.3561883
## Prevotella_pallens -0.8411541 -0.3041196 -0.3561883
## Prevotella_salivae -0.8411541 -0.3041196 -0.3561883
## Prevotella_sp_oral_taxon_306 -0.8411541 -0.3041196 -0.3561883
## Prevotella_veroralis -0.8411541 -0.3041196 -0.3561883
## Tannerella_sp_oral_taxon_808 -0.8411541 -0.3041196 -0.3561883
## Tannerella_sp_oral_taxon_HOT_286 -0.8411541 -0.3041196 -0.3561883
## Capnocytophaga_gingivalis -0.8411541 -0.3041196 -0.3561883
## Bacillus_ginsengihumi -0.8411541 -0.3041196 -0.3561883
## Listeria_floridensis -0.8411541 -0.3041196 -0.3561883
## Agitococcus_lubricus -0.8411541 -0.3041196 -0.3561883
## Lactobacillus_fermentum -0.8411541 -0.3041196 -0.3561883
## Lactobacillus_gasseri -0.8411541 -0.3041196 -0.3561883
## Sharpea_azabuensis -0.8411541 -0.3041196 -0.3561883
## Streptococcus_mutans -0.8411541 -0.3041196 -0.3561883
## Oribacterium_asaccharolyticum -0.8411541 -0.3041196 -0.3561883
## Megasphaera_micronuciformis -0.8411541 -0.3041196 -0.3561883
## Neisseria_flavescens -0.8411541 -0.3041196 -0.3561883
## Neisseria_subflava -0.8411541 -0.3041196 -0.3561883
## Stenotrophomonas_maltophilia -0.8411541 -0.3041196 -0.3561883
## Stenotrophomonas_pavanii -0.8411541 -0.3041196 -0.3561883
## Stenotrophomonas_rhizophila -0.8411541 -0.3041196 -0.3561883
## Bacillus_intestinalis -0.8411541 -0.3041196 -0.3561883
## Listeria_innocua -0.8411541 -0.3041196 -0.3561883
## Listeria_monocytogenes -0.8411541 -0.3041196 -0.3561883
## Staphylococcus_haemolyticus -0.8411541 -0.3041196 -0.3561883
## Streptococcus_sobrinus -0.8411541 -0.3041196 -0.3561883
## Eggerthia_catenaformis -0.8411541 -0.3041196 -0.3561883
## Leptotrichia_sp_oral_taxon_498 -0.8411541 -0.3041196 -0.3561883
## Rickettsia_felis -0.8411541 -0.3041196 -0.3561883
## Haemophilus_parainfluenzae -0.8411541 -0.3041196 -0.3561883
## Candida_orthopsilosis -0.8411541 -0.3041196 -0.3561883
## Nannocystis_exedens -0.8411541 -0.3041196 -0.3561883
## Campylobacter_concisus -0.8411541 -0.3041196 -0.3561883
## Franconibacter_helveticus -0.8411541 -0.3041196 -0.3561883
## Klebsiella_pneumoniae -0.8411541 -0.3041196 -0.3561883
## Salmonella_enterica -0.8411541 -0.3041196 -0.3561883
## Superficieibacter_electus -0.8411541 -0.3041196 -0.3561883
## Pseudomonas_fluorescens -0.8411541 -0.3041196 -0.3561883
## Saccharomyces_cerevisiae -0.8411541 -0.3041196 -0.3561883
## S._cerevisiae x S._kudriavzevii -0.8411541 -0.3041196 -0.3561883
## Saccharomyces_kudriavzevii -0.8411541 -0.3041196 -0.3561883
## Cryptococcus_gattii_VGI -0.8411541 -0.3041196 -0.3561883
## Cryptococcus_gattii_VGII -0.8411541 -0.3041196 -0.3561883
## Cryptococcus_gattii_VGIII -0.8411541 -0.3041196 -0.3561883
## Cryptococcus_neoformans -0.8411541 -0.3041196 -0.3561883
## Listeria_marthii -0.8411541 -0.3041196 -0.3561883
## Erwinia_persicina -0.8411541 -0.3041196 -0.3561883
## Pseudomonas_formosensis -0.8411541 -0.3041196 -0.3561883
## Pseudomonas_putida -0.8411541 -0.3041196 -0.3561883
## NS_6_c_qiaamp NS_6_b_lyPMA NS_6_a_control
## Actinobaculum_sp_oral_taxon_183 -0.8498257 -0.1542195 -0.6064536
## Actinomyces_georgiae -0.8498257 -0.1542195 -0.6064536
## Actinomyces_graevenitzii -0.8498257 -0.1542195 -0.6064536
## Actinomyces_hongkongensis -0.8498257 -0.1542195 -0.6064536
## Actinomyces_johnsonii -0.8498257 -0.1542195 -0.6064536
## Actinomyces_massiliensis -0.8498257 -0.1542195 -0.6064536
## Actinomyces_meyeri -0.8498257 -0.1542195 -0.6064536
## Actinomyces_naeslundii -0.8498257 -0.1542195 -0.6064536
## Actinomyces_odontolyticus -0.8498257 -0.1542195 -0.6064536
## Actinomyces_oris -0.8498257 -0.1542195 -0.6064536
## Actinomyces_sp_HMSC035G02 -0.8498257 -0.1542195 -0.6064536
## Actinomyces_sp_HPA0247 -0.8498257 -0.1542195 -0.6064536
## Actinomyces_sp_ICM47 -0.8498257 -0.1542195 -0.6064536
## Actinomyces_sp_S6_Spd3 -0.8498257 -0.1542195 -0.6064536
## Actinomyces_sp_oral_taxon_170 -0.8498257 -0.1542195 -0.6064536
## Actinomyces_sp_oral_taxon_180 -0.8498257 -0.1542195 -0.6064536
## Actinomyces_sp_oral_taxon_181 -0.8498257 -0.1542195 -0.6064536
## Actinomyces_sp_oral_taxon_414 -0.8498257 -0.1542195 -0.6064536
## Actinomyces_sp_oral_taxon_448 -0.8498257 -0.1542195 -0.6064536
## Actinomyces_sp_oral_taxon_897 -0.8498257 -0.1542195 -0.6064536
## Actinomyces_viscosus -0.8498257 -0.1542195 -0.6064536
## Aeriscardovia_aeriphila 5.2459989 -0.1542195 -0.6064536
## Alloscardovia_omnicolens -0.8498257 -0.1542195 -0.6064536
## Bifidobacterium_dentium -0.8498257 -0.1542195 -0.6064536
## Bifidobacterium_longum -0.8498257 -0.1542195 -0.6064536
## Scardovia_wiggsiae -0.8498257 -0.1542195 -0.6064536
## Corynebacterium_accolens 13.0085863 -0.1542195 12.3813561
## Corynebacterium_atypicum 6.2493761 -0.1542195 4.5234451
## Corynebacterium_durum -0.8498257 -0.1542195 -0.6064536
## Corynebacterium_matruchotii -0.8498257 -0.1542195 -0.6064536
## Corynebacterium_pseudodiphtheriticum -0.8498257 -0.1542195 -0.6064536
## Corynebacterium_pseudogenitalium -0.8498257 -0.1542195 -0.6064536
## Corynebacterium_tuberculostearicum -0.8498257 -0.1542195 -0.6064536
## Rothia_aeria -0.8498257 -0.1542195 -0.6064536
## Rothia_dentocariosa -0.8498257 -0.1542195 -0.6064536
## Rothia_mucilaginosa -0.8498257 -0.1542195 -0.6064536
## Cutibacterium_acnes 16.6939174 12.2648535 14.8736561
## Cutibacterium_granulosum 13.4251665 -0.1542195 11.7581174
## Propionibacterium_humerusii 8.1970542 -0.1542195 6.3670894
## Propionibacterium_namnetense 9.1516050 -0.1542195 6.8540367
## Propionibacterium_acidifaciens -0.8498257 -0.1542195 -0.6064536
## Pseudopropionibacterium_propionicum -0.8498257 -0.1542195 -0.6064536
## Atopobium_deltae -0.8498257 -0.1542195 -0.6064536
## Atopobium_parvulum -0.8498257 -0.1542195 -0.6064536
## Atopobium_rimae -0.8498257 -0.1542195 -0.6064536
## Olsenella_profusa -0.8498257 -0.1542195 -0.6064536
## Olsenella_scatoligenes -0.8498257 -0.1542195 -0.6064536
## Olsenella_uli -0.8498257 -0.1542195 -0.6064536
## Collinsella_aerofaciens -0.8498257 -0.1542195 -0.6064536
## Collinsella_intestinalis 3.1932256 -0.1542195 -0.6064536
## Collinsella_stercoris -0.8498257 -0.1542195 -0.6064536
## Enorma_massiliensis -0.8498257 -0.1542195 -0.6064536
## [Collinsella]_massiliensis 6.5360254 -0.1542195 4.1810381
## Asaccharobacter_celatus -0.8498257 -0.1542195 -0.6064536
## Denitrobacterium_detoxificans -0.8498257 -0.1542195 -0.6064536
## Enterorhabdus_caecimuris -0.8498257 -0.1542195 -0.6064536
## Slackia_exigua -0.8498257 -0.1542195 -0.6064536
## Slackia_isoflavoniconvertens 4.1337810 -0.1542195 -0.6064536
## Rubrobacter_radiotolerans -0.8498257 -0.1542195 -0.6064536
## Thermoleophilum_album 6.0559276 -0.1542195 4.4108262
## Porphyromonas_endodontalis -0.8498257 -0.1542195 -0.6064536
## Porphyromonas_somerae -0.8498257 -0.1542195 -0.6064536
## Prevotella_histicola -0.8498257 -0.1542195 -0.6064536
## Prevotella_melaninogenica -0.8498257 -0.1542195 -0.6064536
## Prevotella_oris -0.8498257 -0.1542195 -0.6064536
## Kouleothrix_aurantiaca -0.8498257 -0.1542195 -0.6064536
## Hydrogenibacillus_schlegelii 4.4972819 -0.1542195 -0.6064536
## Gemella_asaccharolytica 9.3611098 -0.1542195 8.0107659
## Gemella_bergeri -0.8498257 -0.1542195 -0.6064536
## Gemella_haemolysans -0.8498257 -0.1542195 -0.6064536
## Gemella_morbillorum -0.8498257 -0.1542195 -0.6064536
## Gemella_sanguinis -0.8498257 -0.1542195 -0.6064536
## Brochothrix_campestris -0.8498257 -0.1542195 -0.6064536
## Staphylococcus_argenteus -0.8498257 -0.1542195 -0.6064536
## Staphylococcus_aureus -0.8498257 -0.1542195 -0.6064536
## Staphylococcus_epidermidis 10.0741144 -0.1542195 10.2584319
## Staphylococcus_schweitzeri -0.8498257 -0.1542195 -0.6064536
## Abiotrophia_defectiva -0.8498257 -0.1542195 -0.6064536
## Abiotrophia_sp_HMSC24B09 -0.8498257 -0.1542195 -0.6064536
## Dolosigranulum_pigrum -0.8498257 -0.1542195 -0.6064536
## Granulicatella_adiacens -0.8498257 -0.1542195 -0.6064536
## Granulicatella_elegans -0.8498257 -0.1542195 -0.6064536
## Enterococcus_faecalis -0.8498257 -0.1542195 -0.6064536
## Lactobacillus_rhamnosus -0.8498257 -0.1542195 -0.6064536
## Streptococcus_anginosus -0.8498257 -0.1542195 -0.6064536
## Streptococcus_australis -0.8498257 -0.1542195 -0.6064536
## Streptococcus_cristatus -0.8498257 -0.1542195 -0.6064536
## Streptococcus_gordonii -0.8498257 -0.1542195 -0.6064536
## Streptococcus_infantis -0.8498257 -0.1542195 -0.6064536
## Streptococcus_milleri -0.8498257 -0.1542195 -0.6064536
## Streptococcus_mitis -0.8498257 -0.1542195 -0.6064536
## Streptococcus_oralis -0.8498257 -0.1542195 -0.6064536
## Streptococcus_parasanguinis -0.8498257 -0.1542195 -0.6064536
## Streptococcus_peroris -0.8498257 -0.1542195 -0.6064536
## Streptococcus_pneumoniae -0.8498257 -0.1542195 -0.6064536
## Streptococcus_pseudopneumoniae -0.8498257 -0.1542195 -0.6064536
## Streptococcus_salivarius -0.8498257 -0.1542195 -0.6064536
## Streptococcus_sanguinis -0.8498257 -0.1542195 -0.6064536
## Streptococcus_sp_A12 -0.8498257 -0.1542195 -0.6064536
## Streptococcus_sp_F0442 -0.8498257 -0.1542195 -0.6064536
## Streptococcus_sp_HMSC034E03 -0.8498257 -0.1542195 -0.6064536
## Streptococcus_sp_HMSC067H01 -0.8498257 -0.1542195 -0.6064536
## Streptococcus_sp_HMSC071D03 -0.8498257 -0.1542195 -0.6064536
## Streptococcus_sp_HPH0090 -0.8498257 -0.1542195 -0.6064536
## Streptococcus_sp_M334 -0.8498257 -0.1542195 -0.6064536
## Streptococcus_vestibularis -0.8498257 -0.1542195 -0.6064536
## Eubacterium_brachy -0.8498257 -0.1542195 -0.6064536
## Eubacterium_infirmum -0.8498257 -0.1542195 -0.6064536
## Eubacterium_nodatum -0.8498257 -0.1542195 -0.6064536
## Eubacterium_sulci -0.8498257 -0.1542195 -0.6064536
## Mogibacterium_diversum -0.8498257 -0.1542195 -0.6064536
## Mogibacterium_pumilum -0.8498257 -0.1542195 -0.6064536
## Mogibacterium_timidum -0.8498257 -0.1542195 -0.6064536
## Lachnoanaerobaculum_saburreum -0.8498257 -0.1542195 -0.6064536
## Oribacterium_parvum -0.8498257 -0.1542195 -0.6064536
## Oribacterium_sinus -0.8498257 -0.1542195 -0.6064536
## Oribacterium_sp_oral_taxon_078 -0.8498257 -0.1542195 -0.6064536
## Stomatobaculum_longum -0.8498257 -0.1542195 -0.6064536
## Peptostreptococcus_stomatis -0.8498257 -0.1542195 -0.6064536
## Bulleidia_extructa -0.8498257 -0.1542195 -0.6064536
## Solobacterium_moorei -0.8498257 -0.1542195 -0.6064536
## Limnochorda_pilosa -0.8498257 -0.1542195 -0.6064536
## Veillonella_atypica -0.8498257 -0.1542195 -0.6064536
## Veillonella_dispar -0.8498257 -0.1542195 -0.6064536
## Veillonella_infantium -0.8498257 -0.1542195 -0.6064536
## Veillonella_parvula -0.8498257 -0.1542195 -0.6064536
## Veillonella_sp_T11011_6 -0.8498257 -0.1542195 -0.6064536
## Anaerococcus_nagyae 10.9228144 -0.1542195 9.4823926
## Finegoldia_magna -0.8498257 -0.1542195 -0.6064536
## Parvimonas_micra -0.8498257 -0.1542195 -0.6064536
## Parvimonas_sp_oral_taxon_110 -0.8498257 -0.1542195 -0.6064536
## Parvimonas_sp_oral_taxon_393 -0.8498257 -0.1542195 -0.6064536
## Fusobacterium_nucleatum -0.8498257 -0.1542195 -0.6064536
## Leptotrichia_wadei -0.8498257 -0.1542195 -0.6064536
## Gemmata_obscuriglobus -0.8498257 -0.1542195 -0.6064536
## Paludisphaera_borealis -0.8498257 -0.1542195 -0.6064536
## Achromobacter_xylosoxidans -0.8498257 -0.1542195 -0.6064536
## Cupriavidus_sp 11.4574986 12.1893473 9.4482947
## Sutterella_parvirubra 5.5863247 6.3896924 -0.6064536
## Anaerobiospirillum_thomasii -0.8498257 -0.1542195 -0.6064536
## Cardiobacterium_hominis -0.8498257 -0.1542195 -0.6064536
## Cardiobacterium_valvarum -0.8498257 -0.1542195 -0.6064536
## Alkalilimnicola_ehrlichii -0.8498257 -0.1542195 -0.6064536
## Escherichia_coli -0.8498257 -0.1542195 -0.6064536
## Thiohalorhabdus_denitrificans -0.8498257 -0.1542195 -0.6064536
## Pseudomonas_aeruginosa -0.8498257 -0.1542195 -0.6064536
## Acholeplasma_oculi -0.8498257 -0.1542195 -0.6064536
## Candida_albicans -0.8498257 -0.1542195 -0.6064536
## Candida_dubliniensis -0.8498257 -0.1542195 -0.6064536
## Candida_parapsilosis -0.8498257 -0.1542195 -0.6064536
## Malassezia_restricta 13.4279405 -0.1542195 12.6767353
## Nakamurella_silvestris -0.8498257 -0.1542195 -0.6064536
## Alloprevotella_tannerae -0.8498257 -0.1542195 -0.6064536
## Prevotella_jejuni -0.8498257 -0.1542195 -0.6064536
## Prevotella_pallens -0.8498257 -0.1542195 -0.6064536
## Prevotella_salivae -0.8498257 -0.1542195 -0.6064536
## Prevotella_sp_oral_taxon_306 -0.8498257 -0.1542195 -0.6064536
## Prevotella_veroralis -0.8498257 -0.1542195 -0.6064536
## Tannerella_sp_oral_taxon_808 -0.8498257 -0.1542195 -0.6064536
## Tannerella_sp_oral_taxon_HOT_286 -0.8498257 -0.1542195 -0.6064536
## Capnocytophaga_gingivalis -0.8498257 -0.1542195 -0.6064536
## Bacillus_ginsengihumi -0.8498257 -0.1542195 -0.6064536
## Listeria_floridensis -0.8498257 -0.1542195 -0.6064536
## Agitococcus_lubricus -0.8498257 -0.1542195 -0.6064536
## Lactobacillus_fermentum -0.8498257 -0.1542195 -0.6064536
## Lactobacillus_gasseri -0.8498257 -0.1542195 -0.6064536
## Sharpea_azabuensis -0.8498257 -0.1542195 -0.6064536
## Streptococcus_mutans -0.8498257 -0.1542195 -0.6064536
## Oribacterium_asaccharolyticum -0.8498257 -0.1542195 -0.6064536
## Megasphaera_micronuciformis -0.8498257 -0.1542195 -0.6064536
## Neisseria_flavescens -0.8498257 -0.1542195 -0.6064536
## Neisseria_subflava -0.8498257 -0.1542195 -0.6064536
## Stenotrophomonas_maltophilia -0.8498257 -0.1542195 -0.6064536
## Stenotrophomonas_pavanii -0.8498257 -0.1542195 -0.6064536
## Stenotrophomonas_rhizophila -0.8498257 -0.1542195 -0.6064536
## Bacillus_intestinalis -0.8498257 -0.1542195 -0.6064536
## Listeria_innocua -0.8498257 -0.1542195 -0.6064536
## Listeria_monocytogenes -0.8498257 -0.1542195 -0.6064536
## Staphylococcus_haemolyticus -0.8498257 -0.1542195 -0.6064536
## Streptococcus_sobrinus -0.8498257 -0.1542195 -0.6064536
## Eggerthia_catenaformis -0.8498257 -0.1542195 -0.6064536
## Leptotrichia_sp_oral_taxon_498 -0.8498257 -0.1542195 -0.6064536
## Rickettsia_felis -0.8498257 -0.1542195 -0.6064536
## Haemophilus_parainfluenzae -0.8498257 -0.1542195 -0.6064536
## Candida_orthopsilosis -0.8498257 -0.1542195 -0.6064536
## Nannocystis_exedens -0.8498257 -0.1542195 -0.6064536
## Campylobacter_concisus -0.8498257 -0.1542195 -0.6064536
## Franconibacter_helveticus -0.8498257 -0.1542195 -0.6064536
## Klebsiella_pneumoniae -0.8498257 -0.1542195 -0.6064536
## Salmonella_enterica -0.8498257 -0.1542195 -0.6064536
## Superficieibacter_electus -0.8498257 -0.1542195 -0.6064536
## Pseudomonas_fluorescens -0.8498257 -0.1542195 -0.6064536
## Saccharomyces_cerevisiae -0.8498257 -0.1542195 -0.6064536
## S._cerevisiae x S._kudriavzevii -0.8498257 -0.1542195 -0.6064536
## Saccharomyces_kudriavzevii -0.8498257 -0.1542195 -0.6064536
## Cryptococcus_gattii_VGI -0.8498257 -0.1542195 -0.6064536
## Cryptococcus_gattii_VGII -0.8498257 -0.1542195 -0.6064536
## Cryptococcus_gattii_VGIII -0.8498257 -0.1542195 -0.6064536
## Cryptococcus_neoformans -0.8498257 -0.1542195 -0.6064536
## Listeria_marthii -0.8498257 -0.1542195 -0.6064536
## Erwinia_persicina -0.8498257 -0.1542195 -0.6064536
## Pseudomonas_formosensis -0.8498257 -0.1542195 -0.6064536
## Pseudomonas_putida -0.8498257 -0.1542195 -0.6064536
## NS_37_c_molysis NS_37_b_qiaamp
## Actinobaculum_sp_oral_taxon_183 -0.8880405 -0.8192721
## Actinomyces_georgiae -0.8880405 -0.8192721
## Actinomyces_graevenitzii -0.8880405 -0.8192721
## Actinomyces_hongkongensis -0.8880405 -0.8192721
## Actinomyces_johnsonii -0.8880405 -0.8192721
## Actinomyces_massiliensis -0.8880405 -0.8192721
## Actinomyces_meyeri -0.8880405 -0.8192721
## Actinomyces_naeslundii -0.8880405 -0.8192721
## Actinomyces_odontolyticus -0.8880405 -0.8192721
## Actinomyces_oris -0.8880405 -0.8192721
## Actinomyces_sp_HMSC035G02 -0.8880405 -0.8192721
## Actinomyces_sp_HPA0247 -0.8880405 -0.8192721
## Actinomyces_sp_ICM47 -0.8880405 -0.8192721
## Actinomyces_sp_S6_Spd3 -0.8880405 -0.8192721
## Actinomyces_sp_oral_taxon_170 -0.8880405 -0.8192721
## Actinomyces_sp_oral_taxon_180 -0.8880405 -0.8192721
## Actinomyces_sp_oral_taxon_181 -0.8880405 -0.8192721
## Actinomyces_sp_oral_taxon_414 -0.8880405 -0.8192721
## Actinomyces_sp_oral_taxon_448 -0.8880405 -0.8192721
## Actinomyces_sp_oral_taxon_897 -0.8880405 -0.8192721
## Actinomyces_viscosus -0.8880405 -0.8192721
## Aeriscardovia_aeriphila 4.6532231 5.8206037
## Alloscardovia_omnicolens -0.8880405 -0.8192721
## Bifidobacterium_dentium -0.8880405 -0.8192721
## Bifidobacterium_longum -0.8880405 -0.8192721
## Scardovia_wiggsiae -0.8880405 -0.8192721
## Corynebacterium_accolens 15.0218099 14.9358563
## Corynebacterium_atypicum 7.9222700 7.8972636
## Corynebacterium_durum -0.8880405 -0.8192721
## Corynebacterium_matruchotii -0.8880405 -0.8192721
## Corynebacterium_pseudodiphtheriticum -0.8880405 -0.8192721
## Corynebacterium_pseudogenitalium -0.8880405 -0.8192721
## Corynebacterium_tuberculostearicum -0.8880405 -0.8192721
## Rothia_aeria -0.8880405 -0.8192721
## Rothia_dentocariosa -0.8880405 -0.8192721
## Rothia_mucilaginosa -0.8880405 -0.8192721
## Cutibacterium_acnes 15.1519626 15.9749277
## Cutibacterium_granulosum 12.6474056 13.2047596
## Propionibacterium_humerusii 7.0287670 7.6834164
## Propionibacterium_namnetense 7.6069071 8.3148350
## Propionibacterium_acidifaciens -0.8880405 -0.8192721
## Pseudopropionibacterium_propionicum -0.8880405 -0.8192721
## Atopobium_deltae -0.8880405 -0.8192721
## Atopobium_parvulum -0.8880405 -0.8192721
## Atopobium_rimae -0.8880405 -0.8192721
## Olsenella_profusa -0.8880405 -0.8192721
## Olsenella_scatoligenes 3.1192927 -0.8192721
## Olsenella_uli -0.8880405 -0.8192721
## Collinsella_aerofaciens 3.5663068 -0.8192721
## Collinsella_intestinalis 3.1550108 3.2237792
## Collinsella_stercoris 3.6005959 -0.8192721
## Enorma_massiliensis -0.8880405 -0.8192721
## [Collinsella]_massiliensis 5.4801467 6.2377649
## Asaccharobacter_celatus -0.8880405 -0.8192721
## Denitrobacterium_detoxificans -0.8880405 -0.8192721
## Enterorhabdus_caecimuris -0.8880405 -0.8192721
## Slackia_exigua -0.8880405 -0.8192721
## Slackia_isoflavoniconvertens 5.0677969 4.2176805
## Rubrobacter_radiotolerans -0.8880405 -0.8192721
## Thermoleophilum_album 5.3772608 5.2398511
## Porphyromonas_endodontalis -0.8880405 -0.8192721
## Porphyromonas_somerae -0.8880405 -0.8192721
## Prevotella_histicola -0.8880405 -0.8192721
## Prevotella_melaninogenica -0.8880405 -0.8192721
## Prevotella_oris -0.8880405 -0.8192721
## Kouleothrix_aurantiaca -0.8880405 -0.8192721
## Hydrogenibacillus_schlegelii -0.8880405 -0.8192721
## Gemella_asaccharolytica 8.6421345 8.6998756
## Gemella_bergeri -0.8880405 -0.8192721
## Gemella_haemolysans -0.8880405 -0.8192721
## Gemella_morbillorum -0.8880405 -0.8192721
## Gemella_sanguinis -0.8880405 -0.8192721
## Brochothrix_campestris -0.8880405 -0.8192721
## Staphylococcus_argenteus -0.8880405 -0.8192721
## Staphylococcus_aureus -0.8880405 -0.8192721
## Staphylococcus_epidermidis 10.9303456 10.1099524
## Staphylococcus_schweitzeri -0.8880405 -0.8192721
## Abiotrophia_defectiva -0.8880405 -0.8192721
## Abiotrophia_sp_HMSC24B09 -0.8880405 -0.8192721
## Dolosigranulum_pigrum -0.8880405 -0.8192721
## Granulicatella_adiacens -0.8880405 -0.8192721
## Granulicatella_elegans -0.8880405 -0.8192721
## Enterococcus_faecalis -0.8880405 -0.8192721
## Lactobacillus_rhamnosus -0.8880405 -0.8192721
## Streptococcus_anginosus -0.8880405 -0.8192721
## Streptococcus_australis -0.8880405 -0.8192721
## Streptococcus_cristatus -0.8880405 -0.8192721
## Streptococcus_gordonii -0.8880405 -0.8192721
## Streptococcus_infantis -0.8880405 -0.8192721
## Streptococcus_milleri -0.8880405 -0.8192721
## Streptococcus_mitis -0.8880405 -0.8192721
## Streptococcus_oralis -0.8880405 -0.8192721
## Streptococcus_parasanguinis -0.8880405 -0.8192721
## Streptococcus_peroris -0.8880405 -0.8192721
## Streptococcus_pneumoniae -0.8880405 -0.8192721
## Streptococcus_pseudopneumoniae -0.8880405 -0.8192721
## Streptococcus_salivarius -0.8880405 -0.8192721
## Streptococcus_sanguinis -0.8880405 -0.8192721
## Streptococcus_sp_A12 -0.8880405 -0.8192721
## Streptococcus_sp_F0442 -0.8880405 -0.8192721
## Streptococcus_sp_HMSC034E03 -0.8880405 -0.8192721
## Streptococcus_sp_HMSC067H01 -0.8880405 -0.8192721
## Streptococcus_sp_HMSC071D03 -0.8880405 -0.8192721
## Streptococcus_sp_HPH0090 -0.8880405 -0.8192721
## Streptococcus_sp_M334 -0.8880405 -0.8192721
## Streptococcus_vestibularis -0.8880405 -0.8192721
## Eubacterium_brachy -0.8880405 -0.8192721
## Eubacterium_infirmum -0.8880405 -0.8192721
## Eubacterium_nodatum -0.8880405 -0.8192721
## Eubacterium_sulci -0.8880405 -0.8192721
## Mogibacterium_diversum -0.8880405 -0.8192721
## Mogibacterium_pumilum -0.8880405 -0.8192721
## Mogibacterium_timidum -0.8880405 -0.8192721
## Lachnoanaerobaculum_saburreum -0.8880405 -0.8192721
## Oribacterium_parvum -0.8880405 -0.8192721
## Oribacterium_sinus -0.8880405 -0.8192721
## Oribacterium_sp_oral_taxon_078 -0.8880405 -0.8192721
## Stomatobaculum_longum -0.8880405 -0.8192721
## Peptostreptococcus_stomatis -0.8880405 -0.8192721
## Bulleidia_extructa -0.8880405 -0.8192721
## Solobacterium_moorei -0.8880405 -0.8192721
## Limnochorda_pilosa 6.2111613 5.1313705
## Veillonella_atypica -0.8880405 -0.8192721
## Veillonella_dispar -0.8880405 -0.8192721
## Veillonella_infantium -0.8880405 -0.8192721
## Veillonella_parvula -0.8880405 -0.8192721
## Veillonella_sp_T11011_6 -0.8880405 -0.8192721
## Anaerococcus_nagyae 9.3695136 9.7274368
## Finegoldia_magna -0.8880405 -0.8192721
## Parvimonas_micra -0.8880405 -0.8192721
## Parvimonas_sp_oral_taxon_110 -0.8880405 -0.8192721
## Parvimonas_sp_oral_taxon_393 -0.8880405 -0.8192721
## Fusobacterium_nucleatum -0.8880405 -0.8192721
## Leptotrichia_wadei -0.8880405 -0.8192721
## Gemmata_obscuriglobus -0.8880405 -0.8192721
## Paludisphaera_borealis -0.8880405 -0.8192721
## Achromobacter_xylosoxidans -0.8880405 -0.8192721
## Cupriavidus_sp 10.6091214 11.4239807
## Sutterella_parvirubra 4.8420593 -0.8192721
## Anaerobiospirillum_thomasii -0.8880405 -0.8192721
## Cardiobacterium_hominis -0.8880405 -0.8192721
## Cardiobacterium_valvarum -0.8880405 -0.8192721
## Alkalilimnicola_ehrlichii -0.8880405 -0.8192721
## Escherichia_coli -0.8880405 -0.8192721
## Thiohalorhabdus_denitrificans -0.8880405 -0.8192721
## Pseudomonas_aeruginosa -0.8880405 -0.8192721
## Acholeplasma_oculi -0.8880405 -0.8192721
## Candida_albicans -0.8880405 -0.8192721
## Candida_dubliniensis -0.8880405 -0.8192721
## Candida_parapsilosis -0.8880405 -0.8192721
## Malassezia_restricta 11.6202715 14.5412545
## Nakamurella_silvestris -0.8880405 -0.8192721
## Alloprevotella_tannerae -0.8880405 -0.8192721
## Prevotella_jejuni -0.8880405 -0.8192721
## Prevotella_pallens -0.8880405 -0.8192721
## Prevotella_salivae -0.8880405 -0.8192721
## Prevotella_sp_oral_taxon_306 -0.8880405 -0.8192721
## Prevotella_veroralis -0.8880405 -0.8192721
## Tannerella_sp_oral_taxon_808 -0.8880405 -0.8192721
## Tannerella_sp_oral_taxon_HOT_286 -0.8880405 -0.8192721
## Capnocytophaga_gingivalis -0.8880405 -0.8192721
## Bacillus_ginsengihumi -0.8880405 -0.8192721
## Listeria_floridensis -0.8880405 -0.8192721
## Agitococcus_lubricus -0.8880405 -0.8192721
## Lactobacillus_fermentum -0.8880405 -0.8192721
## Lactobacillus_gasseri -0.8880405 -0.8192721
## Sharpea_azabuensis -0.8880405 -0.8192721
## Streptococcus_mutans -0.8880405 -0.8192721
## Oribacterium_asaccharolyticum -0.8880405 -0.8192721
## Megasphaera_micronuciformis -0.8880405 -0.8192721
## Neisseria_flavescens -0.8880405 -0.8192721
## Neisseria_subflava -0.8880405 -0.8192721
## Stenotrophomonas_maltophilia -0.8880405 -0.8192721
## Stenotrophomonas_pavanii -0.8880405 -0.8192721
## Stenotrophomonas_rhizophila -0.8880405 -0.8192721
## Bacillus_intestinalis -0.8880405 -0.8192721
## Listeria_innocua -0.8880405 -0.8192721
## Listeria_monocytogenes -0.8880405 -0.8192721
## Staphylococcus_haemolyticus -0.8880405 -0.8192721
## Streptococcus_sobrinus -0.8880405 -0.8192721
## Eggerthia_catenaformis -0.8880405 -0.8192721
## Leptotrichia_sp_oral_taxon_498 -0.8880405 -0.8192721
## Rickettsia_felis -0.8880405 -0.8192721
## Haemophilus_parainfluenzae -0.8880405 -0.8192721
## Candida_orthopsilosis -0.8880405 -0.8192721
## Nannocystis_exedens -0.8880405 -0.8192721
## Campylobacter_concisus -0.8880405 -0.8192721
## Franconibacter_helveticus -0.8880405 -0.8192721
## Klebsiella_pneumoniae -0.8880405 -0.8192721
## Salmonella_enterica -0.8880405 -0.8192721
## Superficieibacter_electus -0.8880405 -0.8192721
## Pseudomonas_fluorescens -0.8880405 -0.8192721
## Saccharomyces_cerevisiae -0.8880405 -0.8192721
## S._cerevisiae x S._kudriavzevii -0.8880405 -0.8192721
## Saccharomyces_kudriavzevii -0.8880405 -0.8192721
## Cryptococcus_gattii_VGI -0.8880405 -0.8192721
## Cryptococcus_gattii_VGII -0.8880405 -0.8192721
## Cryptococcus_gattii_VGIII -0.8880405 -0.8192721
## Cryptococcus_neoformans -0.8880405 -0.8192721
## Listeria_marthii -0.8880405 -0.8192721
## Erwinia_persicina -0.8880405 -0.8192721
## Pseudomonas_formosensis -0.8880405 -0.8192721
## Pseudomonas_putida -0.8880405 -0.8192721
## NS_37_a_control NS_26_d_host_zero
## Actinobaculum_sp_oral_taxon_183 -0.5630302 -1.068052
## Actinomyces_georgiae -0.5630302 -1.068052
## Actinomyces_graevenitzii -0.5630302 -1.068052
## Actinomyces_hongkongensis -0.5630302 -1.068052
## Actinomyces_johnsonii -0.5630302 -1.068052
## Actinomyces_massiliensis -0.5630302 -1.068052
## Actinomyces_meyeri -0.5630302 -1.068052
## Actinomyces_naeslundii -0.5630302 3.768230
## Actinomyces_odontolyticus -0.5630302 -1.068052
## Actinomyces_oris -0.5630302 3.236013
## Actinomyces_sp_HMSC035G02 -0.5630302 -1.068052
## Actinomyces_sp_HPA0247 -0.5630302 -1.068052
## Actinomyces_sp_ICM47 -0.5630302 -1.068052
## Actinomyces_sp_S6_Spd3 -0.5630302 -1.068052
## Actinomyces_sp_oral_taxon_170 -0.5630302 -1.068052
## Actinomyces_sp_oral_taxon_180 -0.5630302 -1.068052
## Actinomyces_sp_oral_taxon_181 -0.5630302 -1.068052
## Actinomyces_sp_oral_taxon_414 -0.5630302 -1.068052
## Actinomyces_sp_oral_taxon_448 -0.5630302 -1.068052
## Actinomyces_sp_oral_taxon_897 -0.5630302 -1.068052
## Actinomyces_viscosus -0.5630302 -1.068052
## Aeriscardovia_aeriphila -0.5630302 5.416583
## Alloscardovia_omnicolens -0.5630302 -1.068052
## Bifidobacterium_dentium -0.5630302 -1.068052
## Bifidobacterium_longum -0.5630302 -1.068052
## Scardovia_wiggsiae -0.5630302 -1.068052
## Corynebacterium_accolens 13.5340377 16.462069
## Corynebacterium_atypicum 6.0490109 8.776799
## Corynebacterium_durum -0.5630302 -1.068052
## Corynebacterium_matruchotii -0.5630302 -1.068052
## Corynebacterium_pseudodiphtheriticum -0.5630302 14.334110
## Corynebacterium_pseudogenitalium -0.5630302 5.878924
## Corynebacterium_tuberculostearicum -0.5630302 -1.068052
## Rothia_aeria -0.5630302 -1.068052
## Rothia_dentocariosa -0.5630302 -1.068052
## Rothia_mucilaginosa -0.5630302 -1.068052
## Cutibacterium_acnes 14.2210485 14.558740
## Cutibacterium_granulosum 11.8307412 10.364671
## Propionibacterium_humerusii 6.2270671 6.806307
## Propionibacterium_namnetense 5.7999979 7.711351
## Propionibacterium_acidifaciens -0.5630302 -1.068052
## Pseudopropionibacterium_propionicum -0.5630302 -1.068052
## Atopobium_deltae -0.5630302 -1.068052
## Atopobium_parvulum -0.5630302 -1.068052
## Atopobium_rimae -0.5630302 -1.068052
## Olsenella_profusa -0.5630302 -1.068052
## Olsenella_scatoligenes -0.5630302 -1.068052
## Olsenella_uli -0.5630302 -1.068052
## Collinsella_aerofaciens -0.5630302 4.096734
## Collinsella_intestinalis -0.5630302 4.067746
## Collinsella_stercoris -0.5630302 2.760589
## Enorma_massiliensis -0.5630302 -1.068052
## [Collinsella]_massiliensis 3.1746394 3.727738
## Asaccharobacter_celatus -0.5630302 -1.068052
## Denitrobacterium_detoxificans -0.5630302 -1.068052
## Enterorhabdus_caecimuris -0.5630302 -1.068052
## Slackia_exigua -0.5630302 -1.068052
## Slackia_isoflavoniconvertens -0.5630302 6.582592
## Rubrobacter_radiotolerans -0.5630302 3.556921
## Thermoleophilum_album -0.5630302 4.693999
## Porphyromonas_endodontalis -0.5630302 -1.068052
## Porphyromonas_somerae -0.5630302 -1.068052
## Prevotella_histicola -0.5630302 -1.068052
## Prevotella_melaninogenica -0.5630302 -1.068052
## Prevotella_oris -0.5630302 -1.068052
## Kouleothrix_aurantiaca -0.5630302 -1.068052
## Hydrogenibacillus_schlegelii -0.5630302 -1.068052
## Gemella_asaccharolytica 7.5261455 -1.068052
## Gemella_bergeri -0.5630302 -1.068052
## Gemella_haemolysans -0.5630302 -1.068052
## Gemella_morbillorum -0.5630302 -1.068052
## Gemella_sanguinis -0.5630302 -1.068052
## Brochothrix_campestris -0.5630302 -1.068052
## Staphylococcus_argenteus -0.5630302 -1.068052
## Staphylococcus_aureus -0.5630302 -1.068052
## Staphylococcus_epidermidis 9.9752602 11.461194
## Staphylococcus_schweitzeri -0.5630302 -1.068052
## Abiotrophia_defectiva -0.5630302 -1.068052
## Abiotrophia_sp_HMSC24B09 -0.5630302 -1.068052
## Dolosigranulum_pigrum -0.5630302 14.469367
## Granulicatella_adiacens -0.5630302 -1.068052
## Granulicatella_elegans -0.5630302 -1.068052
## Enterococcus_faecalis -0.5630302 -1.068052
## Lactobacillus_rhamnosus -0.5630302 -1.068052
## Streptococcus_anginosus -0.5630302 -1.068052
## Streptococcus_australis -0.5630302 -1.068052
## Streptococcus_cristatus -0.5630302 -1.068052
## Streptococcus_gordonii -0.5630302 -1.068052
## Streptococcus_infantis -0.5630302 -1.068052
## Streptococcus_milleri -0.5630302 -1.068052
## Streptococcus_mitis -0.5630302 -1.068052
## Streptococcus_oralis -0.5630302 -1.068052
## Streptococcus_parasanguinis -0.5630302 -1.068052
## Streptococcus_peroris -0.5630302 -1.068052
## Streptococcus_pneumoniae -0.5630302 -1.068052
## Streptococcus_pseudopneumoniae -0.5630302 -1.068052
## Streptococcus_salivarius -0.5630302 -1.068052
## Streptococcus_sanguinis -0.5630302 -1.068052
## Streptococcus_sp_A12 -0.5630302 -1.068052
## Streptococcus_sp_F0442 -0.5630302 -1.068052
## Streptococcus_sp_HMSC034E03 -0.5630302 -1.068052
## Streptococcus_sp_HMSC067H01 -0.5630302 -1.068052
## Streptococcus_sp_HMSC071D03 -0.5630302 -1.068052
## Streptococcus_sp_HPH0090 -0.5630302 -1.068052
## Streptococcus_sp_M334 -0.5630302 -1.068052
## Streptococcus_vestibularis -0.5630302 -1.068052
## Eubacterium_brachy -0.5630302 -1.068052
## Eubacterium_infirmum -0.5630302 -1.068052
## Eubacterium_nodatum -0.5630302 -1.068052
## Eubacterium_sulci -0.5630302 -1.068052
## Mogibacterium_diversum -0.5630302 -1.068052
## Mogibacterium_pumilum -0.5630302 -1.068052
## Mogibacterium_timidum -0.5630302 -1.068052
## Lachnoanaerobaculum_saburreum -0.5630302 -1.068052
## Oribacterium_parvum -0.5630302 -1.068052
## Oribacterium_sinus -0.5630302 -1.068052
## Oribacterium_sp_oral_taxon_078 -0.5630302 -1.068052
## Stomatobaculum_longum -0.5630302 -1.068052
## Peptostreptococcus_stomatis -0.5630302 -1.068052
## Bulleidia_extructa -0.5630302 -1.068052
## Solobacterium_moorei -0.5630302 -1.068052
## Limnochorda_pilosa -0.5630302 -1.068052
## Veillonella_atypica -0.5630302 -1.068052
## Veillonella_dispar -0.5630302 -1.068052
## Veillonella_infantium -0.5630302 -1.068052
## Veillonella_parvula -0.5630302 -1.068052
## Veillonella_sp_T11011_6 -0.5630302 -1.068052
## Anaerococcus_nagyae 8.2682436 -1.068052
## Finegoldia_magna -0.5630302 6.071608
## Parvimonas_micra -0.5630302 -1.068052
## Parvimonas_sp_oral_taxon_110 -0.5630302 -1.068052
## Parvimonas_sp_oral_taxon_393 -0.5630302 -1.068052
## Fusobacterium_nucleatum -0.5630302 -1.068052
## Leptotrichia_wadei -0.5630302 -1.068052
## Gemmata_obscuriglobus -0.5630302 -1.068052
## Paludisphaera_borealis -0.5630302 4.204947
## Achromobacter_xylosoxidans -0.5630302 -1.068052
## Cupriavidus_sp 8.1972660 12.126890
## Sutterella_parvirubra -0.5630302 6.225646
## Anaerobiospirillum_thomasii -0.5630302 -1.068052
## Cardiobacterium_hominis -0.5630302 -1.068052
## Cardiobacterium_valvarum -0.5630302 -1.068052
## Alkalilimnicola_ehrlichii -0.5630302 -1.068052
## Escherichia_coli -0.5630302 -1.068052
## Thiohalorhabdus_denitrificans -0.5630302 -1.068052
## Pseudomonas_aeruginosa -0.5630302 -1.068052
## Acholeplasma_oculi -0.5630302 -1.068052
## Candida_albicans -0.5630302 -1.068052
## Candida_dubliniensis -0.5630302 -1.068052
## Candida_parapsilosis -0.5630302 -1.068052
## Malassezia_restricta 12.7353046 8.753520
## Nakamurella_silvestris -0.5630302 -1.068052
## Alloprevotella_tannerae -0.5630302 -1.068052
## Prevotella_jejuni -0.5630302 -1.068052
## Prevotella_pallens -0.5630302 -1.068052
## Prevotella_salivae -0.5630302 -1.068052
## Prevotella_sp_oral_taxon_306 -0.5630302 -1.068052
## Prevotella_veroralis -0.5630302 -1.068052
## Tannerella_sp_oral_taxon_808 -0.5630302 -1.068052
## Tannerella_sp_oral_taxon_HOT_286 -0.5630302 -1.068052
## Capnocytophaga_gingivalis -0.5630302 -1.068052
## Bacillus_ginsengihumi -0.5630302 -1.068052
## Listeria_floridensis -0.5630302 -1.068052
## Agitococcus_lubricus -0.5630302 -1.068052
## Lactobacillus_fermentum -0.5630302 -1.068052
## Lactobacillus_gasseri -0.5630302 -1.068052
## Sharpea_azabuensis -0.5630302 -1.068052
## Streptococcus_mutans -0.5630302 -1.068052
## Oribacterium_asaccharolyticum -0.5630302 -1.068052
## Megasphaera_micronuciformis -0.5630302 -1.068052
## Neisseria_flavescens -0.5630302 -1.068052
## Neisseria_subflava -0.5630302 -1.068052
## Stenotrophomonas_maltophilia -0.5630302 -1.068052
## Stenotrophomonas_pavanii -0.5630302 -1.068052
## Stenotrophomonas_rhizophila -0.5630302 -1.068052
## Bacillus_intestinalis -0.5630302 -1.068052
## Listeria_innocua -0.5630302 -1.068052
## Listeria_monocytogenes -0.5630302 -1.068052
## Staphylococcus_haemolyticus -0.5630302 -1.068052
## Streptococcus_sobrinus -0.5630302 -1.068052
## Eggerthia_catenaformis -0.5630302 -1.068052
## Leptotrichia_sp_oral_taxon_498 -0.5630302 -1.068052
## Rickettsia_felis -0.5630302 -1.068052
## Haemophilus_parainfluenzae -0.5630302 -1.068052
## Candida_orthopsilosis -0.5630302 -1.068052
## Nannocystis_exedens -0.5630302 -1.068052
## Campylobacter_concisus -0.5630302 -1.068052
## Franconibacter_helveticus -0.5630302 -1.068052
## Klebsiella_pneumoniae -0.5630302 -1.068052
## Salmonella_enterica -0.5630302 -1.068052
## Superficieibacter_electus -0.5630302 -1.068052
## Pseudomonas_fluorescens -0.5630302 -1.068052
## Saccharomyces_cerevisiae -0.5630302 -1.068052
## S._cerevisiae x S._kudriavzevii -0.5630302 -1.068052
## Saccharomyces_kudriavzevii -0.5630302 -1.068052
## Cryptococcus_gattii_VGI -0.5630302 -1.068052
## Cryptococcus_gattii_VGII -0.5630302 -1.068052
## Cryptococcus_gattii_VGIII -0.5630302 -1.068052
## Cryptococcus_neoformans -0.5630302 -1.068052
## Listeria_marthii -0.5630302 -1.068052
## Erwinia_persicina -0.5630302 -1.068052
## Pseudomonas_formosensis -0.5630302 -1.068052
## Pseudomonas_putida -0.5630302 -1.068052
## NS_26_c_benzonase NS_26_b_lyPMA
## Actinobaculum_sp_oral_taxon_183 -0.3581126 -0.2485715
## Actinomyces_georgiae -0.3581126 -0.2485715
## Actinomyces_graevenitzii -0.3581126 -0.2485715
## Actinomyces_hongkongensis -0.3581126 -0.2485715
## Actinomyces_johnsonii -0.3581126 -0.2485715
## Actinomyces_massiliensis -0.3581126 -0.2485715
## Actinomyces_meyeri -0.3581126 -0.2485715
## Actinomyces_naeslundii -0.3581126 -0.2485715
## Actinomyces_odontolyticus -0.3581126 -0.2485715
## Actinomyces_oris -0.3581126 -0.2485715
## Actinomyces_sp_HMSC035G02 -0.3581126 -0.2485715
## Actinomyces_sp_HPA0247 -0.3581126 -0.2485715
## Actinomyces_sp_ICM47 -0.3581126 -0.2485715
## Actinomyces_sp_S6_Spd3 -0.3581126 -0.2485715
## Actinomyces_sp_oral_taxon_170 -0.3581126 -0.2485715
## Actinomyces_sp_oral_taxon_180 -0.3581126 -0.2485715
## Actinomyces_sp_oral_taxon_181 -0.3581126 -0.2485715
## Actinomyces_sp_oral_taxon_414 -0.3581126 -0.2485715
## Actinomyces_sp_oral_taxon_448 -0.3581126 -0.2485715
## Actinomyces_sp_oral_taxon_897 -0.3581126 -0.2485715
## Actinomyces_viscosus -0.3581126 -0.2485715
## Aeriscardovia_aeriphila -0.3581126 -0.2485715
## Alloscardovia_omnicolens -0.3581126 -0.2485715
## Bifidobacterium_dentium -0.3581126 -0.2485715
## Bifidobacterium_longum -0.3581126 -0.2485715
## Scardovia_wiggsiae -0.3581126 -0.2485715
## Corynebacterium_accolens 13.2956376 10.9919546
## Corynebacterium_atypicum 5.4998206 -0.2485715
## Corynebacterium_durum -0.3581126 -0.2485715
## Corynebacterium_matruchotii -0.3581126 -0.2485715
## Corynebacterium_pseudodiphtheriticum 10.7692533 -0.2485715
## Corynebacterium_pseudogenitalium -0.3581126 -0.2485715
## Corynebacterium_tuberculostearicum -0.3581126 -0.2485715
## Rothia_aeria -0.3581126 -0.2485715
## Rothia_dentocariosa -0.3581126 -0.2485715
## Rothia_mucilaginosa -0.3581126 -0.2485715
## Cutibacterium_acnes 10.9807571 9.8789393
## Cutibacterium_granulosum -0.3581126 -0.2485715
## Propionibacterium_humerusii -0.3581126 -0.2485715
## Propionibacterium_namnetense -0.3581126 -0.2485715
## Propionibacterium_acidifaciens -0.3581126 -0.2485715
## Pseudopropionibacterium_propionicum -0.3581126 -0.2485715
## Atopobium_deltae -0.3581126 -0.2485715
## Atopobium_parvulum -0.3581126 -0.2485715
## Atopobium_rimae -0.3581126 -0.2485715
## Olsenella_profusa -0.3581126 -0.2485715
## Olsenella_scatoligenes -0.3581126 -0.2485715
## Olsenella_uli -0.3581126 -0.2485715
## Collinsella_aerofaciens -0.3581126 -0.2485715
## Collinsella_intestinalis -0.3581126 -0.2485715
## Collinsella_stercoris -0.3581126 -0.2485715
## Enorma_massiliensis -0.3581126 -0.2485715
## [Collinsella]_massiliensis -0.3581126 -0.2485715
## Asaccharobacter_celatus -0.3581126 -0.2485715
## Denitrobacterium_detoxificans -0.3581126 -0.2485715
## Enterorhabdus_caecimuris -0.3581126 -0.2485715
## Slackia_exigua -0.3581126 -0.2485715
## Slackia_isoflavoniconvertens -0.3581126 -0.2485715
## Rubrobacter_radiotolerans -0.3581126 -0.2485715
## Thermoleophilum_album -0.3581126 -0.2485715
## Porphyromonas_endodontalis -0.3581126 -0.2485715
## Porphyromonas_somerae -0.3581126 -0.2485715
## Prevotella_histicola -0.3581126 -0.2485715
## Prevotella_melaninogenica -0.3581126 -0.2485715
## Prevotella_oris -0.3581126 -0.2485715
## Kouleothrix_aurantiaca -0.3581126 -0.2485715
## Hydrogenibacillus_schlegelii -0.3581126 -0.2485715
## Gemella_asaccharolytica -0.3581126 -0.2485715
## Gemella_bergeri -0.3581126 -0.2485715
## Gemella_haemolysans -0.3581126 -0.2485715
## Gemella_morbillorum -0.3581126 -0.2485715
## Gemella_sanguinis -0.3581126 -0.2485715
## Brochothrix_campestris -0.3581126 -0.2485715
## Staphylococcus_argenteus -0.3581126 -0.2485715
## Staphylococcus_aureus -0.3581126 -0.2485715
## Staphylococcus_epidermidis 8.5796313 -0.2485715
## Staphylococcus_schweitzeri -0.3581126 -0.2485715
## Abiotrophia_defectiva -0.3581126 -0.2485715
## Abiotrophia_sp_HMSC24B09 -0.3581126 -0.2485715
## Dolosigranulum_pigrum 11.5011152 9.8362371
## Granulicatella_adiacens -0.3581126 -0.2485715
## Granulicatella_elegans -0.3581126 -0.2485715
## Enterococcus_faecalis -0.3581126 -0.2485715
## Lactobacillus_rhamnosus -0.3581126 -0.2485715
## Streptococcus_anginosus -0.3581126 -0.2485715
## Streptococcus_australis -0.3581126 -0.2485715
## Streptococcus_cristatus -0.3581126 -0.2485715
## Streptococcus_gordonii -0.3581126 -0.2485715
## Streptococcus_infantis -0.3581126 -0.2485715
## Streptococcus_milleri -0.3581126 -0.2485715
## Streptococcus_mitis -0.3581126 -0.2485715
## Streptococcus_oralis -0.3581126 -0.2485715
## Streptococcus_parasanguinis -0.3581126 -0.2485715
## Streptococcus_peroris -0.3581126 -0.2485715
## Streptococcus_pneumoniae -0.3581126 -0.2485715
## Streptococcus_pseudopneumoniae -0.3581126 -0.2485715
## Streptococcus_salivarius -0.3581126 -0.2485715
## Streptococcus_sanguinis -0.3581126 -0.2485715
## Streptococcus_sp_A12 -0.3581126 -0.2485715
## Streptococcus_sp_F0442 -0.3581126 -0.2485715
## Streptococcus_sp_HMSC034E03 -0.3581126 -0.2485715
## Streptococcus_sp_HMSC067H01 -0.3581126 -0.2485715
## Streptococcus_sp_HMSC071D03 -0.3581126 -0.2485715
## Streptococcus_sp_HPH0090 -0.3581126 -0.2485715
## Streptococcus_sp_M334 -0.3581126 -0.2485715
## Streptococcus_vestibularis -0.3581126 -0.2485715
## Eubacterium_brachy -0.3581126 -0.2485715
## Eubacterium_infirmum -0.3581126 -0.2485715
## Eubacterium_nodatum -0.3581126 -0.2485715
## Eubacterium_sulci -0.3581126 -0.2485715
## Mogibacterium_diversum -0.3581126 -0.2485715
## Mogibacterium_pumilum -0.3581126 -0.2485715
## Mogibacterium_timidum -0.3581126 -0.2485715
## Lachnoanaerobaculum_saburreum -0.3581126 -0.2485715
## Oribacterium_parvum -0.3581126 -0.2485715
## Oribacterium_sinus -0.3581126 -0.2485715
## Oribacterium_sp_oral_taxon_078 -0.3581126 -0.2485715
## Stomatobaculum_longum -0.3581126 -0.2485715
## Peptostreptococcus_stomatis -0.3581126 -0.2485715
## Bulleidia_extructa -0.3581126 -0.2485715
## Solobacterium_moorei -0.3581126 -0.2485715
## Limnochorda_pilosa -0.3581126 -0.2485715
## Veillonella_atypica -0.3581126 -0.2485715
## Veillonella_dispar -0.3581126 -0.2485715
## Veillonella_infantium -0.3581126 -0.2485715
## Veillonella_parvula -0.3581126 -0.2485715
## Veillonella_sp_T11011_6 -0.3581126 -0.2485715
## Anaerococcus_nagyae -0.3581126 -0.2485715
## Finegoldia_magna -0.3581126 -0.2485715
## Parvimonas_micra -0.3581126 -0.2485715
## Parvimonas_sp_oral_taxon_110 -0.3581126 -0.2485715
## Parvimonas_sp_oral_taxon_393 -0.3581126 -0.2485715
## Fusobacterium_nucleatum -0.3581126 -0.2485715
## Leptotrichia_wadei -0.3581126 -0.2485715
## Gemmata_obscuriglobus -0.3581126 -0.2485715
## Paludisphaera_borealis -0.3581126 -0.2485715
## Achromobacter_xylosoxidans -0.3581126 -0.2485715
## Cupriavidus_sp 9.5638532 12.0852918
## Sutterella_parvirubra -0.3581126 6.4247265
## Anaerobiospirillum_thomasii -0.3581126 -0.2485715
## Cardiobacterium_hominis -0.3581126 -0.2485715
## Cardiobacterium_valvarum -0.3581126 -0.2485715
## Alkalilimnicola_ehrlichii -0.3581126 -0.2485715
## Escherichia_coli -0.3581126 -0.2485715
## Thiohalorhabdus_denitrificans -0.3581126 -0.2485715
## Pseudomonas_aeruginosa -0.3581126 -0.2485715
## Acholeplasma_oculi -0.3581126 -0.2485715
## Candida_albicans -0.3581126 -0.2485715
## Candida_dubliniensis -0.3581126 -0.2485715
## Candida_parapsilosis -0.3581126 -0.2485715
## Malassezia_restricta -0.3581126 -0.2485715
## Nakamurella_silvestris -0.3581126 -0.2485715
## Alloprevotella_tannerae -0.3581126 -0.2485715
## Prevotella_jejuni -0.3581126 -0.2485715
## Prevotella_pallens -0.3581126 -0.2485715
## Prevotella_salivae -0.3581126 -0.2485715
## Prevotella_sp_oral_taxon_306 -0.3581126 -0.2485715
## Prevotella_veroralis -0.3581126 -0.2485715
## Tannerella_sp_oral_taxon_808 -0.3581126 -0.2485715
## Tannerella_sp_oral_taxon_HOT_286 -0.3581126 -0.2485715
## Capnocytophaga_gingivalis -0.3581126 -0.2485715
## Bacillus_ginsengihumi -0.3581126 -0.2485715
## Listeria_floridensis -0.3581126 -0.2485715
## Agitococcus_lubricus -0.3581126 -0.2485715
## Lactobacillus_fermentum -0.3581126 -0.2485715
## Lactobacillus_gasseri -0.3581126 -0.2485715
## Sharpea_azabuensis -0.3581126 -0.2485715
## Streptococcus_mutans -0.3581126 -0.2485715
## Oribacterium_asaccharolyticum -0.3581126 -0.2485715
## Megasphaera_micronuciformis -0.3581126 -0.2485715
## Neisseria_flavescens -0.3581126 -0.2485715
## Neisseria_subflava -0.3581126 -0.2485715
## Stenotrophomonas_maltophilia -0.3581126 -0.2485715
## Stenotrophomonas_pavanii -0.3581126 -0.2485715
## Stenotrophomonas_rhizophila -0.3581126 -0.2485715
## Bacillus_intestinalis -0.3581126 -0.2485715
## Listeria_innocua -0.3581126 -0.2485715
## Listeria_monocytogenes -0.3581126 -0.2485715
## Staphylococcus_haemolyticus -0.3581126 -0.2485715
## Streptococcus_sobrinus -0.3581126 -0.2485715
## Eggerthia_catenaformis -0.3581126 -0.2485715
## Leptotrichia_sp_oral_taxon_498 -0.3581126 -0.2485715
## Rickettsia_felis -0.3581126 -0.2485715
## Haemophilus_parainfluenzae -0.3581126 -0.2485715
## Candida_orthopsilosis -0.3581126 -0.2485715
## Nannocystis_exedens -0.3581126 -0.2485715
## Campylobacter_concisus -0.3581126 -0.2485715
## Franconibacter_helveticus -0.3581126 -0.2485715
## Klebsiella_pneumoniae -0.3581126 -0.2485715
## Salmonella_enterica -0.3581126 -0.2485715
## Superficieibacter_electus -0.3581126 -0.2485715
## Pseudomonas_fluorescens -0.3581126 -0.2485715
## Saccharomyces_cerevisiae -0.3581126 -0.2485715
## S._cerevisiae x S._kudriavzevii -0.3581126 -0.2485715
## Saccharomyces_kudriavzevii -0.3581126 -0.2485715
## Cryptococcus_gattii_VGI -0.3581126 -0.2485715
## Cryptococcus_gattii_VGII -0.3581126 -0.2485715
## Cryptococcus_gattii_VGIII -0.3581126 -0.2485715
## Cryptococcus_neoformans -0.3581126 -0.2485715
## Listeria_marthii -0.3581126 -0.2485715
## Erwinia_persicina -0.3581126 -0.2485715
## Pseudomonas_formosensis -0.3581126 -0.2485715
## Pseudomonas_putida -0.3581126 -0.2485715
## NS_26_a_control NS_23_d_molysis
## Actinobaculum_sp_oral_taxon_183 -0.5345495 -0.4673792
## Actinomyces_georgiae -0.5345495 -0.4673792
## Actinomyces_graevenitzii -0.5345495 -0.4673792
## Actinomyces_hongkongensis -0.5345495 -0.4673792
## Actinomyces_johnsonii -0.5345495 -0.4673792
## Actinomyces_massiliensis -0.5345495 -0.4673792
## Actinomyces_meyeri -0.5345495 -0.4673792
## Actinomyces_naeslundii -0.5345495 -0.4673792
## Actinomyces_odontolyticus -0.5345495 -0.4673792
## Actinomyces_oris 4.4490571 -0.4673792
## Actinomyces_sp_HMSC035G02 -0.5345495 -0.4673792
## Actinomyces_sp_HPA0247 -0.5345495 -0.4673792
## Actinomyces_sp_ICM47 -0.5345495 -0.4673792
## Actinomyces_sp_S6_Spd3 -0.5345495 -0.4673792
## Actinomyces_sp_oral_taxon_170 -0.5345495 -0.4673792
## Actinomyces_sp_oral_taxon_180 -0.5345495 -0.4673792
## Actinomyces_sp_oral_taxon_181 -0.5345495 -0.4673792
## Actinomyces_sp_oral_taxon_414 -0.5345495 -0.4673792
## Actinomyces_sp_oral_taxon_448 -0.5345495 -0.4673792
## Actinomyces_sp_oral_taxon_897 -0.5345495 -0.4673792
## Actinomyces_viscosus -0.5345495 -0.4673792
## Aeriscardovia_aeriphila -0.5345495 -0.4673792
## Alloscardovia_omnicolens -0.5345495 -0.4673792
## Bifidobacterium_dentium -0.5345495 -0.4673792
## Bifidobacterium_longum -0.5345495 -0.4673792
## Scardovia_wiggsiae -0.5345495 -0.4673792
## Corynebacterium_accolens 15.3685741 12.6191020
## Corynebacterium_atypicum 7.2339838 -0.4673792
## Corynebacterium_durum -0.5345495 -0.4673792
## Corynebacterium_matruchotii -0.5345495 -0.4673792
## Corynebacterium_pseudodiphtheriticum 9.6916373 -0.4673792
## Corynebacterium_pseudogenitalium -0.5345495 7.0566422
## Corynebacterium_tuberculostearicum -0.5345495 -0.4673792
## Rothia_aeria -0.5345495 -0.4673792
## Rothia_dentocariosa -0.5345495 -0.4673792
## Rothia_mucilaginosa -0.5345495 4.3033054
## Cutibacterium_acnes 11.3758559 12.8719632
## Cutibacterium_granulosum 9.0428616 -0.4673792
## Propionibacterium_humerusii -0.5345495 4.6202171
## Propionibacterium_namnetense 4.2276244 -0.4673792
## Propionibacterium_acidifaciens -0.5345495 -0.4673792
## Pseudopropionibacterium_propionicum -0.5345495 -0.4673792
## Atopobium_deltae -0.5345495 -0.4673792
## Atopobium_parvulum -0.5345495 -0.4673792
## Atopobium_rimae -0.5345495 -0.4673792
## Olsenella_profusa -0.5345495 -0.4673792
## Olsenella_scatoligenes -0.5345495 -0.4673792
## Olsenella_uli -0.5345495 -0.4673792
## Collinsella_aerofaciens -0.5345495 -0.4673792
## Collinsella_intestinalis -0.5345495 -0.4673792
## Collinsella_stercoris -0.5345495 -0.4673792
## Enorma_massiliensis -0.5345495 -0.4673792
## [Collinsella]_massiliensis -0.5345495 -0.4673792
## Asaccharobacter_celatus -0.5345495 -0.4673792
## Denitrobacterium_detoxificans -0.5345495 -0.4673792
## Enterorhabdus_caecimuris -0.5345495 -0.4673792
## Slackia_exigua -0.5345495 -0.4673792
## Slackia_isoflavoniconvertens 3.7829386 -0.4673792
## Rubrobacter_radiotolerans -0.5345495 -0.4673792
## Thermoleophilum_album -0.5345495 -0.4673792
## Porphyromonas_endodontalis -0.5345495 -0.4673792
## Porphyromonas_somerae -0.5345495 -0.4673792
## Prevotella_histicola -0.5345495 -0.4673792
## Prevotella_melaninogenica -0.5345495 -0.4673792
## Prevotella_oris -0.5345495 -0.4673792
## Kouleothrix_aurantiaca -0.5345495 -0.4673792
## Hydrogenibacillus_schlegelii -0.5345495 -0.4673792
## Gemella_asaccharolytica -0.5345495 -0.4673792
## Gemella_bergeri -0.5345495 -0.4673792
## Gemella_haemolysans -0.5345495 4.2862110
## Gemella_morbillorum -0.5345495 -0.4673792
## Gemella_sanguinis -0.5345495 -0.4673792
## Brochothrix_campestris -0.5345495 -0.4673792
## Staphylococcus_argenteus -0.5345495 -0.4673792
## Staphylococcus_aureus -0.5345495 -0.4673792
## Staphylococcus_epidermidis 8.9457417 9.1779203
## Staphylococcus_schweitzeri -0.5345495 -0.4673792
## Abiotrophia_defectiva -0.5345495 -0.4673792
## Abiotrophia_sp_HMSC24B09 -0.5345495 -0.4673792
## Dolosigranulum_pigrum 10.6338413 11.5264156
## Granulicatella_adiacens -0.5345495 -0.4673792
## Granulicatella_elegans -0.5345495 -0.4673792
## Enterococcus_faecalis -0.5345495 -0.4673792
## Lactobacillus_rhamnosus -0.5345495 -0.4673792
## Streptococcus_anginosus -0.5345495 -0.4673792
## Streptococcus_australis -0.5345495 -0.4673792
## Streptococcus_cristatus -0.5345495 -0.4673792
## Streptococcus_gordonii -0.5345495 -0.4673792
## Streptococcus_infantis -0.5345495 -0.4673792
## Streptococcus_milleri -0.5345495 -0.4673792
## Streptococcus_mitis -0.5345495 -0.4673792
## Streptococcus_oralis -0.5345495 5.9987655
## Streptococcus_parasanguinis -0.5345495 -0.4673792
## Streptococcus_peroris -0.5345495 -0.4673792
## Streptococcus_pneumoniae -0.5345495 -0.4673792
## Streptococcus_pseudopneumoniae -0.5345495 -0.4673792
## Streptococcus_salivarius -0.5345495 -0.4673792
## Streptococcus_sanguinis -0.5345495 -0.4673792
## Streptococcus_sp_A12 -0.5345495 -0.4673792
## Streptococcus_sp_F0442 -0.5345495 -0.4673792
## Streptococcus_sp_HMSC034E03 -0.5345495 -0.4673792
## Streptococcus_sp_HMSC067H01 -0.5345495 -0.4673792
## Streptococcus_sp_HMSC071D03 -0.5345495 -0.4673792
## Streptococcus_sp_HPH0090 -0.5345495 -0.4673792
## Streptococcus_sp_M334 -0.5345495 -0.4673792
## Streptococcus_vestibularis -0.5345495 -0.4673792
## Eubacterium_brachy -0.5345495 -0.4673792
## Eubacterium_infirmum -0.5345495 -0.4673792
## Eubacterium_nodatum -0.5345495 -0.4673792
## Eubacterium_sulci -0.5345495 -0.4673792
## Mogibacterium_diversum -0.5345495 -0.4673792
## Mogibacterium_pumilum -0.5345495 -0.4673792
## Mogibacterium_timidum -0.5345495 -0.4673792
## Lachnoanaerobaculum_saburreum -0.5345495 -0.4673792
## Oribacterium_parvum -0.5345495 -0.4673792
## Oribacterium_sinus -0.5345495 -0.4673792
## Oribacterium_sp_oral_taxon_078 -0.5345495 -0.4673792
## Stomatobaculum_longum -0.5345495 -0.4673792
## Peptostreptococcus_stomatis -0.5345495 -0.4673792
## Bulleidia_extructa -0.5345495 -0.4673792
## Solobacterium_moorei -0.5345495 -0.4673792
## Limnochorda_pilosa -0.5345495 -0.4673792
## Veillonella_atypica -0.5345495 -0.4673792
## Veillonella_dispar -0.5345495 -0.4673792
## Veillonella_infantium -0.5345495 -0.4673792
## Veillonella_parvula -0.5345495 -0.4673792
## Veillonella_sp_T11011_6 -0.5345495 -0.4673792
## Anaerococcus_nagyae -0.5345495 -0.4673792
## Finegoldia_magna -0.5345495 -0.4673792
## Parvimonas_micra -0.5345495 -0.4673792
## Parvimonas_sp_oral_taxon_110 -0.5345495 -0.4673792
## Parvimonas_sp_oral_taxon_393 -0.5345495 -0.4673792
## Fusobacterium_nucleatum -0.5345495 -0.4673792
## Leptotrichia_wadei -0.5345495 -0.4673792
## Gemmata_obscuriglobus -0.5345495 -0.4673792
## Paludisphaera_borealis -0.5345495 -0.4673792
## Achromobacter_xylosoxidans -0.5345495 -0.4673792
## Cupriavidus_sp 10.2446359 11.4319101
## Sutterella_parvirubra -0.5345495 5.8443556
## Anaerobiospirillum_thomasii -0.5345495 -0.4673792
## Cardiobacterium_hominis -0.5345495 -0.4673792
## Cardiobacterium_valvarum -0.5345495 -0.4673792
## Alkalilimnicola_ehrlichii -0.5345495 -0.4673792
## Escherichia_coli -0.5345495 -0.4673792
## Thiohalorhabdus_denitrificans -0.5345495 -0.4673792
## Pseudomonas_aeruginosa -0.5345495 -0.4673792
## Acholeplasma_oculi -0.5345495 -0.4673792
## Candida_albicans -0.5345495 -0.4673792
## Candida_dubliniensis -0.5345495 -0.4673792
## Candida_parapsilosis -0.5345495 -0.4673792
## Malassezia_restricta 7.1022026 -0.4673792
## Nakamurella_silvestris -0.5345495 -0.4673792
## Alloprevotella_tannerae -0.5345495 -0.4673792
## Prevotella_jejuni -0.5345495 -0.4673792
## Prevotella_pallens -0.5345495 -0.4673792
## Prevotella_salivae -0.5345495 -0.4673792
## Prevotella_sp_oral_taxon_306 -0.5345495 -0.4673792
## Prevotella_veroralis -0.5345495 -0.4673792
## Tannerella_sp_oral_taxon_808 -0.5345495 -0.4673792
## Tannerella_sp_oral_taxon_HOT_286 -0.5345495 -0.4673792
## Capnocytophaga_gingivalis -0.5345495 -0.4673792
## Bacillus_ginsengihumi -0.5345495 -0.4673792
## Listeria_floridensis -0.5345495 -0.4673792
## Agitococcus_lubricus -0.5345495 -0.4673792
## Lactobacillus_fermentum -0.5345495 -0.4673792
## Lactobacillus_gasseri -0.5345495 -0.4673792
## Sharpea_azabuensis -0.5345495 -0.4673792
## Streptococcus_mutans -0.5345495 -0.4673792
## Oribacterium_asaccharolyticum -0.5345495 -0.4673792
## Megasphaera_micronuciformis -0.5345495 -0.4673792
## Neisseria_flavescens -0.5345495 -0.4673792
## Neisseria_subflava -0.5345495 -0.4673792
## Stenotrophomonas_maltophilia -0.5345495 -0.4673792
## Stenotrophomonas_pavanii -0.5345495 -0.4673792
## Stenotrophomonas_rhizophila -0.5345495 -0.4673792
## Bacillus_intestinalis -0.5345495 -0.4673792
## Listeria_innocua -0.5345495 -0.4673792
## Listeria_monocytogenes -0.5345495 -0.4673792
## Staphylococcus_haemolyticus -0.5345495 -0.4673792
## Streptococcus_sobrinus -0.5345495 -0.4673792
## Eggerthia_catenaformis -0.5345495 -0.4673792
## Leptotrichia_sp_oral_taxon_498 -0.5345495 -0.4673792
## Rickettsia_felis -0.5345495 -0.4673792
## Haemophilus_parainfluenzae -0.5345495 -0.4673792
## Candida_orthopsilosis -0.5345495 -0.4673792
## Nannocystis_exedens -0.5345495 -0.4673792
## Campylobacter_concisus -0.5345495 -0.4673792
## Franconibacter_helveticus -0.5345495 -0.4673792
## Klebsiella_pneumoniae -0.5345495 -0.4673792
## Salmonella_enterica -0.5345495 -0.4673792
## Superficieibacter_electus -0.5345495 -0.4673792
## Pseudomonas_fluorescens -0.5345495 -0.4673792
## Saccharomyces_cerevisiae -0.5345495 -0.4673792
## S._cerevisiae x S._kudriavzevii -0.5345495 -0.4673792
## Saccharomyces_kudriavzevii -0.5345495 -0.4673792
## Cryptococcus_gattii_VGI -0.5345495 -0.4673792
## Cryptococcus_gattii_VGII -0.5345495 -0.4673792
## Cryptococcus_gattii_VGIII -0.5345495 -0.4673792
## Cryptococcus_neoformans -0.5345495 -0.4673792
## Listeria_marthii -0.5345495 -0.4673792
## Erwinia_persicina -0.5345495 -0.4673792
## Pseudomonas_formosensis -0.5345495 -0.4673792
## Pseudomonas_putida -0.5345495 -0.4673792
## NS_23_c_benzonase NS_23_b_host_zero
## Actinobaculum_sp_oral_taxon_183 -0.3582227 -0.8173795
## Actinomyces_georgiae -0.3582227 -0.8173795
## Actinomyces_graevenitzii -0.3582227 -0.8173795
## Actinomyces_hongkongensis -0.3582227 -0.8173795
## Actinomyces_johnsonii -0.3582227 -0.8173795
## Actinomyces_massiliensis -0.3582227 -0.8173795
## Actinomyces_meyeri -0.3582227 -0.8173795
## Actinomyces_naeslundii -0.3582227 -0.8173795
## Actinomyces_odontolyticus -0.3582227 -0.8173795
## Actinomyces_oris -0.3582227 -0.8173795
## Actinomyces_sp_HMSC035G02 -0.3582227 -0.8173795
## Actinomyces_sp_HPA0247 -0.3582227 -0.8173795
## Actinomyces_sp_ICM47 -0.3582227 -0.8173795
## Actinomyces_sp_S6_Spd3 -0.3582227 -0.8173795
## Actinomyces_sp_oral_taxon_170 -0.3582227 -0.8173795
## Actinomyces_sp_oral_taxon_180 -0.3582227 -0.8173795
## Actinomyces_sp_oral_taxon_181 -0.3582227 -0.8173795
## Actinomyces_sp_oral_taxon_414 -0.3582227 -0.8173795
## Actinomyces_sp_oral_taxon_448 -0.3582227 -0.8173795
## Actinomyces_sp_oral_taxon_897 -0.3582227 -0.8173795
## Actinomyces_viscosus -0.3582227 -0.8173795
## Aeriscardovia_aeriphila -0.3582227 3.6369678
## Alloscardovia_omnicolens -0.3582227 -0.8173795
## Bifidobacterium_dentium -0.3582227 -0.8173795
## Bifidobacterium_longum -0.3582227 -0.8173795
## Scardovia_wiggsiae -0.3582227 -0.8173795
## Corynebacterium_accolens 13.0634435 14.5786072
## Corynebacterium_atypicum 4.7834409 6.4466506
## Corynebacterium_durum -0.3582227 -0.8173795
## Corynebacterium_matruchotii -0.3582227 -0.8173795
## Corynebacterium_pseudodiphtheriticum -0.3582227 -0.8173795
## Corynebacterium_pseudogenitalium 7.3201037 8.1920679
## Corynebacterium_tuberculostearicum -0.3582227 -0.8173795
## Rothia_aeria -0.3582227 -0.8173795
## Rothia_dentocariosa -0.3582227 -0.8173795
## Rothia_mucilaginosa -0.3582227 3.1338642
## Cutibacterium_acnes 12.4424357 14.6335086
## Cutibacterium_granulosum -0.3582227 -0.8173795
## Propionibacterium_humerusii -0.3582227 6.6935982
## Propionibacterium_namnetense -0.3582227 5.2625537
## Propionibacterium_acidifaciens -0.3582227 -0.8173795
## Pseudopropionibacterium_propionicum -0.3582227 -0.8173795
## Atopobium_deltae -0.3582227 -0.8173795
## Atopobium_parvulum -0.3582227 -0.8173795
## Atopobium_rimae -0.3582227 -0.8173795
## Olsenella_profusa -0.3582227 -0.8173795
## Olsenella_scatoligenes -0.3582227 -0.8173795
## Olsenella_uli -0.3582227 -0.8173795
## Collinsella_aerofaciens -0.3582227 -0.8173795
## Collinsella_intestinalis -0.3582227 -0.8173795
## Collinsella_stercoris -0.3582227 -0.8173795
## Enorma_massiliensis -0.3582227 -0.8173795
## [Collinsella]_massiliensis -0.3582227 2.9438206
## Asaccharobacter_celatus -0.3582227 -0.8173795
## Denitrobacterium_detoxificans -0.3582227 -0.8173795
## Enterorhabdus_caecimuris -0.3582227 -0.8173795
## Slackia_exigua -0.3582227 -0.8173795
## Slackia_isoflavoniconvertens -0.3582227 -0.8173795
## Rubrobacter_radiotolerans -0.3582227 -0.8173795
## Thermoleophilum_album -0.3582227 -0.8173795
## Porphyromonas_endodontalis -0.3582227 -0.8173795
## Porphyromonas_somerae -0.3582227 -0.8173795
## Prevotella_histicola -0.3582227 -0.8173795
## Prevotella_melaninogenica -0.3582227 -0.8173795
## Prevotella_oris -0.3582227 -0.8173795
## Kouleothrix_aurantiaca -0.3582227 -0.8173795
## Hydrogenibacillus_schlegelii -0.3582227 -0.8173795
## Gemella_asaccharolytica -0.3582227 -0.8173795
## Gemella_bergeri -0.3582227 -0.8173795
## Gemella_haemolysans -0.3582227 5.7236505
## Gemella_morbillorum -0.3582227 -0.8173795
## Gemella_sanguinis -0.3582227 4.5485965
## Brochothrix_campestris -0.3582227 -0.8173795
## Staphylococcus_argenteus -0.3582227 -0.8173795
## Staphylococcus_aureus -0.3582227 -0.8173795
## Staphylococcus_epidermidis 9.6787900 12.1538818
## Staphylococcus_schweitzeri -0.3582227 -0.8173795
## Abiotrophia_defectiva -0.3582227 -0.8173795
## Abiotrophia_sp_HMSC24B09 -0.3582227 -0.8173795
## Dolosigranulum_pigrum 12.2157136 16.5198123
## Granulicatella_adiacens -0.3582227 -0.8173795
## Granulicatella_elegans -0.3582227 -0.8173795
## Enterococcus_faecalis -0.3582227 -0.8173795
## Lactobacillus_rhamnosus -0.3582227 -0.8173795
## Streptococcus_anginosus -0.3582227 -0.8173795
## Streptococcus_australis -0.3582227 -0.8173795
## Streptococcus_cristatus -0.3582227 -0.8173795
## Streptococcus_gordonii -0.3582227 -0.8173795
## Streptococcus_infantis -0.3582227 -0.8173795
## Streptococcus_milleri -0.3582227 -0.8173795
## Streptococcus_mitis -0.3582227 6.2541938
## Streptococcus_oralis -0.3582227 7.2535265
## Streptococcus_parasanguinis -0.3582227 -0.8173795
## Streptococcus_peroris -0.3582227 -0.8173795
## Streptococcus_pneumoniae -0.3582227 -0.8173795
## Streptococcus_pseudopneumoniae -0.3582227 -0.8173795
## Streptococcus_salivarius -0.3582227 -0.8173795
## Streptococcus_sanguinis -0.3582227 4.8627931
## Streptococcus_sp_A12 -0.3582227 -0.8173795
## Streptococcus_sp_F0442 -0.3582227 -0.8173795
## Streptococcus_sp_HMSC034E03 -0.3582227 -0.8173795
## Streptococcus_sp_HMSC067H01 -0.3582227 -0.8173795
## Streptococcus_sp_HMSC071D03 -0.3582227 -0.8173795
## Streptococcus_sp_HPH0090 -0.3582227 -0.8173795
## Streptococcus_sp_M334 -0.3582227 -0.8173795
## Streptococcus_vestibularis -0.3582227 -0.8173795
## Eubacterium_brachy -0.3582227 -0.8173795
## Eubacterium_infirmum -0.3582227 -0.8173795
## Eubacterium_nodatum -0.3582227 -0.8173795
## Eubacterium_sulci -0.3582227 -0.8173795
## Mogibacterium_diversum -0.3582227 -0.8173795
## Mogibacterium_pumilum -0.3582227 -0.8173795
## Mogibacterium_timidum -0.3582227 -0.8173795
## Lachnoanaerobaculum_saburreum -0.3582227 -0.8173795
## Oribacterium_parvum -0.3582227 -0.8173795
## Oribacterium_sinus -0.3582227 -0.8173795
## Oribacterium_sp_oral_taxon_078 -0.3582227 -0.8173795
## Stomatobaculum_longum -0.3582227 -0.8173795
## Peptostreptococcus_stomatis -0.3582227 -0.8173795
## Bulleidia_extructa -0.3582227 -0.8173795
## Solobacterium_moorei -0.3582227 -0.8173795
## Limnochorda_pilosa -0.3582227 -0.8173795
## Veillonella_atypica -0.3582227 -0.8173795
## Veillonella_dispar -0.3582227 -0.8173795
## Veillonella_infantium -0.3582227 -0.8173795
## Veillonella_parvula -0.3582227 -0.8173795
## Veillonella_sp_T11011_6 -0.3582227 -0.8173795
## Anaerococcus_nagyae -0.3582227 -0.8173795
## Finegoldia_magna -0.3582227 4.9602728
## Parvimonas_micra -0.3582227 -0.8173795
## Parvimonas_sp_oral_taxon_110 -0.3582227 -0.8173795
## Parvimonas_sp_oral_taxon_393 -0.3582227 -0.8173795
## Fusobacterium_nucleatum -0.3582227 -0.8173795
## Leptotrichia_wadei -0.3582227 -0.8173795
## Gemmata_obscuriglobus -0.3582227 -0.8173795
## Paludisphaera_borealis -0.3582227 -0.8173795
## Achromobacter_xylosoxidans -0.3582227 -0.8173795
## Cupriavidus_sp 10.7077123 11.7265144
## Sutterella_parvirubra -0.3582227 4.9540616
## Anaerobiospirillum_thomasii -0.3582227 -0.8173795
## Cardiobacterium_hominis -0.3582227 -0.8173795
## Cardiobacterium_valvarum -0.3582227 -0.8173795
## Alkalilimnicola_ehrlichii -0.3582227 -0.8173795
## Escherichia_coli -0.3582227 -0.8173795
## Thiohalorhabdus_denitrificans -0.3582227 -0.8173795
## Pseudomonas_aeruginosa -0.3582227 -0.8173795
## Acholeplasma_oculi -0.3582227 -0.8173795
## Candida_albicans -0.3582227 -0.8173795
## Candida_dubliniensis -0.3582227 -0.8173795
## Candida_parapsilosis -0.3582227 -0.8173795
## Malassezia_restricta -0.3582227 5.1015143
## Nakamurella_silvestris -0.3582227 -0.8173795
## Alloprevotella_tannerae -0.3582227 -0.8173795
## Prevotella_jejuni -0.3582227 -0.8173795
## Prevotella_pallens -0.3582227 -0.8173795
## Prevotella_salivae -0.3582227 -0.8173795
## Prevotella_sp_oral_taxon_306 -0.3582227 -0.8173795
## Prevotella_veroralis -0.3582227 -0.8173795
## Tannerella_sp_oral_taxon_808 -0.3582227 -0.8173795
## Tannerella_sp_oral_taxon_HOT_286 -0.3582227 -0.8173795
## Capnocytophaga_gingivalis -0.3582227 -0.8173795
## Bacillus_ginsengihumi -0.3582227 -0.8173795
## Listeria_floridensis -0.3582227 -0.8173795
## Agitococcus_lubricus -0.3582227 -0.8173795
## Lactobacillus_fermentum -0.3582227 -0.8173795
## Lactobacillus_gasseri -0.3582227 -0.8173795
## Sharpea_azabuensis -0.3582227 -0.8173795
## Streptococcus_mutans -0.3582227 -0.8173795
## Oribacterium_asaccharolyticum -0.3582227 -0.8173795
## Megasphaera_micronuciformis -0.3582227 -0.8173795
## Neisseria_flavescens -0.3582227 -0.8173795
## Neisseria_subflava -0.3582227 -0.8173795
## Stenotrophomonas_maltophilia -0.3582227 -0.8173795
## Stenotrophomonas_pavanii -0.3582227 -0.8173795
## Stenotrophomonas_rhizophila -0.3582227 -0.8173795
## Bacillus_intestinalis -0.3582227 -0.8173795
## Listeria_innocua -0.3582227 -0.8173795
## Listeria_monocytogenes -0.3582227 -0.8173795
## Staphylococcus_haemolyticus -0.3582227 -0.8173795
## Streptococcus_sobrinus -0.3582227 -0.8173795
## Eggerthia_catenaformis -0.3582227 -0.8173795
## Leptotrichia_sp_oral_taxon_498 -0.3582227 -0.8173795
## Rickettsia_felis -0.3582227 -0.8173795
## Haemophilus_parainfluenzae -0.3582227 -0.8173795
## Candida_orthopsilosis -0.3582227 -0.8173795
## Nannocystis_exedens -0.3582227 -0.8173795
## Campylobacter_concisus -0.3582227 -0.8173795
## Franconibacter_helveticus -0.3582227 -0.8173795
## Klebsiella_pneumoniae -0.3582227 -0.8173795
## Salmonella_enterica -0.3582227 -0.8173795
## Superficieibacter_electus -0.3582227 -0.8173795
## Pseudomonas_fluorescens -0.3582227 -0.8173795
## Saccharomyces_cerevisiae -0.3582227 -0.8173795
## S._cerevisiae x S._kudriavzevii -0.3582227 -0.8173795
## Saccharomyces_kudriavzevii -0.3582227 -0.8173795
## Cryptococcus_gattii_VGI -0.3582227 -0.8173795
## Cryptococcus_gattii_VGII -0.3582227 -0.8173795
## Cryptococcus_gattii_VGIII -0.3582227 -0.8173795
## Cryptococcus_neoformans -0.3582227 -0.8173795
## Listeria_marthii -0.3582227 -0.8173795
## Erwinia_persicina -0.3582227 -0.8173795
## Pseudomonas_formosensis -0.3582227 -0.8173795
## Pseudomonas_putida -0.3582227 -0.8173795
## NS_23_a_control NS_22_d_molysis
## Actinobaculum_sp_oral_taxon_183 -0.2633861 -0.4115665
## Actinomyces_georgiae -0.2633861 -0.4115665
## Actinomyces_graevenitzii -0.2633861 -0.4115665
## Actinomyces_hongkongensis -0.2633861 -0.4115665
## Actinomyces_johnsonii -0.2633861 -0.4115665
## Actinomyces_massiliensis -0.2633861 -0.4115665
## Actinomyces_meyeri -0.2633861 -0.4115665
## Actinomyces_naeslundii -0.2633861 -0.4115665
## Actinomyces_odontolyticus -0.2633861 -0.4115665
## Actinomyces_oris -0.2633861 -0.4115665
## Actinomyces_sp_HMSC035G02 -0.2633861 -0.4115665
## Actinomyces_sp_HPA0247 -0.2633861 -0.4115665
## Actinomyces_sp_ICM47 -0.2633861 -0.4115665
## Actinomyces_sp_S6_Spd3 -0.2633861 -0.4115665
## Actinomyces_sp_oral_taxon_170 -0.2633861 -0.4115665
## Actinomyces_sp_oral_taxon_180 -0.2633861 -0.4115665
## Actinomyces_sp_oral_taxon_181 -0.2633861 -0.4115665
## Actinomyces_sp_oral_taxon_414 -0.2633861 -0.4115665
## Actinomyces_sp_oral_taxon_448 -0.2633861 -0.4115665
## Actinomyces_sp_oral_taxon_897 -0.2633861 -0.4115665
## Actinomyces_viscosus -0.2633861 -0.4115665
## Aeriscardovia_aeriphila -0.2633861 -0.4115665
## Alloscardovia_omnicolens -0.2633861 -0.4115665
## Bifidobacterium_dentium -0.2633861 -0.4115665
## Bifidobacterium_longum -0.2633861 -0.4115665
## Scardovia_wiggsiae -0.2633861 -0.4115665
## Corynebacterium_accolens 11.0531959 13.7484992
## Corynebacterium_atypicum -0.2633861 6.1662948
## Corynebacterium_durum -0.2633861 -0.4115665
## Corynebacterium_matruchotii -0.2633861 -0.4115665
## Corynebacterium_pseudodiphtheriticum -0.2633861 10.5452570
## Corynebacterium_pseudogenitalium -0.2633861 -0.4115665
## Corynebacterium_tuberculostearicum -0.2633861 -0.4115665
## Rothia_aeria -0.2633861 -0.4115665
## Rothia_dentocariosa -0.2633861 -0.4115665
## Rothia_mucilaginosa -0.2633861 -0.4115665
## Cutibacterium_acnes 10.9147517 12.0863956
## Cutibacterium_granulosum -0.2633861 7.0733638
## Propionibacterium_humerusii -0.2633861 -0.4115665
## Propionibacterium_namnetense -0.2633861 -0.4115665
## Propionibacterium_acidifaciens -0.2633861 -0.4115665
## Pseudopropionibacterium_propionicum -0.2633861 -0.4115665
## Atopobium_deltae -0.2633861 -0.4115665
## Atopobium_parvulum -0.2633861 -0.4115665
## Atopobium_rimae -0.2633861 -0.4115665
## Olsenella_profusa -0.2633861 -0.4115665
## Olsenella_scatoligenes -0.2633861 -0.4115665
## Olsenella_uli -0.2633861 -0.4115665
## Collinsella_aerofaciens -0.2633861 -0.4115665
## Collinsella_intestinalis -0.2633861 -0.4115665
## Collinsella_stercoris -0.2633861 -0.4115665
## Enorma_massiliensis -0.2633861 -0.4115665
## [Collinsella]_massiliensis -0.2633861 -0.4115665
## Asaccharobacter_celatus -0.2633861 -0.4115665
## Denitrobacterium_detoxificans -0.2633861 -0.4115665
## Enterorhabdus_caecimuris -0.2633861 -0.4115665
## Slackia_exigua -0.2633861 -0.4115665
## Slackia_isoflavoniconvertens -0.2633861 -0.4115665
## Rubrobacter_radiotolerans -0.2633861 -0.4115665
## Thermoleophilum_album -0.2633861 -0.4115665
## Porphyromonas_endodontalis -0.2633861 -0.4115665
## Porphyromonas_somerae -0.2633861 -0.4115665
## Prevotella_histicola -0.2633861 -0.4115665
## Prevotella_melaninogenica -0.2633861 -0.4115665
## Prevotella_oris -0.2633861 -0.4115665
## Kouleothrix_aurantiaca -0.2633861 -0.4115665
## Hydrogenibacillus_schlegelii -0.2633861 -0.4115665
## Gemella_asaccharolytica -0.2633861 -0.4115665
## Gemella_bergeri -0.2633861 -0.4115665
## Gemella_haemolysans -0.2633861 -0.4115665
## Gemella_morbillorum -0.2633861 -0.4115665
## Gemella_sanguinis -0.2633861 -0.4115665
## Brochothrix_campestris -0.2633861 -0.4115665
## Staphylococcus_argenteus -0.2633861 -0.4115665
## Staphylococcus_aureus -0.2633861 -0.4115665
## Staphylococcus_epidermidis 9.1360031 8.5078866
## Staphylococcus_schweitzeri -0.2633861 -0.4115665
## Abiotrophia_defectiva -0.2633861 -0.4115665
## Abiotrophia_sp_HMSC24B09 -0.2633861 -0.4115665
## Dolosigranulum_pigrum 12.3215681 10.5202003
## Granulicatella_adiacens -0.2633861 -0.4115665
## Granulicatella_elegans -0.2633861 -0.4115665
## Enterococcus_faecalis -0.2633861 -0.4115665
## Lactobacillus_rhamnosus -0.2633861 -0.4115665
## Streptococcus_anginosus -0.2633861 -0.4115665
## Streptococcus_australis -0.2633861 -0.4115665
## Streptococcus_cristatus -0.2633861 -0.4115665
## Streptococcus_gordonii -0.2633861 -0.4115665
## Streptococcus_infantis -0.2633861 -0.4115665
## Streptococcus_milleri -0.2633861 -0.4115665
## Streptococcus_mitis -0.2633861 -0.4115665
## Streptococcus_oralis -0.2633861 -0.4115665
## Streptococcus_parasanguinis -0.2633861 -0.4115665
## Streptococcus_peroris -0.2633861 -0.4115665
## Streptococcus_pneumoniae -0.2633861 -0.4115665
## Streptococcus_pseudopneumoniae -0.2633861 -0.4115665
## Streptococcus_salivarius -0.2633861 -0.4115665
## Streptococcus_sanguinis -0.2633861 -0.4115665
## Streptococcus_sp_A12 -0.2633861 -0.4115665
## Streptococcus_sp_F0442 -0.2633861 -0.4115665
## Streptococcus_sp_HMSC034E03 -0.2633861 -0.4115665
## Streptococcus_sp_HMSC067H01 -0.2633861 -0.4115665
## Streptococcus_sp_HMSC071D03 -0.2633861 -0.4115665
## Streptococcus_sp_HPH0090 -0.2633861 -0.4115665
## Streptococcus_sp_M334 -0.2633861 -0.4115665
## Streptococcus_vestibularis -0.2633861 -0.4115665
## Eubacterium_brachy -0.2633861 -0.4115665
## Eubacterium_infirmum -0.2633861 -0.4115665
## Eubacterium_nodatum -0.2633861 -0.4115665
## Eubacterium_sulci -0.2633861 -0.4115665
## Mogibacterium_diversum -0.2633861 -0.4115665
## Mogibacterium_pumilum -0.2633861 -0.4115665
## Mogibacterium_timidum -0.2633861 -0.4115665
## Lachnoanaerobaculum_saburreum -0.2633861 -0.4115665
## Oribacterium_parvum -0.2633861 -0.4115665
## Oribacterium_sinus -0.2633861 -0.4115665
## Oribacterium_sp_oral_taxon_078 -0.2633861 -0.4115665
## Stomatobaculum_longum -0.2633861 -0.4115665
## Peptostreptococcus_stomatis -0.2633861 -0.4115665
## Bulleidia_extructa -0.2633861 -0.4115665
## Solobacterium_moorei -0.2633861 -0.4115665
## Limnochorda_pilosa -0.2633861 -0.4115665
## Veillonella_atypica -0.2633861 -0.4115665
## Veillonella_dispar -0.2633861 -0.4115665
## Veillonella_infantium -0.2633861 -0.4115665
## Veillonella_parvula -0.2633861 -0.4115665
## Veillonella_sp_T11011_6 -0.2633861 -0.4115665
## Anaerococcus_nagyae -0.2633861 -0.4115665
## Finegoldia_magna -0.2633861 -0.4115665
## Parvimonas_micra -0.2633861 -0.4115665
## Parvimonas_sp_oral_taxon_110 -0.2633861 -0.4115665
## Parvimonas_sp_oral_taxon_393 -0.2633861 -0.4115665
## Fusobacterium_nucleatum -0.2633861 -0.4115665
## Leptotrichia_wadei -0.2633861 -0.4115665
## Gemmata_obscuriglobus -0.2633861 -0.4115665
## Paludisphaera_borealis -0.2633861 -0.4115665
## Achromobacter_xylosoxidans -0.2633861 -0.4115665
## Cupriavidus_sp 8.7249351 11.6075740
## Sutterella_parvirubra -0.2633861 -0.4115665
## Anaerobiospirillum_thomasii -0.2633861 -0.4115665
## Cardiobacterium_hominis -0.2633861 -0.4115665
## Cardiobacterium_valvarum -0.2633861 -0.4115665
## Alkalilimnicola_ehrlichii -0.2633861 -0.4115665
## Escherichia_coli -0.2633861 -0.4115665
## Thiohalorhabdus_denitrificans -0.2633861 -0.4115665
## Pseudomonas_aeruginosa -0.2633861 -0.4115665
## Acholeplasma_oculi -0.2633861 -0.4115665
## Candida_albicans -0.2633861 -0.4115665
## Candida_dubliniensis -0.2633861 -0.4115665
## Candida_parapsilosis -0.2633861 -0.4115665
## Malassezia_restricta -0.2633861 -0.4115665
## Nakamurella_silvestris -0.2633861 -0.4115665
## Alloprevotella_tannerae -0.2633861 -0.4115665
## Prevotella_jejuni -0.2633861 -0.4115665
## Prevotella_pallens -0.2633861 -0.4115665
## Prevotella_salivae -0.2633861 -0.4115665
## Prevotella_sp_oral_taxon_306 -0.2633861 -0.4115665
## Prevotella_veroralis -0.2633861 -0.4115665
## Tannerella_sp_oral_taxon_808 -0.2633861 -0.4115665
## Tannerella_sp_oral_taxon_HOT_286 -0.2633861 -0.4115665
## Capnocytophaga_gingivalis -0.2633861 -0.4115665
## Bacillus_ginsengihumi -0.2633861 -0.4115665
## Listeria_floridensis -0.2633861 -0.4115665
## Agitococcus_lubricus -0.2633861 -0.4115665
## Lactobacillus_fermentum -0.2633861 -0.4115665
## Lactobacillus_gasseri -0.2633861 -0.4115665
## Sharpea_azabuensis -0.2633861 -0.4115665
## Streptococcus_mutans -0.2633861 -0.4115665
## Oribacterium_asaccharolyticum -0.2633861 -0.4115665
## Megasphaera_micronuciformis -0.2633861 -0.4115665
## Neisseria_flavescens -0.2633861 -0.4115665
## Neisseria_subflava -0.2633861 -0.4115665
## Stenotrophomonas_maltophilia -0.2633861 -0.4115665
## Stenotrophomonas_pavanii -0.2633861 -0.4115665
## Stenotrophomonas_rhizophila -0.2633861 -0.4115665
## Bacillus_intestinalis -0.2633861 -0.4115665
## Listeria_innocua -0.2633861 -0.4115665
## Listeria_monocytogenes -0.2633861 -0.4115665
## Staphylococcus_haemolyticus -0.2633861 -0.4115665
## Streptococcus_sobrinus -0.2633861 -0.4115665
## Eggerthia_catenaformis -0.2633861 -0.4115665
## Leptotrichia_sp_oral_taxon_498 -0.2633861 -0.4115665
## Rickettsia_felis -0.2633861 -0.4115665
## Haemophilus_parainfluenzae -0.2633861 -0.4115665
## Candida_orthopsilosis -0.2633861 -0.4115665
## Nannocystis_exedens -0.2633861 -0.4115665
## Campylobacter_concisus -0.2633861 -0.4115665
## Franconibacter_helveticus -0.2633861 -0.4115665
## Klebsiella_pneumoniae -0.2633861 -0.4115665
## Salmonella_enterica -0.2633861 -0.4115665
## Superficieibacter_electus -0.2633861 -0.4115665
## Pseudomonas_fluorescens -0.2633861 -0.4115665
## Saccharomyces_cerevisiae -0.2633861 -0.4115665
## S._cerevisiae x S._kudriavzevii -0.2633861 -0.4115665
## Saccharomyces_kudriavzevii -0.2633861 -0.4115665
## Cryptococcus_gattii_VGI -0.2633861 -0.4115665
## Cryptococcus_gattii_VGII -0.2633861 -0.4115665
## Cryptococcus_gattii_VGIII -0.2633861 -0.4115665
## Cryptococcus_neoformans -0.2633861 -0.4115665
## Listeria_marthii -0.2633861 -0.4115665
## Erwinia_persicina -0.2633861 -0.4115665
## Pseudomonas_formosensis -0.2633861 -0.4115665
## Pseudomonas_putida -0.2633861 -0.4115665
## NS_22_c_benzonase NS_22_b_host_zero
## Actinobaculum_sp_oral_taxon_183 -0.6283422 -0.7832283
## Actinomyces_georgiae -0.6283422 -0.7832283
## Actinomyces_graevenitzii -0.6283422 -0.7832283
## Actinomyces_hongkongensis -0.6283422 -0.7832283
## Actinomyces_johnsonii -0.6283422 -0.7832283
## Actinomyces_massiliensis -0.6283422 -0.7832283
## Actinomyces_meyeri -0.6283422 -0.7832283
## Actinomyces_naeslundii -0.6283422 -0.7832283
## Actinomyces_odontolyticus -0.6283422 -0.7832283
## Actinomyces_oris -0.6283422 -0.7832283
## Actinomyces_sp_HMSC035G02 -0.6283422 -0.7832283
## Actinomyces_sp_HPA0247 -0.6283422 -0.7832283
## Actinomyces_sp_ICM47 -0.6283422 -0.7832283
## Actinomyces_sp_S6_Spd3 -0.6283422 -0.7832283
## Actinomyces_sp_oral_taxon_170 -0.6283422 -0.7832283
## Actinomyces_sp_oral_taxon_180 -0.6283422 -0.7832283
## Actinomyces_sp_oral_taxon_181 -0.6283422 -0.7832283
## Actinomyces_sp_oral_taxon_414 -0.6283422 -0.7832283
## Actinomyces_sp_oral_taxon_448 -0.6283422 -0.7832283
## Actinomyces_sp_oral_taxon_897 -0.6283422 -0.7832283
## Actinomyces_viscosus -0.6283422 -0.7832283
## Aeriscardovia_aeriphila 5.9155697 3.6711190
## Alloscardovia_omnicolens -0.6283422 -0.7832283
## Bifidobacterium_dentium -0.6283422 -0.7832283
## Bifidobacterium_longum -0.6283422 -0.7832283
## Scardovia_wiggsiae -0.6283422 -0.7832283
## Corynebacterium_accolens 16.1036358 14.1385644
## Corynebacterium_atypicum 8.3165993 6.6161698
## Corynebacterium_durum -0.6283422 -0.7832283
## Corynebacterium_matruchotii -0.6283422 -0.7832283
## Corynebacterium_pseudodiphtheriticum 10.3723066 11.6208055
## Corynebacterium_pseudogenitalium -0.6283422 6.7134241
## Corynebacterium_tuberculostearicum -0.6283422 -0.7832283
## Rothia_aeria -0.6283422 -0.7832283
## Rothia_dentocariosa -0.6283422 -0.7832283
## Rothia_mucilaginosa -0.6283422 -0.7832283
## Cutibacterium_acnes 11.8288238 12.9757225
## Cutibacterium_granulosum 7.5869348 7.9955596
## Propionibacterium_humerusii -0.6283422 5.0097853
## Propionibacterium_namnetense 4.8354896 6.6044809
## Propionibacterium_acidifaciens -0.6283422 -0.7832283
## Pseudopropionibacterium_propionicum -0.6283422 -0.7832283
## Atopobium_deltae -0.6283422 -0.7832283
## Atopobium_parvulum -0.6283422 -0.7832283
## Atopobium_rimae -0.6283422 -0.7832283
## Olsenella_profusa -0.6283422 -0.7832283
## Olsenella_scatoligenes -0.6283422 -0.7832283
## Olsenella_uli -0.6283422 -0.7832283
## Collinsella_aerofaciens -0.6283422 5.8722121
## Collinsella_intestinalis -0.6283422 3.9352706
## Collinsella_stercoris -0.6283422 -0.7832283
## Enorma_massiliensis -0.6283422 -0.7832283
## [Collinsella]_massiliensis -0.6283422 2.9303438
## Asaccharobacter_celatus -0.6283422 -0.7832283
## Denitrobacterium_detoxificans -0.6283422 -0.7832283
## Enterorhabdus_caecimuris -0.6283422 -0.7832283
## Slackia_exigua -0.6283422 -0.7832283
## Slackia_isoflavoniconvertens 3.7536845 -0.7832283
## Rubrobacter_radiotolerans -0.6283422 -0.7832283
## Thermoleophilum_album 3.7411057 3.5734805
## Porphyromonas_endodontalis -0.6283422 -0.7832283
## Porphyromonas_somerae -0.6283422 -0.7832283
## Prevotella_histicola -0.6283422 -0.7832283
## Prevotella_melaninogenica -0.6283422 -0.7832283
## Prevotella_oris -0.6283422 -0.7832283
## Kouleothrix_aurantiaca -0.6283422 -0.7832283
## Hydrogenibacillus_schlegelii -0.6283422 -0.7832283
## Gemella_asaccharolytica -0.6283422 -0.7832283
## Gemella_bergeri -0.6283422 -0.7832283
## Gemella_haemolysans -0.6283422 -0.7832283
## Gemella_morbillorum -0.6283422 -0.7832283
## Gemella_sanguinis -0.6283422 -0.7832283
## Brochothrix_campestris -0.6283422 -0.7832283
## Staphylococcus_argenteus -0.6283422 -0.7832283
## Staphylococcus_aureus -0.6283422 -0.7832283
## Staphylococcus_epidermidis 9.6695833 10.2452051
## Staphylococcus_schweitzeri -0.6283422 -0.7832283
## Abiotrophia_defectiva -0.6283422 -0.7832283
## Abiotrophia_sp_HMSC24B09 -0.6283422 -0.7832283
## Dolosigranulum_pigrum 11.5552855 12.3294423
## Granulicatella_adiacens -0.6283422 -0.7832283
## Granulicatella_elegans -0.6283422 -0.7832283
## Enterococcus_faecalis -0.6283422 -0.7832283
## Lactobacillus_rhamnosus -0.6283422 -0.7832283
## Streptococcus_anginosus -0.6283422 -0.7832283
## Streptococcus_australis -0.6283422 -0.7832283
## Streptococcus_cristatus -0.6283422 -0.7832283
## Streptococcus_gordonii -0.6283422 -0.7832283
## Streptococcus_infantis -0.6283422 -0.7832283
## Streptococcus_milleri -0.6283422 -0.7832283
## Streptococcus_mitis -0.6283422 -0.7832283
## Streptococcus_oralis -0.6283422 -0.7832283
## Streptococcus_parasanguinis -0.6283422 -0.7832283
## Streptococcus_peroris -0.6283422 -0.7832283
## Streptococcus_pneumoniae -0.6283422 -0.7832283
## Streptococcus_pseudopneumoniae -0.6283422 -0.7832283
## Streptococcus_salivarius -0.6283422 -0.7832283
## Streptococcus_sanguinis -0.6283422 -0.7832283
## Streptococcus_sp_A12 -0.6283422 -0.7832283
## Streptococcus_sp_F0442 -0.6283422 -0.7832283
## Streptococcus_sp_HMSC034E03 -0.6283422 -0.7832283
## Streptococcus_sp_HMSC067H01 -0.6283422 -0.7832283
## Streptococcus_sp_HMSC071D03 -0.6283422 -0.7832283
## Streptococcus_sp_HPH0090 -0.6283422 -0.7832283
## Streptococcus_sp_M334 -0.6283422 -0.7832283
## Streptococcus_vestibularis -0.6283422 -0.7832283
## Eubacterium_brachy -0.6283422 -0.7832283
## Eubacterium_infirmum -0.6283422 -0.7832283
## Eubacterium_nodatum -0.6283422 -0.7832283
## Eubacterium_sulci -0.6283422 -0.7832283
## Mogibacterium_diversum -0.6283422 -0.7832283
## Mogibacterium_pumilum -0.6283422 -0.7832283
## Mogibacterium_timidum -0.6283422 -0.7832283
## Lachnoanaerobaculum_saburreum -0.6283422 -0.7832283
## Oribacterium_parvum -0.6283422 -0.7832283
## Oribacterium_sinus -0.6283422 -0.7832283
## Oribacterium_sp_oral_taxon_078 -0.6283422 -0.7832283
## Stomatobaculum_longum -0.6283422 -0.7832283
## Peptostreptococcus_stomatis -0.6283422 -0.7832283
## Bulleidia_extructa -0.6283422 -0.7832283
## Solobacterium_moorei -0.6283422 -0.7832283
## Limnochorda_pilosa -0.6283422 -0.7832283
## Veillonella_atypica -0.6283422 -0.7832283
## Veillonella_dispar -0.6283422 -0.7832283
## Veillonella_infantium -0.6283422 -0.7832283
## Veillonella_parvula -0.6283422 -0.7832283
## Veillonella_sp_T11011_6 -0.6283422 -0.7832283
## Anaerococcus_nagyae -0.6283422 -0.7832283
## Finegoldia_magna -0.6283422 5.3148460
## Parvimonas_micra -0.6283422 -0.7832283
## Parvimonas_sp_oral_taxon_110 -0.6283422 -0.7832283
## Parvimonas_sp_oral_taxon_393 -0.6283422 -0.7832283
## Fusobacterium_nucleatum -0.6283422 -0.7832283
## Leptotrichia_wadei -0.6283422 -0.7832283
## Gemmata_obscuriglobus 6.5846895 -0.7832283
## Paludisphaera_borealis -0.6283422 -0.7832283
## Achromobacter_xylosoxidans -0.6283422 -0.7832283
## Cupriavidus_sp 12.0008587 11.8572273
## Sutterella_parvirubra 6.4921022 5.9513634
## Anaerobiospirillum_thomasii -0.6283422 -0.7832283
## Cardiobacterium_hominis -0.6283422 -0.7832283
## Cardiobacterium_valvarum -0.6283422 -0.7832283
## Alkalilimnicola_ehrlichii -0.6283422 -0.7832283
## Escherichia_coli -0.6283422 -0.7832283
## Thiohalorhabdus_denitrificans -0.6283422 -0.7832283
## Pseudomonas_aeruginosa -0.6283422 -0.7832283
## Acholeplasma_oculi -0.6283422 -0.7832283
## Candida_albicans -0.6283422 -0.7832283
## Candida_dubliniensis -0.6283422 -0.7832283
## Candida_parapsilosis -0.6283422 -0.7832283
## Malassezia_restricta -0.6283422 6.7589852
## Nakamurella_silvestris -0.6283422 -0.7832283
## Alloprevotella_tannerae -0.6283422 -0.7832283
## Prevotella_jejuni -0.6283422 -0.7832283
## Prevotella_pallens -0.6283422 -0.7832283
## Prevotella_salivae -0.6283422 -0.7832283
## Prevotella_sp_oral_taxon_306 -0.6283422 -0.7832283
## Prevotella_veroralis -0.6283422 -0.7832283
## Tannerella_sp_oral_taxon_808 -0.6283422 -0.7832283
## Tannerella_sp_oral_taxon_HOT_286 -0.6283422 -0.7832283
## Capnocytophaga_gingivalis -0.6283422 -0.7832283
## Bacillus_ginsengihumi -0.6283422 -0.7832283
## Listeria_floridensis -0.6283422 -0.7832283
## Agitococcus_lubricus -0.6283422 -0.7832283
## Lactobacillus_fermentum -0.6283422 -0.7832283
## Lactobacillus_gasseri -0.6283422 -0.7832283
## Sharpea_azabuensis -0.6283422 -0.7832283
## Streptococcus_mutans -0.6283422 -0.7832283
## Oribacterium_asaccharolyticum -0.6283422 -0.7832283
## Megasphaera_micronuciformis -0.6283422 -0.7832283
## Neisseria_flavescens -0.6283422 -0.7832283
## Neisseria_subflava -0.6283422 -0.7832283
## Stenotrophomonas_maltophilia -0.6283422 -0.7832283
## Stenotrophomonas_pavanii -0.6283422 -0.7832283
## Stenotrophomonas_rhizophila -0.6283422 -0.7832283
## Bacillus_intestinalis -0.6283422 -0.7832283
## Listeria_innocua -0.6283422 -0.7832283
## Listeria_monocytogenes -0.6283422 -0.7832283
## Staphylococcus_haemolyticus -0.6283422 -0.7832283
## Streptococcus_sobrinus -0.6283422 -0.7832283
## Eggerthia_catenaformis -0.6283422 -0.7832283
## Leptotrichia_sp_oral_taxon_498 -0.6283422 -0.7832283
## Rickettsia_felis -0.6283422 -0.7832283
## Haemophilus_parainfluenzae -0.6283422 -0.7832283
## Candida_orthopsilosis -0.6283422 -0.7832283
## Nannocystis_exedens -0.6283422 -0.7832283
## Campylobacter_concisus -0.6283422 -0.7832283
## Franconibacter_helveticus -0.6283422 -0.7832283
## Klebsiella_pneumoniae -0.6283422 -0.7832283
## Salmonella_enterica -0.6283422 -0.7832283
## Superficieibacter_electus -0.6283422 -0.7832283
## Pseudomonas_fluorescens -0.6283422 -0.7832283
## Saccharomyces_cerevisiae -0.6283422 -0.7832283
## S._cerevisiae x S._kudriavzevii -0.6283422 -0.7832283
## Saccharomyces_kudriavzevii -0.6283422 -0.7832283
## Cryptococcus_gattii_VGI -0.6283422 -0.7832283
## Cryptococcus_gattii_VGII -0.6283422 -0.7832283
## Cryptococcus_gattii_VGIII -0.6283422 -0.7832283
## Cryptococcus_neoformans -0.6283422 -0.7832283
## Listeria_marthii -0.6283422 -0.7832283
## Erwinia_persicina -0.6283422 -0.7832283
## Pseudomonas_formosensis -0.6283422 -0.7832283
## Pseudomonas_putida -0.6283422 -0.7832283
## NS_22_a_control NS_21_d_molysis
## Actinobaculum_sp_oral_taxon_183 -0.5612477 -0.5076759
## Actinomyces_georgiae -0.5612477 -0.5076759
## Actinomyces_graevenitzii -0.5612477 -0.5076759
## Actinomyces_hongkongensis -0.5612477 -0.5076759
## Actinomyces_johnsonii -0.5612477 -0.5076759
## Actinomyces_massiliensis -0.5612477 -0.5076759
## Actinomyces_meyeri -0.5612477 -0.5076759
## Actinomyces_naeslundii -0.5612477 -0.5076759
## Actinomyces_odontolyticus -0.5612477 -0.5076759
## Actinomyces_oris -0.5612477 -0.5076759
## Actinomyces_sp_HMSC035G02 -0.5612477 -0.5076759
## Actinomyces_sp_HPA0247 -0.5612477 -0.5076759
## Actinomyces_sp_ICM47 -0.5612477 -0.5076759
## Actinomyces_sp_S6_Spd3 -0.5612477 -0.5076759
## Actinomyces_sp_oral_taxon_170 -0.5612477 -0.5076759
## Actinomyces_sp_oral_taxon_180 -0.5612477 -0.5076759
## Actinomyces_sp_oral_taxon_181 -0.5612477 -0.5076759
## Actinomyces_sp_oral_taxon_414 -0.5612477 -0.5076759
## Actinomyces_sp_oral_taxon_448 -0.5612477 -0.5076759
## Actinomyces_sp_oral_taxon_897 -0.5612477 -0.5076759
## Actinomyces_viscosus -0.5612477 -0.5076759
## Aeriscardovia_aeriphila 4.5076565 -0.5076759
## Alloscardovia_omnicolens -0.5612477 -0.5076759
## Bifidobacterium_dentium -0.5612477 -0.5076759
## Bifidobacterium_longum -0.5612477 -0.5076759
## Scardovia_wiggsiae -0.5612477 -0.5076759
## Corynebacterium_accolens 14.4473252 11.8028108
## Corynebacterium_atypicum 6.9568164 -0.5076759
## Corynebacterium_durum -0.5612477 -0.5076759
## Corynebacterium_matruchotii -0.5612477 -0.5076759
## Corynebacterium_pseudodiphtheriticum 10.2774701 -0.5076759
## Corynebacterium_pseudogenitalium 5.1944945 4.5982696
## Corynebacterium_tuberculostearicum -0.5612477 -0.5076759
## Rothia_aeria -0.5612477 -0.5076759
## Rothia_dentocariosa -0.5612477 -0.5076759
## Rothia_mucilaginosa -0.5612477 7.8217409
## Cutibacterium_acnes 10.8237307 11.0217920
## Cutibacterium_granulosum 7.7820681 7.0377138
## Propionibacterium_humerusii -0.5612477 -0.5076759
## Propionibacterium_namnetense 5.7878913 -0.5076759
## Propionibacterium_acidifaciens -0.5612477 -0.5076759
## Pseudopropionibacterium_propionicum -0.5612477 -0.5076759
## Atopobium_deltae -0.5612477 -0.5076759
## Atopobium_parvulum -0.5612477 -0.5076759
## Atopobium_rimae -0.5612477 -0.5076759
## Olsenella_profusa -0.5612477 -0.5076759
## Olsenella_scatoligenes -0.5612477 -0.5076759
## Olsenella_uli -0.5612477 -0.5076759
## Collinsella_aerofaciens -0.5612477 -0.5076759
## Collinsella_intestinalis -0.5612477 -0.5076759
## Collinsella_stercoris -0.5612477 -0.5076759
## Enorma_massiliensis -0.5612477 -0.5076759
## [Collinsella]_massiliensis -0.5612477 -0.5076759
## Asaccharobacter_celatus -0.5612477 -0.5076759
## Denitrobacterium_detoxificans -0.5612477 -0.5076759
## Enterorhabdus_caecimuris -0.5612477 -0.5076759
## Slackia_exigua -0.5612477 -0.5076759
## Slackia_isoflavoniconvertens 3.8082001 -0.5076759
## Rubrobacter_radiotolerans -0.5612477 -0.5076759
## Thermoleophilum_album -0.5612477 -0.5076759
## Porphyromonas_endodontalis -0.5612477 -0.5076759
## Porphyromonas_somerae -0.5612477 -0.5076759
## Prevotella_histicola -0.5612477 -0.5076759
## Prevotella_melaninogenica -0.5612477 -0.5076759
## Prevotella_oris -0.5612477 -0.5076759
## Kouleothrix_aurantiaca -0.5612477 -0.5076759
## Hydrogenibacillus_schlegelii -0.5612477 -0.5076759
## Gemella_asaccharolytica -0.5612477 -0.5076759
## Gemella_bergeri -0.5612477 -0.5076759
## Gemella_haemolysans -0.5612477 -0.5076759
## Gemella_morbillorum -0.5612477 -0.5076759
## Gemella_sanguinis -0.5612477 5.1377710
## Brochothrix_campestris -0.5612477 -0.5076759
## Staphylococcus_argenteus -0.5612477 7.9265704
## Staphylococcus_aureus -0.5612477 11.2405825
## Staphylococcus_epidermidis 9.5588018 8.1770636
## Staphylococcus_schweitzeri -0.5612477 -0.5076759
## Abiotrophia_defectiva -0.5612477 -0.5076759
## Abiotrophia_sp_HMSC24B09 -0.5612477 -0.5076759
## Dolosigranulum_pigrum 11.0808182 -0.5076759
## Granulicatella_adiacens -0.5612477 -0.5076759
## Granulicatella_elegans -0.5612477 -0.5076759
## Enterococcus_faecalis -0.5612477 -0.5076759
## Lactobacillus_rhamnosus -0.5612477 -0.5076759
## Streptococcus_anginosus -0.5612477 -0.5076759
## Streptococcus_australis -0.5612477 -0.5076759
## Streptococcus_cristatus -0.5612477 -0.5076759
## Streptococcus_gordonii -0.5612477 -0.5076759
## Streptococcus_infantis -0.5612477 -0.5076759
## Streptococcus_milleri -0.5612477 -0.5076759
## Streptococcus_mitis -0.5612477 5.8842412
## Streptococcus_oralis -0.5612477 4.9894923
## Streptococcus_parasanguinis -0.5612477 -0.5076759
## Streptococcus_peroris -0.5612477 -0.5076759
## Streptococcus_pneumoniae -0.5612477 -0.5076759
## Streptococcus_pseudopneumoniae -0.5612477 -0.5076759
## Streptococcus_salivarius -0.5612477 -0.5076759
## Streptococcus_sanguinis -0.5612477 -0.5076759
## Streptococcus_sp_A12 -0.5612477 -0.5076759
## Streptococcus_sp_F0442 -0.5612477 -0.5076759
## Streptococcus_sp_HMSC034E03 -0.5612477 -0.5076759
## Streptococcus_sp_HMSC067H01 -0.5612477 -0.5076759
## Streptococcus_sp_HMSC071D03 -0.5612477 -0.5076759
## Streptococcus_sp_HPH0090 -0.5612477 -0.5076759
## Streptococcus_sp_M334 -0.5612477 -0.5076759
## Streptococcus_vestibularis -0.5612477 -0.5076759
## Eubacterium_brachy -0.5612477 -0.5076759
## Eubacterium_infirmum -0.5612477 -0.5076759
## Eubacterium_nodatum -0.5612477 -0.5076759
## Eubacterium_sulci -0.5612477 -0.5076759
## Mogibacterium_diversum -0.5612477 -0.5076759
## Mogibacterium_pumilum -0.5612477 -0.5076759
## Mogibacterium_timidum -0.5612477 -0.5076759
## Lachnoanaerobaculum_saburreum -0.5612477 -0.5076759
## Oribacterium_parvum -0.5612477 -0.5076759
## Oribacterium_sinus -0.5612477 -0.5076759
## Oribacterium_sp_oral_taxon_078 -0.5612477 -0.5076759
## Stomatobaculum_longum -0.5612477 -0.5076759
## Peptostreptococcus_stomatis -0.5612477 -0.5076759
## Bulleidia_extructa -0.5612477 -0.5076759
## Solobacterium_moorei -0.5612477 -0.5076759
## Limnochorda_pilosa -0.5612477 -0.5076759
## Veillonella_atypica -0.5612477 -0.5076759
## Veillonella_dispar -0.5612477 -0.5076759
## Veillonella_infantium -0.5612477 -0.5076759
## Veillonella_parvula -0.5612477 -0.5076759
## Veillonella_sp_T11011_6 -0.5612477 -0.5076759
## Anaerococcus_nagyae -0.5612477 -0.5076759
## Finegoldia_magna -0.5612477 -0.5076759
## Parvimonas_micra -0.5612477 -0.5076759
## Parvimonas_sp_oral_taxon_110 -0.5612477 -0.5076759
## Parvimonas_sp_oral_taxon_393 -0.5612477 -0.5076759
## Fusobacterium_nucleatum -0.5612477 -0.5076759
## Leptotrichia_wadei -0.5612477 -0.5076759
## Gemmata_obscuriglobus -0.5612477 -0.5076759
## Paludisphaera_borealis -0.5612477 -0.5076759
## Achromobacter_xylosoxidans -0.5612477 -0.5076759
## Cupriavidus_sp 10.1953990 11.3280502
## Sutterella_parvirubra -0.5612477 -0.5076759
## Anaerobiospirillum_thomasii -0.5612477 -0.5076759
## Cardiobacterium_hominis -0.5612477 -0.5076759
## Cardiobacterium_valvarum -0.5612477 -0.5076759
## Alkalilimnicola_ehrlichii -0.5612477 -0.5076759
## Escherichia_coli -0.5612477 -0.5076759
## Thiohalorhabdus_denitrificans -0.5612477 -0.5076759
## Pseudomonas_aeruginosa -0.5612477 -0.5076759
## Acholeplasma_oculi -0.5612477 -0.5076759
## Candida_albicans -0.5612477 -0.5076759
## Candida_dubliniensis -0.5612477 -0.5076759
## Candida_parapsilosis -0.5612477 -0.5076759
## Malassezia_restricta 6.2163989 -0.5076759
## Nakamurella_silvestris -0.5612477 -0.5076759
## Alloprevotella_tannerae -0.5612477 -0.5076759
## Prevotella_jejuni -0.5612477 -0.5076759
## Prevotella_pallens -0.5612477 -0.5076759
## Prevotella_salivae -0.5612477 -0.5076759
## Prevotella_sp_oral_taxon_306 -0.5612477 -0.5076759
## Prevotella_veroralis -0.5612477 -0.5076759
## Tannerella_sp_oral_taxon_808 -0.5612477 -0.5076759
## Tannerella_sp_oral_taxon_HOT_286 -0.5612477 -0.5076759
## Capnocytophaga_gingivalis -0.5612477 -0.5076759
## Bacillus_ginsengihumi -0.5612477 -0.5076759
## Listeria_floridensis -0.5612477 -0.5076759
## Agitococcus_lubricus -0.5612477 -0.5076759
## Lactobacillus_fermentum -0.5612477 -0.5076759
## Lactobacillus_gasseri -0.5612477 -0.5076759
## Sharpea_azabuensis -0.5612477 -0.5076759
## Streptococcus_mutans -0.5612477 -0.5076759
## Oribacterium_asaccharolyticum -0.5612477 -0.5076759
## Megasphaera_micronuciformis -0.5612477 -0.5076759
## Neisseria_flavescens -0.5612477 -0.5076759
## Neisseria_subflava -0.5612477 -0.5076759
## Stenotrophomonas_maltophilia -0.5612477 -0.5076759
## Stenotrophomonas_pavanii -0.5612477 -0.5076759
## Stenotrophomonas_rhizophila -0.5612477 -0.5076759
## Bacillus_intestinalis -0.5612477 -0.5076759
## Listeria_innocua -0.5612477 -0.5076759
## Listeria_monocytogenes -0.5612477 -0.5076759
## Staphylococcus_haemolyticus -0.5612477 -0.5076759
## Streptococcus_sobrinus -0.5612477 -0.5076759
## Eggerthia_catenaformis -0.5612477 -0.5076759
## Leptotrichia_sp_oral_taxon_498 -0.5612477 -0.5076759
## Rickettsia_felis -0.5612477 -0.5076759
## Haemophilus_parainfluenzae -0.5612477 -0.5076759
## Candida_orthopsilosis -0.5612477 -0.5076759
## Nannocystis_exedens -0.5612477 -0.5076759
## Campylobacter_concisus -0.5612477 -0.5076759
## Franconibacter_helveticus -0.5612477 -0.5076759
## Klebsiella_pneumoniae -0.5612477 -0.5076759
## Salmonella_enterica -0.5612477 -0.5076759
## Superficieibacter_electus -0.5612477 -0.5076759
## Pseudomonas_fluorescens -0.5612477 -0.5076759
## Saccharomyces_cerevisiae -0.5612477 -0.5076759
## S._cerevisiae x S._kudriavzevii -0.5612477 -0.5076759
## Saccharomyces_kudriavzevii -0.5612477 -0.5076759
## Cryptococcus_gattii_VGI -0.5612477 -0.5076759
## Cryptococcus_gattii_VGII -0.5612477 -0.5076759
## Cryptococcus_gattii_VGIII -0.5612477 -0.5076759
## Cryptococcus_neoformans -0.5612477 -0.5076759
## Listeria_marthii -0.5612477 -0.5076759
## Erwinia_persicina -0.5612477 -0.5076759
## Pseudomonas_formosensis -0.5612477 -0.5076759
## Pseudomonas_putida -0.5612477 -0.5076759
## NS_21_c_benzonase NS_21_b_host_zero
## Actinobaculum_sp_oral_taxon_183 -0.3653391 -0.7826952
## Actinomyces_georgiae -0.3653391 -0.7826952
## Actinomyces_graevenitzii -0.3653391 -0.7826952
## Actinomyces_hongkongensis -0.3653391 -0.7826952
## Actinomyces_johnsonii -0.3653391 -0.7826952
## Actinomyces_massiliensis -0.3653391 -0.7826952
## Actinomyces_meyeri -0.3653391 -0.7826952
## Actinomyces_naeslundii -0.3653391 -0.7826952
## Actinomyces_odontolyticus -0.3653391 -0.7826952
## Actinomyces_oris -0.3653391 -0.7826952
## Actinomyces_sp_HMSC035G02 -0.3653391 -0.7826952
## Actinomyces_sp_HPA0247 -0.3653391 -0.7826952
## Actinomyces_sp_ICM47 -0.3653391 -0.7826952
## Actinomyces_sp_S6_Spd3 -0.3653391 -0.7826952
## Actinomyces_sp_oral_taxon_170 -0.3653391 -0.7826952
## Actinomyces_sp_oral_taxon_180 -0.3653391 -0.7826952
## Actinomyces_sp_oral_taxon_181 -0.3653391 -0.7826952
## Actinomyces_sp_oral_taxon_414 -0.3653391 -0.7826952
## Actinomyces_sp_oral_taxon_448 -0.3653391 -0.7826952
## Actinomyces_sp_oral_taxon_897 -0.3653391 -0.7826952
## Actinomyces_viscosus -0.3653391 -0.7826952
## Aeriscardovia_aeriphila -0.3653391 -0.7826952
## Alloscardovia_omnicolens -0.3653391 -0.7826952
## Bifidobacterium_dentium -0.3653391 -0.7826952
## Bifidobacterium_longum -0.3653391 -0.7826952
## Scardovia_wiggsiae -0.3653391 -0.7826952
## Corynebacterium_accolens 11.5731808 12.7266841
## Corynebacterium_atypicum -0.3653391 5.2926508
## Corynebacterium_durum -0.3653391 -0.7826952
## Corynebacterium_matruchotii -0.3653391 -0.7826952
## Corynebacterium_pseudodiphtheriticum -0.3653391 -0.7826952
## Corynebacterium_pseudogenitalium -0.3653391 6.8492213
## Corynebacterium_tuberculostearicum -0.3653391 6.9883719
## Rothia_aeria -0.3653391 -0.7826952
## Rothia_dentocariosa -0.3653391 -0.7826952
## Rothia_mucilaginosa 6.0265780 6.6288611
## Cutibacterium_acnes 11.1570019 12.9739450
## Cutibacterium_granulosum 4.7222572 8.7335109
## Propionibacterium_humerusii -0.3653391 5.3679076
## Propionibacterium_namnetense -0.3653391 -0.7826952
## Propionibacterium_acidifaciens -0.3653391 -0.7826952
## Pseudopropionibacterium_propionicum -0.3653391 -0.7826952
## Atopobium_deltae -0.3653391 -0.7826952
## Atopobium_parvulum -0.3653391 -0.7826952
## Atopobium_rimae -0.3653391 -0.7826952
## Olsenella_profusa -0.3653391 -0.7826952
## Olsenella_scatoligenes -0.3653391 -0.7826952
## Olsenella_uli -0.3653391 -0.7826952
## Collinsella_aerofaciens -0.3653391 -0.7826952
## Collinsella_intestinalis -0.3653391 -0.7826952
## Collinsella_stercoris -0.3653391 -0.7826952
## Enorma_massiliensis -0.3653391 -0.7826952
## [Collinsella]_massiliensis -0.3653391 -0.7826952
## Asaccharobacter_celatus -0.3653391 -0.7826952
## Denitrobacterium_detoxificans -0.3653391 -0.7826952
## Enterorhabdus_caecimuris -0.3653391 -0.7826952
## Slackia_exigua -0.3653391 -0.7826952
## Slackia_isoflavoniconvertens -0.3653391 -0.7826952
## Rubrobacter_radiotolerans -0.3653391 -0.7826952
## Thermoleophilum_album -0.3653391 -0.7826952
## Porphyromonas_endodontalis -0.3653391 -0.7826952
## Porphyromonas_somerae -0.3653391 -0.7826952
## Prevotella_histicola -0.3653391 -0.7826952
## Prevotella_melaninogenica -0.3653391 -0.7826952
## Prevotella_oris -0.3653391 -0.7826952
## Kouleothrix_aurantiaca -0.3653391 -0.7826952
## Hydrogenibacillus_schlegelii -0.3653391 -0.7826952
## Gemella_asaccharolytica -0.3653391 -0.7826952
## Gemella_bergeri -0.3653391 -0.7826952
## Gemella_haemolysans -0.3653391 5.3528697
## Gemella_morbillorum -0.3653391 -0.7826952
## Gemella_sanguinis -0.3653391 4.6109323
## Brochothrix_campestris -0.3653391 -0.7826952
## Staphylococcus_argenteus 6.5273025 8.8507537
## Staphylococcus_aureus 10.8277392 12.0163202
## Staphylococcus_epidermidis 8.8075071 11.0587351
## Staphylococcus_schweitzeri -0.3653391 5.8584870
## Abiotrophia_defectiva -0.3653391 -0.7826952
## Abiotrophia_sp_HMSC24B09 -0.3653391 -0.7826952
## Dolosigranulum_pigrum -0.3653391 -0.7826952
## Granulicatella_adiacens -0.3653391 -0.7826952
## Granulicatella_elegans -0.3653391 -0.7826952
## Enterococcus_faecalis -0.3653391 -0.7826952
## Lactobacillus_rhamnosus -0.3653391 -0.7826952
## Streptococcus_anginosus -0.3653391 -0.7826952
## Streptococcus_australis -0.3653391 -0.7826952
## Streptococcus_cristatus -0.3653391 -0.7826952
## Streptococcus_gordonii -0.3653391 -0.7826952
## Streptococcus_infantis -0.3653391 -0.7826952
## Streptococcus_milleri -0.3653391 -0.7826952
## Streptococcus_mitis -0.3653391 -0.7826952
## Streptococcus_oralis -0.3653391 -0.7826952
## Streptococcus_parasanguinis -0.3653391 -0.7826952
## Streptococcus_peroris -0.3653391 -0.7826952
## Streptococcus_pneumoniae -0.3653391 -0.7826952
## Streptococcus_pseudopneumoniae -0.3653391 -0.7826952
## Streptococcus_salivarius -0.3653391 -0.7826952
## Streptococcus_sanguinis -0.3653391 -0.7826952
## Streptococcus_sp_A12 -0.3653391 -0.7826952
## Streptococcus_sp_F0442 -0.3653391 -0.7826952
## Streptococcus_sp_HMSC034E03 -0.3653391 -0.7826952
## Streptococcus_sp_HMSC067H01 -0.3653391 -0.7826952
## Streptococcus_sp_HMSC071D03 -0.3653391 -0.7826952
## Streptococcus_sp_HPH0090 -0.3653391 -0.7826952
## Streptococcus_sp_M334 -0.3653391 -0.7826952
## Streptococcus_vestibularis -0.3653391 -0.7826952
## Eubacterium_brachy -0.3653391 -0.7826952
## Eubacterium_infirmum -0.3653391 -0.7826952
## Eubacterium_nodatum -0.3653391 -0.7826952
## Eubacterium_sulci -0.3653391 -0.7826952
## Mogibacterium_diversum -0.3653391 -0.7826952
## Mogibacterium_pumilum -0.3653391 -0.7826952
## Mogibacterium_timidum -0.3653391 -0.7826952
## Lachnoanaerobaculum_saburreum -0.3653391 -0.7826952
## Oribacterium_parvum -0.3653391 -0.7826952
## Oribacterium_sinus -0.3653391 -0.7826952
## Oribacterium_sp_oral_taxon_078 -0.3653391 -0.7826952
## Stomatobaculum_longum -0.3653391 -0.7826952
## Peptostreptococcus_stomatis -0.3653391 -0.7826952
## Bulleidia_extructa -0.3653391 -0.7826952
## Solobacterium_moorei -0.3653391 -0.7826952
## Limnochorda_pilosa -0.3653391 -0.7826952
## Veillonella_atypica -0.3653391 -0.7826952
## Veillonella_dispar -0.3653391 -0.7826952
## Veillonella_infantium -0.3653391 -0.7826952
## Veillonella_parvula -0.3653391 -0.7826952
## Veillonella_sp_T11011_6 -0.3653391 -0.7826952
## Anaerococcus_nagyae -0.3653391 5.4995715
## Finegoldia_magna -0.3653391 8.2364847
## Parvimonas_micra -0.3653391 -0.7826952
## Parvimonas_sp_oral_taxon_110 -0.3653391 -0.7826952
## Parvimonas_sp_oral_taxon_393 -0.3653391 -0.7826952
## Fusobacterium_nucleatum -0.3653391 -0.7826952
## Leptotrichia_wadei -0.3653391 -0.7826952
## Gemmata_obscuriglobus -0.3653391 -0.7826952
## Paludisphaera_borealis -0.3653391 -0.7826952
## Achromobacter_xylosoxidans -0.3653391 -0.7826952
## Cupriavidus_sp 11.5995597 11.9026814
## Sutterella_parvirubra -0.3653391 5.8506232
## Anaerobiospirillum_thomasii -0.3653391 -0.7826952
## Cardiobacterium_hominis -0.3653391 -0.7826952
## Cardiobacterium_valvarum -0.3653391 -0.7826952
## Alkalilimnicola_ehrlichii -0.3653391 -0.7826952
## Escherichia_coli -0.3653391 -0.7826952
## Thiohalorhabdus_denitrificans -0.3653391 -0.7826952
## Pseudomonas_aeruginosa -0.3653391 -0.7826952
## Acholeplasma_oculi -0.3653391 -0.7826952
## Candida_albicans -0.3653391 -0.7826952
## Candida_dubliniensis -0.3653391 -0.7826952
## Candida_parapsilosis -0.3653391 -0.7826952
## Malassezia_restricta -0.3653391 -0.7826952
## Nakamurella_silvestris -0.3653391 -0.7826952
## Alloprevotella_tannerae -0.3653391 -0.7826952
## Prevotella_jejuni -0.3653391 -0.7826952
## Prevotella_pallens -0.3653391 -0.7826952
## Prevotella_salivae -0.3653391 -0.7826952
## Prevotella_sp_oral_taxon_306 -0.3653391 -0.7826952
## Prevotella_veroralis -0.3653391 -0.7826952
## Tannerella_sp_oral_taxon_808 -0.3653391 -0.7826952
## Tannerella_sp_oral_taxon_HOT_286 -0.3653391 -0.7826952
## Capnocytophaga_gingivalis -0.3653391 -0.7826952
## Bacillus_ginsengihumi -0.3653391 -0.7826952
## Listeria_floridensis -0.3653391 -0.7826952
## Agitococcus_lubricus -0.3653391 -0.7826952
## Lactobacillus_fermentum -0.3653391 -0.7826952
## Lactobacillus_gasseri -0.3653391 -0.7826952
## Sharpea_azabuensis -0.3653391 -0.7826952
## Streptococcus_mutans -0.3653391 -0.7826952
## Oribacterium_asaccharolyticum -0.3653391 -0.7826952
## Megasphaera_micronuciformis -0.3653391 -0.7826952
## Neisseria_flavescens -0.3653391 -0.7826952
## Neisseria_subflava -0.3653391 -0.7826952
## Stenotrophomonas_maltophilia -0.3653391 -0.7826952
## Stenotrophomonas_pavanii -0.3653391 -0.7826952
## Stenotrophomonas_rhizophila -0.3653391 -0.7826952
## Bacillus_intestinalis -0.3653391 -0.7826952
## Listeria_innocua -0.3653391 -0.7826952
## Listeria_monocytogenes -0.3653391 -0.7826952
## Staphylococcus_haemolyticus -0.3653391 -0.7826952
## Streptococcus_sobrinus -0.3653391 -0.7826952
## Eggerthia_catenaformis -0.3653391 -0.7826952
## Leptotrichia_sp_oral_taxon_498 -0.3653391 -0.7826952
## Rickettsia_felis -0.3653391 -0.7826952
## Haemophilus_parainfluenzae -0.3653391 -0.7826952
## Candida_orthopsilosis -0.3653391 -0.7826952
## Nannocystis_exedens -0.3653391 -0.7826952
## Campylobacter_concisus -0.3653391 -0.7826952
## Franconibacter_helveticus -0.3653391 -0.7826952
## Klebsiella_pneumoniae -0.3653391 -0.7826952
## Salmonella_enterica -0.3653391 -0.7826952
## Superficieibacter_electus -0.3653391 -0.7826952
## Pseudomonas_fluorescens -0.3653391 -0.7826952
## Saccharomyces_cerevisiae -0.3653391 -0.7826952
## S._cerevisiae x S._kudriavzevii -0.3653391 -0.7826952
## Saccharomyces_kudriavzevii -0.3653391 -0.7826952
## Cryptococcus_gattii_VGI -0.3653391 -0.7826952
## Cryptococcus_gattii_VGII -0.3653391 -0.7826952
## Cryptococcus_gattii_VGIII -0.3653391 -0.7826952
## Cryptococcus_neoformans -0.3653391 -0.7826952
## Listeria_marthii -0.3653391 -0.7826952
## Erwinia_persicina -0.3653391 -0.7826952
## Pseudomonas_formosensis -0.3653391 -0.7826952
## Pseudomonas_putida -0.3653391 -0.7826952
## NS_21_a_control NS_19_d_molysis
## Actinobaculum_sp_oral_taxon_183 -0.5436665 -1.197266
## Actinomyces_georgiae -0.5436665 -1.197266
## Actinomyces_graevenitzii -0.5436665 -1.197266
## Actinomyces_hongkongensis -0.5436665 -1.197266
## Actinomyces_johnsonii -0.5436665 -1.197266
## Actinomyces_massiliensis -0.5436665 -1.197266
## Actinomyces_meyeri -0.5436665 -1.197266
## Actinomyces_naeslundii -0.5436665 6.754997
## Actinomyces_odontolyticus -0.5436665 3.503214
## Actinomyces_oris -0.5436665 5.566619
## Actinomyces_sp_HMSC035G02 -0.5436665 -1.197266
## Actinomyces_sp_HPA0247 -0.5436665 -1.197266
## Actinomyces_sp_ICM47 -0.5436665 1.980787
## Actinomyces_sp_S6_Spd3 -0.5436665 -1.197266
## Actinomyces_sp_oral_taxon_170 -0.5436665 -1.197266
## Actinomyces_sp_oral_taxon_180 -0.5436665 -1.197266
## Actinomyces_sp_oral_taxon_181 -0.5436665 -1.197266
## Actinomyces_sp_oral_taxon_414 -0.5436665 -1.197266
## Actinomyces_sp_oral_taxon_448 -0.5436665 -1.197266
## Actinomyces_sp_oral_taxon_897 -0.5436665 -1.197266
## Actinomyces_viscosus -0.5436665 -1.197266
## Aeriscardovia_aeriphila -0.5436665 4.640464
## Alloscardovia_omnicolens -0.5436665 -1.197266
## Bifidobacterium_dentium -0.5436665 -1.197266
## Bifidobacterium_longum -0.5436665 -1.197266
## Scardovia_wiggsiae -0.5436665 -1.197266
## Corynebacterium_accolens 9.7627162 14.386352
## Corynebacterium_atypicum -0.5436665 7.340709
## Corynebacterium_durum -0.5436665 -1.197266
## Corynebacterium_matruchotii -0.5436665 -1.197266
## Corynebacterium_pseudodiphtheriticum -0.5436665 12.859428
## Corynebacterium_pseudogenitalium 6.7581559 -1.197266
## Corynebacterium_tuberculostearicum -0.5436665 3.833172
## Rothia_aeria -0.5436665 -1.197266
## Rothia_dentocariosa -0.5436665 -1.197266
## Rothia_mucilaginosa -0.5436665 -1.197266
## Cutibacterium_acnes 11.1895024 13.584135
## Cutibacterium_granulosum 7.6157083 10.170460
## Propionibacterium_humerusii 4.6820802 5.984326
## Propionibacterium_namnetense -0.5436665 7.566787
## Propionibacterium_acidifaciens -0.5436665 -1.197266
## Pseudopropionibacterium_propionicum -0.5436665 -1.197266
## Atopobium_deltae -0.5436665 -1.197266
## Atopobium_parvulum -0.5436665 -1.197266
## Atopobium_rimae -0.5436665 -1.197266
## Olsenella_profusa -0.5436665 -1.197266
## Olsenella_scatoligenes -0.5436665 -1.197266
## Olsenella_uli -0.5436665 -1.197266
## Collinsella_aerofaciens -0.5436665 3.280070
## Collinsella_intestinalis -0.5436665 2.810067
## Collinsella_stercoris -0.5436665 -1.197266
## Enorma_massiliensis -0.5436665 -1.197266
## [Collinsella]_massiliensis -0.5436665 3.221574
## Asaccharobacter_celatus -0.5436665 -1.197266
## Denitrobacterium_detoxificans -0.5436665 -1.197266
## Enterorhabdus_caecimuris -0.5436665 -1.197266
## Slackia_exigua -0.5436665 -1.197266
## Slackia_isoflavoniconvertens -0.5436665 3.133467
## Rubrobacter_radiotolerans -0.5436665 -1.197266
## Thermoleophilum_album -0.5436665 3.146539
## Porphyromonas_endodontalis -0.5436665 -1.197266
## Porphyromonas_somerae -0.5436665 -1.197266
## Prevotella_histicola -0.5436665 -1.197266
## Prevotella_melaninogenica -0.5436665 -1.197266
## Prevotella_oris -0.5436665 -1.197266
## Kouleothrix_aurantiaca -0.5436665 -1.197266
## Hydrogenibacillus_schlegelii -0.5436665 -1.197266
## Gemella_asaccharolytica -0.5436665 -1.197266
## Gemella_bergeri -0.5436665 -1.197266
## Gemella_haemolysans -0.5436665 4.942618
## Gemella_morbillorum -0.5436665 -1.197266
## Gemella_sanguinis 5.5983709 5.697404
## Brochothrix_campestris -0.5436665 -1.197266
## Staphylococcus_argenteus 5.6568427 -1.197266
## Staphylococcus_aureus 10.2841792 -1.197266
## Staphylococcus_epidermidis 10.0686448 12.294895
## Staphylococcus_schweitzeri -0.5436665 -1.197266
## Abiotrophia_defectiva -0.5436665 -1.197266
## Abiotrophia_sp_HMSC24B09 -0.5436665 -1.197266
## Dolosigranulum_pigrum -0.5436665 13.522463
## Granulicatella_adiacens -0.5436665 -1.197266
## Granulicatella_elegans -0.5436665 -1.197266
## Enterococcus_faecalis -0.5436665 -1.197266
## Lactobacillus_rhamnosus -0.5436665 -1.197266
## Streptococcus_anginosus -0.5436665 -1.197266
## Streptococcus_australis -0.5436665 -1.197266
## Streptococcus_cristatus -0.5436665 -1.197266
## Streptococcus_gordonii -0.5436665 -1.197266
## Streptococcus_infantis -0.5436665 -1.197266
## Streptococcus_milleri -0.5436665 -1.197266
## Streptococcus_mitis 6.0534792 -1.197266
## Streptococcus_oralis -0.5436665 6.451950
## Streptococcus_parasanguinis -0.5436665 -1.197266
## Streptococcus_peroris -0.5436665 -1.197266
## Streptococcus_pneumoniae -0.5436665 -1.197266
## Streptococcus_pseudopneumoniae -0.5436665 -1.197266
## Streptococcus_salivarius -0.5436665 6.146160
## Streptococcus_sanguinis -0.5436665 6.652837
## Streptococcus_sp_A12 -0.5436665 -1.197266
## Streptococcus_sp_F0442 -0.5436665 -1.197266
## Streptococcus_sp_HMSC034E03 -0.5436665 -1.197266
## Streptococcus_sp_HMSC067H01 -0.5436665 -1.197266
## Streptococcus_sp_HMSC071D03 -0.5436665 -1.197266
## Streptococcus_sp_HPH0090 -0.5436665 -1.197266
## Streptococcus_sp_M334 -0.5436665 -1.197266
## Streptococcus_vestibularis -0.5436665 -1.197266
## Eubacterium_brachy -0.5436665 -1.197266
## Eubacterium_infirmum -0.5436665 -1.197266
## Eubacterium_nodatum -0.5436665 -1.197266
## Eubacterium_sulci -0.5436665 -1.197266
## Mogibacterium_diversum -0.5436665 -1.197266
## Mogibacterium_pumilum -0.5436665 -1.197266
## Mogibacterium_timidum -0.5436665 -1.197266
## Lachnoanaerobaculum_saburreum -0.5436665 -1.197266
## Oribacterium_parvum -0.5436665 -1.197266
## Oribacterium_sinus -0.5436665 -1.197266
## Oribacterium_sp_oral_taxon_078 -0.5436665 -1.197266
## Stomatobaculum_longum -0.5436665 -1.197266
## Peptostreptococcus_stomatis -0.5436665 -1.197266
## Bulleidia_extructa -0.5436665 -1.197266
## Solobacterium_moorei -0.5436665 -1.197266
## Limnochorda_pilosa -0.5436665 4.135452
## Veillonella_atypica -0.5436665 -1.197266
## Veillonella_dispar -0.5436665 -1.197266
## Veillonella_infantium -0.5436665 -1.197266
## Veillonella_parvula -0.5436665 -1.197266
## Veillonella_sp_T11011_6 -0.5436665 -1.197266
## Anaerococcus_nagyae -0.5436665 -1.197266
## Finegoldia_magna 7.5203409 6.823661
## Parvimonas_micra -0.5436665 -1.197266
## Parvimonas_sp_oral_taxon_110 -0.5436665 -1.197266
## Parvimonas_sp_oral_taxon_393 -0.5436665 -1.197266
## Fusobacterium_nucleatum -0.5436665 -1.197266
## Leptotrichia_wadei -0.5436665 -1.197266
## Gemmata_obscuriglobus -0.5436665 4.918626
## Paludisphaera_borealis -0.5436665 -1.197266
## Achromobacter_xylosoxidans -0.5436665 -1.197266
## Cupriavidus_sp 10.1044928 11.881718
## Sutterella_parvirubra -0.5436665 5.706481
## Anaerobiospirillum_thomasii -0.5436665 -1.197266
## Cardiobacterium_hominis -0.5436665 -1.197266
## Cardiobacterium_valvarum -0.5436665 -1.197266
## Alkalilimnicola_ehrlichii -0.5436665 -1.197266
## Escherichia_coli 8.0021142 -1.197266
## Thiohalorhabdus_denitrificans -0.5436665 -1.197266
## Pseudomonas_aeruginosa -0.5436665 -1.197266
## Acholeplasma_oculi -0.5436665 2.992388
## Candida_albicans -0.5436665 -1.197266
## Candida_dubliniensis -0.5436665 -1.197266
## Candida_parapsilosis -0.5436665 -1.197266
## Malassezia_restricta -0.5436665 -1.197266
## Nakamurella_silvestris -0.5436665 -1.197266
## Alloprevotella_tannerae -0.5436665 -1.197266
## Prevotella_jejuni -0.5436665 -1.197266
## Prevotella_pallens -0.5436665 -1.197266
## Prevotella_salivae -0.5436665 -1.197266
## Prevotella_sp_oral_taxon_306 -0.5436665 -1.197266
## Prevotella_veroralis -0.5436665 -1.197266
## Tannerella_sp_oral_taxon_808 -0.5436665 -1.197266
## Tannerella_sp_oral_taxon_HOT_286 -0.5436665 -1.197266
## Capnocytophaga_gingivalis -0.5436665 -1.197266
## Bacillus_ginsengihumi -0.5436665 -1.197266
## Listeria_floridensis -0.5436665 -1.197266
## Agitococcus_lubricus -0.5436665 -1.197266
## Lactobacillus_fermentum -0.5436665 -1.197266
## Lactobacillus_gasseri -0.5436665 -1.197266
## Sharpea_azabuensis -0.5436665 -1.197266
## Streptococcus_mutans -0.5436665 -1.197266
## Oribacterium_asaccharolyticum -0.5436665 -1.197266
## Megasphaera_micronuciformis -0.5436665 -1.197266
## Neisseria_flavescens -0.5436665 -1.197266
## Neisseria_subflava -0.5436665 -1.197266
## Stenotrophomonas_maltophilia -0.5436665 -1.197266
## Stenotrophomonas_pavanii -0.5436665 -1.197266
## Stenotrophomonas_rhizophila -0.5436665 -1.197266
## Bacillus_intestinalis -0.5436665 -1.197266
## Listeria_innocua -0.5436665 -1.197266
## Listeria_monocytogenes -0.5436665 -1.197266
## Staphylococcus_haemolyticus -0.5436665 -1.197266
## Streptococcus_sobrinus -0.5436665 -1.197266
## Eggerthia_catenaformis -0.5436665 -1.197266
## Leptotrichia_sp_oral_taxon_498 -0.5436665 -1.197266
## Rickettsia_felis -0.5436665 -1.197266
## Haemophilus_parainfluenzae -0.5436665 -1.197266
## Candida_orthopsilosis -0.5436665 -1.197266
## Nannocystis_exedens -0.5436665 -1.197266
## Campylobacter_concisus -0.5436665 -1.197266
## Franconibacter_helveticus -0.5436665 -1.197266
## Klebsiella_pneumoniae -0.5436665 -1.197266
## Salmonella_enterica -0.5436665 -1.197266
## Superficieibacter_electus -0.5436665 -1.197266
## Pseudomonas_fluorescens -0.5436665 -1.197266
## Saccharomyces_cerevisiae -0.5436665 -1.197266
## S._cerevisiae x S._kudriavzevii -0.5436665 -1.197266
## Saccharomyces_kudriavzevii -0.5436665 -1.197266
## Cryptococcus_gattii_VGI -0.5436665 -1.197266
## Cryptococcus_gattii_VGII -0.5436665 -1.197266
## Cryptococcus_gattii_VGIII -0.5436665 -1.197266
## Cryptococcus_neoformans -0.5436665 -1.197266
## Listeria_marthii -0.5436665 -1.197266
## Erwinia_persicina -0.5436665 -1.197266
## Pseudomonas_formosensis -0.5436665 -1.197266
## Pseudomonas_putida -0.5436665 -1.197266
## NS_19_c_benzonase NS_19_b_host_zero
## Actinobaculum_sp_oral_taxon_183 -0.621785 -0.824453
## Actinomyces_georgiae -0.621785 -0.824453
## Actinomyces_graevenitzii -0.621785 -0.824453
## Actinomyces_hongkongensis -0.621785 -0.824453
## Actinomyces_johnsonii -0.621785 -0.824453
## Actinomyces_massiliensis -0.621785 -0.824453
## Actinomyces_meyeri -0.621785 -0.824453
## Actinomyces_naeslundii -0.621785 -0.824453
## Actinomyces_odontolyticus -0.621785 -0.824453
## Actinomyces_oris -0.621785 -0.824453
## Actinomyces_sp_HMSC035G02 -0.621785 -0.824453
## Actinomyces_sp_HPA0247 -0.621785 -0.824453
## Actinomyces_sp_ICM47 -0.621785 -0.824453
## Actinomyces_sp_S6_Spd3 -0.621785 -0.824453
## Actinomyces_sp_oral_taxon_170 -0.621785 -0.824453
## Actinomyces_sp_oral_taxon_180 -0.621785 -0.824453
## Actinomyces_sp_oral_taxon_181 -0.621785 -0.824453
## Actinomyces_sp_oral_taxon_414 -0.621785 -0.824453
## Actinomyces_sp_oral_taxon_448 -0.621785 -0.824453
## Actinomyces_sp_oral_taxon_897 -0.621785 -0.824453
## Actinomyces_viscosus -0.621785 -0.824453
## Aeriscardovia_aeriphila 4.471965 5.343064
## Alloscardovia_omnicolens -0.621785 -0.824453
## Bifidobacterium_dentium -0.621785 -0.824453
## Bifidobacterium_longum -0.621785 -0.824453
## Scardovia_wiggsiae -0.621785 -0.824453
## Corynebacterium_accolens 13.867291 15.185989
## Corynebacterium_atypicum 6.974105 7.889786
## Corynebacterium_durum -0.621785 -0.824453
## Corynebacterium_matruchotii -0.621785 -0.824453
## Corynebacterium_pseudodiphtheriticum 12.245007 12.318620
## Corynebacterium_pseudogenitalium 5.775145 -0.824453
## Corynebacterium_tuberculostearicum -0.621785 4.192827
## Rothia_aeria -0.621785 -0.824453
## Rothia_dentocariosa -0.621785 -0.824453
## Rothia_mucilaginosa -0.621785 -0.824453
## Cutibacterium_acnes 12.348115 12.551402
## Cutibacterium_granulosum 7.634303 7.692340
## Propionibacterium_humerusii 3.797056 5.343064
## Propionibacterium_namnetense 6.835247 6.433255
## Propionibacterium_acidifaciens -0.621785 -0.824453
## Pseudopropionibacterium_propionicum -0.621785 -0.824453
## Atopobium_deltae -0.621785 -0.824453
## Atopobium_parvulum -0.621785 -0.824453
## Atopobium_rimae -0.621785 -0.824453
## Olsenella_profusa -0.621785 -0.824453
## Olsenella_scatoligenes -0.621785 -0.824453
## Olsenella_uli -0.621785 -0.824453
## Collinsella_aerofaciens 3.832562 3.652884
## Collinsella_intestinalis -0.621785 3.218598
## Collinsella_stercoris -0.621785 -0.824453
## Enorma_massiliensis -0.621785 -0.824453
## [Collinsella]_massiliensis -0.621785 -0.824453
## Asaccharobacter_celatus -0.621785 -0.824453
## Denitrobacterium_detoxificans -0.621785 -0.824453
## Enterorhabdus_caecimuris -0.621785 -0.824453
## Slackia_exigua -0.621785 -0.824453
## Slackia_isoflavoniconvertens 3.708948 4.596082
## Rubrobacter_radiotolerans -0.621785 -0.824453
## Thermoleophilum_album -0.621785 4.186182
## Porphyromonas_endodontalis -0.621785 -0.824453
## Porphyromonas_somerae -0.621785 -0.824453
## Prevotella_histicola -0.621785 -0.824453
## Prevotella_melaninogenica -0.621785 -0.824453
## Prevotella_oris -0.621785 -0.824453
## Kouleothrix_aurantiaca -0.621785 -0.824453
## Hydrogenibacillus_schlegelii -0.621785 -0.824453
## Gemella_asaccharolytica -0.621785 -0.824453
## Gemella_bergeri -0.621785 -0.824453
## Gemella_haemolysans -0.621785 -0.824453
## Gemella_morbillorum -0.621785 -0.824453
## Gemella_sanguinis -0.621785 -0.824453
## Brochothrix_campestris -0.621785 -0.824453
## Staphylococcus_argenteus -0.621785 -0.824453
## Staphylococcus_aureus -0.621785 -0.824453
## Staphylococcus_epidermidis 11.690825 9.405024
## Staphylococcus_schweitzeri -0.621785 -0.824453
## Abiotrophia_defectiva -0.621785 -0.824453
## Abiotrophia_sp_HMSC24B09 -0.621785 -0.824453
## Dolosigranulum_pigrum 13.269262 13.503632
## Granulicatella_adiacens -0.621785 -0.824453
## Granulicatella_elegans -0.621785 -0.824453
## Enterococcus_faecalis -0.621785 -0.824453
## Lactobacillus_rhamnosus -0.621785 -0.824453
## Streptococcus_anginosus -0.621785 -0.824453
## Streptococcus_australis -0.621785 -0.824453
## Streptococcus_cristatus -0.621785 -0.824453
## Streptococcus_gordonii -0.621785 -0.824453
## Streptococcus_infantis -0.621785 -0.824453
## Streptococcus_milleri -0.621785 -0.824453
## Streptococcus_mitis -0.621785 -0.824453
## Streptococcus_oralis -0.621785 -0.824453
## Streptococcus_parasanguinis -0.621785 -0.824453
## Streptococcus_peroris -0.621785 -0.824453
## Streptococcus_pneumoniae -0.621785 -0.824453
## Streptococcus_pseudopneumoniae -0.621785 -0.824453
## Streptococcus_salivarius -0.621785 -0.824453
## Streptococcus_sanguinis -0.621785 -0.824453
## Streptococcus_sp_A12 -0.621785 -0.824453
## Streptococcus_sp_F0442 -0.621785 -0.824453
## Streptococcus_sp_HMSC034E03 -0.621785 -0.824453
## Streptococcus_sp_HMSC067H01 -0.621785 -0.824453
## Streptococcus_sp_HMSC071D03 -0.621785 -0.824453
## Streptococcus_sp_HPH0090 -0.621785 -0.824453
## Streptococcus_sp_M334 -0.621785 -0.824453
## Streptococcus_vestibularis -0.621785 -0.824453
## Eubacterium_brachy -0.621785 -0.824453
## Eubacterium_infirmum -0.621785 -0.824453
## Eubacterium_nodatum -0.621785 -0.824453
## Eubacterium_sulci -0.621785 -0.824453
## Mogibacterium_diversum -0.621785 -0.824453
## Mogibacterium_pumilum -0.621785 -0.824453
## Mogibacterium_timidum -0.621785 -0.824453
## Lachnoanaerobaculum_saburreum -0.621785 -0.824453
## Oribacterium_parvum -0.621785 -0.824453
## Oribacterium_sinus -0.621785 -0.824453
## Oribacterium_sp_oral_taxon_078 -0.621785 -0.824453
## Stomatobaculum_longum -0.621785 -0.824453
## Peptostreptococcus_stomatis -0.621785 -0.824453
## Bulleidia_extructa -0.621785 -0.824453
## Solobacterium_moorei -0.621785 -0.824453
## Limnochorda_pilosa -0.621785 -0.824453
## Veillonella_atypica -0.621785 -0.824453
## Veillonella_dispar -0.621785 -0.824453
## Veillonella_infantium -0.621785 -0.824453
## Veillonella_parvula -0.621785 -0.824453
## Veillonella_sp_T11011_6 -0.621785 -0.824453
## Anaerococcus_nagyae -0.621785 -0.824453
## Finegoldia_magna -0.621785 6.312030
## Parvimonas_micra -0.621785 -0.824453
## Parvimonas_sp_oral_taxon_110 -0.621785 -0.824453
## Parvimonas_sp_oral_taxon_393 -0.621785 -0.824453
## Fusobacterium_nucleatum -0.621785 -0.824453
## Leptotrichia_wadei -0.621785 -0.824453
## Gemmata_obscuriglobus -0.621785 -0.824453
## Paludisphaera_borealis -0.621785 -0.824453
## Achromobacter_xylosoxidans -0.621785 -0.824453
## Cupriavidus_sp 11.067536 11.463955
## Sutterella_parvirubra -0.621785 5.723766
## Anaerobiospirillum_thomasii -0.621785 5.673829
## Cardiobacterium_hominis -0.621785 -0.824453
## Cardiobacterium_valvarum -0.621785 -0.824453
## Alkalilimnicola_ehrlichii -0.621785 -0.824453
## Escherichia_coli -0.621785 -0.824453
## Thiohalorhabdus_denitrificans -0.621785 -0.824453
## Pseudomonas_aeruginosa -0.621785 -0.824453
## Acholeplasma_oculi -0.621785 -0.824453
## Candida_albicans -0.621785 -0.824453
## Candida_dubliniensis -0.621785 -0.824453
## Candida_parapsilosis -0.621785 -0.824453
## Malassezia_restricta -0.621785 6.188563
## Nakamurella_silvestris -0.621785 -0.824453
## Alloprevotella_tannerae -0.621785 -0.824453
## Prevotella_jejuni -0.621785 -0.824453
## Prevotella_pallens -0.621785 -0.824453
## Prevotella_salivae -0.621785 -0.824453
## Prevotella_sp_oral_taxon_306 -0.621785 -0.824453
## Prevotella_veroralis -0.621785 -0.824453
## Tannerella_sp_oral_taxon_808 -0.621785 -0.824453
## Tannerella_sp_oral_taxon_HOT_286 -0.621785 -0.824453
## Capnocytophaga_gingivalis -0.621785 -0.824453
## Bacillus_ginsengihumi -0.621785 -0.824453
## Listeria_floridensis -0.621785 -0.824453
## Agitococcus_lubricus -0.621785 -0.824453
## Lactobacillus_fermentum -0.621785 -0.824453
## Lactobacillus_gasseri -0.621785 -0.824453
## Sharpea_azabuensis -0.621785 -0.824453
## Streptococcus_mutans -0.621785 -0.824453
## Oribacterium_asaccharolyticum -0.621785 -0.824453
## Megasphaera_micronuciformis -0.621785 -0.824453
## Neisseria_flavescens -0.621785 -0.824453
## Neisseria_subflava -0.621785 -0.824453
## Stenotrophomonas_maltophilia -0.621785 -0.824453
## Stenotrophomonas_pavanii -0.621785 -0.824453
## Stenotrophomonas_rhizophila -0.621785 -0.824453
## Bacillus_intestinalis -0.621785 -0.824453
## Listeria_innocua -0.621785 -0.824453
## Listeria_monocytogenes -0.621785 -0.824453
## Staphylococcus_haemolyticus -0.621785 -0.824453
## Streptococcus_sobrinus -0.621785 -0.824453
## Eggerthia_catenaformis -0.621785 -0.824453
## Leptotrichia_sp_oral_taxon_498 -0.621785 -0.824453
## Rickettsia_felis -0.621785 -0.824453
## Haemophilus_parainfluenzae -0.621785 -0.824453
## Candida_orthopsilosis -0.621785 -0.824453
## Nannocystis_exedens -0.621785 -0.824453
## Campylobacter_concisus -0.621785 -0.824453
## Franconibacter_helveticus -0.621785 -0.824453
## Klebsiella_pneumoniae -0.621785 -0.824453
## Salmonella_enterica -0.621785 -0.824453
## Superficieibacter_electus -0.621785 -0.824453
## Pseudomonas_fluorescens -0.621785 -0.824453
## Saccharomyces_cerevisiae -0.621785 -0.824453
## S._cerevisiae x S._kudriavzevii -0.621785 -0.824453
## Saccharomyces_kudriavzevii -0.621785 -0.824453
## Cryptococcus_gattii_VGI -0.621785 -0.824453
## Cryptococcus_gattii_VGII -0.621785 -0.824453
## Cryptococcus_gattii_VGIII -0.621785 -0.824453
## Cryptococcus_neoformans -0.621785 -0.824453
## Listeria_marthii -0.621785 -0.824453
## Erwinia_persicina -0.621785 -0.824453
## Pseudomonas_formosensis -0.621785 -0.824453
## Pseudomonas_putida -0.621785 -0.824453
## NS_19_a_control NS_18_c_qiaamp
## Actinobaculum_sp_oral_taxon_183 -0.5377518 -1.019039
## Actinomyces_georgiae -0.5377518 -1.019039
## Actinomyces_graevenitzii -0.5377518 -1.019039
## Actinomyces_hongkongensis -0.5377518 -1.019039
## Actinomyces_johnsonii -0.5377518 -1.019039
## Actinomyces_massiliensis -0.5377518 -1.019039
## Actinomyces_meyeri -0.5377518 -1.019039
## Actinomyces_naeslundii -0.5377518 6.605580
## Actinomyces_odontolyticus -0.5377518 -1.019039
## Actinomyces_oris -0.5377518 -1.019039
## Actinomyces_sp_HMSC035G02 -0.5377518 -1.019039
## Actinomyces_sp_HPA0247 -0.5377518 -1.019039
## Actinomyces_sp_ICM47 -0.5377518 -1.019039
## Actinomyces_sp_S6_Spd3 -0.5377518 -1.019039
## Actinomyces_sp_oral_taxon_170 -0.5377518 -1.019039
## Actinomyces_sp_oral_taxon_180 -0.5377518 -1.019039
## Actinomyces_sp_oral_taxon_181 -0.5377518 -1.019039
## Actinomyces_sp_oral_taxon_414 -0.5377518 -1.019039
## Actinomyces_sp_oral_taxon_448 -0.5377518 6.781533
## Actinomyces_sp_oral_taxon_897 -0.5377518 -1.019039
## Actinomyces_viscosus -0.5377518 -1.019039
## Aeriscardovia_aeriphila 4.9387118 5.044746
## Alloscardovia_omnicolens -0.5377518 -1.019039
## Bifidobacterium_dentium -0.5377518 -1.019039
## Bifidobacterium_longum -0.5377518 -1.019039
## Scardovia_wiggsiae -0.5377518 -1.019039
## Corynebacterium_accolens 14.5665665 13.887608
## Corynebacterium_atypicum 7.1303419 7.037705
## Corynebacterium_durum -0.5377518 -1.019039
## Corynebacterium_matruchotii -0.5377518 -1.019039
## Corynebacterium_pseudodiphtheriticum 11.2862109 -1.019039
## Corynebacterium_pseudogenitalium 5.2613409 -1.019039
## Corynebacterium_tuberculostearicum -0.5377518 -1.019039
## Rothia_aeria -0.5377518 -1.019039
## Rothia_dentocariosa -0.5377518 -1.019039
## Rothia_mucilaginosa -0.5377518 -1.019039
## Cutibacterium_acnes 11.6169486 16.172112
## Cutibacterium_granulosum 8.2547978 13.514192
## Propionibacterium_humerusii -0.5377518 7.905484
## Propionibacterium_namnetense -0.5377518 8.727853
## Propionibacterium_acidifaciens -0.5377518 -1.019039
## Pseudopropionibacterium_propionicum -0.5377518 -1.019039
## Atopobium_deltae -0.5377518 -1.019039
## Atopobium_parvulum -0.5377518 -1.019039
## Atopobium_rimae -0.5377518 -1.019039
## Olsenella_profusa -0.5377518 -1.019039
## Olsenella_scatoligenes -0.5377518 -1.019039
## Olsenella_uli -0.5377518 -1.019039
## Collinsella_aerofaciens -0.5377518 4.549305
## Collinsella_intestinalis -0.5377518 3.024012
## Collinsella_stercoris -0.5377518 3.878801
## Enorma_massiliensis -0.5377518 -1.019039
## [Collinsella]_massiliensis -0.5377518 6.468694
## Asaccharobacter_celatus -0.5377518 -1.019039
## Denitrobacterium_detoxificans -0.5377518 -1.019039
## Enterorhabdus_caecimuris -0.5377518 -1.019039
## Slackia_exigua -0.5377518 -1.019039
## Slackia_isoflavoniconvertens -0.5377518 -1.019039
## Rubrobacter_radiotolerans -0.5377518 -1.019039
## Thermoleophilum_album -0.5377518 6.312676
## Porphyromonas_endodontalis -0.5377518 -1.019039
## Porphyromonas_somerae -0.5377518 -1.019039
## Prevotella_histicola -0.5377518 -1.019039
## Prevotella_melaninogenica -0.5377518 -1.019039
## Prevotella_oris -0.5377518 -1.019039
## Kouleothrix_aurantiaca -0.5377518 -1.019039
## Hydrogenibacillus_schlegelii -0.5377518 5.710785
## Gemella_asaccharolytica -0.5377518 9.054360
## Gemella_bergeri -0.5377518 -1.019039
## Gemella_haemolysans -0.5377518 -1.019039
## Gemella_morbillorum -0.5377518 -1.019039
## Gemella_sanguinis -0.5377518 -1.019039
## Brochothrix_campestris -0.5377518 -1.019039
## Staphylococcus_argenteus -0.5377518 -1.019039
## Staphylococcus_aureus -0.5377518 -1.019039
## Staphylococcus_epidermidis 9.8727040 7.934988
## Staphylococcus_schweitzeri -0.5377518 -1.019039
## Abiotrophia_defectiva -0.5377518 -1.019039
## Abiotrophia_sp_HMSC24B09 -0.5377518 -1.019039
## Dolosigranulum_pigrum 12.4943389 -1.019039
## Granulicatella_adiacens -0.5377518 -1.019039
## Granulicatella_elegans -0.5377518 -1.019039
## Enterococcus_faecalis -0.5377518 -1.019039
## Lactobacillus_rhamnosus -0.5377518 -1.019039
## Streptococcus_anginosus -0.5377518 -1.019039
## Streptococcus_australis -0.5377518 -1.019039
## Streptococcus_cristatus -0.5377518 -1.019039
## Streptococcus_gordonii -0.5377518 5.547633
## Streptococcus_infantis -0.5377518 -1.019039
## Streptococcus_milleri -0.5377518 -1.019039
## Streptococcus_mitis -0.5377518 -1.019039
## Streptococcus_oralis -0.5377518 -1.019039
## Streptococcus_parasanguinis -0.5377518 -1.019039
## Streptococcus_peroris -0.5377518 -1.019039
## Streptococcus_pneumoniae -0.5377518 -1.019039
## Streptococcus_pseudopneumoniae -0.5377518 -1.019039
## Streptococcus_salivarius -0.5377518 -1.019039
## Streptococcus_sanguinis -0.5377518 -1.019039
## Streptococcus_sp_A12 -0.5377518 -1.019039
## Streptococcus_sp_F0442 -0.5377518 -1.019039
## Streptococcus_sp_HMSC034E03 -0.5377518 -1.019039
## Streptococcus_sp_HMSC067H01 -0.5377518 -1.019039
## Streptococcus_sp_HMSC071D03 -0.5377518 -1.019039
## Streptococcus_sp_HPH0090 -0.5377518 -1.019039
## Streptococcus_sp_M334 -0.5377518 -1.019039
## Streptococcus_vestibularis -0.5377518 -1.019039
## Eubacterium_brachy -0.5377518 -1.019039
## Eubacterium_infirmum -0.5377518 -1.019039
## Eubacterium_nodatum -0.5377518 -1.019039
## Eubacterium_sulci -0.5377518 -1.019039
## Mogibacterium_diversum -0.5377518 -1.019039
## Mogibacterium_pumilum -0.5377518 -1.019039
## Mogibacterium_timidum -0.5377518 -1.019039
## Lachnoanaerobaculum_saburreum -0.5377518 -1.019039
## Oribacterium_parvum -0.5377518 -1.019039
## Oribacterium_sinus -0.5377518 -1.019039
## Oribacterium_sp_oral_taxon_078 -0.5377518 -1.019039
## Stomatobaculum_longum -0.5377518 -1.019039
## Peptostreptococcus_stomatis -0.5377518 -1.019039
## Bulleidia_extructa -0.5377518 -1.019039
## Solobacterium_moorei -0.5377518 -1.019039
## Limnochorda_pilosa -0.5377518 5.337068
## Veillonella_atypica -0.5377518 -1.019039
## Veillonella_dispar -0.5377518 -1.019039
## Veillonella_infantium -0.5377518 -1.019039
## Veillonella_parvula -0.5377518 -1.019039
## Veillonella_sp_T11011_6 -0.5377518 -1.019039
## Anaerococcus_nagyae -0.5377518 10.539710
## Finegoldia_magna -0.5377518 -1.019039
## Parvimonas_micra -0.5377518 -1.019039
## Parvimonas_sp_oral_taxon_110 -0.5377518 -1.019039
## Parvimonas_sp_oral_taxon_393 -0.5377518 -1.019039
## Fusobacterium_nucleatum -0.5377518 -1.019039
## Leptotrichia_wadei -0.5377518 -1.019039
## Gemmata_obscuriglobus -0.5377518 -1.019039
## Paludisphaera_borealis -0.5377518 -1.019039
## Achromobacter_xylosoxidans -0.5377518 -1.019039
## Cupriavidus_sp 10.6494574 10.880766
## Sutterella_parvirubra -0.5377518 5.035400
## Anaerobiospirillum_thomasii -0.5377518 -1.019039
## Cardiobacterium_hominis -0.5377518 -1.019039
## Cardiobacterium_valvarum -0.5377518 -1.019039
## Alkalilimnicola_ehrlichii -0.5377518 -1.019039
## Escherichia_coli -0.5377518 -1.019039
## Thiohalorhabdus_denitrificans -0.5377518 -1.019039
## Pseudomonas_aeruginosa -0.5377518 -1.019039
## Acholeplasma_oculi -0.5377518 -1.019039
## Candida_albicans -0.5377518 -1.019039
## Candida_dubliniensis -0.5377518 -1.019039
## Candida_parapsilosis -0.5377518 -1.019039
## Malassezia_restricta 7.1769257 13.476057
## Nakamurella_silvestris -0.5377518 -1.019039
## Alloprevotella_tannerae -0.5377518 -1.019039
## Prevotella_jejuni -0.5377518 -1.019039
## Prevotella_pallens -0.5377518 -1.019039
## Prevotella_salivae -0.5377518 -1.019039
## Prevotella_sp_oral_taxon_306 -0.5377518 -1.019039
## Prevotella_veroralis -0.5377518 -1.019039
## Tannerella_sp_oral_taxon_808 -0.5377518 -1.019039
## Tannerella_sp_oral_taxon_HOT_286 -0.5377518 -1.019039
## Capnocytophaga_gingivalis -0.5377518 -1.019039
## Bacillus_ginsengihumi -0.5377518 -1.019039
## Listeria_floridensis -0.5377518 -1.019039
## Agitococcus_lubricus -0.5377518 -1.019039
## Lactobacillus_fermentum -0.5377518 -1.019039
## Lactobacillus_gasseri -0.5377518 -1.019039
## Sharpea_azabuensis -0.5377518 -1.019039
## Streptococcus_mutans -0.5377518 -1.019039
## Oribacterium_asaccharolyticum -0.5377518 -1.019039
## Megasphaera_micronuciformis -0.5377518 -1.019039
## Neisseria_flavescens -0.5377518 -1.019039
## Neisseria_subflava -0.5377518 -1.019039
## Stenotrophomonas_maltophilia -0.5377518 -1.019039
## Stenotrophomonas_pavanii -0.5377518 -1.019039
## Stenotrophomonas_rhizophila -0.5377518 -1.019039
## Bacillus_intestinalis -0.5377518 -1.019039
## Listeria_innocua -0.5377518 -1.019039
## Listeria_monocytogenes -0.5377518 -1.019039
## Staphylococcus_haemolyticus -0.5377518 -1.019039
## Streptococcus_sobrinus -0.5377518 -1.019039
## Eggerthia_catenaformis -0.5377518 -1.019039
## Leptotrichia_sp_oral_taxon_498 -0.5377518 -1.019039
## Rickettsia_felis -0.5377518 -1.019039
## Haemophilus_parainfluenzae -0.5377518 -1.019039
## Candida_orthopsilosis -0.5377518 -1.019039
## Nannocystis_exedens -0.5377518 -1.019039
## Campylobacter_concisus -0.5377518 -1.019039
## Franconibacter_helveticus -0.5377518 -1.019039
## Klebsiella_pneumoniae -0.5377518 -1.019039
## Salmonella_enterica -0.5377518 -1.019039
## Superficieibacter_electus -0.5377518 -1.019039
## Pseudomonas_fluorescens -0.5377518 -1.019039
## Saccharomyces_cerevisiae -0.5377518 -1.019039
## S._cerevisiae x S._kudriavzevii -0.5377518 -1.019039
## Saccharomyces_kudriavzevii -0.5377518 -1.019039
## Cryptococcus_gattii_VGI -0.5377518 -1.019039
## Cryptococcus_gattii_VGII -0.5377518 -1.019039
## Cryptococcus_gattii_VGIII -0.5377518 -1.019039
## Cryptococcus_neoformans -0.5377518 -1.019039
## Listeria_marthii -0.5377518 -1.019039
## Erwinia_persicina -0.5377518 -1.019039
## Pseudomonas_formosensis -0.5377518 -1.019039
## Pseudomonas_putida -0.5377518 -1.019039
## NS_18_b_lyPMA NS_18_a_control
## Actinobaculum_sp_oral_taxon_183 -0.2108685 -0.4842898
## Actinomyces_georgiae -0.2108685 -0.4842898
## Actinomyces_graevenitzii -0.2108685 -0.4842898
## Actinomyces_hongkongensis -0.2108685 -0.4842898
## Actinomyces_johnsonii -0.2108685 -0.4842898
## Actinomyces_massiliensis -0.2108685 -0.4842898
## Actinomyces_meyeri -0.2108685 -0.4842898
## Actinomyces_naeslundii -0.2108685 -0.4842898
## Actinomyces_odontolyticus -0.2108685 -0.4842898
## Actinomyces_oris -0.2108685 -0.4842898
## Actinomyces_sp_HMSC035G02 -0.2108685 -0.4842898
## Actinomyces_sp_HPA0247 -0.2108685 -0.4842898
## Actinomyces_sp_ICM47 -0.2108685 -0.4842898
## Actinomyces_sp_S6_Spd3 -0.2108685 -0.4842898
## Actinomyces_sp_oral_taxon_170 -0.2108685 -0.4842898
## Actinomyces_sp_oral_taxon_180 -0.2108685 -0.4842898
## Actinomyces_sp_oral_taxon_181 -0.2108685 -0.4842898
## Actinomyces_sp_oral_taxon_414 -0.2108685 -0.4842898
## Actinomyces_sp_oral_taxon_448 -0.2108685 -0.4842898
## Actinomyces_sp_oral_taxon_897 -0.2108685 -0.4842898
## Actinomyces_viscosus -0.2108685 -0.4842898
## Aeriscardovia_aeriphila -0.2108685 -0.4842898
## Alloscardovia_omnicolens -0.2108685 -0.4842898
## Bifidobacterium_dentium -0.2108685 -0.4842898
## Bifidobacterium_longum -0.2108685 -0.4842898
## Scardovia_wiggsiae -0.2108685 -0.4842898
## Corynebacterium_accolens 7.0753233 12.4441320
## Corynebacterium_atypicum -0.2108685 4.7521522
## Corynebacterium_durum -0.2108685 -0.4842898
## Corynebacterium_matruchotii -0.2108685 -0.4842898
## Corynebacterium_pseudodiphtheriticum -0.2108685 -0.4842898
## Corynebacterium_pseudogenitalium -0.2108685 -0.4842898
## Corynebacterium_tuberculostearicum -0.2108685 -0.4842898
## Rothia_aeria -0.2108685 -0.4842898
## Rothia_dentocariosa -0.2108685 -0.4842898
## Rothia_mucilaginosa -0.2108685 -0.4842898
## Cutibacterium_acnes 12.0993705 12.9777250
## Cutibacterium_granulosum -0.2108685 10.3980688
## Propionibacterium_humerusii -0.2108685 5.9308072
## Propionibacterium_namnetense -0.2108685 4.2161906
## Propionibacterium_acidifaciens -0.2108685 -0.4842898
## Pseudopropionibacterium_propionicum -0.2108685 -0.4842898
## Atopobium_deltae -0.2108685 -0.4842898
## Atopobium_parvulum -0.2108685 -0.4842898
## Atopobium_rimae -0.2108685 -0.4842898
## Olsenella_profusa -0.2108685 -0.4842898
## Olsenella_scatoligenes -0.2108685 -0.4842898
## Olsenella_uli -0.2108685 -0.4842898
## Collinsella_aerofaciens -0.2108685 -0.4842898
## Collinsella_intestinalis -0.2108685 -0.4842898
## Collinsella_stercoris -0.2108685 -0.4842898
## Enorma_massiliensis -0.2108685 -0.4842898
## [Collinsella]_massiliensis -0.2108685 -0.4842898
## Asaccharobacter_celatus -0.2108685 -0.4842898
## Denitrobacterium_detoxificans -0.2108685 -0.4842898
## Enterorhabdus_caecimuris -0.2108685 -0.4842898
## Slackia_exigua -0.2108685 -0.4842898
## Slackia_isoflavoniconvertens -0.2108685 -0.4842898
## Rubrobacter_radiotolerans -0.2108685 -0.4842898
## Thermoleophilum_album -0.2108685 -0.4842898
## Porphyromonas_endodontalis -0.2108685 -0.4842898
## Porphyromonas_somerae -0.2108685 -0.4842898
## Prevotella_histicola -0.2108685 -0.4842898
## Prevotella_melaninogenica -0.2108685 -0.4842898
## Prevotella_oris -0.2108685 -0.4842898
## Kouleothrix_aurantiaca -0.2108685 -0.4842898
## Hydrogenibacillus_schlegelii -0.2108685 -0.4842898
## Gemella_asaccharolytica -0.2108685 6.4353941
## Gemella_bergeri -0.2108685 -0.4842898
## Gemella_haemolysans -0.2108685 -0.4842898
## Gemella_morbillorum -0.2108685 -0.4842898
## Gemella_sanguinis -0.2108685 -0.4842898
## Brochothrix_campestris -0.2108685 -0.4842898
## Staphylococcus_argenteus -0.2108685 -0.4842898
## Staphylococcus_aureus -0.2108685 -0.4842898
## Staphylococcus_epidermidis -0.2108685 8.2240195
## Staphylococcus_schweitzeri -0.2108685 -0.4842898
## Abiotrophia_defectiva -0.2108685 -0.4842898
## Abiotrophia_sp_HMSC24B09 -0.2108685 -0.4842898
## Dolosigranulum_pigrum -0.2108685 -0.4842898
## Granulicatella_adiacens -0.2108685 -0.4842898
## Granulicatella_elegans -0.2108685 -0.4842898
## Enterococcus_faecalis -0.2108685 -0.4842898
## Lactobacillus_rhamnosus -0.2108685 -0.4842898
## Streptococcus_anginosus -0.2108685 -0.4842898
## Streptococcus_australis -0.2108685 -0.4842898
## Streptococcus_cristatus -0.2108685 -0.4842898
## Streptococcus_gordonii -0.2108685 -0.4842898
## Streptococcus_infantis -0.2108685 -0.4842898
## Streptococcus_milleri -0.2108685 -0.4842898
## Streptococcus_mitis -0.2108685 -0.4842898
## Streptococcus_oralis -0.2108685 -0.4842898
## Streptococcus_parasanguinis -0.2108685 -0.4842898
## Streptococcus_peroris -0.2108685 -0.4842898
## Streptococcus_pneumoniae -0.2108685 -0.4842898
## Streptococcus_pseudopneumoniae -0.2108685 -0.4842898
## Streptococcus_salivarius -0.2108685 -0.4842898
## Streptococcus_sanguinis -0.2108685 -0.4842898
## Streptococcus_sp_A12 -0.2108685 -0.4842898
## Streptococcus_sp_F0442 -0.2108685 -0.4842898
## Streptococcus_sp_HMSC034E03 -0.2108685 -0.4842898
## Streptococcus_sp_HMSC067H01 -0.2108685 -0.4842898
## Streptococcus_sp_HMSC071D03 -0.2108685 -0.4842898
## Streptococcus_sp_HPH0090 -0.2108685 -0.4842898
## Streptococcus_sp_M334 -0.2108685 -0.4842898
## Streptococcus_vestibularis -0.2108685 -0.4842898
## Eubacterium_brachy -0.2108685 -0.4842898
## Eubacterium_infirmum -0.2108685 -0.4842898
## Eubacterium_nodatum -0.2108685 -0.4842898
## Eubacterium_sulci -0.2108685 -0.4842898
## Mogibacterium_diversum -0.2108685 -0.4842898
## Mogibacterium_pumilum -0.2108685 -0.4842898
## Mogibacterium_timidum -0.2108685 -0.4842898
## Lachnoanaerobaculum_saburreum -0.2108685 -0.4842898
## Oribacterium_parvum -0.2108685 -0.4842898
## Oribacterium_sinus -0.2108685 -0.4842898
## Oribacterium_sp_oral_taxon_078 -0.2108685 -0.4842898
## Stomatobaculum_longum -0.2108685 -0.4842898
## Peptostreptococcus_stomatis -0.2108685 -0.4842898
## Bulleidia_extructa -0.2108685 -0.4842898
## Solobacterium_moorei -0.2108685 -0.4842898
## Limnochorda_pilosa -0.2108685 -0.4842898
## Veillonella_atypica -0.2108685 -0.4842898
## Veillonella_dispar -0.2108685 -0.4842898
## Veillonella_infantium -0.2108685 -0.4842898
## Veillonella_parvula -0.2108685 -0.4842898
## Veillonella_sp_T11011_6 -0.2108685 -0.4842898
## Anaerococcus_nagyae -0.2108685 8.1325677
## Finegoldia_magna -0.2108685 -0.4842898
## Parvimonas_micra -0.2108685 -0.4842898
## Parvimonas_sp_oral_taxon_110 -0.2108685 -0.4842898
## Parvimonas_sp_oral_taxon_393 -0.2108685 -0.4842898
## Fusobacterium_nucleatum -0.2108685 -0.4842898
## Leptotrichia_wadei -0.2108685 -0.4842898
## Gemmata_obscuriglobus -0.2108685 -0.4842898
## Paludisphaera_borealis -0.2108685 -0.4842898
## Achromobacter_xylosoxidans -0.2108685 -0.4842898
## Cupriavidus_sp 11.9837337 7.8590261
## Sutterella_parvirubra 6.1504340 -0.4842898
## Anaerobiospirillum_thomasii -0.2108685 -0.4842898
## Cardiobacterium_hominis -0.2108685 -0.4842898
## Cardiobacterium_valvarum -0.2108685 -0.4842898
## Alkalilimnicola_ehrlichii -0.2108685 -0.4842898
## Escherichia_coli -0.2108685 -0.4842898
## Thiohalorhabdus_denitrificans -0.2108685 -0.4842898
## Pseudomonas_aeruginosa -0.2108685 -0.4842898
## Acholeplasma_oculi -0.2108685 -0.4842898
## Candida_albicans -0.2108685 -0.4842898
## Candida_dubliniensis -0.2108685 -0.4842898
## Candida_parapsilosis -0.2108685 -0.4842898
## Malassezia_restricta 4.4430919 11.6135571
## Nakamurella_silvestris -0.2108685 -0.4842898
## Alloprevotella_tannerae -0.2108685 -0.4842898
## Prevotella_jejuni -0.2108685 -0.4842898
## Prevotella_pallens -0.2108685 -0.4842898
## Prevotella_salivae -0.2108685 -0.4842898
## Prevotella_sp_oral_taxon_306 -0.2108685 -0.4842898
## Prevotella_veroralis -0.2108685 -0.4842898
## Tannerella_sp_oral_taxon_808 -0.2108685 -0.4842898
## Tannerella_sp_oral_taxon_HOT_286 -0.2108685 -0.4842898
## Capnocytophaga_gingivalis -0.2108685 -0.4842898
## Bacillus_ginsengihumi -0.2108685 -0.4842898
## Listeria_floridensis -0.2108685 -0.4842898
## Agitococcus_lubricus -0.2108685 -0.4842898
## Lactobacillus_fermentum -0.2108685 -0.4842898
## Lactobacillus_gasseri -0.2108685 -0.4842898
## Sharpea_azabuensis -0.2108685 -0.4842898
## Streptococcus_mutans -0.2108685 -0.4842898
## Oribacterium_asaccharolyticum -0.2108685 -0.4842898
## Megasphaera_micronuciformis -0.2108685 -0.4842898
## Neisseria_flavescens -0.2108685 -0.4842898
## Neisseria_subflava -0.2108685 -0.4842898
## Stenotrophomonas_maltophilia -0.2108685 -0.4842898
## Stenotrophomonas_pavanii -0.2108685 -0.4842898
## Stenotrophomonas_rhizophila -0.2108685 -0.4842898
## Bacillus_intestinalis -0.2108685 -0.4842898
## Listeria_innocua -0.2108685 -0.4842898
## Listeria_monocytogenes -0.2108685 -0.4842898
## Staphylococcus_haemolyticus -0.2108685 -0.4842898
## Streptococcus_sobrinus -0.2108685 -0.4842898
## Eggerthia_catenaformis -0.2108685 -0.4842898
## Leptotrichia_sp_oral_taxon_498 -0.2108685 -0.4842898
## Rickettsia_felis -0.2108685 -0.4842898
## Haemophilus_parainfluenzae -0.2108685 -0.4842898
## Candida_orthopsilosis -0.2108685 -0.4842898
## Nannocystis_exedens -0.2108685 -0.4842898
## Campylobacter_concisus -0.2108685 -0.4842898
## Franconibacter_helveticus -0.2108685 -0.4842898
## Klebsiella_pneumoniae -0.2108685 -0.4842898
## Salmonella_enterica -0.2108685 -0.4842898
## Superficieibacter_electus -0.2108685 -0.4842898
## Pseudomonas_fluorescens -0.2108685 -0.4842898
## Saccharomyces_cerevisiae -0.2108685 -0.4842898
## S._cerevisiae x S._kudriavzevii -0.2108685 -0.4842898
## Saccharomyces_kudriavzevii -0.2108685 -0.4842898
## Cryptococcus_gattii_VGI -0.2108685 -0.4842898
## Cryptococcus_gattii_VGII -0.2108685 -0.4842898
## Cryptococcus_gattii_VGIII -0.2108685 -0.4842898
## Cryptococcus_neoformans -0.2108685 -0.4842898
## Listeria_marthii -0.2108685 -0.4842898
## Erwinia_persicina -0.2108685 -0.4842898
## Pseudomonas_formosensis -0.2108685 -0.4842898
## Pseudomonas_putida -0.2108685 -0.4842898
## NS_17_c_qiaamp NS_17_b_lyPMA
## Actinobaculum_sp_oral_taxon_183 -0.6135353 -0.3817806
## Actinomyces_georgiae -0.6135353 -0.3817806
## Actinomyces_graevenitzii -0.6135353 -0.3817806
## Actinomyces_hongkongensis -0.6135353 -0.3817806
## Actinomyces_johnsonii -0.6135353 -0.3817806
## Actinomyces_massiliensis -0.6135353 -0.3817806
## Actinomyces_meyeri -0.6135353 -0.3817806
## Actinomyces_naeslundii -0.6135353 -0.3817806
## Actinomyces_odontolyticus -0.6135353 -0.3817806
## Actinomyces_oris -0.6135353 -0.3817806
## Actinomyces_sp_HMSC035G02 -0.6135353 -0.3817806
## Actinomyces_sp_HPA0247 -0.6135353 -0.3817806
## Actinomyces_sp_ICM47 -0.6135353 -0.3817806
## Actinomyces_sp_S6_Spd3 -0.6135353 -0.3817806
## Actinomyces_sp_oral_taxon_170 -0.6135353 -0.3817806
## Actinomyces_sp_oral_taxon_180 -0.6135353 -0.3817806
## Actinomyces_sp_oral_taxon_181 -0.6135353 -0.3817806
## Actinomyces_sp_oral_taxon_414 -0.6135353 -0.3817806
## Actinomyces_sp_oral_taxon_448 -0.6135353 -0.3817806
## Actinomyces_sp_oral_taxon_897 -0.6135353 -0.3817806
## Actinomyces_viscosus -0.6135353 -0.3817806
## Aeriscardovia_aeriphila 5.2241951 -0.3817806
## Alloscardovia_omnicolens -0.6135353 -0.3817806
## Bifidobacterium_dentium -0.6135353 -0.3817806
## Bifidobacterium_longum -0.6135353 -0.3817806
## Scardovia_wiggsiae -0.6135353 -0.3817806
## Corynebacterium_accolens 15.0150168 12.1769118
## Corynebacterium_atypicum 6.9376515 2.5626584
## Corynebacterium_durum -0.6135353 -0.3817806
## Corynebacterium_matruchotii -0.6135353 -0.3817806
## Corynebacterium_pseudodiphtheriticum -0.6135353 -0.3817806
## Corynebacterium_pseudogenitalium 8.8798765 6.6038612
## Corynebacterium_tuberculostearicum -0.6135353 -0.3817806
## Rothia_aeria -0.6135353 -0.3817806
## Rothia_dentocariosa -0.6135353 -0.3817806
## Rothia_mucilaginosa -0.6135353 -0.3817806
## Cutibacterium_acnes 15.0459116 11.2374580
## Cutibacterium_granulosum -0.6135353 -0.3817806
## Propionibacterium_humerusii 6.4173221 -0.3817806
## Propionibacterium_namnetense -0.6135353 -0.3817806
## Propionibacterium_acidifaciens -0.6135353 -0.3817806
## Pseudopropionibacterium_propionicum -0.6135353 -0.3817806
## Atopobium_deltae -0.6135353 -0.3817806
## Atopobium_parvulum -0.6135353 -0.3817806
## Atopobium_rimae -0.6135353 -0.3817806
## Olsenella_profusa -0.6135353 -0.3817806
## Olsenella_scatoligenes -0.6135353 -0.3817806
## Olsenella_uli -0.6135353 -0.3817806
## Collinsella_aerofaciens -0.6135353 -0.3817806
## Collinsella_intestinalis -0.6135353 -0.3817806
## Collinsella_stercoris -0.6135353 -0.3817806
## Enorma_massiliensis -0.6135353 -0.3817806
## [Collinsella]_massiliensis 5.0140858 -0.3817806
## Asaccharobacter_celatus -0.6135353 -0.3817806
## Denitrobacterium_detoxificans -0.6135353 -0.3817806
## Enterorhabdus_caecimuris -0.6135353 -0.3817806
## Slackia_exigua -0.6135353 -0.3817806
## Slackia_isoflavoniconvertens -0.6135353 -0.3817806
## Rubrobacter_radiotolerans -0.6135353 -0.3817806
## Thermoleophilum_album 4.3700713 -0.3817806
## Porphyromonas_endodontalis -0.6135353 -0.3817806
## Porphyromonas_somerae -0.6135353 -0.3817806
## Prevotella_histicola -0.6135353 -0.3817806
## Prevotella_melaninogenica -0.6135353 -0.3817806
## Prevotella_oris -0.6135353 -0.3817806
## Kouleothrix_aurantiaca -0.6135353 -0.3817806
## Hydrogenibacillus_schlegelii -0.6135353 -0.3817806
## Gemella_asaccharolytica -0.6135353 -0.3817806
## Gemella_bergeri -0.6135353 -0.3817806
## Gemella_haemolysans -0.6135353 -0.3817806
## Gemella_morbillorum -0.6135353 -0.3817806
## Gemella_sanguinis 5.1794783 -0.3817806
## Brochothrix_campestris -0.6135353 -0.3817806
## Staphylococcus_argenteus -0.6135353 -0.3817806
## Staphylococcus_aureus -0.6135353 -0.3817806
## Staphylococcus_epidermidis 12.9929836 10.1381891
## Staphylococcus_schweitzeri -0.6135353 -0.3817806
## Abiotrophia_defectiva -0.6135353 -0.3817806
## Abiotrophia_sp_HMSC24B09 -0.6135353 -0.3817806
## Dolosigranulum_pigrum 13.6653305 14.7045669
## Granulicatella_adiacens -0.6135353 -0.3817806
## Granulicatella_elegans -0.6135353 -0.3817806
## Enterococcus_faecalis -0.6135353 -0.3817806
## Lactobacillus_rhamnosus -0.6135353 -0.3817806
## Streptococcus_anginosus -0.6135353 -0.3817806
## Streptococcus_australis -0.6135353 -0.3817806
## Streptococcus_cristatus -0.6135353 -0.3817806
## Streptococcus_gordonii -0.6135353 -0.3817806
## Streptococcus_infantis -0.6135353 -0.3817806
## Streptococcus_milleri -0.6135353 -0.3817806
## Streptococcus_mitis -0.6135353 -0.3817806
## Streptococcus_oralis -0.6135353 -0.3817806
## Streptococcus_parasanguinis -0.6135353 -0.3817806
## Streptococcus_peroris -0.6135353 -0.3817806
## Streptococcus_pneumoniae -0.6135353 -0.3817806
## Streptococcus_pseudopneumoniae -0.6135353 -0.3817806
## Streptococcus_salivarius -0.6135353 -0.3817806
## Streptococcus_sanguinis -0.6135353 -0.3817806
## Streptococcus_sp_A12 -0.6135353 -0.3817806
## Streptococcus_sp_F0442 -0.6135353 -0.3817806
## Streptococcus_sp_HMSC034E03 -0.6135353 -0.3817806
## Streptococcus_sp_HMSC067H01 -0.6135353 -0.3817806
## Streptococcus_sp_HMSC071D03 -0.6135353 -0.3817806
## Streptococcus_sp_HPH0090 -0.6135353 -0.3817806
## Streptococcus_sp_M334 -0.6135353 -0.3817806
## Streptococcus_vestibularis -0.6135353 -0.3817806
## Eubacterium_brachy -0.6135353 -0.3817806
## Eubacterium_infirmum -0.6135353 -0.3817806
## Eubacterium_nodatum -0.6135353 -0.3817806
## Eubacterium_sulci -0.6135353 -0.3817806
## Mogibacterium_diversum -0.6135353 -0.3817806
## Mogibacterium_pumilum -0.6135353 -0.3817806
## Mogibacterium_timidum -0.6135353 -0.3817806
## Lachnoanaerobaculum_saburreum -0.6135353 -0.3817806
## Oribacterium_parvum -0.6135353 -0.3817806
## Oribacterium_sinus -0.6135353 -0.3817806
## Oribacterium_sp_oral_taxon_078 -0.6135353 -0.3817806
## Stomatobaculum_longum -0.6135353 -0.3817806
## Peptostreptococcus_stomatis -0.6135353 -0.3817806
## Bulleidia_extructa -0.6135353 -0.3817806
## Solobacterium_moorei -0.6135353 -0.3817806
## Limnochorda_pilosa -0.6135353 -0.3817806
## Veillonella_atypica -0.6135353 -0.3817806
## Veillonella_dispar -0.6135353 -0.3817806
## Veillonella_infantium -0.6135353 -0.3817806
## Veillonella_parvula -0.6135353 -0.3817806
## Veillonella_sp_T11011_6 -0.6135353 -0.3817806
## Anaerococcus_nagyae -0.6135353 -0.3817806
## Finegoldia_magna -0.6135353 -0.3817806
## Parvimonas_micra -0.6135353 -0.3817806
## Parvimonas_sp_oral_taxon_110 -0.6135353 -0.3817806
## Parvimonas_sp_oral_taxon_393 -0.6135353 -0.3817806
## Fusobacterium_nucleatum -0.6135353 -0.3817806
## Leptotrichia_wadei -0.6135353 -0.3817806
## Gemmata_obscuriglobus -0.6135353 -0.3817806
## Paludisphaera_borealis -0.6135353 -0.3817806
## Achromobacter_xylosoxidans -0.6135353 -0.3817806
## Cupriavidus_sp 12.0889577 12.1020412
## Sutterella_parvirubra 5.7408347 4.9215243
## Anaerobiospirillum_thomasii -0.6135353 -0.3817806
## Cardiobacterium_hominis -0.6135353 -0.3817806
## Cardiobacterium_valvarum -0.6135353 -0.3817806
## Alkalilimnicola_ehrlichii -0.6135353 -0.3817806
## Escherichia_coli -0.6135353 -0.3817806
## Thiohalorhabdus_denitrificans -0.6135353 -0.3817806
## Pseudomonas_aeruginosa -0.6135353 -0.3817806
## Acholeplasma_oculi -0.6135353 -0.3817806
## Candida_albicans -0.6135353 -0.3817806
## Candida_dubliniensis -0.6135353 -0.3817806
## Candida_parapsilosis -0.6135353 -0.3817806
## Malassezia_restricta -0.6135353 -0.3817806
## Nakamurella_silvestris -0.6135353 -0.3817806
## Alloprevotella_tannerae -0.6135353 -0.3817806
## Prevotella_jejuni -0.6135353 -0.3817806
## Prevotella_pallens -0.6135353 -0.3817806
## Prevotella_salivae -0.6135353 -0.3817806
## Prevotella_sp_oral_taxon_306 -0.6135353 -0.3817806
## Prevotella_veroralis -0.6135353 -0.3817806
## Tannerella_sp_oral_taxon_808 -0.6135353 -0.3817806
## Tannerella_sp_oral_taxon_HOT_286 -0.6135353 -0.3817806
## Capnocytophaga_gingivalis -0.6135353 -0.3817806
## Bacillus_ginsengihumi -0.6135353 -0.3817806
## Listeria_floridensis -0.6135353 -0.3817806
## Agitococcus_lubricus -0.6135353 -0.3817806
## Lactobacillus_fermentum -0.6135353 -0.3817806
## Lactobacillus_gasseri -0.6135353 -0.3817806
## Sharpea_azabuensis -0.6135353 -0.3817806
## Streptococcus_mutans -0.6135353 -0.3817806
## Oribacterium_asaccharolyticum -0.6135353 -0.3817806
## Megasphaera_micronuciformis -0.6135353 -0.3817806
## Neisseria_flavescens -0.6135353 -0.3817806
## Neisseria_subflava -0.6135353 -0.3817806
## Stenotrophomonas_maltophilia -0.6135353 -0.3817806
## Stenotrophomonas_pavanii -0.6135353 -0.3817806
## Stenotrophomonas_rhizophila -0.6135353 -0.3817806
## Bacillus_intestinalis -0.6135353 -0.3817806
## Listeria_innocua -0.6135353 -0.3817806
## Listeria_monocytogenes -0.6135353 -0.3817806
## Staphylococcus_haemolyticus -0.6135353 -0.3817806
## Streptococcus_sobrinus -0.6135353 -0.3817806
## Eggerthia_catenaformis -0.6135353 -0.3817806
## Leptotrichia_sp_oral_taxon_498 -0.6135353 -0.3817806
## Rickettsia_felis -0.6135353 -0.3817806
## Haemophilus_parainfluenzae -0.6135353 -0.3817806
## Candida_orthopsilosis -0.6135353 -0.3817806
## Nannocystis_exedens -0.6135353 -0.3817806
## Campylobacter_concisus -0.6135353 -0.3817806
## Franconibacter_helveticus -0.6135353 -0.3817806
## Klebsiella_pneumoniae -0.6135353 -0.3817806
## Salmonella_enterica -0.6135353 -0.3817806
## Superficieibacter_electus -0.6135353 -0.3817806
## Pseudomonas_fluorescens -0.6135353 -0.3817806
## Saccharomyces_cerevisiae -0.6135353 -0.3817806
## S._cerevisiae x S._kudriavzevii -0.6135353 -0.3817806
## Saccharomyces_kudriavzevii -0.6135353 -0.3817806
## Cryptococcus_gattii_VGI -0.6135353 -0.3817806
## Cryptococcus_gattii_VGII -0.6135353 -0.3817806
## Cryptococcus_gattii_VGIII -0.6135353 -0.3817806
## Cryptococcus_neoformans -0.6135353 -0.3817806
## Listeria_marthii -0.6135353 -0.3817806
## Erwinia_persicina -0.6135353 -0.3817806
## Pseudomonas_formosensis -0.6135353 -0.3817806
## Pseudomonas_putida -0.6135353 -0.3817806
## NS_17_a_control CFB_e_qiaamp CFB_e_molysis
## Actinobaculum_sp_oral_taxon_183 -0.307487 5.124143307 6.93124863
## Actinomyces_georgiae -0.307487 -4.336099386 0.29315791
## Actinomyces_graevenitzii -0.307487 7.026351966 7.39130160
## Actinomyces_hongkongensis -0.307487 -4.336099386 -0.06426525
## Actinomyces_johnsonii -0.307487 6.010919475 5.57540442
## Actinomyces_massiliensis -0.307487 3.832670438 3.37919022
## Actinomyces_meyeri -0.307487 1.550004645 1.84926132
## Actinomyces_naeslundii -0.307487 5.170040026 5.22251879
## Actinomyces_odontolyticus -0.307487 9.249787923 8.73335268
## Actinomyces_oris -0.307487 8.277985122 8.61724355
## Actinomyces_sp_HMSC035G02 -0.307487 6.190246994 5.58485130
## Actinomyces_sp_HPA0247 -0.307487 6.421441727 5.53246421
## Actinomyces_sp_ICM47 -0.307487 6.576713764 6.43648256
## Actinomyces_sp_S6_Spd3 -0.307487 5.129193234 4.23140983
## Actinomyces_sp_oral_taxon_170 -0.307487 1.890437283 2.72419608
## Actinomyces_sp_oral_taxon_180 -0.307487 4.295314949 3.93311107
## Actinomyces_sp_oral_taxon_181 -0.307487 5.131128743 5.37454927
## Actinomyces_sp_oral_taxon_414 -0.307487 -4.336099386 1.46153067
## Actinomyces_sp_oral_taxon_448 -0.307487 -4.336099386 0.47635169
## Actinomyces_sp_oral_taxon_897 -0.307487 2.749802078 3.94004213
## Actinomyces_viscosus -0.307487 7.556624600 7.91335625
## Aeriscardovia_aeriphila -0.307487 3.169942792 2.87003743
## Alloscardovia_omnicolens -0.307487 3.505000379 3.42450057
## Bifidobacterium_dentium -0.307487 -4.336099386 0.61227777
## Bifidobacterium_longum -0.307487 6.195970159 6.00000027
## Scardovia_wiggsiae -0.307487 3.154988207 2.89828790
## Corynebacterium_accolens 12.219690 -4.336099386 -6.56855343
## Corynebacterium_atypicum -0.307487 -4.336099386 -0.93376382
## Corynebacterium_durum -0.307487 4.350836580 3.78864957
## Corynebacterium_matruchotii -0.307487 -4.336099386 2.03866327
## Corynebacterium_pseudodiphtheriticum -0.307487 -4.336099386 -6.56855343
## Corynebacterium_pseudogenitalium 6.523387 -4.336099386 -6.56855343
## Corynebacterium_tuberculostearicum -0.307487 -4.336099386 -6.56855343
## Rothia_aeria -0.307487 2.424315305 2.72382766
## Rothia_dentocariosa -0.307487 8.494533736 8.18554033
## Rothia_mucilaginosa -0.307487 10.305185336 9.29670901
## Cutibacterium_acnes 10.918929 3.171041694 1.17947510
## Cutibacterium_granulosum -0.307487 -4.336099386 -6.56855343
## Propionibacterium_humerusii -0.307487 -4.336099386 -6.56855343
## Propionibacterium_namnetense -0.307487 -4.336099386 -6.56855343
## Propionibacterium_acidifaciens -0.307487 3.022094367 2.70551264
## Pseudopropionibacterium_propionicum -0.307487 4.067252989 4.21956906
## Atopobium_deltae -0.307487 -4.336099386 -0.40523862
## Atopobium_parvulum -0.307487 5.195091842 5.14525362
## Atopobium_rimae -0.307487 4.332268633 4.16132203
## Olsenella_profusa -0.307487 3.679227923 3.68238163
## Olsenella_scatoligenes -0.307487 1.527531790 2.60895379
## Olsenella_uli -0.307487 2.983103073 3.13916252
## Collinsella_aerofaciens -0.307487 1.997180242 2.36207304
## Collinsella_intestinalis -0.307487 1.981065301 1.60361103
## Collinsella_stercoris -0.307487 2.410312742 1.62595208
## Enorma_massiliensis -0.307487 1.766459209 1.23814295
## [Collinsella]_massiliensis -0.307487 2.960991619 3.04765197
## Asaccharobacter_celatus -0.307487 -1.078002848 0.61985931
## Denitrobacterium_detoxificans -0.307487 -0.005366046 1.08066289
## Enterorhabdus_caecimuris -0.307487 -1.078002848 0.62061431
## Slackia_exigua -0.307487 3.844501562 4.17721227
## Slackia_isoflavoniconvertens -0.307487 0.834384609 2.37690953
## Rubrobacter_radiotolerans -0.307487 -4.336099386 -0.50709651
## Thermoleophilum_album -0.307487 2.069129072 2.00615367
## Porphyromonas_endodontalis -0.307487 4.654715880 0.85142650
## Porphyromonas_somerae -0.307487 5.315008886 3.33758062
## Prevotella_histicola -0.307487 2.618539479 4.35808625
## Prevotella_melaninogenica -0.307487 3.766789749 2.10444622
## Prevotella_oris -0.307487 2.674212481 -6.56855343
## Kouleothrix_aurantiaca -0.307487 -4.336099386 1.70120352
## Hydrogenibacillus_schlegelii -0.307487 2.136246908 1.07875541
## Gemella_asaccharolytica -0.307487 -4.336099386 -0.89179962
## Gemella_bergeri -0.307487 4.454778368 4.09788718
## Gemella_haemolysans -0.307487 6.778584816 6.99998441
## Gemella_morbillorum -0.307487 5.403338654 4.49219261
## Gemella_sanguinis -0.307487 7.801175012 7.14915575
## Brochothrix_campestris -0.307487 -4.336099386 -1.12181605
## Staphylococcus_argenteus -0.307487 -4.336099386 -6.56855343
## Staphylococcus_aureus -0.307487 -4.336099386 3.36919061
## Staphylococcus_epidermidis 9.599943 -4.336099386 0.39084509
## Staphylococcus_schweitzeri -0.307487 -4.336099386 -6.56855343
## Abiotrophia_defectiva -0.307487 2.020008275 0.60156612
## Abiotrophia_sp_HMSC24B09 -0.307487 1.521833768 0.60999206
## Dolosigranulum_pigrum 12.624563 -4.336099386 -6.56855343
## Granulicatella_adiacens -0.307487 4.709720054 5.15278360
## Granulicatella_elegans -0.307487 5.813583961 5.58407625
## Enterococcus_faecalis -0.307487 -4.336099386 2.69646451
## Lactobacillus_rhamnosus -0.307487 3.246639103 3.44870914
## Streptococcus_anginosus -0.307487 5.267700987 4.56988220
## Streptococcus_australis -0.307487 8.617755395 6.76868743
## Streptococcus_cristatus -0.307487 -4.336099386 2.74416301
## Streptococcus_gordonii -0.307487 8.171709853 8.47506200
## Streptococcus_infantis -0.307487 7.821869610 7.66561681
## Streptococcus_milleri -0.307487 3.519832814 3.77212397
## Streptococcus_mitis -0.307487 7.237130649 8.22511031
## Streptococcus_oralis -0.307487 7.056712830 7.68639137
## Streptococcus_parasanguinis -0.307487 8.864722059 8.41213432
## Streptococcus_peroris -0.307487 3.486745904 2.55328355
## Streptococcus_pneumoniae -0.307487 4.779050799 5.68387308
## Streptococcus_pseudopneumoniae -0.307487 4.027009790 5.32605662
## Streptococcus_salivarius -0.307487 6.796911752 6.19361453
## Streptococcus_sanguinis -0.307487 7.087098289 7.06415626
## Streptococcus_sp_A12 -0.307487 2.837092356 2.65322132
## Streptococcus_sp_F0442 -0.307487 7.371298514 6.55230081
## Streptococcus_sp_HMSC034E03 -0.307487 -4.336099386 1.61874584
## Streptococcus_sp_HMSC067H01 -0.307487 -4.336099386 1.41761143
## Streptococcus_sp_HMSC071D03 -0.307487 -4.336099386 1.37771022
## Streptococcus_sp_HPH0090 -0.307487 3.964925868 3.11864205
## Streptococcus_sp_M334 -0.307487 3.813502350 5.04660366
## Streptococcus_vestibularis -0.307487 2.478443511 2.50676873
## Eubacterium_brachy -0.307487 6.443023557 5.36999919
## Eubacterium_infirmum -0.307487 0.805564170 1.08113920
## Eubacterium_nodatum -0.307487 4.499402071 3.35159457
## Eubacterium_sulci -0.307487 3.134694388 3.48984166
## Mogibacterium_diversum -0.307487 4.913269373 4.74763914
## Mogibacterium_pumilum -0.307487 1.929201827 1.50827260
## Mogibacterium_timidum -0.307487 2.238976455 1.21591981
## Lachnoanaerobaculum_saburreum -0.307487 4.375179229 4.65935308
## Oribacterium_parvum -0.307487 -4.336099386 -1.94358061
## Oribacterium_sinus -0.307487 2.816952249 1.65668190
## Oribacterium_sp_oral_taxon_078 -0.307487 2.489360650 2.32817149
## Stomatobaculum_longum -0.307487 -4.336099386 0.63112492
## Peptostreptococcus_stomatis -0.307487 2.680510298 2.76789082
## Bulleidia_extructa -0.307487 4.881911492 4.33978503
## Solobacterium_moorei -0.307487 4.004833840 4.38783401
## Limnochorda_pilosa -0.307487 3.486345343 3.07862151
## Veillonella_atypica -0.307487 -4.336099386 1.18592812
## Veillonella_dispar -0.307487 1.501631061 3.77134865
## Veillonella_infantium -0.307487 -4.336099386 2.67889003
## Veillonella_parvula -0.307487 4.941338729 6.49769664
## Veillonella_sp_T11011_6 -0.307487 -4.336099386 1.95143585
## Anaerococcus_nagyae -0.307487 -4.336099386 -6.56855343
## Finegoldia_magna -0.307487 -4.336099386 -6.56855343
## Parvimonas_micra -0.307487 5.738227386 5.71295131
## Parvimonas_sp_oral_taxon_110 -0.307487 1.507445031 1.90280523
## Parvimonas_sp_oral_taxon_393 -0.307487 1.350875970 2.37482211
## Fusobacterium_nucleatum -0.307487 -4.336099386 1.08161527
## Leptotrichia_wadei -0.307487 -4.336099386 -0.90212674
## Gemmata_obscuriglobus -0.307487 -4.336099386 1.69374752
## Paludisphaera_borealis -0.307487 2.274596659 2.26811116
## Achromobacter_xylosoxidans -0.307487 4.811088171 3.39959764
## Cupriavidus_sp 8.688422 6.431395640 5.82503145
## Sutterella_parvirubra -0.307487 -4.336099386 0.26770585
## Anaerobiospirillum_thomasii -0.307487 -4.336099386 2.00860535
## Cardiobacterium_hominis -0.307487 -4.336099386 -0.20552532
## Cardiobacterium_valvarum -0.307487 -4.336099386 -0.66592009
## Alkalilimnicola_ehrlichii -0.307487 2.306387415 -6.56855343
## Escherichia_coli -0.307487 -4.336099386 -6.56855343
## Thiohalorhabdus_denitrificans -0.307487 2.316763643 0.08559909
## Pseudomonas_aeruginosa -0.307487 8.240035690 4.22389477
## Acholeplasma_oculi -0.307487 -0.087604144 -0.63630824
## Candida_albicans -0.307487 -4.336099386 5.27589634
## Candida_dubliniensis -0.307487 -4.336099386 0.15767998
## Candida_parapsilosis -0.307487 -4.336099386 1.49545392
## Malassezia_restricta -0.307487 -4.336099386 -6.56855343
## Nakamurella_silvestris -0.307487 -4.336099386 -2.59826151
## Alloprevotella_tannerae -0.307487 -4.336099386 -6.56855343
## Prevotella_jejuni -0.307487 -4.336099386 -6.56855343
## Prevotella_pallens -0.307487 -4.336099386 -6.56855343
## Prevotella_salivae -0.307487 -4.336099386 -6.56855343
## Prevotella_sp_oral_taxon_306 -0.307487 -4.336099386 -6.56855343
## Prevotella_veroralis -0.307487 -4.336099386 -6.56855343
## Tannerella_sp_oral_taxon_808 -0.307487 -4.336099386 -6.56855343
## Tannerella_sp_oral_taxon_HOT_286 -0.307487 -4.336099386 -6.56855343
## Capnocytophaga_gingivalis -0.307487 -4.336099386 -6.56855343
## Bacillus_ginsengihumi -0.307487 -4.336099386 -6.56855343
## Listeria_floridensis -0.307487 -4.336099386 -6.56855343
## Agitococcus_lubricus -0.307487 -4.336099386 -6.56855343
## Lactobacillus_fermentum -0.307487 -4.336099386 -6.56855343
## Lactobacillus_gasseri -0.307487 -4.336099386 -6.56855343
## Sharpea_azabuensis -0.307487 -4.336099386 -6.56855343
## Streptococcus_mutans -0.307487 -4.336099386 -6.56855343
## Oribacterium_asaccharolyticum -0.307487 -4.336099386 -6.56855343
## Megasphaera_micronuciformis -0.307487 -4.336099386 -6.56855343
## Neisseria_flavescens -0.307487 -4.336099386 -6.56855343
## Neisseria_subflava -0.307487 -4.336099386 -6.56855343
## Stenotrophomonas_maltophilia -0.307487 -4.336099386 -6.56855343
## Stenotrophomonas_pavanii -0.307487 -4.336099386 -6.56855343
## Stenotrophomonas_rhizophila -0.307487 -4.336099386 -6.56855343
## Bacillus_intestinalis -0.307487 -4.336099386 -6.56855343
## Listeria_innocua -0.307487 -4.336099386 -6.56855343
## Listeria_monocytogenes -0.307487 -4.336099386 -6.56855343
## Staphylococcus_haemolyticus -0.307487 -4.336099386 -6.56855343
## Streptococcus_sobrinus -0.307487 -4.336099386 -6.56855343
## Eggerthia_catenaformis -0.307487 -4.336099386 -6.56855343
## Leptotrichia_sp_oral_taxon_498 -0.307487 -4.336099386 -6.56855343
## Rickettsia_felis -0.307487 -4.336099386 -6.56855343
## Haemophilus_parainfluenzae -0.307487 -4.336099386 -6.56855343
## Candida_orthopsilosis -0.307487 -4.336099386 -6.56855343
## Nannocystis_exedens -0.307487 -4.336099386 -6.56855343
## Campylobacter_concisus -0.307487 -4.336099386 -6.56855343
## Franconibacter_helveticus -0.307487 -4.336099386 -6.56855343
## Klebsiella_pneumoniae -0.307487 -4.336099386 -6.56855343
## Salmonella_enterica -0.307487 -4.336099386 -6.56855343
## Superficieibacter_electus -0.307487 -4.336099386 -6.56855343
## Pseudomonas_fluorescens -0.307487 -4.336099386 -6.56855343
## Saccharomyces_cerevisiae -0.307487 -4.336099386 -6.56855343
## S._cerevisiae x S._kudriavzevii -0.307487 -4.336099386 -6.56855343
## Saccharomyces_kudriavzevii -0.307487 -4.336099386 -6.56855343
## Cryptococcus_gattii_VGI -0.307487 -4.336099386 -6.56855343
## Cryptococcus_gattii_VGII -0.307487 -4.336099386 -6.56855343
## Cryptococcus_gattii_VGIII -0.307487 -4.336099386 -6.56855343
## Cryptococcus_neoformans -0.307487 -4.336099386 -6.56855343
## Listeria_marthii -0.307487 -4.336099386 -6.56855343
## Erwinia_persicina -0.307487 -4.336099386 -6.56855343
## Pseudomonas_formosensis -0.307487 -4.336099386 -6.56855343
## Pseudomonas_putida -0.307487 -4.336099386 -6.56855343
## CFB_e_lyPMA CFB_e_host_zero CFB_e_control
## Actinobaculum_sp_oral_taxon_183 -1.953889 4.241297493 -0.4580308
## Actinomyces_georgiae -1.953889 0.780762770 -0.4580308
## Actinomyces_graevenitzii 4.887726 6.166299471 -0.4580308
## Actinomyces_hongkongensis -1.953889 -0.128470770 -0.4580308
## Actinomyces_johnsonii -1.953889 4.950580890 -0.4580308
## Actinomyces_massiliensis -1.953889 2.936798062 -0.4580308
## Actinomyces_meyeri -1.953889 1.583285060 -0.4580308
## Actinomyces_naeslundii -1.953889 4.745448104 -0.4580308
## Actinomyces_odontolyticus 7.786550 8.089704707 5.9101564
## Actinomyces_oris 7.289305 7.056018686 -0.4580308
## Actinomyces_sp_HMSC035G02 4.388232 5.506092768 -0.4580308
## Actinomyces_sp_HPA0247 4.513809 5.566988367 -0.4580308
## Actinomyces_sp_ICM47 5.084017 6.191295292 -0.4580308
## Actinomyces_sp_S6_Spd3 -1.953889 4.038118131 -0.4580308
## Actinomyces_sp_oral_taxon_170 -1.953889 1.890456024 -0.4580308
## Actinomyces_sp_oral_taxon_180 -1.953889 3.551650329 -0.4580308
## Actinomyces_sp_oral_taxon_181 -1.953889 4.982465850 -0.4580308
## Actinomyces_sp_oral_taxon_414 -1.953889 1.444005479 -0.4580308
## Actinomyces_sp_oral_taxon_448 -1.953889 0.634606489 -0.4580308
## Actinomyces_sp_oral_taxon_897 -1.953889 2.541546948 -0.4580308
## Actinomyces_viscosus 6.264089 6.274553729 -0.4580308
## Aeriscardovia_aeriphila 2.322777 2.025317313 -0.4580308
## Alloscardovia_omnicolens -1.953889 3.446140036 -0.4580308
## Bifidobacterium_dentium -1.953889 0.117201895 -0.4580308
## Bifidobacterium_longum -1.953889 5.641576057 -0.4580308
## Scardovia_wiggsiae -1.953889 2.439395459 -0.4580308
## Corynebacterium_accolens -1.953889 -6.695143200 -0.4580308
## Corynebacterium_atypicum -1.953889 -1.085671404 -0.4580308
## Corynebacterium_durum -1.953889 4.382373281 -0.4580308
## Corynebacterium_matruchotii -1.953889 1.740188965 -0.4580308
## Corynebacterium_pseudodiphtheriticum -1.953889 -6.695143200 -0.4580308
## Corynebacterium_pseudogenitalium -1.953889 -6.695143200 -0.4580308
## Corynebacterium_tuberculostearicum -1.953889 -6.695143200 -0.4580308
## Rothia_aeria -1.953889 1.927850411 -0.4580308
## Rothia_dentocariosa 8.184908 7.177879376 4.4907291
## Rothia_mucilaginosa 9.072610 8.737474983 7.4914137
## Cutibacterium_acnes -1.953889 0.098322933 -0.4580308
## Cutibacterium_granulosum -1.953889 -6.695143200 -0.4580308
## Propionibacterium_humerusii -1.953889 -6.695143200 -0.4580308
## Propionibacterium_namnetense -1.953889 -6.695143200 -0.4580308
## Propionibacterium_acidifaciens -1.953889 1.525797969 -0.4580308
## Pseudopropionibacterium_propionicum -1.953889 3.666148875 -0.4580308
## Atopobium_deltae -1.953889 -0.828675143 -0.4580308
## Atopobium_parvulum 4.054924 5.163745038 -0.4580308
## Atopobium_rimae -1.953889 4.271502161 -0.4580308
## Olsenella_profusa -1.953889 2.759162439 -0.4580308
## Olsenella_scatoligenes -1.953889 2.099227080 -0.4580308
## Olsenella_uli -1.953889 2.735617018 -0.4580308
## Collinsella_aerofaciens -1.953889 1.972536825 -0.4580308
## Collinsella_intestinalis -1.953889 1.280765161 -0.4580308
## Collinsella_stercoris -1.953889 1.537828591 -0.4580308
## Enorma_massiliensis -1.953889 0.883002273 -0.4580308
## [Collinsella]_massiliensis -1.953889 2.339533403 -0.4580308
## Asaccharobacter_celatus -1.953889 0.554071857 -0.4580308
## Denitrobacterium_detoxificans -1.953889 0.486448745 -0.4580308
## Enterorhabdus_caecimuris -1.953889 0.303366443 -0.4580308
## Slackia_exigua -1.953889 3.932238949 -0.4580308
## Slackia_isoflavoniconvertens -1.953889 2.115018069 -0.4580308
## Rubrobacter_radiotolerans -1.953889 -0.955350287 -0.4580308
## Thermoleophilum_album 3.492848 1.475890990 -0.4580308
## Porphyromonas_endodontalis 5.181002 6.083283753 -0.4580308
## Porphyromonas_somerae 6.179698 4.671946917 -0.4580308
## Prevotella_histicola 6.666763 4.058666208 -0.4580308
## Prevotella_melaninogenica 7.203472 4.231406604 6.5098784
## Prevotella_oris -1.953889 3.225938661 -0.4580308
## Kouleothrix_aurantiaca -1.953889 0.399921178 -0.4580308
## Hydrogenibacillus_schlegelii -1.953889 0.200539498 -0.4580308
## Gemella_asaccharolytica -1.953889 -1.671262679 -0.4580308
## Gemella_bergeri -1.953889 3.701484507 -0.4580308
## Gemella_haemolysans 7.511558 5.976272230 -0.4580308
## Gemella_morbillorum 3.929433 4.546760634 -0.4580308
## Gemella_sanguinis 7.158618 6.663878393 5.4847686
## Brochothrix_campestris -1.953889 -6.695143200 -0.4580308
## Staphylococcus_argenteus -1.953889 -0.046158650 -0.4580308
## Staphylococcus_aureus -1.953889 1.664460071 -0.4580308
## Staphylococcus_epidermidis -1.953889 0.088182001 -0.4580308
## Staphylococcus_schweitzeri -1.953889 -6.695143200 -0.4580308
## Abiotrophia_defectiva -1.953889 0.506773118 -0.4580308
## Abiotrophia_sp_HMSC24B09 -1.953889 0.624721730 -0.4580308
## Dolosigranulum_pigrum -1.953889 -6.695143200 -0.4580308
## Granulicatella_adiacens 4.592896 4.162836047 -0.4580308
## Granulicatella_elegans 5.590972 4.870830020 -0.4580308
## Enterococcus_faecalis -1.953889 1.861847462 -0.4580308
## Lactobacillus_rhamnosus -1.953889 2.655654525 -0.4580308
## Streptococcus_anginosus 2.308791 4.791705195 -0.4580308
## Streptococcus_australis 6.586825 6.085892573 -0.4580308
## Streptococcus_cristatus -1.953889 1.784348125 -0.4580308
## Streptococcus_gordonii 8.301381 7.188930271 6.1513185
## Streptococcus_infantis 8.205828 7.141369266 -0.4580308
## Streptococcus_milleri 5.476225 2.364606814 -0.4580308
## Streptococcus_mitis 8.829246 7.158975384 6.9937915
## Streptococcus_oralis 7.965816 6.112884705 5.3560998
## Streptococcus_parasanguinis 8.856788 7.976655400 6.2609824
## Streptococcus_peroris -1.953889 3.396026516 -0.4580308
## Streptococcus_pneumoniae -1.953889 4.454888022 -0.4580308
## Streptococcus_pseudopneumoniae 6.444520 4.424487794 -0.4580308
## Streptococcus_salivarius 6.031255 6.628937416 -0.4580308
## Streptococcus_sanguinis 7.388006 6.231536139 -0.4580308
## Streptococcus_sp_A12 -1.953889 2.328867594 -0.4580308
## Streptococcus_sp_F0442 6.373111 6.411564261 -0.4580308
## Streptococcus_sp_HMSC034E03 -1.953889 -0.411009039 -0.4580308
## Streptococcus_sp_HMSC067H01 -1.953889 0.847070264 -0.4580308
## Streptococcus_sp_HMSC071D03 -1.953889 -0.001819531 -0.4580308
## Streptococcus_sp_HPH0090 -1.953889 3.696494828 -0.4580308
## Streptococcus_sp_M334 5.676572 3.955292930 -0.4580308
## Streptococcus_vestibularis -1.953889 2.459684462 -0.4580308
## Eubacterium_brachy 6.202334 5.300572546 -0.4580308
## Eubacterium_infirmum -1.953889 1.804903833 -0.4580308
## Eubacterium_nodatum -1.953889 4.931708986 -0.4580308
## Eubacterium_sulci -1.953889 3.976506237 -0.4580308
## Mogibacterium_diversum -1.953889 4.528912822 -0.4580308
## Mogibacterium_pumilum -1.953889 1.851997068 -0.4580308
## Mogibacterium_timidum -1.953889 1.706190106 -0.4580308
## Lachnoanaerobaculum_saburreum 4.217811 3.768474294 -0.4580308
## Oribacterium_parvum -1.953889 -0.225892883 -0.4580308
## Oribacterium_sinus -1.953889 2.077312173 -0.4580308
## Oribacterium_sp_oral_taxon_078 -1.953889 1.140436047 -0.4580308
## Stomatobaculum_longum -1.953889 -6.695143200 -0.4580308
## Peptostreptococcus_stomatis -1.953889 2.563701581 -0.4580308
## Bulleidia_extructa 4.679429 4.471948345 -0.4580308
## Solobacterium_moorei 3.798683 3.737147410 -0.4580308
## Limnochorda_pilosa 3.282553 2.376624522 -0.4580308
## Veillonella_atypica -1.953889 -1.753500777 -0.4580308
## Veillonella_dispar 4.640524 2.557010675 -0.4580308
## Veillonella_infantium 3.108706 1.432556653 -0.4580308
## Veillonella_parvula 6.933902 4.771518407 -0.4580308
## Veillonella_sp_T11011_6 -1.953889 0.732000934 -0.4580308
## Anaerococcus_nagyae -1.953889 -6.695143200 -0.4580308
## Finegoldia_magna -1.953889 -6.695143200 -0.4580308
## Parvimonas_micra 5.835565 5.669359527 -0.4580308
## Parvimonas_sp_oral_taxon_110 -1.953889 1.305541585 -0.4580308
## Parvimonas_sp_oral_taxon_393 -1.953889 2.420336891 -0.4580308
## Fusobacterium_nucleatum -1.953889 1.606874610 -0.4580308
## Leptotrichia_wadei -1.953889 -6.695143200 -0.4580308
## Gemmata_obscuriglobus -1.953889 0.874268593 -0.4580308
## Paludisphaera_borealis 3.934989 1.530895230 -0.4580308
## Achromobacter_xylosoxidans 9.196817 3.795074905 8.8527882
## Cupriavidus_sp 5.144486 5.361413841 -0.4580308
## Sutterella_parvirubra 4.159793 0.165520472 -0.4580308
## Anaerobiospirillum_thomasii -1.953889 1.189056734 -0.4580308
## Cardiobacterium_hominis -1.953889 0.679485816 -0.4580308
## Cardiobacterium_valvarum -1.953889 0.528881609 -0.4580308
## Alkalilimnicola_ehrlichii 6.064407 0.352374022 6.2789362
## Escherichia_coli -1.953889 -6.695143200 -0.4580308
## Thiohalorhabdus_denitrificans 6.176464 0.192409372 5.5029746
## Pseudomonas_aeruginosa 11.768018 5.570028198 11.7420087
## Acholeplasma_oculi -1.953889 -0.773564780 -0.4580308
## Candida_albicans -1.953889 -6.695143200 -0.4580308
## Candida_dubliniensis -1.953889 -6.695143200 -0.4580308
## Candida_parapsilosis -1.953889 -6.695143200 -0.4580308
## Malassezia_restricta -1.953889 -6.695143200 -0.4580308
## Nakamurella_silvestris -1.953889 -1.352808948 -0.4580308
## Alloprevotella_tannerae -1.953889 -6.695143200 -0.4580308
## Prevotella_jejuni -1.953889 3.661646790 -0.4580308
## Prevotella_pallens -1.953889 3.323056010 -0.4580308
## Prevotella_salivae -1.953889 2.088559499 -0.4580308
## Prevotella_sp_oral_taxon_306 -1.953889 4.022247922 -0.4580308
## Prevotella_veroralis -1.953889 0.976683598 -0.4580308
## Tannerella_sp_oral_taxon_808 -1.953889 -6.695143200 -0.4580308
## Tannerella_sp_oral_taxon_HOT_286 -1.953889 -0.416621775 -0.4580308
## Capnocytophaga_gingivalis -1.953889 2.116509049 -0.4580308
## Bacillus_ginsengihumi -1.953889 -6.695143200 -0.4580308
## Listeria_floridensis -1.953889 -6.695143200 -0.4580308
## Agitococcus_lubricus -1.953889 -6.695143200 -0.4580308
## Lactobacillus_fermentum -1.953889 -6.695143200 -0.4580308
## Lactobacillus_gasseri -1.953889 -6.695143200 -0.4580308
## Sharpea_azabuensis -1.953889 -2.229235081 -0.4580308
## Streptococcus_mutans -1.953889 -6.695143200 -0.4580308
## Oribacterium_asaccharolyticum -1.953889 -1.104156219 -0.4580308
## Megasphaera_micronuciformis -1.953889 -2.110175721 -0.4580308
## Neisseria_flavescens -1.953889 -6.695143200 -0.4580308
## Neisseria_subflava -1.953889 -6.695143200 -0.4580308
## Stenotrophomonas_maltophilia -1.953889 -6.695143200 -0.4580308
## Stenotrophomonas_pavanii -1.953889 -6.695143200 -0.4580308
## Stenotrophomonas_rhizophila -1.953889 -6.695143200 -0.4580308
## Bacillus_intestinalis -1.953889 -6.695143200 -0.4580308
## Listeria_innocua -1.953889 -6.695143200 -0.4580308
## Listeria_monocytogenes -1.953889 -6.695143200 -0.4580308
## Staphylococcus_haemolyticus -1.953889 -6.695143200 -0.4580308
## Streptococcus_sobrinus -1.953889 -6.695143200 -0.4580308
## Eggerthia_catenaformis -1.953889 -6.695143200 -0.4580308
## Leptotrichia_sp_oral_taxon_498 -1.953889 -6.695143200 -0.4580308
## Rickettsia_felis -1.953889 -6.695143200 -0.4580308
## Haemophilus_parainfluenzae -1.953889 -6.695143200 -0.4580308
## Candida_orthopsilosis -1.953889 -6.695143200 -0.4580308
## Nannocystis_exedens -1.953889 -6.695143200 -0.4580308
## Campylobacter_concisus -1.953889 -6.695143200 -0.4580308
## Franconibacter_helveticus -1.953889 -6.695143200 -0.4580308
## Klebsiella_pneumoniae -1.953889 -6.695143200 -0.4580308
## Salmonella_enterica -1.953889 -6.695143200 -0.4580308
## Superficieibacter_electus -1.953889 -6.695143200 -0.4580308
## Pseudomonas_fluorescens -1.953889 -6.695143200 -0.4580308
## Saccharomyces_cerevisiae -1.953889 -6.695143200 -0.4580308
## S._cerevisiae x S._kudriavzevii -1.953889 -6.695143200 -0.4580308
## Saccharomyces_kudriavzevii -1.953889 -6.695143200 -0.4580308
## Cryptococcus_gattii_VGI -1.953889 -6.695143200 -0.4580308
## Cryptococcus_gattii_VGII -1.953889 -6.695143200 -0.4580308
## Cryptococcus_gattii_VGIII -1.953889 -6.695143200 -0.4580308
## Cryptococcus_neoformans -1.953889 -6.695143200 -0.4580308
## Listeria_marthii -1.953889 -6.695143200 -0.4580308
## Erwinia_persicina -1.953889 -6.695143200 -0.4580308
## Pseudomonas_formosensis -1.953889 -6.695143200 -0.4580308
## Pseudomonas_putida -1.953889 -6.695143200 -0.4580308
## CFB_e_benzonase CFB_d_qiaamp CFB_d_molysis
## Actinobaculum_sp_oral_taxon_183 4.7375103 -3.0868595 -5.738147564
## Actinomyces_georgiae -3.3680991 -3.0868595 3.051969329
## Actinomyces_graevenitzii 6.7201237 4.8945321 5.836860283
## Actinomyces_hongkongensis -3.3680991 -3.0868595 2.520015798
## Actinomyces_johnsonii 6.1820650 6.5542888 6.610209926
## Actinomyces_massiliensis 3.1525220 -3.0868595 3.323460754
## Actinomyces_meyeri -3.3680991 -3.0868595 1.912972612
## Actinomyces_naeslundii 4.8619452 5.5250983 5.965199894
## Actinomyces_odontolyticus 8.3750726 6.8718736 6.708759227
## Actinomyces_oris 7.4384926 8.9977854 8.966511896
## Actinomyces_sp_HMSC035G02 5.2879860 6.5613487 6.311680544
## Actinomyces_sp_HPA0247 5.0508195 5.1603606 5.057051101
## Actinomyces_sp_ICM47 6.1120393 6.6425723 6.336437314
## Actinomyces_sp_S6_Spd3 2.7232107 4.4186328 4.431274794
## Actinomyces_sp_oral_taxon_170 -3.3680991 5.2490516 5.613610998
## Actinomyces_sp_oral_taxon_180 4.2696173 5.3678198 5.646228364
## Actinomyces_sp_oral_taxon_181 4.2782546 5.8355321 5.731557199
## Actinomyces_sp_oral_taxon_414 -3.3680991 -3.0868595 1.876657801
## Actinomyces_sp_oral_taxon_448 -3.3680991 -3.0868595 -5.738147564
## Actinomyces_sp_oral_taxon_897 -3.3680991 -3.0868595 -5.738147564
## Actinomyces_viscosus 6.3707496 4.3033220 4.564753489
## Aeriscardovia_aeriphila 3.1361890 2.8844024 1.953052534
## Alloscardovia_omnicolens 2.7867589 3.5864385 3.930313615
## Bifidobacterium_dentium -3.3680991 -3.0868595 1.958519518
## Bifidobacterium_longum 5.9643704 -3.0868595 0.468428363
## Scardovia_wiggsiae -0.2770567 4.7083755 4.937691064
## Corynebacterium_accolens -3.3680991 -3.0868595 -5.738147564
## Corynebacterium_atypicum -3.3680991 -3.0868595 -5.738147564
## Corynebacterium_durum 3.4106858 4.4202816 4.658296914
## Corynebacterium_matruchotii -3.3680991 -3.0868595 3.011267843
## Corynebacterium_pseudodiphtheriticum -3.3680991 -3.0868595 -5.738147564
## Corynebacterium_pseudogenitalium -3.3680991 -3.0868595 -5.738147564
## Corynebacterium_tuberculostearicum -3.3680991 -3.0868595 -5.738147564
## Rothia_aeria -3.3680991 3.7493998 4.984150187
## Rothia_dentocariosa 8.0093387 8.2129594 7.916381705
## Rothia_mucilaginosa 9.4451297 9.5716223 9.451646766
## Cutibacterium_acnes -3.3680991 -3.0868595 1.953052534
## Cutibacterium_granulosum -3.3680991 -3.0868595 -5.738147564
## Propionibacterium_humerusii -3.3680991 -3.0868595 -5.738147564
## Propionibacterium_namnetense -3.3680991 -3.0868595 -5.738147564
## Propionibacterium_acidifaciens -3.3680991 -3.0868595 3.500683078
## Pseudopropionibacterium_propionicum 2.9290102 5.2736799 5.495685498
## Atopobium_deltae -3.3680991 -3.0868595 -0.139725605
## Atopobium_parvulum 5.3495829 5.4289327 5.294174290
## Atopobium_rimae 4.2323032 5.7370829 5.846130652
## Olsenella_profusa 1.7558648 4.0763129 4.850681786
## Olsenella_scatoligenes 1.9837590 3.9536769 4.486082009
## Olsenella_uli -3.3680991 5.3629110 5.948579936
## Collinsella_aerofaciens 2.3844735 3.4233989 3.329245799
## Collinsella_intestinalis -3.3680991 0.9204737 2.382738457
## Collinsella_stercoris -3.3680991 2.1495825 3.019793313
## Enorma_massiliensis -3.3680991 1.7089311 2.501181864
## [Collinsella]_massiliensis 2.8643489 3.4613596 3.679044363
## Asaccharobacter_celatus -3.3680991 -3.0868595 1.162583100
## Denitrobacterium_detoxificans -3.3680991 -3.0868595 0.605732870
## Enterorhabdus_caecimuris -3.3680991 -3.0868595 1.246568756
## Slackia_exigua 2.6133151 4.1630661 4.498843537
## Slackia_isoflavoniconvertens 1.6425361 2.4225289 3.185976328
## Rubrobacter_radiotolerans -3.3680991 -3.0868595 -0.349075834
## Thermoleophilum_album 1.7256511 -3.0868595 1.178567456
## Porphyromonas_endodontalis 3.7034742 -3.0868595 -5.738147564
## Porphyromonas_somerae 5.6901384 6.3478237 3.643116320
## Prevotella_histicola 5.4335208 -3.0868595 -5.738147564
## Prevotella_melaninogenica 7.1231751 -3.0868595 0.877917621
## Prevotella_oris 1.3047297 -3.0868595 -5.738147564
## Kouleothrix_aurantiaca -3.3680991 -3.0868595 -0.008047781
## Hydrogenibacillus_schlegelii -3.3680991 -3.0868595 -0.470289405
## Gemella_asaccharolytica -3.3680991 -3.0868595 -5.738147564
## Gemella_bergeri 3.3350890 2.9462267 3.802790681
## Gemella_haemolysans 6.8509653 7.8304629 7.477957491
## Gemella_morbillorum 4.9410854 5.6931594 4.887244680
## Gemella_sanguinis 7.4034548 8.8211305 8.305009193
## Brochothrix_campestris -3.3680991 -3.0868595 0.509895311
## Staphylococcus_argenteus -3.3680991 11.0924855 8.891029906
## Staphylococcus_aureus -3.3680991 14.2217550 12.039438414
## Staphylococcus_epidermidis -3.3680991 -3.0868595 -5.738147564
## Staphylococcus_schweitzeri -3.3680991 8.3066404 6.007705433
## Abiotrophia_defectiva -3.3680991 3.9787539 3.538822890
## Abiotrophia_sp_HMSC24B09 -3.3680991 3.4993122 3.444924381
## Dolosigranulum_pigrum -3.3680991 -3.0868595 -5.738147564
## Granulicatella_adiacens 4.8595436 3.6723958 3.779603976
## Granulicatella_elegans 5.5613361 5.3656885 5.354554422
## Enterococcus_faecalis -3.3680991 -3.0868595 -5.738147564
## Lactobacillus_rhamnosus -3.3680991 -3.0868595 2.924011398
## Streptococcus_anginosus 4.8341093 5.1642827 6.012281847
## Streptococcus_australis 6.1014467 8.8008519 8.351949189
## Streptococcus_cristatus -3.3680991 4.7096098 4.680854602
## Streptococcus_gordonii 7.9800224 3.6700729 4.592273003
## Streptococcus_infantis 8.2655029 7.8323659 7.967454374
## Streptococcus_milleri 4.0825617 -3.0868595 -5.738147564
## Streptococcus_mitis 8.1900960 5.7493691 7.712262656
## Streptococcus_oralis 7.2485588 6.3602117 7.759284942
## Streptococcus_parasanguinis 8.5514241 8.4719281 8.390343593
## Streptococcus_peroris 4.5991810 3.9813125 4.420292236
## Streptococcus_pneumoniae 5.6072781 -3.0868595 5.723031873
## Streptococcus_pseudopneumoniae 5.5003141 -3.0868595 5.381083249
## Streptococcus_salivarius 5.8826151 7.5923686 7.242772058
## Streptococcus_sanguinis 6.3712800 -3.0868595 3.441939765
## Streptococcus_sp_A12 -3.3680991 3.9589171 2.610390261
## Streptococcus_sp_F0442 6.7099718 4.9644815 5.192939510
## Streptococcus_sp_HMSC034E03 -3.3680991 -3.0868595 3.388811199
## Streptococcus_sp_HMSC067H01 -3.3680991 -3.0868595 2.759658914
## Streptococcus_sp_HMSC071D03 -3.3680991 -3.0868595 3.247047254
## Streptococcus_sp_HPH0090 4.3528061 -3.0868595 4.006871668
## Streptococcus_sp_M334 4.3677712 4.0512136 3.369495410
## Streptococcus_vestibularis -3.3680991 3.3298728 2.288022631
## Eubacterium_brachy 5.2557937 -3.0868595 1.676425317
## Eubacterium_infirmum -3.3680991 -3.0868595 3.108780936
## Eubacterium_nodatum 4.2934279 -3.0868595 -5.738147564
## Eubacterium_sulci 2.6886849 -3.0868595 -5.738147564
## Mogibacterium_diversum 4.2565198 1.7883378 4.229628478
## Mogibacterium_pumilum -3.3680991 -3.0868595 -0.027720547
## Mogibacterium_timidum -3.3680991 -3.0868595 2.011605842
## Lachnoanaerobaculum_saburreum 4.8172511 -3.0868595 3.237229680
## Oribacterium_parvum -3.3680991 -3.0868595 -5.738147564
## Oribacterium_sinus -3.3680991 -3.0868595 -5.738147564
## Oribacterium_sp_oral_taxon_078 -3.3680991 -3.0868595 0.125483612
## Stomatobaculum_longum 3.1685925 -3.0868595 1.038359428
## Peptostreptococcus_stomatis 2.5011978 4.9881009 4.429587095
## Bulleidia_extructa 4.9557520 1.6580727 3.415728271
## Solobacterium_moorei 5.4749386 4.7161672 4.797860985
## Limnochorda_pilosa 3.2665342 3.2587769 3.484220188
## Veillonella_atypica 4.3492521 -3.0868595 1.104535718
## Veillonella_dispar 4.3074469 -3.0868595 1.800347435
## Veillonella_infantium -3.3680991 -3.0868595 1.957155571
## Veillonella_parvula 6.1745620 -3.0868595 3.053946366
## Veillonella_sp_T11011_6 -3.3680991 -3.0868595 -5.738147564
## Anaerococcus_nagyae -3.3680991 -3.0868595 -5.738147564
## Finegoldia_magna -3.3680991 -3.0868595 -5.738147564
## Parvimonas_micra 5.9662272 2.3022123 4.273386893
## Parvimonas_sp_oral_taxon_110 -3.3680991 -3.0868595 -5.738147564
## Parvimonas_sp_oral_taxon_393 2.0300636 -3.0868595 -0.051172208
## Fusobacterium_nucleatum -3.3680991 -3.0868595 2.513777150
## Leptotrichia_wadei -3.3680991 -3.0868595 -5.738147564
## Gemmata_obscuriglobus -3.3680991 -3.0868595 1.916295663
## Paludisphaera_borealis -3.3680991 -3.0868595 1.479295868
## Achromobacter_xylosoxidans 8.1629609 -3.0868595 -5.738147564
## Cupriavidus_sp 5.9862550 7.1489130 7.201232438
## Sutterella_parvirubra 2.4370358 -3.0868595 1.919607707
## Anaerobiospirillum_thomasii -3.3680991 -3.0868595 1.858244740
## Cardiobacterium_hominis -3.3680991 -3.0868595 -5.738147564
## Cardiobacterium_valvarum -3.3680991 -3.0868595 -5.738147564
## Alkalilimnicola_ehrlichii 3.6794181 2.4225289 -5.738147564
## Escherichia_coli -3.3680991 -3.0868595 -5.738147564
## Thiohalorhabdus_denitrificans 3.9215114 0.5507267 -2.182799502
## Pseudomonas_aeruginosa 9.5952193 7.9770564 2.591027878
## Acholeplasma_oculi -3.3680991 1.8331215 1.197222882
## Candida_albicans 3.0567699 -3.0868595 -5.738147564
## Candida_dubliniensis -3.3680991 -3.0868595 -5.738147564
## Candida_parapsilosis -3.3680991 -3.0868595 -5.738147564
## Malassezia_restricta -3.3680991 -3.0868595 -5.738147564
## Nakamurella_silvestris -3.3680991 -3.0868595 -5.738147564
## Alloprevotella_tannerae -3.3680991 -3.0868595 -5.738147564
## Prevotella_jejuni 1.4760879 -3.0868595 -5.738147564
## Prevotella_pallens 1.8080506 -3.0868595 -5.738147564
## Prevotella_salivae 4.0109090 -3.0868595 -5.738147564
## Prevotella_sp_oral_taxon_306 2.7952157 -3.0868595 -5.738147564
## Prevotella_veroralis -3.3680991 -3.0868595 -5.738147564
## Tannerella_sp_oral_taxon_808 -3.3680991 -3.0868595 -5.738147564
## Tannerella_sp_oral_taxon_HOT_286 -3.3680991 -3.0868595 -5.738147564
## Capnocytophaga_gingivalis -3.3680991 3.9475285 -5.738147564
## Bacillus_ginsengihumi -3.3680991 -3.0868595 -5.738147564
## Listeria_floridensis -3.3680991 -3.0868595 -5.738147564
## Agitococcus_lubricus -3.3680991 -3.0868595 -5.738147564
## Lactobacillus_fermentum -3.3680991 -3.0868595 0.932618757
## Lactobacillus_gasseri -3.3680991 -3.0868595 -1.767855650
## Sharpea_azabuensis -3.3680991 -3.0868595 -1.283800268
## Streptococcus_mutans -3.3680991 -3.0868595 3.164852098
## Oribacterium_asaccharolyticum -3.3680991 -3.0868595 -5.738147564
## Megasphaera_micronuciformis -3.3680991 -3.0868595 -5.738147564
## Neisseria_flavescens -3.3680991 4.4436205 1.120417471
## Neisseria_subflava -3.3680991 3.9855624 1.948014740
## Stenotrophomonas_maltophilia -3.3680991 8.4464371 6.047427551
## Stenotrophomonas_pavanii -3.3680991 4.5014642 2.209177463
## Stenotrophomonas_rhizophila -3.3680991 6.0521997 3.565409890
## Bacillus_intestinalis -3.3680991 -3.0868595 -5.738147564
## Listeria_innocua -3.3680991 -3.0868595 -5.738147564
## Listeria_monocytogenes -3.3680991 -3.0868595 -5.738147564
## Staphylococcus_haemolyticus -3.3680991 -3.0868595 -5.738147564
## Streptococcus_sobrinus -3.3680991 -3.0868595 -5.738147564
## Eggerthia_catenaformis -3.3680991 -3.0868595 -5.738147564
## Leptotrichia_sp_oral_taxon_498 -3.3680991 -3.0868595 -5.738147564
## Rickettsia_felis -3.3680991 -3.0868595 -5.738147564
## Haemophilus_parainfluenzae -3.3680991 -3.0868595 -5.738147564
## Candida_orthopsilosis -3.3680991 -3.0868595 -5.738147564
## Nannocystis_exedens -3.3680991 -3.0868595 -5.738147564
## Campylobacter_concisus -3.3680991 -3.0868595 -5.738147564
## Franconibacter_helveticus -3.3680991 -3.0868595 -5.738147564
## Klebsiella_pneumoniae -3.3680991 -3.0868595 -5.738147564
## Salmonella_enterica -3.3680991 -3.0868595 -5.738147564
## Superficieibacter_electus -3.3680991 -3.0868595 -5.738147564
## Pseudomonas_fluorescens -3.3680991 -3.0868595 -5.738147564
## Saccharomyces_cerevisiae -3.3680991 -3.0868595 -5.738147564
## S._cerevisiae x S._kudriavzevii -3.3680991 -3.0868595 -5.738147564
## Saccharomyces_kudriavzevii -3.3680991 -3.0868595 -5.738147564
## Cryptococcus_gattii_VGI -3.3680991 -3.0868595 -5.738147564
## Cryptococcus_gattii_VGII -3.3680991 -3.0868595 -5.738147564
## Cryptococcus_gattii_VGIII -3.3680991 -3.0868595 -5.738147564
## Cryptococcus_neoformans -3.3680991 -3.0868595 -5.738147564
## Listeria_marthii -3.3680991 -3.0868595 -5.738147564
## Erwinia_persicina -3.3680991 -3.0868595 -5.738147564
## Pseudomonas_formosensis -3.3680991 -3.0868595 -5.738147564
## Pseudomonas_putida -3.3680991 -3.0868595 -5.738147564
## CFB_d_lyPMA CFB_d_host_zero CFB_d_control
## Actinobaculum_sp_oral_taxon_183 -0.4841637 -3.1070209 -0.3086676
## Actinomyces_georgiae -0.4841637 -3.1070209 -0.3086676
## Actinomyces_graevenitzii -0.4841637 5.5532332 -0.3086676
## Actinomyces_hongkongensis -0.4841637 -3.1070209 -0.3086676
## Actinomyces_johnsonii -0.4841637 7.5272227 -0.3086676
## Actinomyces_massiliensis -0.4841637 -3.1070209 -0.3086676
## Actinomyces_meyeri -0.4841637 1.2104673 -0.3086676
## Actinomyces_naeslundii -0.4841637 6.5786216 -0.3086676
## Actinomyces_odontolyticus -0.4841637 6.9076950 -0.3086676
## Actinomyces_oris -0.4841637 9.0411790 -0.3086676
## Actinomyces_sp_HMSC035G02 -0.4841637 6.6159635 -0.3086676
## Actinomyces_sp_HPA0247 -0.4841637 5.0370776 -0.3086676
## Actinomyces_sp_ICM47 -0.4841637 6.4045346 -0.3086676
## Actinomyces_sp_S6_Spd3 -0.4841637 4.1074836 -0.3086676
## Actinomyces_sp_oral_taxon_170 -0.4841637 5.2445899 -0.3086676
## Actinomyces_sp_oral_taxon_180 -0.4841637 5.5172314 -0.3086676
## Actinomyces_sp_oral_taxon_181 -0.4841637 5.7387564 -0.3086676
## Actinomyces_sp_oral_taxon_414 -0.4841637 -3.1070209 -0.3086676
## Actinomyces_sp_oral_taxon_448 -0.4841637 -3.1070209 -0.3086676
## Actinomyces_sp_oral_taxon_897 -0.4841637 -3.1070209 -0.3086676
## Actinomyces_viscosus -0.4841637 -3.1070209 -0.3086676
## Aeriscardovia_aeriphila -0.4841637 2.7219248 -0.3086676
## Alloscardovia_omnicolens -0.4841637 3.7324556 -0.3086676
## Bifidobacterium_dentium -0.4841637 -3.1070209 -0.3086676
## Bifidobacterium_longum -0.4841637 -3.1070209 -0.3086676
## Scardovia_wiggsiae -0.4841637 4.5652716 -0.3086676
## Corynebacterium_accolens -0.4841637 -3.1070209 -0.3086676
## Corynebacterium_atypicum -0.4841637 -3.1070209 -0.3086676
## Corynebacterium_durum -0.4841637 4.5740781 -0.3086676
## Corynebacterium_matruchotii -0.4841637 -3.1070209 -0.3086676
## Corynebacterium_pseudodiphtheriticum -0.4841637 -3.1070209 -0.3086676
## Corynebacterium_pseudogenitalium -0.4841637 -3.1070209 -0.3086676
## Corynebacterium_tuberculostearicum -0.4841637 -3.1070209 -0.3086676
## Rothia_aeria -0.4841637 4.8494559 -0.3086676
## Rothia_dentocariosa 4.9881070 8.1919190 -0.3086676
## Rothia_mucilaginosa 7.7729626 9.7493645 -0.3086676
## Cutibacterium_acnes -0.4841637 -3.1070209 -0.3086676
## Cutibacterium_granulosum -0.4841637 -3.1070209 -0.3086676
## Propionibacterium_humerusii -0.4841637 -3.1070209 -0.3086676
## Propionibacterium_namnetense -0.4841637 -3.1070209 -0.3086676
## Propionibacterium_acidifaciens -0.4841637 0.8442229 -0.3086676
## Pseudopropionibacterium_propionicum -0.4841637 5.4065658 -0.3086676
## Atopobium_deltae -0.4841637 -3.1070209 -0.3086676
## Atopobium_parvulum -0.4841637 5.5031161 -0.3086676
## Atopobium_rimae -0.4841637 5.6404901 -0.3086676
## Olsenella_profusa -0.4841637 4.6358151 -0.3086676
## Olsenella_scatoligenes -0.4841637 3.8987682 -0.3086676
## Olsenella_uli -0.4841637 5.5794087 -0.3086676
## Collinsella_aerofaciens -0.4841637 2.3525647 -0.3086676
## Collinsella_intestinalis -0.4841637 2.2159891 -0.3086676
## Collinsella_stercoris -0.4841637 2.4689282 -0.3086676
## Enorma_massiliensis -0.4841637 1.5843270 -0.3086676
## [Collinsella]_massiliensis -0.4841637 3.9077935 -0.3086676
## Asaccharobacter_celatus -0.4841637 -3.1070209 -0.3086676
## Denitrobacterium_detoxificans -0.4841637 -3.1070209 -0.3086676
## Enterorhabdus_caecimuris -0.4841637 -3.1070209 -0.3086676
## Slackia_exigua -0.4841637 5.6759155 -0.3086676
## Slackia_isoflavoniconvertens -0.4841637 3.1468080 -0.3086676
## Rubrobacter_radiotolerans -0.4841637 -3.1070209 -0.3086676
## Thermoleophilum_album -0.4841637 -3.1070209 -0.3086676
## Porphyromonas_endodontalis -0.4841637 4.1750528 -0.3086676
## Porphyromonas_somerae -0.4841637 6.9826558 -0.3086676
## Prevotella_histicola -0.4841637 -3.1070209 -0.3086676
## Prevotella_melaninogenica -0.4841637 -3.1070209 -0.3086676
## Prevotella_oris -0.4841637 -3.1070209 -0.3086676
## Kouleothrix_aurantiaca -0.4841637 -3.1070209 -0.3086676
## Hydrogenibacillus_schlegelii -0.4841637 -3.1070209 -0.3086676
## Gemella_asaccharolytica -0.4841637 -3.1070209 -0.3086676
## Gemella_bergeri -0.4841637 1.6551531 -0.3086676
## Gemella_haemolysans 6.8462415 7.3805242 -0.3086676
## Gemella_morbillorum -0.4841637 5.1179466 -0.3086676
## Gemella_sanguinis 7.1197343 9.0358191 5.9810479
## Brochothrix_campestris -0.4841637 -3.1070209 -0.3086676
## Staphylococcus_argenteus 8.7126861 10.4885062 6.6305863
## Staphylococcus_aureus 11.9216529 13.6843649 10.3126841
## Staphylococcus_epidermidis -0.4841637 -3.1070209 -0.3086676
## Staphylococcus_schweitzeri -0.4841637 7.8233502 -0.3086676
## Abiotrophia_defectiva -0.4841637 3.7916937 -0.3086676
## Abiotrophia_sp_HMSC24B09 -0.4841637 3.9326395 -0.3086676
## Dolosigranulum_pigrum -0.4841637 -3.1070209 -0.3086676
## Granulicatella_adiacens -0.4841637 3.2083371 -0.3086676
## Granulicatella_elegans -0.4841637 5.3877222 -0.3086676
## Enterococcus_faecalis -0.4841637 -3.1070209 -0.3086676
## Lactobacillus_rhamnosus -0.4841637 -3.1070209 -0.3086676
## Streptococcus_anginosus -0.4841637 6.8608021 -0.3086676
## Streptococcus_australis -0.4841637 8.4159044 -0.3086676
## Streptococcus_cristatus -0.4841637 4.3153528 -0.3086676
## Streptococcus_gordonii -0.4841637 4.7775557 -0.3086676
## Streptococcus_infantis 5.6854470 7.7263052 -0.3086676
## Streptococcus_milleri -0.4841637 -3.1070209 -0.3086676
## Streptococcus_mitis 6.3890001 6.5913472 -0.3086676
## Streptococcus_oralis -0.4841637 6.7154193 -0.3086676
## Streptococcus_parasanguinis 6.7749524 8.4100958 5.4375356
## Streptococcus_peroris -0.4841637 5.3193720 -0.3086676
## Streptococcus_pneumoniae -0.4841637 -3.1070209 -0.3086676
## Streptococcus_pseudopneumoniae -0.4841637 3.6487481 -0.3086676
## Streptococcus_salivarius -0.4841637 6.8173472 -0.3086676
## Streptococcus_sanguinis -0.4841637 -3.1070209 -0.3086676
## Streptococcus_sp_A12 -0.4841637 4.2266555 -0.3086676
## Streptococcus_sp_F0442 -0.4841637 5.5054825 -0.3086676
## Streptococcus_sp_HMSC034E03 -0.4841637 -3.1070209 -0.3086676
## Streptococcus_sp_HMSC067H01 -0.4841637 -3.1070209 -0.3086676
## Streptococcus_sp_HMSC071D03 -0.4841637 2.8172349 -0.3086676
## Streptococcus_sp_HPH0090 -0.4841637 -3.1070209 -0.3086676
## Streptococcus_sp_M334 -0.4841637 3.8447513 -0.3086676
## Streptococcus_vestibularis -0.4841637 -3.1070209 -0.3086676
## Eubacterium_brachy -0.4841637 -3.1070209 -0.3086676
## Eubacterium_infirmum -0.4841637 -3.1070209 -0.3086676
## Eubacterium_nodatum -0.4841637 -3.1070209 -0.3086676
## Eubacterium_sulci -0.4841637 -3.1070209 -0.3086676
## Mogibacterium_diversum -0.4841637 3.1214901 -0.3086676
## Mogibacterium_pumilum -0.4841637 -3.1070209 -0.3086676
## Mogibacterium_timidum -0.4841637 -3.1070209 -0.3086676
## Lachnoanaerobaculum_saburreum -0.4841637 -3.1070209 -0.3086676
## Oribacterium_parvum -0.4841637 -3.1070209 -0.3086676
## Oribacterium_sinus -0.4841637 -3.1070209 -0.3086676
## Oribacterium_sp_oral_taxon_078 -0.4841637 -3.1070209 -0.3086676
## Stomatobaculum_longum -0.4841637 -3.1070209 -0.3086676
## Peptostreptococcus_stomatis -0.4841637 4.8879487 -0.3086676
## Bulleidia_extructa -0.4841637 2.6859928 -0.3086676
## Solobacterium_moorei -0.4841637 4.1988392 -0.3086676
## Limnochorda_pilosa -0.4841637 2.2061851 -0.3086676
## Veillonella_atypica -0.4841637 -3.1070209 -0.3086676
## Veillonella_dispar -0.4841637 -3.1070209 -0.3086676
## Veillonella_infantium -0.4841637 -3.1070209 -0.3086676
## Veillonella_parvula -0.4841637 -3.1070209 -0.3086676
## Veillonella_sp_T11011_6 -0.4841637 -3.1070209 -0.3086676
## Anaerococcus_nagyae -0.4841637 -3.1070209 -0.3086676
## Finegoldia_magna -0.4841637 -3.1070209 -0.3086676
## Parvimonas_micra -0.4841637 -3.1070209 -0.3086676
## Parvimonas_sp_oral_taxon_110 -0.4841637 -3.1070209 -0.3086676
## Parvimonas_sp_oral_taxon_393 -0.4841637 -3.1070209 -0.3086676
## Fusobacterium_nucleatum -0.4841637 1.4779466 -0.3086676
## Leptotrichia_wadei -0.4841637 -3.1070209 -0.3086676
## Gemmata_obscuriglobus -0.4841637 -3.1070209 -0.3086676
## Paludisphaera_borealis -0.4841637 -3.1070209 -0.3086676
## Achromobacter_xylosoxidans -0.4841637 -3.1070209 -0.3086676
## Cupriavidus_sp -0.4841637 6.9029865 -0.3086676
## Sutterella_parvirubra -0.4841637 -3.1070209 -0.3086676
## Anaerobiospirillum_thomasii -0.4841637 -3.1070209 -0.3086676
## Cardiobacterium_hominis -0.4841637 -3.1070209 -0.3086676
## Cardiobacterium_valvarum -0.4841637 -3.1070209 -0.3086676
## Alkalilimnicola_ehrlichii -0.4841637 -3.1070209 -0.3086676
## Escherichia_coli -0.4841637 -3.1070209 -0.3086676
## Thiohalorhabdus_denitrificans -0.4841637 -3.1070209 -0.3086676
## Pseudomonas_aeruginosa 9.1787798 7.5948069 8.6358826
## Acholeplasma_oculi -0.4841637 -3.1070209 -0.3086676
## Candida_albicans -0.4841637 -3.1070209 -0.3086676
## Candida_dubliniensis -0.4841637 -3.1070209 -0.3086676
## Candida_parapsilosis -0.4841637 -3.1070209 -0.3086676
## Malassezia_restricta -0.4841637 -3.1070209 -0.3086676
## Nakamurella_silvestris -0.4841637 -3.1070209 -0.3086676
## Alloprevotella_tannerae -0.4841637 -3.1070209 -0.3086676
## Prevotella_jejuni -0.4841637 -3.1070209 -0.3086676
## Prevotella_pallens -0.4841637 -3.1070209 -0.3086676
## Prevotella_salivae -0.4841637 -3.1070209 -0.3086676
## Prevotella_sp_oral_taxon_306 -0.4841637 -3.1070209 -0.3086676
## Prevotella_veroralis -0.4841637 -3.1070209 -0.3086676
## Tannerella_sp_oral_taxon_808 -0.4841637 -3.1070209 -0.3086676
## Tannerella_sp_oral_taxon_HOT_286 -0.4841637 -3.1070209 -0.3086676
## Capnocytophaga_gingivalis -0.4841637 -3.1070209 -0.3086676
## Bacillus_ginsengihumi -0.4841637 -3.1070209 -0.3086676
## Listeria_floridensis -0.4841637 -3.1070209 -0.3086676
## Agitococcus_lubricus -0.4841637 -3.1070209 -0.3086676
## Lactobacillus_fermentum -0.4841637 -3.1070209 -0.3086676
## Lactobacillus_gasseri -0.4841637 -3.1070209 -0.3086676
## Sharpea_azabuensis -0.4841637 -3.1070209 -0.3086676
## Streptococcus_mutans -0.4841637 -3.1070209 -0.3086676
## Oribacterium_asaccharolyticum -0.4841637 -3.1070209 -0.3086676
## Megasphaera_micronuciformis -0.4841637 -3.1070209 -0.3086676
## Neisseria_flavescens 6.6951443 5.3737158 -0.3086676
## Neisseria_subflava -0.4841637 3.2731017 -0.3086676
## Stenotrophomonas_maltophilia 10.3905572 8.6884787 9.9966785
## Stenotrophomonas_pavanii -0.4841637 5.5332745 6.6179094
## Stenotrophomonas_rhizophila -0.4841637 6.3685259 6.5778640
## Bacillus_intestinalis -0.4841637 -3.1070209 -0.3086676
## Listeria_innocua -0.4841637 -3.1070209 -0.3086676
## Listeria_monocytogenes -0.4841637 -3.1070209 -0.3086676
## Staphylococcus_haemolyticus -0.4841637 -3.1070209 -0.3086676
## Streptococcus_sobrinus -0.4841637 -3.1070209 -0.3086676
## Eggerthia_catenaformis -0.4841637 -3.1070209 -0.3086676
## Leptotrichia_sp_oral_taxon_498 -0.4841637 -3.1070209 -0.3086676
## Rickettsia_felis -0.4841637 -3.1070209 -0.3086676
## Haemophilus_parainfluenzae -0.4841637 -3.1070209 -0.3086676
## Candida_orthopsilosis -0.4841637 -3.1070209 -0.3086676
## Nannocystis_exedens -0.4841637 -3.1070209 -0.3086676
## Campylobacter_concisus -0.4841637 -3.1070209 -0.3086676
## Franconibacter_helveticus -0.4841637 -3.1070209 -0.3086676
## Klebsiella_pneumoniae -0.4841637 -3.1070209 -0.3086676
## Salmonella_enterica -0.4841637 -3.1070209 -0.3086676
## Superficieibacter_electus -0.4841637 -3.1070209 -0.3086676
## Pseudomonas_fluorescens -0.4841637 -3.1070209 -0.3086676
## Saccharomyces_cerevisiae -0.4841637 -3.1070209 -0.3086676
## S._cerevisiae x S._kudriavzevii -0.4841637 -3.1070209 -0.3086676
## Saccharomyces_kudriavzevii -0.4841637 -3.1070209 -0.3086676
## Cryptococcus_gattii_VGI -0.4841637 -3.1070209 -0.3086676
## Cryptococcus_gattii_VGII -0.4841637 -3.1070209 -0.3086676
## Cryptococcus_gattii_VGIII -0.4841637 -3.1070209 -0.3086676
## Cryptococcus_neoformans -0.4841637 -3.1070209 -0.3086676
## Listeria_marthii -0.4841637 -3.1070209 -0.3086676
## Erwinia_persicina -0.4841637 -3.1070209 -0.3086676
## Pseudomonas_formosensis -0.4841637 -3.1070209 -0.3086676
## Pseudomonas_putida -0.4841637 -3.1070209 -0.3086676
## CFB_d_benzonase CFB_c_qiaamp CFB_c_molysis
## Actinobaculum_sp_oral_taxon_183 -0.9179525 5.7243289 4.879144589
## Actinomyces_georgiae -0.9179525 -3.7884097 -0.303528542
## Actinomyces_graevenitzii -0.9179525 8.5970259 9.071901611
## Actinomyces_hongkongensis -0.9179525 -3.7884097 -0.009677418
## Actinomyces_johnsonii -0.9179525 -3.7884097 -5.611796239
## Actinomyces_massiliensis -0.9179525 -3.7884097 1.944631730
## Actinomyces_meyeri -0.9179525 -3.7884097 0.288101114
## Actinomyces_naeslundii -0.9179525 4.7297830 3.302829889
## Actinomyces_odontolyticus -0.9179525 8.0464688 7.914924967
## Actinomyces_oris 5.8272839 6.3670032 8.711228064
## Actinomyces_sp_HMSC035G02 -0.9179525 6.9912547 6.987061461
## Actinomyces_sp_HPA0247 -0.9179525 5.9594177 5.627849605
## Actinomyces_sp_ICM47 -0.9179525 6.0472807 5.876498361
## Actinomyces_sp_S6_Spd3 -0.9179525 8.3446513 8.166156782
## Actinomyces_sp_oral_taxon_170 -0.9179525 2.6085199 2.449690628
## Actinomyces_sp_oral_taxon_180 -0.9179525 4.1294909 3.509822203
## Actinomyces_sp_oral_taxon_181 -0.9179525 9.2096527 9.032188404
## Actinomyces_sp_oral_taxon_414 -0.9179525 0.2546416 2.655139108
## Actinomyces_sp_oral_taxon_448 -0.9179525 -3.7884097 -5.611796239
## Actinomyces_sp_oral_taxon_897 -0.9179525 -3.7884097 -5.611796239
## Actinomyces_viscosus -0.9179525 5.5795325 3.460086340
## Aeriscardovia_aeriphila -0.9179525 3.4149958 2.738397412
## Alloscardovia_omnicolens -0.9179525 6.4918691 5.885589101
## Bifidobacterium_dentium -0.9179525 2.1517615 1.706079959
## Bifidobacterium_longum -0.9179525 -3.7884097 0.540936456
## Scardovia_wiggsiae -0.9179525 6.9244958 4.605114229
## Corynebacterium_accolens -0.9179525 -3.7884097 -5.611796239
## Corynebacterium_atypicum -0.9179525 -3.7884097 -5.611796239
## Corynebacterium_durum -0.9179525 2.7083653 1.361746780
## Corynebacterium_matruchotii -0.9179525 -3.7884097 4.382856551
## Corynebacterium_pseudodiphtheriticum -0.9179525 -3.7884097 1.483268138
## Corynebacterium_pseudogenitalium -0.9179525 -3.7884097 -5.611796239
## Corynebacterium_tuberculostearicum -0.9179525 -3.7884097 -5.611796239
## Rothia_aeria -0.9179525 4.1764412 2.246844416
## Rothia_dentocariosa 6.6468045 9.1085350 8.816401163
## Rothia_mucilaginosa 7.5689877 10.1585071 10.170110335
## Cutibacterium_acnes -0.9179525 -3.7884097 2.173508943
## Cutibacterium_granulosum -0.9179525 -3.7884097 -5.611796239
## Propionibacterium_humerusii -0.9179525 -3.7884097 -5.611796239
## Propionibacterium_namnetense -0.9179525 -3.7884097 -5.611796239
## Propionibacterium_acidifaciens -0.9179525 -3.7884097 -5.611796239
## Pseudopropionibacterium_propionicum -0.9179525 2.0580291 2.657960708
## Atopobium_deltae -0.9179525 -3.7884097 -5.611796239
## Atopobium_parvulum -0.9179525 6.4906678 6.073206825
## Atopobium_rimae -0.9179525 5.6631499 5.321364301
## Olsenella_profusa -0.9179525 1.3295841 2.457233090
## Olsenella_scatoligenes -0.9179525 3.2823144 2.718826381
## Olsenella_uli -0.9179525 3.3344569 3.485039432
## Collinsella_aerofaciens -0.9179525 2.8356555 2.571042472
## Collinsella_intestinalis -0.9179525 0.2189235 1.512682023
## Collinsella_stercoris -0.9179525 1.9384380 1.616592212
## Enorma_massiliensis -0.9179525 1.8319911 0.911766067
## [Collinsella]_massiliensis -0.9179525 2.9485572 2.651794193
## Asaccharobacter_celatus -0.9179525 -3.7884097 0.596793787
## Denitrobacterium_detoxificans -0.9179525 0.4882564 -0.641982940
## Enterorhabdus_caecimuris -0.9179525 -3.7884097 -0.607849933
## Slackia_exigua -0.9179525 4.0526900 3.281089902
## Slackia_isoflavoniconvertens -0.9179525 1.8745508 1.967882584
## Rubrobacter_radiotolerans -0.9179525 -3.7884097 -0.250504073
## Thermoleophilum_album -0.9179525 1.6583277 1.826587291
## Porphyromonas_endodontalis -0.9179525 -3.7884097 -5.611796239
## Porphyromonas_somerae -0.9179525 -3.7884097 -5.611796239
## Prevotella_histicola -0.9179525 -3.7884097 1.666142334
## Prevotella_melaninogenica -0.9179525 -3.7884097 -5.611796239
## Prevotella_oris -0.9179525 -3.7884097 -5.611796239
## Kouleothrix_aurantiaca -0.9179525 -3.7884097 0.791777959
## Hydrogenibacillus_schlegelii -0.9179525 -3.7884097 0.730325180
## Gemella_asaccharolytica -0.9179525 -3.7884097 -5.611796239
## Gemella_bergeri -0.9179525 4.9338445 4.221590686
## Gemella_haemolysans 8.6472612 6.9482043 6.482813979
## Gemella_morbillorum -0.9179525 5.2094797 5.083030880
## Gemella_sanguinis 7.9328517 8.3223407 7.916775970
## Brochothrix_campestris -0.9179525 -0.1248481 0.814692218
## Staphylococcus_argenteus 10.0104829 7.2426177 6.843773629
## Staphylococcus_aureus 13.5286995 10.3171244 9.681558845
## Staphylococcus_epidermidis -0.9179525 -3.7884097 -5.611796239
## Staphylococcus_schweitzeri 6.6384755 4.5563330 3.513095171
## Abiotrophia_defectiva -0.9179525 4.0882287 3.848134854
## Abiotrophia_sp_HMSC24B09 -0.9179525 4.5320384 4.168506213
## Dolosigranulum_pigrum -0.9179525 -3.7884097 1.729039315
## Granulicatella_adiacens -0.9179525 3.9964796 3.065302470
## Granulicatella_elegans 3.9648494 6.6893852 6.665889841
## Enterococcus_faecalis -0.9179525 -3.7884097 -5.611796239
## Lactobacillus_rhamnosus -0.9179525 -3.7884097 -5.611796239
## Streptococcus_anginosus 5.5773131 4.8909023 5.436471283
## Streptococcus_australis 7.5494200 5.8604436 4.902706104
## Streptococcus_cristatus -0.9179525 5.3339734 4.676817650
## Streptococcus_gordonii -0.9179525 5.8078051 5.513862518
## Streptococcus_infantis 7.7168459 7.3593621 7.692922028
## Streptococcus_milleri -0.9179525 -3.7884097 -5.611796239
## Streptococcus_mitis 6.3205443 5.7811424 7.341753142
## Streptococcus_oralis 7.2858989 6.5730405 7.147071846
## Streptococcus_parasanguinis 7.7325471 10.4599736 10.326950951
## Streptococcus_peroris 5.3026377 6.8954801 7.213572505
## Streptococcus_pneumoniae -0.9179525 -3.7884097 4.557434478
## Streptococcus_pseudopneumoniae -0.9179525 3.4721129 2.475844049
## Streptococcus_salivarius 5.5036698 9.7398867 9.596207925
## Streptococcus_sanguinis -0.9179525 8.1349618 8.134585009
## Streptococcus_sp_A12 -0.9179525 3.9835005 2.856206708
## Streptococcus_sp_F0442 -0.9179525 6.5082004 6.593856318
## Streptococcus_sp_HMSC034E03 -0.9179525 -3.7884097 2.050201320
## Streptococcus_sp_HMSC067H01 -0.9179525 -3.7884097 1.870885589
## Streptococcus_sp_HMSC071D03 -0.9179525 -3.7884097 1.444379045
## Streptococcus_sp_HPH0090 -0.9179525 2.6413098 4.153290944
## Streptococcus_sp_M334 -0.9179525 3.9046160 4.178074587
## Streptococcus_vestibularis -0.9179525 5.4616320 5.979191512
## Eubacterium_brachy -0.9179525 4.1888723 2.802477898
## Eubacterium_infirmum -0.9179525 3.4636442 2.259133358
## Eubacterium_nodatum -0.9179525 -3.7884097 -5.611796239
## Eubacterium_sulci -0.9179525 2.4059957 2.770035314
## Mogibacterium_diversum -0.9179525 7.1565023 6.615323357
## Mogibacterium_pumilum -0.9179525 3.5736008 2.883151343
## Mogibacterium_timidum -0.9179525 2.7482819 2.437950052
## Lachnoanaerobaculum_saburreum -0.9179525 5.1151337 4.162265766
## Oribacterium_parvum -0.9179525 -3.7884097 -5.611796239
## Oribacterium_sinus -0.9179525 6.9516975 5.774635865
## Oribacterium_sp_oral_taxon_078 -0.9179525 -3.7884097 1.400319055
## Stomatobaculum_longum -0.9179525 -3.7884097 2.416006609
## Peptostreptococcus_stomatis -0.9179525 2.8566813 2.826786552
## Bulleidia_extructa -0.9179525 1.6796504 0.642032572
## Solobacterium_moorei -0.9179525 5.6704300 5.347274312
## Limnochorda_pilosa -0.9179525 3.4407042 3.072435652
## Veillonella_atypica -0.9179525 -3.7884097 3.582617982
## Veillonella_dispar -0.9179525 -3.7884097 3.413659294
## Veillonella_infantium -0.9179525 -3.7884097 2.680752275
## Veillonella_parvula -0.9179525 -3.7884097 1.373845578
## Veillonella_sp_T11011_6 -0.9179525 -3.7884097 3.401311963
## Anaerococcus_nagyae -0.9179525 -3.7884097 -5.611796239
## Finegoldia_magna -0.9179525 -3.7884097 -5.611796239
## Parvimonas_micra -0.9179525 7.3268551 5.988627151
## Parvimonas_sp_oral_taxon_110 -0.9179525 3.9091656 3.610867883
## Parvimonas_sp_oral_taxon_393 -0.9179525 3.8660335 2.545574202
## Fusobacterium_nucleatum -0.9179525 -3.7884097 2.340467070
## Leptotrichia_wadei -0.9179525 -3.7884097 0.622614487
## Gemmata_obscuriglobus -0.9179525 2.3957392 1.670277419
## Paludisphaera_borealis -0.9179525 -3.7884097 2.016721387
## Achromobacter_xylosoxidans -0.9179525 -3.7884097 -5.611796239
## Cupriavidus_sp -0.9179525 5.5452097 6.661509731
## Sutterella_parvirubra -0.9179525 -3.7884097 0.993501682
## Anaerobiospirillum_thomasii -0.9179525 -3.7884097 2.272403695
## Cardiobacterium_hominis -0.9179525 -3.7884097 -5.611796239
## Cardiobacterium_valvarum -0.9179525 -3.7884097 -5.611796239
## Alkalilimnicola_ehrlichii -0.9179525 -3.7884097 -5.611796239
## Escherichia_coli -0.9179525 -3.7884097 -5.611796239
## Thiohalorhabdus_denitrificans -0.9179525 0.4882564 -1.363300997
## Pseudomonas_aeruginosa 8.1852480 6.6545492 4.374054404
## Acholeplasma_oculi 3.9947024 0.4456968 1.113237403
## Candida_albicans -0.9179525 -3.7884097 -5.611796239
## Candida_dubliniensis -0.9179525 -3.7884097 -5.611796239
## Candida_parapsilosis -0.9179525 -3.7884097 -5.611796239
## Malassezia_restricta -0.9179525 -3.7884097 -5.611796239
## Nakamurella_silvestris -0.9179525 -3.7884097 -5.611796239
## Alloprevotella_tannerae -0.9179525 -3.7884097 -5.611796239
## Prevotella_jejuni -0.9179525 -3.7884097 -5.611796239
## Prevotella_pallens -0.9179525 -3.7884097 -5.611796239
## Prevotella_salivae -0.9179525 -3.7884097 -5.611796239
## Prevotella_sp_oral_taxon_306 -0.9179525 -3.7884097 -5.611796239
## Prevotella_veroralis -0.9179525 -3.7884097 -5.611796239
## Tannerella_sp_oral_taxon_808 -0.9179525 -3.7884097 -5.611796239
## Tannerella_sp_oral_taxon_HOT_286 -0.9179525 -3.7884097 -5.611796239
## Capnocytophaga_gingivalis -0.9179525 2.1304841 -5.611796239
## Bacillus_ginsengihumi -0.9179525 -3.7884097 -5.611796239
## Listeria_floridensis -0.9179525 -3.7884097 -5.611796239
## Agitococcus_lubricus -0.9179525 -3.7884097 -5.611796239
## Lactobacillus_fermentum -0.9179525 -3.7884097 -5.611796239
## Lactobacillus_gasseri -0.9179525 -3.7884097 0.580566250
## Sharpea_azabuensis -0.9179525 -3.7884097 -0.066618795
## Streptococcus_mutans -0.9179525 3.6823841 4.548540397
## Oribacterium_asaccharolyticum -0.9179525 2.2518450 0.237528541
## Megasphaera_micronuciformis -0.9179525 -3.7884097 -5.611796239
## Neisseria_flavescens 7.2132841 -3.7884097 1.647319889
## Neisseria_subflava 6.7007899 -3.7884097 0.098630778
## Stenotrophomonas_maltophilia 9.3742269 -3.7884097 -5.611796239
## Stenotrophomonas_pavanii -0.9179525 -3.7884097 -5.611796239
## Stenotrophomonas_rhizophila 6.0086245 -3.7884097 -5.611796239
## Bacillus_intestinalis -0.9179525 -3.7884097 -5.611796239
## Listeria_innocua -0.9179525 -3.7884097 -5.611796239
## Listeria_monocytogenes -0.9179525 -3.7884097 -5.611796239
## Staphylococcus_haemolyticus -0.9179525 -3.7884097 -5.611796239
## Streptococcus_sobrinus -0.9179525 -3.7884097 -5.611796239
## Eggerthia_catenaformis -0.9179525 2.8936989 -5.611796239
## Leptotrichia_sp_oral_taxon_498 -0.9179525 -3.7884097 -5.611796239
## Rickettsia_felis -0.9179525 -3.7884097 -5.611796239
## Haemophilus_parainfluenzae -0.9179525 -3.7884097 -5.611796239
## Candida_orthopsilosis -0.9179525 -3.7884097 -5.611796239
## Nannocystis_exedens -0.9179525 -3.7884097 -5.611796239
## Campylobacter_concisus -0.9179525 -3.7884097 -5.611796239
## Franconibacter_helveticus -0.9179525 -3.7884097 -5.611796239
## Klebsiella_pneumoniae -0.9179525 -3.7884097 -5.611796239
## Salmonella_enterica -0.9179525 -3.7884097 -5.611796239
## Superficieibacter_electus -0.9179525 -3.7884097 -5.611796239
## Pseudomonas_fluorescens -0.9179525 -3.7884097 -5.611796239
## Saccharomyces_cerevisiae -0.9179525 -3.7884097 -5.611796239
## S._cerevisiae x S._kudriavzevii -0.9179525 -3.7884097 -5.611796239
## Saccharomyces_kudriavzevii -0.9179525 -3.7884097 -5.611796239
## Cryptococcus_gattii_VGI -0.9179525 -3.7884097 -5.611796239
## Cryptococcus_gattii_VGII -0.9179525 -3.7884097 -5.611796239
## Cryptococcus_gattii_VGIII -0.9179525 -3.7884097 -5.611796239
## Cryptococcus_neoformans -0.9179525 -3.7884097 -5.611796239
## Listeria_marthii -0.9179525 -3.7884097 -5.611796239
## Erwinia_persicina -0.9179525 -3.7884097 -5.611796239
## Pseudomonas_formosensis -0.9179525 -3.7884097 -5.611796239
## Pseudomonas_putida -0.9179525 -3.7884097 -5.611796239
## CFB_c_lyPMA CFB_c_host_zero CFB_c_control
## Actinobaculum_sp_oral_taxon_183 -1.633684 5.01430286 -0.334129
## Actinomyces_georgiae -1.633684 -4.95875739 -0.334129
## Actinomyces_graevenitzii 7.226674 9.23159273 6.504276
## Actinomyces_hongkongensis -1.633684 -4.95875739 -0.334129
## Actinomyces_johnsonii -1.633684 -4.95875739 -0.334129
## Actinomyces_massiliensis -1.633684 1.83694838 -0.334129
## Actinomyces_meyeri -1.633684 0.91617334 -0.334129
## Actinomyces_naeslundii -1.633684 3.88384709 -0.334129
## Actinomyces_odontolyticus 4.687085 7.93867584 -0.334129
## Actinomyces_oris 6.857371 6.79428673 -0.334129
## Actinomyces_sp_HMSC035G02 2.785157 6.98609983 -0.334129
## Actinomyces_sp_HPA0247 -1.633684 5.74807613 -0.334129
## Actinomyces_sp_ICM47 -1.633684 5.81585615 -0.334129
## Actinomyces_sp_S6_Spd3 6.511866 8.30835720 -0.334129
## Actinomyces_sp_oral_taxon_170 -1.633684 2.77842268 -0.334129
## Actinomyces_sp_oral_taxon_180 -1.633684 3.10462043 -0.334129
## Actinomyces_sp_oral_taxon_181 7.383679 9.14506629 -0.334129
## Actinomyces_sp_oral_taxon_414 -1.633684 2.69045893 -0.334129
## Actinomyces_sp_oral_taxon_448 -1.633684 -4.95875739 -0.334129
## Actinomyces_sp_oral_taxon_897 -1.633684 -4.95875739 -0.334129
## Actinomyces_viscosus -1.633684 4.27822491 -0.334129
## Aeriscardovia_aeriphila -1.633684 3.29134036 -0.334129
## Alloscardovia_omnicolens -1.633684 6.30275364 -0.334129
## Bifidobacterium_dentium -1.633684 1.32350935 -0.334129
## Bifidobacterium_longum -1.633684 -4.95875739 -0.334129
## Scardovia_wiggsiae 3.703854 4.77997343 -0.334129
## Corynebacterium_accolens -1.633684 -4.95875739 -0.334129
## Corynebacterium_atypicum -1.633684 -4.95875739 -0.334129
## Corynebacterium_durum -1.633684 2.69521179 -0.334129
## Corynebacterium_matruchotii -1.633684 3.33978215 -0.334129
## Corynebacterium_pseudodiphtheriticum -1.633684 0.90487378 -0.334129
## Corynebacterium_pseudogenitalium -1.633684 -4.95875739 -0.334129
## Corynebacterium_tuberculostearicum -1.633684 -4.95875739 -0.334129
## Rothia_aeria -1.633684 3.81354302 -0.334129
## Rothia_dentocariosa 8.147975 8.95173784 5.245601
## Rothia_mucilaginosa 9.430138 10.01072353 6.520226
## Cutibacterium_acnes -1.633684 2.43573571 -0.334129
## Cutibacterium_granulosum -1.633684 -4.95875739 -0.334129
## Propionibacterium_humerusii -1.633684 -4.95875739 -0.334129
## Propionibacterium_namnetense -1.633684 -4.95875739 -0.334129
## Propionibacterium_acidifaciens -1.633684 -4.95875739 -0.334129
## Pseudopropionibacterium_propionicum -1.633684 2.41837632 -0.334129
## Atopobium_deltae -1.633684 -4.95875739 -0.334129
## Atopobium_parvulum 4.697818 6.38496805 -0.334129
## Atopobium_rimae -1.633684 5.51635921 -0.334129
## Olsenella_profusa -1.633684 2.47785987 -0.334129
## Olsenella_scatoligenes -1.633684 3.11931049 -0.334129
## Olsenella_uli -1.633684 3.67337034 -0.334129
## Collinsella_aerofaciens -1.633684 2.65851042 -0.334129
## Collinsella_intestinalis -1.633684 1.48218915 -0.334129
## Collinsella_stercoris -1.633684 1.75054695 -0.334129
## Enorma_massiliensis -1.633684 1.63975164 -0.334129
## [Collinsella]_massiliensis -1.633684 3.00644090 -0.334129
## Asaccharobacter_celatus -1.633684 -0.35358721 -0.334129
## Denitrobacterium_detoxificans -1.633684 -0.62802405 -0.334129
## Enterorhabdus_caecimuris -1.633684 -4.95875739 -0.334129
## Slackia_exigua -1.633684 3.64589707 -0.334129
## Slackia_isoflavoniconvertens -1.633684 2.65259032 -0.334129
## Rubrobacter_radiotolerans -1.633684 -4.95875739 -0.334129
## Thermoleophilum_album -1.633684 1.74197372 -0.334129
## Porphyromonas_endodontalis -1.633684 1.85907318 -0.334129
## Porphyromonas_somerae -1.633684 -4.95875739 -0.334129
## Prevotella_histicola 7.670602 4.69350858 6.334099
## Prevotella_melaninogenica -1.633684 1.75298300 -0.334129
## Prevotella_oris -1.633684 -4.95875739 -0.334129
## Kouleothrix_aurantiaca -1.633684 -4.95875739 -0.334129
## Hydrogenibacillus_schlegelii -1.633684 -4.95875739 -0.334129
## Gemella_asaccharolytica -1.633684 -4.95875739 -0.334129
## Gemella_bergeri -1.633684 4.86995273 -0.334129
## Gemella_haemolysans 5.715547 6.77102792 -0.334129
## Gemella_morbillorum 3.453913 5.19630566 -0.334129
## Gemella_sanguinis 6.604589 8.11787404 -0.334129
## Brochothrix_campestris -1.633684 0.45734301 -0.334129
## Staphylococcus_argenteus 5.258958 6.35074136 -0.334129
## Staphylococcus_aureus 8.244794 9.05859872 -0.334129
## Staphylococcus_epidermidis -1.633684 -4.95875739 -0.334129
## Staphylococcus_schweitzeri -1.633684 3.29081776 -0.334129
## Abiotrophia_defectiva -1.633684 4.35810282 -0.334129
## Abiotrophia_sp_HMSC24B09 -1.633684 4.34961672 -0.334129
## Dolosigranulum_pigrum -1.633684 0.23973964 -0.334129
## Granulicatella_adiacens -1.633684 3.35067335 -0.334129
## Granulicatella_elegans 5.984076 6.94237172 -0.334129
## Enterococcus_faecalis -1.633684 -4.95875739 -0.334129
## Lactobacillus_rhamnosus -1.633684 2.61938808 -0.334129
## Streptococcus_anginosus -1.633684 5.73186847 -0.334129
## Streptococcus_australis 3.957303 4.96188222 -0.334129
## Streptococcus_cristatus -1.633684 4.67789592 -0.334129
## Streptococcus_gordonii 4.800863 5.37156529 -0.334129
## Streptococcus_infantis 7.441753 7.47500047 -0.334129
## Streptococcus_milleri -1.633684 2.49190340 -0.334129
## Streptococcus_mitis 7.200799 6.75753332 3.914366
## Streptococcus_oralis 6.546917 6.91199635 -0.334129
## Streptococcus_parasanguinis 9.996509 10.36326626 7.089439
## Streptococcus_peroris 6.435033 7.37517622 -0.334129
## Streptococcus_pneumoniae -1.633684 -4.95875739 -0.334129
## Streptococcus_pseudopneumoniae -1.633684 3.14775712 -0.334129
## Streptococcus_salivarius 8.345561 9.46272132 7.231664
## Streptococcus_sanguinis 7.469851 8.14678327 -0.334129
## Streptococcus_sp_A12 -1.633684 3.45529504 -0.334129
## Streptococcus_sp_F0442 5.750306 6.48072603 -0.334129
## Streptococcus_sp_HMSC034E03 -1.633684 -4.95875739 -0.334129
## Streptococcus_sp_HMSC067H01 -1.633684 -4.95875739 -0.334129
## Streptococcus_sp_HMSC071D03 -1.633684 -4.95875739 -0.334129
## Streptococcus_sp_HPH0090 -1.633684 3.40365158 -0.334129
## Streptococcus_sp_M334 4.439361 3.89761864 -0.334129
## Streptococcus_vestibularis 5.597603 6.18897120 -0.334129
## Eubacterium_brachy -1.633684 2.81230969 -0.334129
## Eubacterium_infirmum -1.633684 2.15519872 -0.334129
## Eubacterium_nodatum -1.633684 -4.95875739 -0.334129
## Eubacterium_sulci -1.633684 2.47313452 -0.334129
## Mogibacterium_diversum 4.627808 6.91416150 -0.334129
## Mogibacterium_pumilum -1.633684 3.03486260 -0.334129
## Mogibacterium_timidum -1.633684 3.02944620 -0.334129
## Lachnoanaerobaculum_saburreum -1.633684 5.15790418 -0.334129
## Oribacterium_parvum -1.633684 -4.95875739 -0.334129
## Oribacterium_sinus 6.608283 6.51496976 -0.334129
## Oribacterium_sp_oral_taxon_078 -1.633684 2.06855712 -0.334129
## Stomatobaculum_longum 5.784497 -4.95875739 -0.334129
## Peptostreptococcus_stomatis -1.633684 2.52336153 -0.334129
## Bulleidia_extructa -1.633684 1.62326775 -0.334129
## Solobacterium_moorei -1.633684 5.59212132 -0.334129
## Limnochorda_pilosa -1.633684 3.62758866 -0.334129
## Veillonella_atypica 7.165978 -4.95875739 6.288607
## Veillonella_dispar 5.776058 0.48797998 5.286272
## Veillonella_infantium 4.043070 -4.95875739 -0.334129
## Veillonella_parvula -1.633684 0.03845488 -0.334129
## Veillonella_sp_T11011_6 5.811150 -4.95875739 -0.334129
## Anaerococcus_nagyae -1.633684 -4.95875739 -0.334129
## Finegoldia_magna -1.633684 -4.95875739 -0.334129
## Parvimonas_micra 5.495614 6.54407733 -0.334129
## Parvimonas_sp_oral_taxon_110 -1.633684 3.73758566 -0.334129
## Parvimonas_sp_oral_taxon_393 -1.633684 3.08136727 -0.334129
## Fusobacterium_nucleatum -1.633684 0.97877881 -0.334129
## Leptotrichia_wadei 5.080487 -4.95875739 -0.334129
## Gemmata_obscuriglobus -1.633684 -4.95875739 -0.334129
## Paludisphaera_borealis -1.633684 1.46934788 -0.334129
## Achromobacter_xylosoxidans -1.633684 -4.95875739 -0.334129
## Cupriavidus_sp -1.633684 6.60537436 -0.334129
## Sutterella_parvirubra 3.128490 0.46177761 -0.334129
## Anaerobiospirillum_thomasii -1.633684 1.53952476 -0.334129
## Cardiobacterium_hominis -1.633684 -4.95875739 -0.334129
## Cardiobacterium_valvarum -1.633684 -4.95875739 -0.334129
## Alkalilimnicola_ehrlichii -1.633684 -4.95875739 -0.334129
## Escherichia_coli -1.633684 -4.95875739 -0.334129
## Thiohalorhabdus_denitrificans 3.664634 -0.30479704 -0.334129
## Pseudomonas_aeruginosa 10.431252 5.16354435 10.072344
## Acholeplasma_oculi -1.633684 1.26975361 -0.334129
## Candida_albicans -1.633684 -4.95875739 -0.334129
## Candida_dubliniensis -1.633684 -4.95875739 -0.334129
## Candida_parapsilosis -1.633684 -4.95875739 -0.334129
## Malassezia_restricta -1.633684 -4.95875739 -0.334129
## Nakamurella_silvestris -1.633684 -4.95875739 -0.334129
## Alloprevotella_tannerae -1.633684 -4.95875739 -0.334129
## Prevotella_jejuni -1.633684 -1.02693176 -0.334129
## Prevotella_pallens -1.633684 -4.95875739 -0.334129
## Prevotella_salivae -1.633684 3.27421440 -0.334129
## Prevotella_sp_oral_taxon_306 -1.633684 -4.95875739 -0.334129
## Prevotella_veroralis -1.633684 -4.95875739 -0.334129
## Tannerella_sp_oral_taxon_808 -1.633684 -4.95875739 -0.334129
## Tannerella_sp_oral_taxon_HOT_286 -1.633684 -4.95875739 -0.334129
## Capnocytophaga_gingivalis -1.633684 3.65229037 -0.334129
## Bacillus_ginsengihumi -1.633684 -4.95875739 -0.334129
## Listeria_floridensis -1.633684 -4.95875739 -0.334129
## Agitococcus_lubricus -1.633684 -4.95875739 -0.334129
## Lactobacillus_fermentum -1.633684 -4.95875739 -0.334129
## Lactobacillus_gasseri -1.633684 -4.95875739 -0.334129
## Sharpea_azabuensis -1.633684 -4.95875739 -0.334129
## Streptococcus_mutans -1.633684 3.37715370 -0.334129
## Oribacterium_asaccharolyticum -1.633684 2.32880325 -0.334129
## Megasphaera_micronuciformis -1.633684 -4.95875739 -0.334129
## Neisseria_flavescens 6.657863 2.03333903 -0.334129
## Neisseria_subflava 4.768234 -4.95875739 -0.334129
## Stenotrophomonas_maltophilia -1.633684 1.73951066 -0.334129
## Stenotrophomonas_pavanii -1.633684 -4.95875739 -0.334129
## Stenotrophomonas_rhizophila -1.633684 -4.95875739 -0.334129
## Bacillus_intestinalis -1.633684 -4.95875739 -0.334129
## Listeria_innocua -1.633684 -4.95875739 -0.334129
## Listeria_monocytogenes -1.633684 -4.95875739 -0.334129
## Staphylococcus_haemolyticus -1.633684 -4.95875739 -0.334129
## Streptococcus_sobrinus -1.633684 -4.95875739 -0.334129
## Eggerthia_catenaformis -1.633684 3.18243240 -0.334129
## Leptotrichia_sp_oral_taxon_498 -1.633684 -4.95875739 -0.334129
## Rickettsia_felis -1.633684 -4.95875739 -0.334129
## Haemophilus_parainfluenzae -1.633684 -4.95875739 -0.334129
## Candida_orthopsilosis -1.633684 -4.95875739 -0.334129
## Nannocystis_exedens -1.633684 -4.95875739 -0.334129
## Campylobacter_concisus -1.633684 -4.95875739 -0.334129
## Franconibacter_helveticus -1.633684 -4.95875739 -0.334129
## Klebsiella_pneumoniae -1.633684 -4.95875739 -0.334129
## Salmonella_enterica -1.633684 -4.95875739 -0.334129
## Superficieibacter_electus -1.633684 -4.95875739 -0.334129
## Pseudomonas_fluorescens -1.633684 -4.95875739 -0.334129
## Saccharomyces_cerevisiae -1.633684 -4.95875739 -0.334129
## S._cerevisiae x S._kudriavzevii -1.633684 -4.95875739 -0.334129
## Saccharomyces_kudriavzevii -1.633684 -4.95875739 -0.334129
## Cryptococcus_gattii_VGI -1.633684 -4.95875739 -0.334129
## Cryptococcus_gattii_VGII -1.633684 -4.95875739 -0.334129
## Cryptococcus_gattii_VGIII -1.633684 -4.95875739 -0.334129
## Cryptococcus_neoformans -1.633684 -4.95875739 -0.334129
## Listeria_marthii -1.633684 -4.95875739 -0.334129
## Erwinia_persicina -1.633684 -4.95875739 -0.334129
## Pseudomonas_formosensis -1.633684 -4.95875739 -0.334129
## Pseudomonas_putida -1.633684 -4.95875739 -0.334129
## CFB_c_benzonase CFB_b_qiaamp CFB_b_molysis
## Actinobaculum_sp_oral_taxon_183 4.1756107 2.51055921 6.54733222
## Actinomyces_georgiae -3.7581861 2.67340319 2.90668269
## Actinomyces_graevenitzii 8.4108282 4.87717474 5.88562519
## Actinomyces_hongkongensis -3.7581861 2.09791626 2.09242094
## Actinomyces_johnsonii -3.7581861 5.24102640 4.85441302
## Actinomyces_massiliensis -3.7581861 5.88669439 5.24026317
## Actinomyces_meyeri -3.7581861 3.01969290 2.53652332
## Actinomyces_naeslundii -3.7581861 4.33378627 4.50023503
## Actinomyces_odontolyticus 6.9036041 7.79044376 7.99026053
## Actinomyces_oris 6.0705240 7.40149481 7.34048364
## Actinomyces_sp_HMSC035G02 5.5790512 6.95338639 7.00416593
## Actinomyces_sp_HPA0247 4.5386097 8.17323971 8.27767106
## Actinomyces_sp_ICM47 4.4864106 6.11475936 6.42202422
## Actinomyces_sp_S6_Spd3 7.4716202 4.77814355 4.90538016
## Actinomyces_sp_oral_taxon_170 -3.7581861 3.23064837 2.74771843
## Actinomyces_sp_oral_taxon_180 1.9489241 4.42322740 4.45509737
## Actinomyces_sp_oral_taxon_181 8.3280100 5.97653891 6.08127005
## Actinomyces_sp_oral_taxon_414 -3.7581861 -4.82767894 3.21578219
## Actinomyces_sp_oral_taxon_448 -3.7581861 5.10764637 4.91755229
## Actinomyces_sp_oral_taxon_897 -3.7581861 4.90632431 4.32254808
## Actinomyces_viscosus 3.2087810 2.43775079 3.77823392
## Aeriscardovia_aeriphila 2.8856036 1.46574034 2.31289521
## Alloscardovia_omnicolens 5.3917671 3.23001526 3.41771297
## Bifidobacterium_dentium -3.7581861 3.38271732 4.54251867
## Bifidobacterium_longum -3.7581861 2.88431757 3.10264766
## Scardovia_wiggsiae 4.2528372 4.61725914 4.30247677
## Corynebacterium_accolens -3.7581861 -4.82767894 -1.59415089
## Corynebacterium_atypicum -3.7581861 -4.82767894 -1.14474808
## Corynebacterium_durum -3.7581861 2.76871337 2.71698137
## Corynebacterium_matruchotii -3.7581861 3.40688606 5.20900009
## Corynebacterium_pseudodiphtheriticum -3.7581861 -4.82767894 -6.54291078
## Corynebacterium_pseudogenitalium -3.7581861 -4.82767894 -6.54291078
## Corynebacterium_tuberculostearicum -3.7581861 -4.82767894 -6.54291078
## Rothia_aeria -3.7581861 3.63294390 3.90976698
## Rothia_dentocariosa 8.1880012 5.74225242 5.48417275
## Rothia_mucilaginosa 8.8860898 8.57943773 8.57370383
## Cutibacterium_acnes -3.7581861 2.12504971 2.56661429
## Cutibacterium_granulosum -3.7581861 -4.82767894 -6.54291078
## Propionibacterium_humerusii -3.7581861 -4.82767894 -6.54291078
## Propionibacterium_namnetense -3.7581861 -4.82767894 -6.54291078
## Propionibacterium_acidifaciens -3.7581861 2.70333740 3.14005478
## Pseudopropionibacterium_propionicum 2.4898567 4.63838834 4.45810514
## Atopobium_deltae -3.7581861 0.03213347 -1.23464308
## Atopobium_parvulum 5.4229314 5.51696257 5.48306583
## Atopobium_rimae 4.3102168 4.95471385 4.85354828
## Olsenella_profusa -3.7581861 3.38407546 3.48341368
## Olsenella_scatoligenes 0.6844651 3.16560339 3.31317065
## Olsenella_uli -3.7581861 4.11765368 4.46130349
## Collinsella_aerofaciens 0.6606545 1.89254122 2.51753650
## Collinsella_intestinalis 0.2671655 1.95564627 1.94237886
## Collinsella_stercoris -3.7581861 2.44541366 2.40904739
## Enorma_massiliensis -3.7581861 1.63378924 1.76996062
## [Collinsella]_massiliensis 1.9422574 2.65218520 3.30949398
## Asaccharobacter_celatus -3.7581861 -4.82767894 1.46478924
## Denitrobacterium_detoxificans -3.7581861 1.01296272 1.03931842
## Enterorhabdus_caecimuris -3.7581861 -4.82767894 0.96532800
## Slackia_exigua 1.6885512 3.94477644 4.66620323
## Slackia_isoflavoniconvertens 1.2116272 1.46943038 2.80283423
## Rubrobacter_radiotolerans -3.7581861 -4.82767894 -0.26438935
## Thermoleophilum_album -3.7581861 0.61040037 1.53049219
## Porphyromonas_endodontalis -3.7581861 2.00965388 -6.54291078
## Porphyromonas_somerae -3.7581861 -4.82767894 0.06913026
## Prevotella_histicola 6.9281522 1.76262211 -6.54291078
## Prevotella_melaninogenica 3.3533260 -0.95647792 -6.54291078
## Prevotella_oris -3.7581861 -4.82767894 -6.54291078
## Kouleothrix_aurantiaca 1.9880170 -4.82767894 -0.85593542
## Hydrogenibacillus_schlegelii -3.7581861 -4.82767894 -6.54291078
## Gemella_asaccharolytica -3.7581861 -4.82767894 -2.63088777
## Gemella_bergeri 4.1923163 3.47260125 2.92617192
## Gemella_haemolysans 5.8343507 4.80779844 5.51013306
## Gemella_morbillorum 4.4046152 4.62254410 4.83221133
## Gemella_sanguinis 7.3785320 6.85793012 6.87624356
## Brochothrix_campestris -3.7581861 -4.82767894 -0.85593542
## Staphylococcus_argenteus 6.2950998 5.90597485 4.69507772
## Staphylococcus_aureus 9.1032851 8.83149706 7.69135419
## Staphylococcus_epidermidis -3.7581861 4.55653071 4.15406690
## Staphylococcus_schweitzeri 2.1898488 3.19881800 2.17656998
## Abiotrophia_defectiva 2.9363759 1.11512044 -0.06440114
## Abiotrophia_sp_HMSC24B09 2.7172466 -4.82767894 0.42875783
## Dolosigranulum_pigrum -3.7581861 -4.82767894 -6.54291078
## Granulicatella_adiacens 2.6303753 2.76064474 2.73471434
## Granulicatella_elegans 6.1222375 4.29372093 4.60615687
## Enterococcus_faecalis -3.7581861 -4.82767894 -6.54291078
## Lactobacillus_rhamnosus -3.7581861 -4.82767894 -1.81552296
## Streptococcus_anginosus 4.8617441 4.70691649 5.16078380
## Streptococcus_australis 3.8580974 6.24226645 5.78350163
## Streptococcus_cristatus 4.1820416 4.54034871 5.16208854
## Streptococcus_gordonii 5.4407899 4.42178599 4.55424163
## Streptococcus_infantis 7.0588283 6.66911715 6.88326881
## Streptococcus_milleri -3.7581861 4.00898565 4.30857933
## Streptococcus_mitis 6.4889975 6.02752441 7.43475094
## Streptococcus_oralis 6.6540449 6.15527207 7.03204808
## Streptococcus_parasanguinis 9.6818365 8.48302452 8.79427738
## Streptococcus_peroris 6.7384901 -4.82767894 1.21798242
## Streptococcus_pneumoniae -3.7581861 -4.82767894 5.08807324
## Streptococcus_pseudopneumoniae -3.7581861 3.53145595 3.77770691
## Streptococcus_salivarius 8.7732725 7.52202208 7.64265185
## Streptococcus_sanguinis 7.8794141 4.92916304 5.30743647
## Streptococcus_sp_A12 3.0091570 3.82334560 4.27444457
## Streptococcus_sp_F0442 5.7942535 4.66731392 5.00521772
## Streptococcus_sp_HMSC034E03 2.0882526 3.50125511 4.66027785
## Streptococcus_sp_HMSC067H01 -3.7581861 2.72613192 4.78294990
## Streptococcus_sp_HMSC071D03 -3.7581861 3.29350431 2.98646497
## Streptococcus_sp_HPH0090 3.7696078 3.34052400 1.34053558
## Streptococcus_sp_M334 2.4382580 -4.82767894 2.44391097
## Streptococcus_vestibularis 5.2748202 3.51801394 3.82785795
## Eubacterium_brachy 2.3443724 5.68184442 5.11147085
## Eubacterium_infirmum -3.7581861 1.83161498 1.98601334
## Eubacterium_nodatum -3.7581861 3.27035582 3.14620712
## Eubacterium_sulci 0.7636024 3.09747858 3.42739395
## Mogibacterium_diversum 6.3019632 4.86896893 4.59967538
## Mogibacterium_pumilum 2.3285886 2.89233901 2.77673233
## Mogibacterium_timidum 0.8061620 0.20275899 1.46778076
## Lachnoanaerobaculum_saburreum 4.2790339 -0.82034575 2.21691482
## Oribacterium_parvum -3.7581861 1.99778110 1.61846425
## Oribacterium_sinus 6.6902096 4.01781030 2.18438125
## Oribacterium_sp_oral_taxon_078 -3.7581861 -4.82767894 1.27229628
## Stomatobaculum_longum 5.4645767 -4.82767894 -6.54291078
## Peptostreptococcus_stomatis -3.7581861 3.02203482 2.47772082
## Bulleidia_extructa 1.6885512 3.87864591 3.08804601
## Solobacterium_moorei 5.0474888 3.05312541 3.45320153
## Limnochorda_pilosa 1.5250176 1.12035605 2.49865585
## Veillonella_atypica 6.7767327 -4.82767894 2.61096506
## Veillonella_dispar 5.3664874 2.00103314 2.29288159
## Veillonella_infantium 4.6734492 -4.82767894 0.76964272
## Veillonella_parvula 4.4885098 -4.82767894 1.70378517
## Veillonella_sp_T11011_6 4.1901991 -4.82767894 1.16774255
## Anaerococcus_nagyae -3.7581861 -4.82767894 -6.54291078
## Finegoldia_magna -3.7581861 -4.82767894 -6.54291078
## Parvimonas_micra 6.0377162 5.52238368 5.44484415
## Parvimonas_sp_oral_taxon_110 2.7785054 -4.82767894 1.38549525
## Parvimonas_sp_oral_taxon_393 2.3643067 2.11254353 2.05346321
## Fusobacterium_nucleatum 4.3383268 1.78570528 2.45942093
## Leptotrichia_wadei 5.0994713 -4.82767894 -6.54291078
## Gemmata_obscuriglobus -3.7581861 2.04858568 1.58596936
## Paludisphaera_borealis -3.7581861 1.17125763 1.57051586
## Achromobacter_xylosoxidans -3.7581861 -4.82767894 -6.54291078
## Cupriavidus_sp 3.2841000 5.99798201 6.13710149
## Sutterella_parvirubra 2.0618968 -4.82767894 0.69845551
## Anaerobiospirillum_thomasii -3.7581861 -4.82767894 0.64851855
## Cardiobacterium_hominis -3.7581861 3.72988815 4.04574219
## Cardiobacterium_valvarum -3.7581861 2.58809804 2.94301378
## Alkalilimnicola_ehrlichii 3.0375196 -4.82767894 -6.54291078
## Escherichia_coli -3.7581861 -4.82767894 -6.54291078
## Thiohalorhabdus_denitrificans 2.7741481 -4.82767894 -6.54291078
## Pseudomonas_aeruginosa 9.1328175 4.99671130 0.71971782
## Acholeplasma_oculi -3.7581861 -0.60817123 -0.43811755
## Candida_albicans -3.7581861 -4.82767894 -6.54291078
## Candida_dubliniensis -3.7581861 -4.82767894 -6.54291078
## Candida_parapsilosis -3.7581861 5.81478921 6.77080162
## Malassezia_restricta -3.7581861 -4.82767894 -6.54291078
## Nakamurella_silvestris -3.7581861 -4.82767894 -0.97456627
## Alloprevotella_tannerae -3.7581861 -4.82767894 -6.54291078
## Prevotella_jejuni 2.4762246 -4.82767894 -6.54291078
## Prevotella_pallens 3.5891136 -4.82767894 -6.54291078
## Prevotella_salivae 3.2412363 -4.82767894 -6.54291078
## Prevotella_sp_oral_taxon_306 -3.7581861 -4.82767894 -6.54291078
## Prevotella_veroralis -3.7581861 -4.82767894 -6.54291078
## Tannerella_sp_oral_taxon_808 -3.7581861 -4.82767894 -6.54291078
## Tannerella_sp_oral_taxon_HOT_286 -3.7581861 -4.82767894 -6.54291078
## Capnocytophaga_gingivalis -3.7581861 2.04651956 -6.54291078
## Bacillus_ginsengihumi -3.7581861 -4.82767894 -6.54291078
## Listeria_floridensis -3.7581861 -4.82767894 -6.54291078
## Agitococcus_lubricus -3.7581861 -4.82767894 -6.54291078
## Lactobacillus_fermentum -3.7581861 -4.82767894 -6.54291078
## Lactobacillus_gasseri -3.7581861 3.57724101 3.22206155
## Sharpea_azabuensis -3.7581861 -0.23255908 -0.97456627
## Streptococcus_mutans 0.6238405 4.80393428 4.97833994
## Oribacterium_asaccharolyticum 3.7935261 -4.82767894 -6.54291078
## Megasphaera_micronuciformis 1.3416803 -4.82767894 -1.92779026
## Neisseria_flavescens 5.8427764 -4.82767894 -6.54291078
## Neisseria_subflava 4.7831141 -4.82767894 -6.54291078
## Stenotrophomonas_maltophilia 4.6449421 4.56197848 2.07864243
## Stenotrophomonas_pavanii -3.7581861 -4.82767894 -6.54291078
## Stenotrophomonas_rhizophila 3.1683909 -4.82767894 -6.54291078
## Bacillus_intestinalis -3.7581861 -4.82767894 -6.54291078
## Listeria_innocua -3.7581861 -4.82767894 -6.54291078
## Listeria_monocytogenes -3.7581861 -4.82767894 -6.54291078
## Staphylococcus_haemolyticus -3.7581861 -4.82767894 -6.54291078
## Streptococcus_sobrinus -3.7581861 2.89322632 3.24841541
## Eggerthia_catenaformis 0.7636024 5.49135606 -6.54291078
## Leptotrichia_sp_oral_taxon_498 -3.7581861 -4.82767894 -6.54291078
## Rickettsia_felis -3.7581861 -4.82767894 -6.54291078
## Haemophilus_parainfluenzae 2.2604071 -4.82767894 -6.54291078
## Candida_orthopsilosis -3.7581861 -4.82767894 -0.10676041
## Nannocystis_exedens -3.7581861 -4.82767894 -6.54291078
## Campylobacter_concisus -3.7581861 -4.82767894 -6.54291078
## Franconibacter_helveticus -3.7581861 -4.82767894 -6.54291078
## Klebsiella_pneumoniae -3.7581861 -4.82767894 -6.54291078
## Salmonella_enterica -3.7581861 -4.82767894 -6.54291078
## Superficieibacter_electus -3.7581861 -4.82767894 -6.54291078
## Pseudomonas_fluorescens -3.7581861 -4.82767894 -6.54291078
## Saccharomyces_cerevisiae -3.7581861 -4.82767894 -6.54291078
## S._cerevisiae x S._kudriavzevii -3.7581861 -4.82767894 -6.54291078
## Saccharomyces_kudriavzevii -3.7581861 -4.82767894 -6.54291078
## Cryptococcus_gattii_VGI -3.7581861 -4.82767894 -6.54291078
## Cryptococcus_gattii_VGII -3.7581861 -4.82767894 -6.54291078
## Cryptococcus_gattii_VGIII -3.7581861 -4.82767894 -6.54291078
## Cryptococcus_neoformans -3.7581861 -4.82767894 -6.54291078
## Listeria_marthii -3.7581861 -4.82767894 -6.54291078
## Erwinia_persicina -3.7581861 -4.82767894 -6.54291078
## Pseudomonas_formosensis -3.7581861 -4.82767894 -6.54291078
## Pseudomonas_putida -3.7581861 -4.82767894 -6.54291078
## CFB_b_lyPMA CFB_b_host_zero CFB_b_control
## Actinobaculum_sp_oral_taxon_183 -3.9033602 2.8959689 -0.4799569
## Actinomyces_georgiae -3.9033602 2.4550184 -0.4799569
## Actinomyces_graevenitzii 4.4449409 4.6268248 -0.4799569
## Actinomyces_hongkongensis -3.9033602 1.8839634 -0.4799569
## Actinomyces_johnsonii 3.2370929 4.5121215 -0.4799569
## Actinomyces_massiliensis -3.9033602 5.5832198 -0.4799569
## Actinomyces_meyeri 0.3451351 2.6144461 -0.4799569
## Actinomyces_naeslundii -3.9033602 4.0593679 -0.4799569
## Actinomyces_odontolyticus 7.1391936 7.5654749 3.3701907
## Actinomyces_oris 5.3621311 7.2444401 -0.4799569
## Actinomyces_sp_HMSC035G02 6.5460788 6.8110470 -0.4799569
## Actinomyces_sp_HPA0247 6.5394822 7.8955608 4.3952404
## Actinomyces_sp_ICM47 5.6243424 6.0554763 -0.4799569
## Actinomyces_sp_S6_Spd3 4.8814144 4.8553424 -0.4799569
## Actinomyces_sp_oral_taxon_170 -3.9033602 2.8135206 -0.4799569
## Actinomyces_sp_oral_taxon_180 1.4196498 4.1784625 -0.4799569
## Actinomyces_sp_oral_taxon_181 5.4733418 5.8729849 -0.4799569
## Actinomyces_sp_oral_taxon_414 -3.9033602 1.8204765 -0.4799569
## Actinomyces_sp_oral_taxon_448 2.2235090 4.9947681 -0.4799569
## Actinomyces_sp_oral_taxon_897 -3.9033602 4.8424043 -0.4799569
## Actinomyces_viscosus -3.9033602 2.2563778 -0.4799569
## Aeriscardovia_aeriphila 0.9169214 1.4310528 -0.4799569
## Alloscardovia_omnicolens -3.9033602 3.1551144 -0.4799569
## Bifidobacterium_dentium 0.7216127 3.8527356 -0.4799569
## Bifidobacterium_longum -3.9033602 3.2386004 -0.4799569
## Scardovia_wiggsiae 4.6210072 4.3855917 -0.4799569
## Corynebacterium_accolens -3.9033602 -5.9284148 -0.4799569
## Corynebacterium_atypicum -3.9033602 -1.8175410 -0.4799569
## Corynebacterium_durum -3.9033602 2.1490323 -0.4799569
## Corynebacterium_matruchotii 0.9329218 3.7826402 -0.4799569
## Corynebacterium_pseudodiphtheriticum -3.9033602 -5.9284148 -0.4799569
## Corynebacterium_pseudogenitalium -3.9033602 -5.9284148 -0.4799569
## Corynebacterium_tuberculostearicum -3.9033602 -5.9284148 -0.4799569
## Rothia_aeria 4.6340277 3.9589434 -0.4799569
## Rothia_dentocariosa 6.1291361 5.4268154 -0.4799569
## Rothia_mucilaginosa 8.7386939 8.7206138 7.0150293
## Cutibacterium_acnes -3.9033602 2.3686303 -0.4799569
## Cutibacterium_granulosum -3.9033602 -5.9284148 -0.4799569
## Propionibacterium_humerusii -3.9033602 -5.9284148 -0.4799569
## Propionibacterium_namnetense -3.9033602 -5.9284148 -0.4799569
## Propionibacterium_acidifaciens -3.9033602 2.7967677 -0.4799569
## Pseudopropionibacterium_propionicum 3.1006140 4.3334812 -0.4799569
## Atopobium_deltae -3.9033602 -5.9284148 -0.4799569
## Atopobium_parvulum 5.8298727 5.7361496 -0.4799569
## Atopobium_rimae 4.7913095 4.7446021 -0.4799569
## Olsenella_profusa 3.8046014 3.0467094 -0.4799569
## Olsenella_scatoligenes 3.5977220 2.8585001 -0.4799569
## Olsenella_uli 4.9754159 4.0257183 -0.4799569
## Collinsella_aerofaciens 3.2933264 2.4400463 -0.4799569
## Collinsella_intestinalis 1.7699631 1.4072192 -0.4799569
## Collinsella_stercoris 1.8004223 2.2101499 -0.4799569
## Enorma_massiliensis 0.2397746 1.1674784 -0.4799569
## [Collinsella]_massiliensis 2.3562213 2.6629578 -0.4799569
## Asaccharobacter_celatus -3.9033602 0.4276928 -0.4799569
## Denitrobacterium_detoxificans -3.9033602 0.3040332 -0.4799569
## Enterorhabdus_caecimuris -3.9033602 -0.2346827 -0.4799569
## Slackia_exigua 3.6634683 4.0331058 -0.4799569
## Slackia_isoflavoniconvertens 1.7314295 2.6489323 -0.4799569
## Rubrobacter_radiotolerans -3.9033602 0.2941615 -0.4799569
## Thermoleophilum_album 0.4273732 0.7611845 -0.4799569
## Porphyromonas_endodontalis 4.4618467 4.2888245 -0.4799569
## Porphyromonas_somerae 2.8059442 2.7508972 -0.4799569
## Prevotella_histicola 4.3896890 2.1680981 6.5176391
## Prevotella_melaninogenica 3.7937612 1.9329270 5.8023098
## Prevotella_oris -3.9033602 -5.9284148 -0.4799569
## Kouleothrix_aurantiaca -3.9033602 -0.1983150 -0.4799569
## Hydrogenibacillus_schlegelii -3.9033602 -0.6605567 -0.4799569
## Gemella_asaccharolytica -3.9033602 -5.9284148 -0.4799569
## Gemella_bergeri 3.2394672 3.6151783 -0.4799569
## Gemella_haemolysans 5.5525113 4.9051677 -0.4799569
## Gemella_morbillorum 4.9709479 4.2147194 -0.4799569
## Gemella_sanguinis 7.1980872 6.5197841 5.8390112
## Brochothrix_campestris -3.9033602 -5.9284148 -0.4799569
## Staphylococcus_argenteus 5.6299329 3.8819701 -0.4799569
## Staphylococcus_aureus 8.6139402 7.1604538 3.1035620
## Staphylococcus_epidermidis 4.0943030 3.8935915 -0.4799569
## Staphylococcus_schweitzeri 3.1424164 1.1173618 -0.4799569
## Abiotrophia_defectiva -3.9033602 0.6929908 -0.4799569
## Abiotrophia_sp_HMSC24B09 -3.9033602 0.1260245 -0.4799569
## Dolosigranulum_pigrum -3.9033602 -5.9284148 -0.4799569
## Granulicatella_adiacens 3.3199355 2.8546749 -0.4799569
## Granulicatella_elegans 5.0771896 4.2332745 -0.4799569
## Enterococcus_faecalis -3.9033602 -5.9284148 -0.4799569
## Lactobacillus_rhamnosus -3.9033602 -5.9284148 -0.4799569
## Streptococcus_anginosus 5.1207711 4.6224377 -0.4799569
## Streptococcus_australis 6.2719849 5.7912240 -0.4799569
## Streptococcus_cristatus 5.9438745 3.6530062 -0.4799569
## Streptococcus_gordonii 5.5496911 3.9357080 -0.4799569
## Streptococcus_infantis 7.7191728 6.8084890 -0.4799569
## Streptococcus_milleri 4.2401573 3.3937352 -0.4799569
## Streptococcus_mitis 8.3532250 5.8006296 6.8537195
## Streptococcus_oralis 8.0546100 5.8880021 -0.4799569
## Streptococcus_parasanguinis 8.9502450 8.2413384 7.7390997
## Streptococcus_peroris 3.1648118 0.4635023 -0.4799569
## Streptococcus_pneumoniae 5.9048822 3.7400464 -0.4799569
## Streptococcus_pseudopneumoniae 4.0697953 2.2773499 -0.4799569
## Streptococcus_salivarius 7.9794171 6.7431890 6.7578213
## Streptococcus_sanguinis 5.6607309 4.5969924 -0.4799569
## Streptococcus_sp_A12 5.0183644 4.1200818 -0.4799569
## Streptococcus_sp_F0442 5.2103592 4.8214559 -0.4799569
## Streptococcus_sp_HMSC034E03 5.3849593 3.2671164 -0.4799569
## Streptococcus_sp_HMSC067H01 5.5995006 3.4613262 -0.4799569
## Streptococcus_sp_HMSC071D03 3.9860990 1.6248718 -0.4799569
## Streptococcus_sp_HPH0090 3.8963932 3.4925106 -0.4799569
## Streptococcus_sp_M334 2.5375864 -5.9284148 -0.4799569
## Streptococcus_vestibularis 4.2331581 2.6408014 -0.4799569
## Eubacterium_brachy 5.4414237 5.1209661 -0.4799569
## Eubacterium_infirmum -3.9033602 0.2179144 -0.4799569
## Eubacterium_nodatum -3.9033602 3.0358971 -0.4799569
## Eubacterium_sulci -3.9033602 2.7964427 -0.4799569
## Mogibacterium_diversum -3.9033602 4.5772005 -0.4799569
## Mogibacterium_pumilum -3.9033602 2.4041341 -0.4799569
## Mogibacterium_timidum -3.9033602 0.4207242 -0.4799569
## Lachnoanaerobaculum_saburreum 5.0042522 -5.9284148 -0.4799569
## Oribacterium_parvum 2.9339727 1.1268980 -0.4799569
## Oribacterium_sinus 4.1989235 3.5880858 -0.4799569
## Oribacterium_sp_oral_taxon_078 -3.9033602 0.2557341 -0.4799569
## Stomatobaculum_longum 3.4368267 -5.9284148 -0.4799569
## Peptostreptococcus_stomatis 1.8773834 1.3200893 -0.4799569
## Bulleidia_extructa 3.3206647 2.9094115 -0.4799569
## Solobacterium_moorei 3.2130340 2.9347765 -0.4799569
## Limnochorda_pilosa -3.9033602 1.9938462 -0.4799569
## Veillonella_atypica 3.3814608 -0.5078798 5.9432900
## Veillonella_dispar 4.0192634 1.4592944 5.1476642
## Veillonella_infantium 1.9255855 -5.9284148 -0.4799569
## Veillonella_parvula 3.6483521 0.1492274 -0.4799569
## Veillonella_sp_T11011_6 -3.9033602 -5.9284148 -0.4799569
## Anaerococcus_nagyae -3.9033602 -5.9284148 -0.4799569
## Finegoldia_magna -3.9033602 -5.9284148 -0.4799569
## Parvimonas_micra 6.2657556 5.1215700 -0.4799569
## Parvimonas_sp_oral_taxon_110 1.7869993 0.5252102 -0.4799569
## Parvimonas_sp_oral_taxon_393 2.7113654 1.4078708 -0.4799569
## Fusobacterium_nucleatum 0.7018100 -5.9284148 -0.4799569
## Leptotrichia_wadei 2.8968099 -5.9284148 -0.4799569
## Gemmata_obscuriglobus -3.9033602 0.2557341 -0.4799569
## Paludisphaera_borealis -3.9033602 1.2904949 -0.4799569
## Achromobacter_xylosoxidans -3.9033602 -5.9284148 -0.4799569
## Cupriavidus_sp 6.7912403 6.3115325 -0.4799569
## Sutterella_parvirubra 0.8061700 0.8695256 -0.4799569
## Anaerobiospirillum_thomasii -3.9033602 1.2630145 -0.4799569
## Cardiobacterium_hominis 4.0973246 4.1418576 -0.4799569
## Cardiobacterium_valvarum 2.9923225 3.2285248 -0.4799569
## Alkalilimnicola_ehrlichii -3.9033602 -0.4190265 -0.4799569
## Escherichia_coli -3.9033602 -5.9284148 -0.4799569
## Thiohalorhabdus_denitrificans -3.9033602 -0.9655702 -0.4799569
## Pseudomonas_aeruginosa 6.8608209 4.4157763 10.0975205
## Acholeplasma_oculi -3.9033602 -1.7695317 -0.4799569
## Candida_albicans -3.9033602 -5.9284148 -0.4799569
## Candida_dubliniensis -3.9033602 -5.9284148 -0.4799569
## Candida_parapsilosis 5.8502343 5.2691559 -0.4799569
## Malassezia_restricta -3.9033602 -5.9284148 -0.4799569
## Nakamurella_silvestris -3.9033602 -1.2936858 -0.4799569
## Alloprevotella_tannerae -3.9033602 -5.9284148 -0.4799569
## Prevotella_jejuni -3.9033602 -5.9284148 -0.4799569
## Prevotella_pallens -3.9033602 -5.9284148 -0.4799569
## Prevotella_salivae -3.9033602 -5.9284148 -0.4799569
## Prevotella_sp_oral_taxon_306 -3.9033602 -5.9284148 -0.4799569
## Prevotella_veroralis -3.9033602 -5.9284148 -0.4799569
## Tannerella_sp_oral_taxon_808 -3.9033602 -5.9284148 -0.4799569
## Tannerella_sp_oral_taxon_HOT_286 3.8303234 2.7227847 -0.4799569
## Capnocytophaga_gingivalis -3.9033602 2.4782936 -0.4799569
## Bacillus_ginsengihumi -3.9033602 -5.9284148 -0.4799569
## Listeria_floridensis -3.9033602 -5.9284148 -0.4799569
## Agitococcus_lubricus -3.9033602 -5.9284148 -0.4799569
## Lactobacillus_fermentum -3.9033602 -5.9284148 -0.4799569
## Lactobacillus_gasseri 3.4178284 2.6751395 -0.4799569
## Sharpea_azabuensis -3.9033602 1.1042094 -0.4799569
## Streptococcus_mutans 4.3991536 4.9858915 -0.4799569
## Oribacterium_asaccharolyticum -3.9033602 -5.9284148 -0.4799569
## Megasphaera_micronuciformis -3.9033602 -5.9284148 -0.4799569
## Neisseria_flavescens -3.9033602 -5.9284148 -0.4799569
## Neisseria_subflava -3.9033602 -5.9284148 -0.4799569
## Stenotrophomonas_maltophilia 4.9914472 4.1301087 6.7315998
## Stenotrophomonas_pavanii -3.9033602 1.6854039 -0.4799569
## Stenotrophomonas_rhizophila -3.9033602 -5.9284148 -0.4799569
## Bacillus_intestinalis -3.9033602 -5.9284148 -0.4799569
## Listeria_innocua -3.9033602 -5.9284148 -0.4799569
## Listeria_monocytogenes -3.9033602 -5.9284148 -0.4799569
## Staphylococcus_haemolyticus -3.9033602 -5.9284148 -0.4799569
## Streptococcus_sobrinus -3.9033602 1.3229302 -0.4799569
## Eggerthia_catenaformis 2.5035198 5.3944754 -0.4799569
## Leptotrichia_sp_oral_taxon_498 -3.9033602 -5.9284148 -0.4799569
## Rickettsia_felis -3.9033602 -5.9284148 -0.4799569
## Haemophilus_parainfluenzae -3.9033602 -5.9284148 4.9182058
## Candida_orthopsilosis -3.9033602 -5.9284148 -0.4799569
## Nannocystis_exedens -3.9033602 -5.9284148 -0.4799569
## Campylobacter_concisus -3.9033602 -5.9284148 -0.4799569
## Franconibacter_helveticus -3.9033602 -5.9284148 -0.4799569
## Klebsiella_pneumoniae -3.9033602 -5.9284148 -0.4799569
## Salmonella_enterica -3.9033602 -5.9284148 -0.4799569
## Superficieibacter_electus -3.9033602 -5.9284148 -0.4799569
## Pseudomonas_fluorescens -3.9033602 -5.9284148 -0.4799569
## Saccharomyces_cerevisiae -3.9033602 -5.9284148 -0.4799569
## S._cerevisiae x S._kudriavzevii -3.9033602 -5.9284148 -0.4799569
## Saccharomyces_kudriavzevii -3.9033602 -5.9284148 -0.4799569
## Cryptococcus_gattii_VGI -3.9033602 -5.9284148 -0.4799569
## Cryptococcus_gattii_VGII -3.9033602 -5.9284148 -0.4799569
## Cryptococcus_gattii_VGIII -3.9033602 -5.9284148 -0.4799569
## Cryptococcus_neoformans -3.9033602 -5.9284148 -0.4799569
## Listeria_marthii -3.9033602 -5.9284148 -0.4799569
## Erwinia_persicina -3.9033602 -5.9284148 -0.4799569
## Pseudomonas_formosensis -3.9033602 -5.9284148 -0.4799569
## Pseudomonas_putida -3.9033602 -5.9284148 -0.4799569
## CFB_b_benzonase CFB_a_qiaamp CFB_a_molysis
## Actinobaculum_sp_oral_taxon_183 -4.683155698 -5.64358913 -6.28044565
## Actinomyces_georgiae -4.683155698 3.02838312 2.86748727
## Actinomyces_graevenitzii 4.964729675 8.90707487 9.72087492
## Actinomyces_hongkongensis -4.683155698 2.44035658 2.65427297
## Actinomyces_johnsonii 3.770671617 4.96002122 6.01146060
## Actinomyces_massiliensis 4.159737633 4.32937785 4.59505113
## Actinomyces_meyeri 2.420166364 2.96307907 2.23093066
## Actinomyces_naeslundii 3.287930055 4.49580024 4.55013409
## Actinomyces_odontolyticus 6.587010071 8.32779206 8.42022858
## Actinomyces_oris 6.849435129 8.92470451 8.47631788
## Actinomyces_sp_HMSC035G02 5.718649579 7.79341563 8.00739147
## Actinomyces_sp_HPA0247 7.084598014 8.40133091 8.29450953
## Actinomyces_sp_ICM47 5.342416735 5.75558516 6.55051943
## Actinomyces_sp_S6_Spd3 4.406146345 6.60675874 7.23077502
## Actinomyces_sp_oral_taxon_170 1.396777497 2.04257318 2.39988628
## Actinomyces_sp_oral_taxon_180 3.429671780 6.49359957 5.23060807
## Actinomyces_sp_oral_taxon_181 5.447467427 6.21899271 6.53757497
## Actinomyces_sp_oral_taxon_414 -4.683155698 -5.64358913 -6.28044565
## Actinomyces_sp_oral_taxon_448 3.906730178 -5.64358913 -6.28044565
## Actinomyces_sp_oral_taxon_897 4.102689640 -5.64358913 -0.57333538
## Actinomyces_viscosus 3.093379330 3.10487450 1.56065412
## Aeriscardovia_aeriphila 0.229499187 3.14057310 3.28378580
## Alloscardovia_omnicolens 1.870777706 -5.64358913 -6.28044565
## Bifidobacterium_dentium 2.229587122 -5.64358913 -6.28044565
## Bifidobacterium_longum 0.334124138 -5.64358913 -6.28044565
## Scardovia_wiggsiae 3.582751636 4.83426207 5.53962623
## Corynebacterium_accolens -4.683155698 -5.64358913 -6.28044565
## Corynebacterium_atypicum -4.683155698 -0.68776207 0.16050089
## Corynebacterium_durum -4.683155698 5.71634832 5.21271579
## Corynebacterium_matruchotii -4.683155698 -5.64358913 -6.28044565
## Corynebacterium_pseudodiphtheriticum -4.683155698 -5.64358913 -6.28044565
## Corynebacterium_pseudogenitalium -4.683155698 -5.64358913 -6.28044565
## Corynebacterium_tuberculostearicum -4.683155698 -5.64358913 -6.28044565
## Rothia_aeria 4.249848893 -5.64358913 4.25191720
## Rothia_dentocariosa 5.170090638 6.81245204 6.47563391
## Rothia_mucilaginosa 7.462747534 7.70202020 8.31931434
## Cutibacterium_acnes -4.683155698 1.70885197 0.33025040
## Cutibacterium_granulosum -4.683155698 -5.64358913 -6.28044565
## Propionibacterium_humerusii -4.683155698 -5.64358913 -6.28044565
## Propionibacterium_namnetense -4.683155698 -5.64358913 -6.28044565
## Propionibacterium_acidifaciens 0.008192184 0.68613178 -6.28044565
## Pseudopropionibacterium_propionicum 3.089597018 6.05484448 5.40091372
## Atopobium_deltae -4.683155698 -5.64358913 -6.28044565
## Atopobium_parvulum 4.884998968 7.50054161 7.66841679
## Atopobium_rimae 4.030426307 5.93459023 6.33146537
## Olsenella_profusa 1.642993775 -5.64358913 -3.02234911
## Olsenella_scatoligenes 1.907145350 2.38356098 2.89592421
## Olsenella_uli 2.618666644 -5.64358913 -6.28044565
## Collinsella_aerofaciens 0.398248667 3.13412047 3.53726613
## Collinsella_intestinalis 1.539420570 1.94016717 1.96388840
## Collinsella_stercoris 1.310805729 2.30972922 2.35114709
## Enorma_massiliensis -4.683155698 1.56056017 2.14463226
## [Collinsella]_massiliensis 1.738466569 3.02443496 3.28966487
## Asaccharobacter_celatus -4.683155698 -0.35028430 0.31670006
## Denitrobacterium_detoxificans -4.683155698 0.54672628 0.59271819
## Enterorhabdus_caecimuris -4.683155698 -0.03411733 0.06519071
## Slackia_exigua 3.013511383 2.12536692 2.01684872
## Slackia_isoflavoniconvertens -4.683155698 2.55697367 2.13582163
## Rubrobacter_radiotolerans -4.683155698 0.08325862 -6.28044565
## Thermoleophilum_album 1.050185578 1.85306331 2.22972293
## Porphyromonas_endodontalis 3.498284997 -5.64358913 -6.28044565
## Porphyromonas_somerae 3.536170395 1.55384623 4.80532110
## Prevotella_histicola 4.183284921 -5.64358913 -6.28044565
## Prevotella_melaninogenica 4.583659520 4.19951128 6.04278762
## Prevotella_oris -4.683155698 -5.64358913 -6.28044565
## Kouleothrix_aurantiaca -4.683155698 0.77965784 1.06814188
## Hydrogenibacillus_schlegelii -4.683155698 0.27798929 -0.32202095
## Gemella_asaccharolytica -4.683155698 -5.64358913 -6.28044565
## Gemella_bergeri 2.275292695 4.51392030 4.47240192
## Gemella_haemolysans 5.131391345 6.75547709 6.63704132
## Gemella_morbillorum 4.185961167 4.79659645 5.47805000
## Gemella_sanguinis 7.011015745 7.57569586 7.69917158
## Brochothrix_campestris -4.683155698 0.70554987 0.51749477
## Staphylococcus_argenteus 3.595780304 6.51845326 5.73769976
## Staphylococcus_aureus 6.608524412 9.59500615 8.90661207
## Staphylococcus_epidermidis 3.567464384 -5.64358913 -6.28044565
## Staphylococcus_schweitzeri -4.683155698 3.82957694 2.96216829
## Abiotrophia_defectiva -4.683155698 3.91902653 4.40504668
## Abiotrophia_sp_HMSC24B09 -4.683155698 3.98256265 4.39465363
## Dolosigranulum_pigrum -4.683155698 -5.64358913 -6.28044565
## Granulicatella_adiacens 2.527662755 4.22882047 4.15725197
## Granulicatella_elegans 4.046564892 5.84562749 6.04292547
## Enterococcus_faecalis -4.683155698 2.92106001 -6.28044565
## Lactobacillus_rhamnosus -4.683155698 2.69662819 0.75482295
## Streptococcus_anginosus 4.311885276 6.77282548 6.58303042
## Streptococcus_australis 5.685542767 4.74577540 5.07575583
## Streptococcus_cristatus 4.119216435 -5.64358913 -6.28044565
## Streptococcus_gordonii 4.281284135 5.92402337 5.92496678
## Streptococcus_infantis 6.610356748 6.83387614 7.06851611
## Streptococcus_milleri 4.020019011 -5.64358913 -6.28044565
## Streptococcus_mitis 6.880624465 6.68865351 7.20109175
## Streptococcus_oralis 6.588474974 6.21165573 6.52942371
## Streptococcus_parasanguinis 7.875192227 9.75552366 10.03920311
## Streptococcus_peroris -4.683155698 3.57808676 5.15576075
## Streptococcus_pneumoniae 4.431994487 -5.64358913 4.61908607
## Streptococcus_pseudopneumoniae 3.558020452 2.11003442 3.19164342
## Streptococcus_salivarius 6.962165515 9.28352990 9.52103169
## Streptococcus_sanguinis 4.723491315 6.32880972 6.30686772
## Streptococcus_sp_A12 4.054778160 5.41258846 5.58014631
## Streptococcus_sp_F0442 4.406372053 6.51569585 6.13401015
## Streptococcus_sp_HMSC034E03 4.399351302 3.66396870 4.68055438
## Streptococcus_sp_HMSC067H01 4.240835046 1.52653042 2.67164200
## Streptococcus_sp_HMSC071D03 -4.683155698 0.92589229 1.16146108
## Streptococcus_sp_HPH0090 1.613953621 4.85446759 5.00984864
## Streptococcus_sp_M334 -4.683155698 -5.64358913 -6.28044565
## Streptococcus_vestibularis 3.452484205 4.05918884 3.35457405
## Eubacterium_brachy 4.808446178 3.10804358 2.17763428
## Eubacterium_infirmum -0.420475821 3.38486959 3.27525591
## Eubacterium_nodatum 3.640938063 -5.64358913 -6.28044565
## Eubacterium_sulci 2.688962330 7.60959372 7.63720896
## Mogibacterium_diversum 4.496209869 7.28056719 6.73164964
## Mogibacterium_pumilum 1.072586515 3.19670154 2.63216232
## Mogibacterium_timidum -0.811954688 -5.64358913 -6.28044565
## Lachnoanaerobaculum_saburreum 2.882119583 4.68559091 5.65951723
## Oribacterium_parvum 4.448466089 -5.64358913 -6.28044565
## Oribacterium_sinus 5.454810915 4.87629954 4.11996129
## Oribacterium_sp_oral_taxon_078 -4.683155698 -0.60016401 -0.29148423
## Stomatobaculum_longum 2.769826631 2.57222867 6.21919546
## Peptostreptococcus_stomatis 2.393498117 1.30242487 -6.28044565
## Bulleidia_extructa 3.095892946 -1.32610101 -0.51525454
## Solobacterium_moorei 3.976231259 5.08119693 5.69659112
## Limnochorda_pilosa 2.186897713 3.82247815 3.39092068
## Veillonella_atypica 4.116505998 3.85889834 6.35960182
## Veillonella_dispar 3.656822874 3.53587958 5.72546118
## Veillonella_infantium 1.795353944 2.80167833 4.60140562
## Veillonella_parvula 3.530226039 1.22957471 2.42505117
## Veillonella_sp_T11011_6 2.241456698 1.97121624 3.53666669
## Anaerococcus_nagyae -4.683155698 -5.64358913 -6.28044565
## Finegoldia_magna -4.683155698 -5.64358913 -6.28044565
## Parvimonas_micra 5.435725452 4.65598637 3.64919686
## Parvimonas_sp_oral_taxon_110 -0.352422358 -0.21863911 -6.28044565
## Parvimonas_sp_oral_taxon_393 1.827102642 0.24251491 0.17160331
## Fusobacterium_nucleatum 3.530497005 0.03658348 4.29445459
## Leptotrichia_wadei -4.683155698 -5.64358913 0.66171106
## Gemmata_obscuriglobus -4.683155698 -5.64358913 1.69443125
## Paludisphaera_borealis -4.683155698 1.82720465 1.42526718
## Achromobacter_xylosoxidans -4.683155698 -5.64358913 -6.28044565
## Cupriavidus_sp 5.032012345 5.00819645 5.75964325
## Sutterella_parvirubra 1.387582030 -0.06764002 0.35681239
## Anaerobiospirillum_thomasii 1.394486545 1.95280318 1.82667182
## Cardiobacterium_hominis 2.903647837 -5.64358913 -2.31015373
## Cardiobacterium_valvarum 0.997016911 -5.64358913 -6.28044565
## Alkalilimnicola_ehrlichii 0.192041625 0.74497228 -6.28044565
## Escherichia_coli -4.683155698 6.23172692 3.96535420
## Thiohalorhabdus_denitrificans 1.050185578 0.22287893 -6.28044565
## Pseudomonas_aeruginosa 7.307735365 5.34266923 2.16696865
## Acholeplasma_oculi -4.683155698 0.88290573 0.93992819
## Candida_albicans -4.683155698 -5.64358913 -6.28044565
## Candida_dubliniensis -4.683155698 -5.64358913 0.69403327
## Candida_parapsilosis 7.191269055 -5.64358913 -6.28044565
## Malassezia_restricta -4.683155698 -5.64358913 -6.28044565
## Nakamurella_silvestris -4.683155698 0.67176888 0.64121254
## Alloprevotella_tannerae -4.683155698 -5.64358913 -6.28044565
## Prevotella_jejuni -4.683155698 -5.64358913 2.33514387
## Prevotella_pallens 1.877874967 1.41086053 5.29138060
## Prevotella_salivae -4.683155698 2.57654483 3.89050852
## Prevotella_sp_oral_taxon_306 -4.683155698 -5.64358913 -6.28044565
## Prevotella_veroralis -4.683155698 -5.64358913 -6.28044565
## Tannerella_sp_oral_taxon_808 -4.683155698 -5.64358913 -6.28044565
## Tannerella_sp_oral_taxon_HOT_286 2.575256452 1.63917205 2.33078419
## Capnocytophaga_gingivalis -4.683155698 3.76067194 1.09104365
## Bacillus_ginsengihumi -4.683155698 -5.64358913 -6.28044565
## Listeria_floridensis -4.683155698 -5.64358913 -0.73918210
## Agitococcus_lubricus -4.683155698 0.38468939 -6.28044565
## Lactobacillus_fermentum -4.683155698 -5.64358913 -6.28044565
## Lactobacillus_gasseri 2.595473244 -5.64358913 -6.28044565
## Sharpea_azabuensis -4.683155698 -5.64358913 -1.74784615
## Streptococcus_mutans 4.443476924 5.81377077 6.53818215
## Oribacterium_asaccharolyticum 0.692122709 2.51091105 1.10602520
## Megasphaera_micronuciformis -1.156795174 4.46565164 5.87123417
## Neisseria_flavescens 1.040429404 -5.64358913 3.24980195
## Neisseria_subflava 1.870777706 -5.64358913 1.96178425
## Stenotrophomonas_maltophilia 6.946538955 4.83164039 4.08375249
## Stenotrophomonas_pavanii 3.310801849 1.94473455 -6.28044565
## Stenotrophomonas_rhizophila 4.925893677 3.15833178 -6.28044565
## Bacillus_intestinalis -4.683155698 -5.64358913 -6.28044565
## Listeria_innocua -4.683155698 -5.64358913 -6.28044565
## Listeria_monocytogenes -4.683155698 -5.64358913 -6.28044565
## Staphylococcus_haemolyticus -4.683155698 -5.64358913 -6.28044565
## Streptococcus_sobrinus -4.683155698 4.49176383 3.97154858
## Eggerthia_catenaformis 5.092896131 -5.64358913 -6.28044565
## Leptotrichia_sp_oral_taxon_498 -4.683155698 -5.64358913 -6.28044565
## Rickettsia_felis -4.683155698 -5.64358913 -6.28044565
## Haemophilus_parainfluenzae 2.002705249 -0.99919823 1.43289224
## Candida_orthopsilosis -4.683155698 -5.64358913 -6.28044565
## Nannocystis_exedens -4.683155698 -5.64358913 -6.28044565
## Campylobacter_concisus -4.683155698 -5.64358913 -0.21666044
## Franconibacter_helveticus -4.683155698 -5.64358913 -6.28044565
## Klebsiella_pneumoniae -4.683155698 -5.64358913 -6.28044565
## Salmonella_enterica -4.683155698 -5.64358913 -6.28044565
## Superficieibacter_electus -4.683155698 -5.64358913 -6.28044565
## Pseudomonas_fluorescens -4.683155698 -5.64358913 -6.28044565
## Saccharomyces_cerevisiae -4.683155698 -5.64358913 -6.28044565
## S._cerevisiae x S._kudriavzevii -4.683155698 -5.64358913 -6.28044565
## Saccharomyces_kudriavzevii -4.683155698 -5.64358913 -6.28044565
## Cryptococcus_gattii_VGI -4.683155698 -5.64358913 -6.28044565
## Cryptococcus_gattii_VGII -4.683155698 -5.64358913 -6.28044565
## Cryptococcus_gattii_VGIII -4.683155698 -5.64358913 -6.28044565
## Cryptococcus_neoformans -4.683155698 -5.64358913 -6.28044565
## Listeria_marthii -4.683155698 -5.64358913 -6.28044565
## Erwinia_persicina -4.683155698 -5.64358913 -6.28044565
## Pseudomonas_formosensis -4.683155698 -5.64358913 -6.28044565
## Pseudomonas_putida -4.683155698 -5.64358913 -6.28044565
## CFB_a_lyPMA CFB_a_host_zero CFB_a_control
## Actinobaculum_sp_oral_taxon_183 -2.559324 -6.333987856 -1.180315
## Actinomyces_georgiae -2.559324 2.484346428 -1.180315
## Actinomyces_graevenitzii 6.466974 8.843195167 7.507970
## Actinomyces_hongkongensis -2.559324 2.663406790 -1.180315
## Actinomyces_johnsonii -2.559324 5.134943923 -1.180315
## Actinomyces_massiliensis -2.559324 4.455887767 -1.180315
## Actinomyces_meyeri -2.559324 2.237314661 -1.180315
## Actinomyces_naeslundii -2.559324 4.655921313 -1.180315
## Actinomyces_odontolyticus 7.095382 8.427585417 6.174047
## Actinomyces_oris 4.154847 8.798716150 4.166792
## Actinomyces_sp_HMSC035G02 6.384966 7.856834398 5.858468
## Actinomyces_sp_HPA0247 7.199543 8.467965420 5.796966
## Actinomyces_sp_ICM47 4.672687 5.683916172 5.301262
## Actinomyces_sp_S6_Spd3 5.686061 6.520924742 -1.180315
## Actinomyces_sp_oral_taxon_170 -2.559324 2.443413431 -1.180315
## Actinomyces_sp_oral_taxon_180 -2.559324 5.167391205 -1.180315
## Actinomyces_sp_oral_taxon_181 4.573972 6.300872466 -1.180315
## Actinomyces_sp_oral_taxon_414 -2.559324 -6.333987856 -1.180315
## Actinomyces_sp_oral_taxon_448 -2.559324 -6.333987856 -1.180315
## Actinomyces_sp_oral_taxon_897 -2.559324 -6.333987856 -1.180315
## Actinomyces_viscosus -2.559324 0.979232531 3.384033
## Aeriscardovia_aeriphila 1.771410 3.106193589 -1.180315
## Alloscardovia_omnicolens -2.559324 -6.333987856 -1.180315
## Bifidobacterium_dentium -2.559324 -6.333987856 -1.180315
## Bifidobacterium_longum -2.559324 -6.333987856 -1.180315
## Scardovia_wiggsiae 4.426318 4.631378842 -1.180315
## Corynebacterium_accolens -2.559324 -6.333987856 -1.180315
## Corynebacterium_atypicum -2.559324 -0.357636947 -1.180315
## Corynebacterium_durum 4.113974 5.411627449 -1.180315
## Corynebacterium_matruchotii -2.559324 -6.333987856 -1.180315
## Corynebacterium_pseudodiphtheriticum -2.559324 -6.333987856 -1.180315
## Corynebacterium_pseudogenitalium -2.559324 -6.333987856 -1.180315
## Corynebacterium_tuberculostearicum -2.559324 -6.333987856 -1.180315
## Rothia_aeria -2.559324 2.282869658 -1.180315
## Rothia_dentocariosa 7.313756 6.707950407 -1.180315
## Rothia_mucilaginosa 7.583614 7.678795267 6.083715
## Cutibacterium_acnes -2.559324 1.746249560 -1.180315
## Cutibacterium_granulosum -2.559324 -6.333987856 -1.180315
## Propionibacterium_humerusii -2.559324 -6.333987856 -1.180315
## Propionibacterium_namnetense -2.559324 -6.333987856 -1.180315
## Propionibacterium_acidifaciens -2.559324 0.746880041 -1.180315
## Pseudopropionibacterium_propionicum 5.376979 5.666443427 -1.180315
## Atopobium_deltae -2.559324 -6.333987856 -1.180315
## Atopobium_parvulum 6.394833 7.556578225 6.217246
## Atopobium_rimae 4.417958 6.118261040 -1.180315
## Olsenella_profusa -2.559324 -6.333987856 -1.180315
## Olsenella_scatoligenes -2.559324 2.598884766 -1.180315
## Olsenella_uli -2.559324 -6.333987856 -1.180315
## Collinsella_aerofaciens 2.396503 2.861238878 -1.180315
## Collinsella_intestinalis 1.466028 1.344801142 -1.180315
## Collinsella_stercoris -2.559324 1.580629853 -1.180315
## Enorma_massiliensis -2.559324 1.605527405 -1.180315
## [Collinsella]_massiliensis -2.559324 2.882036332 -1.180315
## Asaccharobacter_celatus -2.559324 -0.047989762 -1.180315
## Denitrobacterium_detoxificans -2.559324 0.027314622 -1.180315
## Enterorhabdus_caecimuris -2.559324 0.167301815 -1.180315
## Slackia_exigua -2.559324 2.095466421 -1.180315
## Slackia_isoflavoniconvertens -2.559324 2.308250824 -1.180315
## Rubrobacter_radiotolerans -2.559324 -6.333987856 -1.180315
## Thermoleophilum_album -2.559324 1.665355097 -1.180315
## Porphyromonas_endodontalis -2.559324 -1.497705949 -1.180315
## Porphyromonas_somerae 5.592010 4.573398294 -1.180315
## Prevotella_histicola -2.559324 -1.371143226 -1.180315
## Prevotella_melaninogenica 7.360677 5.877201676 8.538769
## Prevotella_oris -2.559324 -6.333987856 -1.180315
## Kouleothrix_aurantiaca -2.559324 1.161554088 -1.180315
## Hydrogenibacillus_schlegelii -2.559324 0.773437618 -1.180315
## Gemella_asaccharolytica -2.559324 -6.333987856 -1.180315
## Gemella_bergeri -2.559324 4.047502497 -1.180315
## Gemella_haemolysans 5.658654 6.435376669 -1.180315
## Gemella_morbillorum 4.413283 4.972515964 -1.180315
## Gemella_sanguinis 6.781518 7.342466361 5.961721
## Brochothrix_campestris -2.559324 0.129041601 -1.180315
## Staphylococcus_argenteus 6.125077 6.042915580 -1.180315
## Staphylococcus_aureus 9.116290 9.269774025 7.180224
## Staphylococcus_epidermidis -2.559324 -6.333987856 -1.180315
## Staphylococcus_schweitzeri -2.559324 3.223694039 -1.180315
## Abiotrophia_defectiva -2.559324 3.837540129 -1.180315
## Abiotrophia_sp_HMSC24B09 -2.559324 3.904792667 -1.180315
## Dolosigranulum_pigrum -2.559324 -6.333987856 -1.180315
## Granulicatella_adiacens 2.891715 3.998127793 -1.180315
## Granulicatella_elegans 5.441696 5.723979135 -1.180315
## Enterococcus_faecalis -2.559324 1.488857434 -1.180315
## Lactobacillus_rhamnosus -2.559324 2.648070787 -1.180315
## Streptococcus_anginosus 4.631352 4.946601939 -1.180315
## Streptococcus_australis 4.706106 4.744733462 -1.180315
## Streptococcus_cristatus -2.559324 -6.333987856 -1.180315
## Streptococcus_gordonii 6.304575 5.607246467 -1.180315
## Streptococcus_infantis 7.101901 6.966541790 3.444658
## Streptococcus_milleri -2.559324 -6.333987856 -1.180315
## Streptococcus_mitis 7.921114 6.740023161 6.440880
## Streptococcus_oralis 7.097368 6.408943590 5.317967
## Streptococcus_parasanguinis 9.499988 9.561906924 8.698931
## Streptococcus_peroris 4.816558 4.325199052 -1.180315
## Streptococcus_pneumoniae -2.559324 4.167374197 -1.180315
## Streptococcus_pseudopneumoniae -2.559324 3.228979277 -1.180315
## Streptococcus_salivarius 8.495289 9.162734708 8.157539
## Streptococcus_sanguinis 6.887353 6.463365344 5.509284
## Streptococcus_sp_A12 5.762827 5.206348475 -1.180315
## Streptococcus_sp_F0442 6.403196 6.380726029 -1.180315
## Streptococcus_sp_HMSC034E03 4.520703 4.013864954 -1.180315
## Streptococcus_sp_HMSC067H01 -2.559324 1.879122842 -1.180315
## Streptococcus_sp_HMSC071D03 -2.559324 0.414771691 -1.180315
## Streptococcus_sp_HPH0090 4.652971 4.967994331 -1.180315
## Streptococcus_sp_M334 -2.559324 -6.333987856 -1.180315
## Streptococcus_vestibularis 3.552144 3.520572023 4.166792
## Eubacterium_brachy -2.559324 2.385656263 -1.180315
## Eubacterium_infirmum -2.559324 2.878649875 -1.180315
## Eubacterium_nodatum -2.559324 -6.333987856 -1.180315
## Eubacterium_sulci 5.841336 7.257284802 5.726440
## Mogibacterium_diversum -2.559324 6.789496892 4.759856
## Mogibacterium_pumilum -2.559324 2.724249738 -1.180315
## Mogibacterium_timidum -2.559324 -6.333987856 -1.180315
## Lachnoanaerobaculum_saburreum 3.612377 4.574057683 -1.180315
## Oribacterium_parvum -2.559324 -6.333987856 -1.180315
## Oribacterium_sinus 4.585083 4.102302053 -1.180315
## Oribacterium_sp_oral_taxon_078 -2.559324 0.606234613 -1.180315
## Stomatobaculum_longum 6.520908 3.440244861 5.956168
## Peptostreptococcus_stomatis -2.559324 0.335510234 -1.180315
## Bulleidia_extructa -2.559324 -0.603888073 -1.180315
## Solobacterium_moorei 5.304328 4.688763925 -1.180315
## Limnochorda_pilosa -2.559324 3.366220045 -1.180315
## Veillonella_atypica 3.343310 4.199281001 6.963493
## Veillonella_dispar 4.674132 3.587683367 6.245639
## Veillonella_infantium 3.356878 2.443567597 5.854953
## Veillonella_parvula -2.559324 1.251800966 3.732340
## Veillonella_sp_T11011_6 3.005197 1.119574016 5.538698
## Anaerococcus_nagyae -2.559324 -6.333987856 -1.180315
## Finegoldia_magna -2.559324 -6.333987856 -1.180315
## Parvimonas_micra -2.559324 3.843754526 -1.180315
## Parvimonas_sp_oral_taxon_110 -2.559324 -0.610402754 -1.180315
## Parvimonas_sp_oral_taxon_393 -2.559324 0.009892578 -1.180315
## Fusobacterium_nucleatum -2.559324 -6.333987856 -1.180315
## Leptotrichia_wadei -2.559324 -6.333987856 -1.180315
## Gemmata_obscuriglobus -2.559324 0.542276756 -1.180315
## Paludisphaera_borealis -2.559324 1.803115534 -1.180315
## Achromobacter_xylosoxidans -2.559324 -6.333987856 -1.180315
## Cupriavidus_sp 5.777306 5.549410916 -1.180315
## Sutterella_parvirubra -2.559324 1.087787938 -1.180315
## Anaerobiospirillum_thomasii -2.559324 0.857441474 -1.180315
## Cardiobacterium_hominis -2.559324 -6.333987856 -1.180315
## Cardiobacterium_valvarum -2.559324 -6.333987856 -1.180315
## Alkalilimnicola_ehrlichii -2.559324 -0.681498676 -1.180315
## Escherichia_coli 8.713668 6.316722533 9.323382
## Thiohalorhabdus_denitrificans -2.559324 0.514017419 -1.180315
## Pseudomonas_aeruginosa 7.992052 5.411032973 9.195299
## Acholeplasma_oculi -2.559324 0.788072026 -1.180315
## Candida_albicans -2.559324 -6.333987856 -1.180315
## Candida_dubliniensis -2.559324 -6.333987856 -1.180315
## Candida_parapsilosis -2.559324 -6.333987856 -1.180315
## Malassezia_restricta -2.559324 -6.333987856 -1.180315
## Nakamurella_silvestris -2.559324 0.329144840 -1.180315
## Alloprevotella_tannerae -2.559324 -6.333987856 -1.180315
## Prevotella_jejuni 2.331025 3.434481485 -1.180315
## Prevotella_pallens 6.022908 3.719857478 7.055841
## Prevotella_salivae 3.844250 3.140868310 4.818621
## Prevotella_sp_oral_taxon_306 -2.559324 -6.333987856 -1.180315
## Prevotella_veroralis -2.559324 -6.333987856 -1.180315
## Tannerella_sp_oral_taxon_808 -2.559324 -6.333987856 -1.180315
## Tannerella_sp_oral_taxon_HOT_286 4.284426 3.270014912 -1.180315
## Capnocytophaga_gingivalis 6.012926 4.753631973 -1.180315
## Bacillus_ginsengihumi -2.559324 -6.333987856 -1.180315
## Listeria_floridensis -2.559324 -0.664106933 -1.180315
## Agitococcus_lubricus -2.559324 0.130600448 -1.180315
## Lactobacillus_fermentum -2.559324 -6.333987856 -1.180315
## Lactobacillus_gasseri -2.559324 -6.333987856 -1.180315
## Sharpea_azabuensis -2.559324 -1.845351486 -1.180315
## Streptococcus_mutans 5.773466 5.388168831 -1.180315
## Oribacterium_asaccharolyticum -2.559324 -0.068686643 -1.180315
## Megasphaera_micronuciformis 3.756034 4.124763170 5.882733
## Neisseria_flavescens 7.041639 1.829098520 -1.180315
## Neisseria_subflava 4.972229 2.264785322 5.692849
## Stenotrophomonas_maltophilia 5.074530 4.849780551 -1.180315
## Stenotrophomonas_pavanii -2.559324 1.900842424 -1.180315
## Stenotrophomonas_rhizophila 4.116499 2.538218900 -1.180315
## Bacillus_intestinalis -2.559324 -6.333987856 -1.180315
## Listeria_innocua -2.559324 -6.333987856 -1.180315
## Listeria_monocytogenes -2.559324 -6.333987856 -1.180315
## Staphylococcus_haemolyticus -2.559324 -6.333987856 -1.180315
## Streptococcus_sobrinus -2.559324 4.381385012 -1.180315
## Eggerthia_catenaformis -2.559324 -6.333987856 -1.180315
## Leptotrichia_sp_oral_taxon_498 -2.559324 -6.333987856 -1.180315
## Rickettsia_felis -2.559324 -6.333987856 -1.180315
## Haemophilus_parainfluenzae -2.559324 0.202703742 -1.180315
## Candida_orthopsilosis -2.559324 -6.333987856 -1.180315
## Nannocystis_exedens -2.559324 -1.006111687 -1.180315
## Campylobacter_concisus -2.559324 -6.333987856 -1.180315
## Franconibacter_helveticus -2.559324 -6.333987856 -1.180315
## Klebsiella_pneumoniae -2.559324 -6.333987856 -1.180315
## Salmonella_enterica -2.559324 -6.333987856 -1.180315
## Superficieibacter_electus -2.559324 -6.333987856 -1.180315
## Pseudomonas_fluorescens -2.559324 -6.333987856 -1.180315
## Saccharomyces_cerevisiae -2.559324 -6.333987856 -1.180315
## S._cerevisiae x S._kudriavzevii -2.559324 -6.333987856 -1.180315
## Saccharomyces_kudriavzevii -2.559324 -6.333987856 -1.180315
## Cryptococcus_gattii_VGI -2.559324 -6.333987856 -1.180315
## Cryptococcus_gattii_VGII -2.559324 -6.333987856 -1.180315
## Cryptococcus_gattii_VGIII -2.559324 -6.333987856 -1.180315
## Cryptococcus_neoformans -2.559324 -6.333987856 -1.180315
## Listeria_marthii -2.559324 -6.333987856 -1.180315
## Erwinia_persicina -2.559324 -6.333987856 -1.180315
## Pseudomonas_formosensis -2.559324 -6.333987856 -1.180315
## Pseudomonas_putida -2.559324 -6.333987856 -1.180315
## CFB_a_benzonase BAL_079_f_qiaamp
## Actinobaculum_sp_oral_taxon_183 -3.9116131 -0.2166717
## Actinomyces_georgiae -3.9116131 -0.2166717
## Actinomyces_graevenitzii 8.5540160 -0.2166717
## Actinomyces_hongkongensis -3.9116131 -0.2166717
## Actinomyces_johnsonii 3.6634586 -0.2166717
## Actinomyces_massiliensis 1.1122674 -0.2166717
## Actinomyces_meyeri 1.6567314 -0.2166717
## Actinomyces_naeslundii -3.9116131 -0.2166717
## Actinomyces_odontolyticus 7.5946502 6.8800497
## Actinomyces_oris 8.4745912 -0.2166717
## Actinomyces_sp_HMSC035G02 7.1559623 -0.2166717
## Actinomyces_sp_HPA0247 7.6101631 7.6149456
## Actinomyces_sp_ICM47 5.7648484 -0.2166717
## Actinomyces_sp_S6_Spd3 6.3968728 -0.2166717
## Actinomyces_sp_oral_taxon_170 -3.9116131 -0.2166717
## Actinomyces_sp_oral_taxon_180 4.1027227 -0.2166717
## Actinomyces_sp_oral_taxon_181 5.4282632 -0.2166717
## Actinomyces_sp_oral_taxon_414 -3.9116131 -0.2166717
## Actinomyces_sp_oral_taxon_448 -3.9116131 -0.2166717
## Actinomyces_sp_oral_taxon_897 -3.9116131 -0.2166717
## Actinomyces_viscosus -3.9116131 -0.2166717
## Aeriscardovia_aeriphila 1.7231765 -0.2166717
## Alloscardovia_omnicolens -3.9116131 -0.2166717
## Bifidobacterium_dentium -3.9116131 -0.2166717
## Bifidobacterium_longum -3.9116131 -0.2166717
## Scardovia_wiggsiae 3.3503140 -0.2166717
## Corynebacterium_accolens -3.9116131 -0.2166717
## Corynebacterium_atypicum -3.9116131 -0.2166717
## Corynebacterium_durum 4.2784640 -0.2166717
## Corynebacterium_matruchotii -3.9116131 -0.2166717
## Corynebacterium_pseudodiphtheriticum -3.9116131 -0.2166717
## Corynebacterium_pseudogenitalium -3.9116131 -0.2166717
## Corynebacterium_tuberculostearicum -3.9116131 -0.2166717
## Rothia_aeria -3.9116131 -0.2166717
## Rothia_dentocariosa 5.9404759 -0.2166717
## Rothia_mucilaginosa 6.9166689 7.8825789
## Cutibacterium_acnes -3.9116131 -0.2166717
## Cutibacterium_granulosum -3.9116131 -0.2166717
## Propionibacterium_humerusii -3.9116131 -0.2166717
## Propionibacterium_namnetense -3.9116131 -0.2166717
## Propionibacterium_acidifaciens -3.9116131 -0.2166717
## Pseudopropionibacterium_propionicum 4.5637159 -0.2166717
## Atopobium_deltae -3.9116131 -0.2166717
## Atopobium_parvulum 7.3430338 -0.2166717
## Atopobium_rimae 5.7236682 -0.2166717
## Olsenella_profusa -3.9116131 -0.2166717
## Olsenella_scatoligenes 1.1943324 -0.2166717
## Olsenella_uli -3.9116131 -0.2166717
## Collinsella_aerofaciens 1.7988139 -0.2166717
## Collinsella_intestinalis 0.7797348 -0.2166717
## Collinsella_stercoris 1.3867043 -0.2166717
## Enorma_massiliensis 0.8924080 -0.2166717
## [Collinsella]_massiliensis 2.2989870 -0.2166717
## Asaccharobacter_celatus -3.9116131 -0.2166717
## Denitrobacterium_detoxificans -3.9116131 -0.2166717
## Enterorhabdus_caecimuris -3.9116131 -0.2166717
## Slackia_exigua -3.9116131 -0.2166717
## Slackia_isoflavoniconvertens 1.1253395 -0.2166717
## Rubrobacter_radiotolerans -3.9116131 -0.2166717
## Thermoleophilum_album 1.5221089 -0.2166717
## Porphyromonas_endodontalis -3.9116131 -0.2166717
## Porphyromonas_somerae 4.2828924 -0.2166717
## Prevotella_histicola -3.9116131 -0.2166717
## Prevotella_melaninogenica 7.4436405 -0.2166717
## Prevotella_oris -3.9116131 -0.2166717
## Kouleothrix_aurantiaca 1.8119720 -0.2166717
## Hydrogenibacillus_schlegelii -3.9116131 -0.2166717
## Gemella_asaccharolytica -3.9116131 -0.2166717
## Gemella_bergeri 2.8671718 -0.2166717
## Gemella_haemolysans 6.1826188 -0.2166717
## Gemella_morbillorum 4.3397900 -0.2166717
## Gemella_sanguinis 7.0840159 -0.2166717
## Brochothrix_campestris -3.9116131 -0.2166717
## Staphylococcus_argenteus 4.7727880 -0.2166717
## Staphylococcus_aureus 8.1751128 -0.2166717
## Staphylococcus_epidermidis -3.9116131 -0.2166717
## Staphylococcus_schweitzeri 2.7295691 -0.2166717
## Abiotrophia_defectiva 2.3555875 -0.2166717
## Abiotrophia_sp_HMSC24B09 2.6745586 -0.2166717
## Dolosigranulum_pigrum -3.9116131 -0.2166717
## Granulicatella_adiacens 2.3441370 -0.2166717
## Granulicatella_elegans 5.0749585 -0.2166717
## Enterococcus_faecalis -3.9116131 -0.2166717
## Lactobacillus_rhamnosus -3.9116131 -0.2166717
## Streptococcus_anginosus 4.3465503 -0.2166717
## Streptococcus_australis 4.0759114 -0.2166717
## Streptococcus_cristatus -3.9116131 -0.2166717
## Streptococcus_gordonii 5.2254036 -0.2166717
## Streptococcus_infantis 6.6156984 -0.2166717
## Streptococcus_milleri -3.9116131 -0.2166717
## Streptococcus_mitis 6.7065874 -0.2166717
## Streptococcus_oralis 6.0129508 -0.2166717
## Streptococcus_parasanguinis 9.5273084 3.3386764
## Streptococcus_peroris 4.8745380 -0.2166717
## Streptococcus_pneumoniae -3.9116131 -0.2166717
## Streptococcus_pseudopneumoniae 3.3290366 -0.2166717
## Streptococcus_salivarius 8.8190017 -0.2166717
## Streptococcus_sanguinis 6.3933650 -0.2166717
## Streptococcus_sp_A12 4.7576143 -0.2166717
## Streptococcus_sp_F0442 6.2413483 -0.2166717
## Streptococcus_sp_HMSC034E03 3.4579876 -0.2166717
## Streptococcus_sp_HMSC067H01 2.1262578 -0.2166717
## Streptococcus_sp_HMSC071D03 3.0628658 -0.2166717
## Streptococcus_sp_HPH0090 2.7566152 -0.2166717
## Streptococcus_sp_M334 -3.9116131 -0.2166717
## Streptococcus_vestibularis -3.9116131 -0.2166717
## Eubacterium_brachy -3.9116131 -0.2166717
## Eubacterium_infirmum 2.7256450 -0.2166717
## Eubacterium_nodatum -3.9116131 -0.2166717
## Eubacterium_sulci 7.2532998 -0.2166717
## Mogibacterium_diversum 6.5758204 -0.2166717
## Mogibacterium_pumilum 2.5529752 -0.2166717
## Mogibacterium_timidum -3.9116131 -0.2166717
## Lachnoanaerobaculum_saburreum 5.5698226 -0.2166717
## Oribacterium_parvum -3.9116131 -0.2166717
## Oribacterium_sinus 4.3869265 -0.2166717
## Oribacterium_sp_oral_taxon_078 -3.9116131 -0.2166717
## Stomatobaculum_longum 6.8304199 -0.2166717
## Peptostreptococcus_stomatis -3.9116131 -0.2166717
## Bulleidia_extructa -3.9116131 -0.2166717
## Solobacterium_moorei 5.9680939 -0.2166717
## Limnochorda_pilosa 2.7097926 -0.2166717
## Veillonella_atypica 6.7020754 -0.2166717
## Veillonella_dispar 5.5437106 -0.2166717
## Veillonella_infantium 4.7996655 -0.2166717
## Veillonella_parvula 3.4579876 -0.2166717
## Veillonella_sp_T11011_6 4.4683849 -0.2166717
## Anaerococcus_nagyae -3.9116131 -0.2166717
## Finegoldia_magna -3.9116131 -0.2166717
## Parvimonas_micra 3.2813211 -0.2166717
## Parvimonas_sp_oral_taxon_110 -3.9116131 -0.2166717
## Parvimonas_sp_oral_taxon_393 -3.9116131 -0.2166717
## Fusobacterium_nucleatum 2.0416303 -0.2166717
## Leptotrichia_wadei -3.9116131 -0.2166717
## Gemmata_obscuriglobus -3.9116131 -0.2166717
## Paludisphaera_borealis -3.9116131 -0.2166717
## Achromobacter_xylosoxidans -3.9116131 -0.2166717
## Cupriavidus_sp 3.7922971 10.8114207
## Sutterella_parvirubra 1.7854804 -0.2166717
## Anaerobiospirillum_thomasii -3.9116131 -0.2166717
## Cardiobacterium_hominis -3.9116131 -0.2166717
## Cardiobacterium_valvarum -3.9116131 6.1566481
## Alkalilimnicola_ehrlichii 1.5937185 -0.2166717
## Escherichia_coli 8.0484056 -0.2166717
## Thiohalorhabdus_denitrificans 1.2300505 -0.2166717
## Pseudomonas_aeruginosa 7.5199722 -0.2166717
## Acholeplasma_oculi -3.9116131 -0.2166717
## Candida_albicans -3.9116131 -0.2166717
## Candida_dubliniensis -3.9116131 -0.2166717
## Candida_parapsilosis -3.9116131 -0.2166717
## Malassezia_restricta -3.9116131 -0.2166717
## Nakamurella_silvestris -3.9116131 -0.2166717
## Alloprevotella_tannerae -3.9116131 -0.2166717
## Prevotella_jejuni 3.3268838 -0.2166717
## Prevotella_pallens 6.6326488 -0.2166717
## Prevotella_salivae 4.7990065 -0.2166717
## Prevotella_sp_oral_taxon_306 -3.9116131 -0.2166717
## Prevotella_veroralis -3.9116131 -0.2166717
## Tannerella_sp_oral_taxon_808 -3.9116131 -0.2166717
## Tannerella_sp_oral_taxon_HOT_286 2.8728440 -0.2166717
## Capnocytophaga_gingivalis 3.2184854 -0.2166717
## Bacillus_ginsengihumi -3.9116131 -0.2166717
## Listeria_floridensis -3.9116131 -0.2166717
## Agitococcus_lubricus -3.9116131 -0.2166717
## Lactobacillus_fermentum -3.9116131 -0.2166717
## Lactobacillus_gasseri -3.9116131 -0.2166717
## Sharpea_azabuensis -3.9116131 -0.2166717
## Streptococcus_mutans 4.6273416 -0.2166717
## Oribacterium_asaccharolyticum -3.9116131 -0.2166717
## Megasphaera_micronuciformis 6.2716630 -0.2166717
## Neisseria_flavescens 5.0962438 -0.2166717
## Neisseria_subflava 4.0990785 -0.2166717
## Stenotrophomonas_maltophilia 5.1462752 -0.2166717
## Stenotrophomonas_pavanii 2.8985294 -0.2166717
## Stenotrophomonas_rhizophila -3.9116131 -0.2166717
## Bacillus_intestinalis -3.9116131 -0.2166717
## Listeria_innocua -3.9116131 -0.2166717
## Listeria_monocytogenes -3.9116131 -0.2166717
## Staphylococcus_haemolyticus -3.9116131 -0.2166717
## Streptococcus_sobrinus 3.7527336 -0.2166717
## Eggerthia_catenaformis -3.9116131 -0.2166717
## Leptotrichia_sp_oral_taxon_498 -3.9116131 -0.2166717
## Rickettsia_felis -3.9116131 -0.2166717
## Haemophilus_parainfluenzae 1.9231977 -0.2166717
## Candida_orthopsilosis -3.9116131 -0.2166717
## Nannocystis_exedens -3.9116131 -0.2166717
## Campylobacter_concisus 0.1314382 -0.2166717
## Franconibacter_helveticus -3.9116131 -0.2166717
## Klebsiella_pneumoniae -3.9116131 -0.2166717
## Salmonella_enterica -3.9116131 -0.2166717
## Superficieibacter_electus -3.9116131 -0.2166717
## Pseudomonas_fluorescens -3.9116131 -0.2166717
## Saccharomyces_cerevisiae -3.9116131 -0.2166717
## S._cerevisiae x S._kudriavzevii -3.9116131 -0.2166717
## Saccharomyces_kudriavzevii -3.9116131 -0.2166717
## Cryptococcus_gattii_VGI -3.9116131 -0.2166717
## Cryptococcus_gattii_VGII -3.9116131 -0.2166717
## Cryptococcus_gattii_VGIII -3.9116131 -0.2166717
## Cryptococcus_neoformans -3.9116131 -0.2166717
## Listeria_marthii -3.9116131 -0.2166717
## Erwinia_persicina -3.9116131 -0.2166717
## Pseudomonas_formosensis -3.9116131 -0.2166717
## Pseudomonas_putida -3.9116131 -0.2166717
## BAL_079_e_benzonase BAL_079_c_molysis
## Actinobaculum_sp_oral_taxon_183 -0.198710 -1.950084
## Actinomyces_georgiae -0.198710 -1.950084
## Actinomyces_graevenitzii -0.198710 -1.950084
## Actinomyces_hongkongensis -0.198710 -1.950084
## Actinomyces_johnsonii -0.198710 -1.950084
## Actinomyces_massiliensis -0.198710 -1.950084
## Actinomyces_meyeri -0.198710 -1.950084
## Actinomyces_naeslundii -0.198710 -1.950084
## Actinomyces_odontolyticus 6.253339 9.057832
## Actinomyces_oris -0.198710 -1.950084
## Actinomyces_sp_HMSC035G02 -0.198710 6.783349
## Actinomyces_sp_HPA0247 7.365529 10.222866
## Actinomyces_sp_ICM47 -0.198710 -1.950084
## Actinomyces_sp_S6_Spd3 -0.198710 -1.950084
## Actinomyces_sp_oral_taxon_170 -0.198710 -1.950084
## Actinomyces_sp_oral_taxon_180 -0.198710 -1.950084
## Actinomyces_sp_oral_taxon_181 -0.198710 3.106161
## Actinomyces_sp_oral_taxon_414 -0.198710 -1.950084
## Actinomyces_sp_oral_taxon_448 -0.198710 -1.950084
## Actinomyces_sp_oral_taxon_897 -0.198710 -1.950084
## Actinomyces_viscosus -0.198710 -1.950084
## Aeriscardovia_aeriphila -0.198710 -1.950084
## Alloscardovia_omnicolens -0.198710 -1.950084
## Bifidobacterium_dentium -0.198710 -1.950084
## Bifidobacterium_longum -0.198710 -1.950084
## Scardovia_wiggsiae -0.198710 -1.950084
## Corynebacterium_accolens -0.198710 -1.950084
## Corynebacterium_atypicum -0.198710 -1.950084
## Corynebacterium_durum -0.198710 -1.950084
## Corynebacterium_matruchotii -0.198710 -1.950084
## Corynebacterium_pseudodiphtheriticum -0.198710 -1.950084
## Corynebacterium_pseudogenitalium -0.198710 -1.950084
## Corynebacterium_tuberculostearicum -0.198710 -1.950084
## Rothia_aeria -0.198710 -1.950084
## Rothia_dentocariosa -0.198710 -1.950084
## Rothia_mucilaginosa 7.448121 8.389882
## Cutibacterium_acnes -0.198710 -1.950084
## Cutibacterium_granulosum -0.198710 -1.950084
## Propionibacterium_humerusii -0.198710 -1.950084
## Propionibacterium_namnetense -0.198710 -1.950084
## Propionibacterium_acidifaciens -0.198710 -1.950084
## Pseudopropionibacterium_propionicum -0.198710 -1.950084
## Atopobium_deltae -0.198710 -1.950084
## Atopobium_parvulum -0.198710 7.648236
## Atopobium_rimae -0.198710 6.238327
## Olsenella_profusa -0.198710 -1.950084
## Olsenella_scatoligenes -0.198710 2.694307
## Olsenella_uli -0.198710 1.787585
## Collinsella_aerofaciens -0.198710 -1.950084
## Collinsella_intestinalis -0.198710 2.057249
## Collinsella_stercoris -0.198710 -1.950084
## Enorma_massiliensis -0.198710 -1.950084
## [Collinsella]_massiliensis -0.198710 1.921117
## Asaccharobacter_celatus -0.198710 -1.950084
## Denitrobacterium_detoxificans -0.198710 2.940265
## Enterorhabdus_caecimuris -0.198710 -1.950084
## Slackia_exigua -0.198710 6.965214
## Slackia_isoflavoniconvertens -0.198710 3.563344
## Rubrobacter_radiotolerans -0.198710 -1.950084
## Thermoleophilum_album -0.198710 2.393721
## Porphyromonas_endodontalis -0.198710 -1.950084
## Porphyromonas_somerae -0.198710 -1.950084
## Prevotella_histicola -0.198710 8.140878
## Prevotella_melaninogenica -0.198710 9.518816
## Prevotella_oris -0.198710 -1.950084
## Kouleothrix_aurantiaca -0.198710 -1.950084
## Hydrogenibacillus_schlegelii -0.198710 -1.950084
## Gemella_asaccharolytica -0.198710 -1.950084
## Gemella_bergeri -0.198710 -1.950084
## Gemella_haemolysans -0.198710 -1.950084
## Gemella_morbillorum -0.198710 -1.950084
## Gemella_sanguinis -0.198710 -1.950084
## Brochothrix_campestris -0.198710 -1.950084
## Staphylococcus_argenteus -0.198710 -1.950084
## Staphylococcus_aureus -0.198710 -1.950084
## Staphylococcus_epidermidis -0.198710 -1.950084
## Staphylococcus_schweitzeri -0.198710 -1.950084
## Abiotrophia_defectiva -0.198710 -1.950084
## Abiotrophia_sp_HMSC24B09 -0.198710 -1.950084
## Dolosigranulum_pigrum -0.198710 -1.950084
## Granulicatella_adiacens -0.198710 -1.950084
## Granulicatella_elegans -0.198710 -1.950084
## Enterococcus_faecalis -0.198710 -1.950084
## Lactobacillus_rhamnosus -0.198710 -1.950084
## Streptococcus_anginosus -0.198710 3.753698
## Streptococcus_australis -0.198710 -1.950084
## Streptococcus_cristatus -0.198710 -1.950084
## Streptococcus_gordonii -0.198710 -1.950084
## Streptococcus_infantis -0.198710 5.648315
## Streptococcus_milleri -0.198710 -1.950084
## Streptococcus_mitis -0.198710 4.857851
## Streptococcus_oralis -0.198710 5.071892
## Streptococcus_parasanguinis 6.463145 7.039360
## Streptococcus_peroris -0.198710 -1.950084
## Streptococcus_pneumoniae -0.198710 -1.950084
## Streptococcus_pseudopneumoniae -0.198710 -1.950084
## Streptococcus_salivarius -0.198710 6.971907
## Streptococcus_sanguinis -0.198710 -1.950084
## Streptococcus_sp_A12 -0.198710 -1.950084
## Streptococcus_sp_F0442 -0.198710 -1.950084
## Streptococcus_sp_HMSC034E03 -0.198710 -1.950084
## Streptococcus_sp_HMSC067H01 -0.198710 -1.950084
## Streptococcus_sp_HMSC071D03 -0.198710 -1.950084
## Streptococcus_sp_HPH0090 -0.198710 -1.950084
## Streptococcus_sp_M334 -0.198710 -1.950084
## Streptococcus_vestibularis -0.198710 -1.950084
## Eubacterium_brachy -0.198710 -1.950084
## Eubacterium_infirmum -0.198710 7.652163
## Eubacterium_nodatum -0.198710 -1.950084
## Eubacterium_sulci -0.198710 -1.950084
## Mogibacterium_diversum -0.198710 5.969999
## Mogibacterium_pumilum -0.198710 -1.950084
## Mogibacterium_timidum -0.198710 -1.950084
## Lachnoanaerobaculum_saburreum -0.198710 8.852731
## Oribacterium_parvum -0.198710 8.963967
## Oribacterium_sinus -0.198710 -1.950084
## Oribacterium_sp_oral_taxon_078 -0.198710 4.416386
## Stomatobaculum_longum -0.198710 8.125759
## Peptostreptococcus_stomatis -0.198710 -1.950084
## Bulleidia_extructa -0.198710 2.406624
## Solobacterium_moorei -0.198710 -1.950084
## Limnochorda_pilosa -0.198710 -1.950084
## Veillonella_atypica -0.198710 8.272111
## Veillonella_dispar -0.198710 6.188188
## Veillonella_infantium -0.198710 3.984810
## Veillonella_parvula -0.198710 -1.950084
## Veillonella_sp_T11011_6 -0.198710 4.953663
## Anaerococcus_nagyae -0.198710 -1.950084
## Finegoldia_magna -0.198710 -1.950084
## Parvimonas_micra -0.198710 -1.950084
## Parvimonas_sp_oral_taxon_110 -0.198710 -1.950084
## Parvimonas_sp_oral_taxon_393 -0.198710 -1.950084
## Fusobacterium_nucleatum -0.198710 8.921489
## Leptotrichia_wadei -0.198710 8.681073
## Gemmata_obscuriglobus -0.198710 -1.950084
## Paludisphaera_borealis -0.198710 -1.950084
## Achromobacter_xylosoxidans -0.198710 -1.950084
## Cupriavidus_sp 11.814439 9.071981
## Sutterella_parvirubra -0.198710 -1.950084
## Anaerobiospirillum_thomasii -0.198710 -1.950084
## Cardiobacterium_hominis -0.198710 -1.950084
## Cardiobacterium_valvarum -0.198710 8.574705
## Alkalilimnicola_ehrlichii -0.198710 -1.950084
## Escherichia_coli -0.198710 -1.950084
## Thiohalorhabdus_denitrificans -0.198710 -1.950084
## Pseudomonas_aeruginosa -0.198710 -1.950084
## Acholeplasma_oculi -0.198710 -1.950084
## Candida_albicans -0.198710 -1.950084
## Candida_dubliniensis -0.198710 -1.950084
## Candida_parapsilosis -0.198710 -1.950084
## Malassezia_restricta -0.198710 -1.950084
## Nakamurella_silvestris -0.198710 -1.950084
## Alloprevotella_tannerae -0.198710 8.636323
## Prevotella_jejuni -0.198710 8.210446
## Prevotella_pallens -0.198710 -1.950084
## Prevotella_salivae -0.198710 6.909137
## Prevotella_sp_oral_taxon_306 -0.198710 -1.950084
## Prevotella_veroralis -0.198710 -1.950084
## Tannerella_sp_oral_taxon_808 -0.198710 9.914392
## Tannerella_sp_oral_taxon_HOT_286 -0.198710 9.371560
## Capnocytophaga_gingivalis -0.198710 7.040233
## Bacillus_ginsengihumi -0.198710 -1.950084
## Listeria_floridensis -0.198710 -1.950084
## Agitococcus_lubricus -0.198710 -1.950084
## Lactobacillus_fermentum -0.198710 -1.950084
## Lactobacillus_gasseri -0.198710 -1.950084
## Sharpea_azabuensis -0.198710 -1.950084
## Streptococcus_mutans -0.198710 -1.950084
## Oribacterium_asaccharolyticum -0.198710 -1.950084
## Megasphaera_micronuciformis -0.198710 6.041508
## Neisseria_flavescens -0.198710 -1.950084
## Neisseria_subflava -0.198710 -1.950084
## Stenotrophomonas_maltophilia -0.198710 -1.950084
## Stenotrophomonas_pavanii -0.198710 -1.950084
## Stenotrophomonas_rhizophila -0.198710 -1.950084
## Bacillus_intestinalis -0.198710 -1.950084
## Listeria_innocua -0.198710 -1.950084
## Listeria_monocytogenes -0.198710 -1.950084
## Staphylococcus_haemolyticus -0.198710 -1.950084
## Streptococcus_sobrinus -0.198710 -1.950084
## Eggerthia_catenaformis -0.198710 -1.950084
## Leptotrichia_sp_oral_taxon_498 -0.198710 8.871432
## Rickettsia_felis -0.198710 -1.950084
## Haemophilus_parainfluenzae -0.198710 -1.950084
## Candida_orthopsilosis -0.198710 -1.950084
## Nannocystis_exedens -0.198710 -1.950084
## Campylobacter_concisus -0.198710 7.410313
## Franconibacter_helveticus -0.198710 -1.950084
## Klebsiella_pneumoniae -0.198710 -1.950084
## Salmonella_enterica -0.198710 -1.950084
## Superficieibacter_electus -0.198710 -1.950084
## Pseudomonas_fluorescens -0.198710 -1.950084
## Saccharomyces_cerevisiae -0.198710 -1.950084
## S._cerevisiae x S._kudriavzevii -0.198710 -1.950084
## Saccharomyces_kudriavzevii -0.198710 -1.950084
## Cryptococcus_gattii_VGI -0.198710 -1.950084
## Cryptococcus_gattii_VGII -0.198710 -1.950084
## Cryptococcus_gattii_VGIII -0.198710 -1.950084
## Cryptococcus_neoformans -0.198710 -1.950084
## Listeria_marthii -0.198710 -1.950084
## Erwinia_persicina -0.198710 -1.950084
## Pseudomonas_formosensis -0.198710 -1.950084
## Pseudomonas_putida -0.198710 -1.950084
## BAL_079_b_host_zero BAL_078_f_qiaamp
## Actinobaculum_sp_oral_taxon_183 -0.2876067 -0.383636
## Actinomyces_georgiae -0.2876067 -0.383636
## Actinomyces_graevenitzii -0.2876067 -0.383636
## Actinomyces_hongkongensis -0.2876067 -0.383636
## Actinomyces_johnsonii -0.2876067 -0.383636
## Actinomyces_massiliensis -0.2876067 -0.383636
## Actinomyces_meyeri -0.2876067 -0.383636
## Actinomyces_naeslundii -0.2876067 -0.383636
## Actinomyces_odontolyticus 7.2936031 -0.383636
## Actinomyces_oris -0.2876067 -0.383636
## Actinomyces_sp_HMSC035G02 6.1421127 -0.383636
## Actinomyces_sp_HPA0247 8.1387861 -0.383636
## Actinomyces_sp_ICM47 -0.2876067 -0.383636
## Actinomyces_sp_S6_Spd3 -0.2876067 -0.383636
## Actinomyces_sp_oral_taxon_170 -0.2876067 -0.383636
## Actinomyces_sp_oral_taxon_180 -0.2876067 -0.383636
## Actinomyces_sp_oral_taxon_181 -0.2876067 -0.383636
## Actinomyces_sp_oral_taxon_414 -0.2876067 -0.383636
## Actinomyces_sp_oral_taxon_448 -0.2876067 -0.383636
## Actinomyces_sp_oral_taxon_897 -0.2876067 -0.383636
## Actinomyces_viscosus -0.2876067 -0.383636
## Aeriscardovia_aeriphila -0.2876067 -0.383636
## Alloscardovia_omnicolens -0.2876067 -0.383636
## Bifidobacterium_dentium -0.2876067 -0.383636
## Bifidobacterium_longum -0.2876067 -0.383636
## Scardovia_wiggsiae -0.2876067 -0.383636
## Corynebacterium_accolens -0.2876067 -0.383636
## Corynebacterium_atypicum -0.2876067 -0.383636
## Corynebacterium_durum -0.2876067 -0.383636
## Corynebacterium_matruchotii -0.2876067 -0.383636
## Corynebacterium_pseudodiphtheriticum -0.2876067 -0.383636
## Corynebacterium_pseudogenitalium -0.2876067 -0.383636
## Corynebacterium_tuberculostearicum -0.2876067 -0.383636
## Rothia_aeria -0.2876067 -0.383636
## Rothia_dentocariosa -0.2876067 -0.383636
## Rothia_mucilaginosa 8.3973019 -0.383636
## Cutibacterium_acnes -0.2876067 -0.383636
## Cutibacterium_granulosum -0.2876067 -0.383636
## Propionibacterium_humerusii -0.2876067 -0.383636
## Propionibacterium_namnetense -0.2876067 -0.383636
## Propionibacterium_acidifaciens -0.2876067 -0.383636
## Pseudopropionibacterium_propionicum -0.2876067 -0.383636
## Atopobium_deltae -0.2876067 -0.383636
## Atopobium_parvulum -0.2876067 -0.383636
## Atopobium_rimae -0.2876067 -0.383636
## Olsenella_profusa -0.2876067 -0.383636
## Olsenella_scatoligenes -0.2876067 -0.383636
## Olsenella_uli -0.2876067 -0.383636
## Collinsella_aerofaciens -0.2876067 -0.383636
## Collinsella_intestinalis -0.2876067 -0.383636
## Collinsella_stercoris -0.2876067 -0.383636
## Enorma_massiliensis -0.2876067 -0.383636
## [Collinsella]_massiliensis -0.2876067 -0.383636
## Asaccharobacter_celatus -0.2876067 -0.383636
## Denitrobacterium_detoxificans -0.2876067 -0.383636
## Enterorhabdus_caecimuris -0.2876067 -0.383636
## Slackia_exigua -0.2876067 -0.383636
## Slackia_isoflavoniconvertens -0.2876067 -0.383636
## Rubrobacter_radiotolerans -0.2876067 -0.383636
## Thermoleophilum_album -0.2876067 -0.383636
## Porphyromonas_endodontalis -0.2876067 -0.383636
## Porphyromonas_somerae -0.2876067 -0.383636
## Prevotella_histicola -0.2876067 -0.383636
## Prevotella_melaninogenica -0.2876067 -0.383636
## Prevotella_oris -0.2876067 -0.383636
## Kouleothrix_aurantiaca -0.2876067 -0.383636
## Hydrogenibacillus_schlegelii -0.2876067 -0.383636
## Gemella_asaccharolytica -0.2876067 -0.383636
## Gemella_bergeri -0.2876067 -0.383636
## Gemella_haemolysans -0.2876067 4.606797
## Gemella_morbillorum -0.2876067 -0.383636
## Gemella_sanguinis -0.2876067 -0.383636
## Brochothrix_campestris -0.2876067 -0.383636
## Staphylococcus_argenteus -0.2876067 -0.383636
## Staphylococcus_aureus -0.2876067 -0.383636
## Staphylococcus_epidermidis -0.2876067 -0.383636
## Staphylococcus_schweitzeri -0.2876067 -0.383636
## Abiotrophia_defectiva -0.2876067 -0.383636
## Abiotrophia_sp_HMSC24B09 -0.2876067 -0.383636
## Dolosigranulum_pigrum -0.2876067 -0.383636
## Granulicatella_adiacens -0.2876067 -0.383636
## Granulicatella_elegans -0.2876067 -0.383636
## Enterococcus_faecalis -0.2876067 -0.383636
## Lactobacillus_rhamnosus -0.2876067 -0.383636
## Streptococcus_anginosus -0.2876067 -0.383636
## Streptococcus_australis -0.2876067 -0.383636
## Streptococcus_cristatus -0.2876067 -0.383636
## Streptococcus_gordonii -0.2876067 -0.383636
## Streptococcus_infantis -0.2876067 -0.383636
## Streptococcus_milleri -0.2876067 -0.383636
## Streptococcus_mitis -0.2876067 -0.383636
## Streptococcus_oralis -0.2876067 -0.383636
## Streptococcus_parasanguinis 6.1939704 -0.383636
## Streptococcus_peroris -0.2876067 -0.383636
## Streptococcus_pneumoniae -0.2876067 -0.383636
## Streptococcus_pseudopneumoniae -0.2876067 -0.383636
## Streptococcus_salivarius -0.2876067 -0.383636
## Streptococcus_sanguinis -0.2876067 -0.383636
## Streptococcus_sp_A12 -0.2876067 -0.383636
## Streptococcus_sp_F0442 -0.2876067 -0.383636
## Streptococcus_sp_HMSC034E03 -0.2876067 -0.383636
## Streptococcus_sp_HMSC067H01 -0.2876067 -0.383636
## Streptococcus_sp_HMSC071D03 -0.2876067 -0.383636
## Streptococcus_sp_HPH0090 -0.2876067 -0.383636
## Streptococcus_sp_M334 -0.2876067 -0.383636
## Streptococcus_vestibularis -0.2876067 -0.383636
## Eubacterium_brachy -0.2876067 -0.383636
## Eubacterium_infirmum -0.2876067 -0.383636
## Eubacterium_nodatum -0.2876067 -0.383636
## Eubacterium_sulci -0.2876067 -0.383636
## Mogibacterium_diversum -0.2876067 -0.383636
## Mogibacterium_pumilum -0.2876067 -0.383636
## Mogibacterium_timidum -0.2876067 -0.383636
## Lachnoanaerobaculum_saburreum -0.2876067 -0.383636
## Oribacterium_parvum -0.2876067 -0.383636
## Oribacterium_sinus -0.2876067 -0.383636
## Oribacterium_sp_oral_taxon_078 -0.2876067 -0.383636
## Stomatobaculum_longum -0.2876067 -0.383636
## Peptostreptococcus_stomatis -0.2876067 -0.383636
## Bulleidia_extructa -0.2876067 -0.383636
## Solobacterium_moorei -0.2876067 -0.383636
## Limnochorda_pilosa -0.2876067 -0.383636
## Veillonella_atypica -0.2876067 -0.383636
## Veillonella_dispar -0.2876067 -0.383636
## Veillonella_infantium -0.2876067 -0.383636
## Veillonella_parvula -0.2876067 -0.383636
## Veillonella_sp_T11011_6 -0.2876067 -0.383636
## Anaerococcus_nagyae -0.2876067 -0.383636
## Finegoldia_magna -0.2876067 -0.383636
## Parvimonas_micra -0.2876067 -0.383636
## Parvimonas_sp_oral_taxon_110 -0.2876067 -0.383636
## Parvimonas_sp_oral_taxon_393 -0.2876067 -0.383636
## Fusobacterium_nucleatum -0.2876067 -0.383636
## Leptotrichia_wadei -0.2876067 -0.383636
## Gemmata_obscuriglobus -0.2876067 5.834964
## Paludisphaera_borealis -0.2876067 -0.383636
## Achromobacter_xylosoxidans -0.2876067 -0.383636
## Cupriavidus_sp 12.0689915 12.581020
## Sutterella_parvirubra 5.0006603 6.368634
## Anaerobiospirillum_thomasii -0.2876067 -0.383636
## Cardiobacterium_hominis -0.2876067 -0.383636
## Cardiobacterium_valvarum 2.8478875 -0.383636
## Alkalilimnicola_ehrlichii -0.2876067 -0.383636
## Escherichia_coli -0.2876067 -0.383636
## Thiohalorhabdus_denitrificans -0.2876067 -0.383636
## Pseudomonas_aeruginosa -0.2876067 -0.383636
## Acholeplasma_oculi -0.2876067 -0.383636
## Candida_albicans -0.2876067 -0.383636
## Candida_dubliniensis -0.2876067 -0.383636
## Candida_parapsilosis -0.2876067 10.243334
## Malassezia_restricta -0.2876067 -0.383636
## Nakamurella_silvestris -0.2876067 -0.383636
## Alloprevotella_tannerae -0.2876067 -0.383636
## Prevotella_jejuni -0.2876067 -0.383636
## Prevotella_pallens -0.2876067 -0.383636
## Prevotella_salivae -0.2876067 -0.383636
## Prevotella_sp_oral_taxon_306 -0.2876067 -0.383636
## Prevotella_veroralis -0.2876067 -0.383636
## Tannerella_sp_oral_taxon_808 -0.2876067 -0.383636
## Tannerella_sp_oral_taxon_HOT_286 -0.2876067 -0.383636
## Capnocytophaga_gingivalis -0.2876067 -0.383636
## Bacillus_ginsengihumi -0.2876067 -0.383636
## Listeria_floridensis -0.2876067 -0.383636
## Agitococcus_lubricus -0.2876067 -0.383636
## Lactobacillus_fermentum -0.2876067 11.096952
## Lactobacillus_gasseri -0.2876067 -0.383636
## Sharpea_azabuensis -0.2876067 -0.383636
## Streptococcus_mutans -0.2876067 -0.383636
## Oribacterium_asaccharolyticum -0.2876067 -0.383636
## Megasphaera_micronuciformis -0.2876067 -0.383636
## Neisseria_flavescens -0.2876067 -0.383636
## Neisseria_subflava -0.2876067 -0.383636
## Stenotrophomonas_maltophilia -0.2876067 -0.383636
## Stenotrophomonas_pavanii -0.2876067 -0.383636
## Stenotrophomonas_rhizophila -0.2876067 -0.383636
## Bacillus_intestinalis -0.2876067 -0.383636
## Listeria_innocua -0.2876067 -0.383636
## Listeria_monocytogenes -0.2876067 -0.383636
## Staphylococcus_haemolyticus -0.2876067 11.819663
## Streptococcus_sobrinus -0.2876067 -0.383636
## Eggerthia_catenaformis -0.2876067 -0.383636
## Leptotrichia_sp_oral_taxon_498 -0.2876067 -0.383636
## Rickettsia_felis -0.2876067 -0.383636
## Haemophilus_parainfluenzae -0.2876067 -0.383636
## Candida_orthopsilosis -0.2876067 12.257658
## Nannocystis_exedens -0.2876067 -0.383636
## Campylobacter_concisus -0.2876067 -0.383636
## Franconibacter_helveticus -0.2876067 -0.383636
## Klebsiella_pneumoniae -0.2876067 -0.383636
## Salmonella_enterica -0.2876067 -0.383636
## Superficieibacter_electus -0.2876067 -0.383636
## Pseudomonas_fluorescens -0.2876067 -0.383636
## Saccharomyces_cerevisiae -0.2876067 -0.383636
## S._cerevisiae x S._kudriavzevii -0.2876067 -0.383636
## Saccharomyces_kudriavzevii -0.2876067 -0.383636
## Cryptococcus_gattii_VGI -0.2876067 -0.383636
## Cryptococcus_gattii_VGII -0.2876067 -0.383636
## Cryptococcus_gattii_VGIII -0.2876067 -0.383636
## Cryptococcus_neoformans -0.2876067 -0.383636
## Listeria_marthii -0.2876067 -0.383636
## Erwinia_persicina -0.2876067 -0.383636
## Pseudomonas_formosensis -0.2876067 -0.383636
## Pseudomonas_putida -0.2876067 -0.383636
## BAL_078_e_benzonase BAL_078_d_lyPMA
## Actinobaculum_sp_oral_taxon_183 -0.3236242 -0.4344773
## Actinomyces_georgiae -0.3236242 -0.4344773
## Actinomyces_graevenitzii -0.3236242 -0.4344773
## Actinomyces_hongkongensis -0.3236242 -0.4344773
## Actinomyces_johnsonii -0.3236242 -0.4344773
## Actinomyces_massiliensis -0.3236242 -0.4344773
## Actinomyces_meyeri -0.3236242 -0.4344773
## Actinomyces_naeslundii -0.3236242 -0.4344773
## Actinomyces_odontolyticus -0.3236242 -0.4344773
## Actinomyces_oris -0.3236242 -0.4344773
## Actinomyces_sp_HMSC035G02 -0.3236242 -0.4344773
## Actinomyces_sp_HPA0247 -0.3236242 -0.4344773
## Actinomyces_sp_ICM47 -0.3236242 -0.4344773
## Actinomyces_sp_S6_Spd3 -0.3236242 -0.4344773
## Actinomyces_sp_oral_taxon_170 -0.3236242 -0.4344773
## Actinomyces_sp_oral_taxon_180 -0.3236242 -0.4344773
## Actinomyces_sp_oral_taxon_181 -0.3236242 -0.4344773
## Actinomyces_sp_oral_taxon_414 -0.3236242 -0.4344773
## Actinomyces_sp_oral_taxon_448 -0.3236242 -0.4344773
## Actinomyces_sp_oral_taxon_897 -0.3236242 -0.4344773
## Actinomyces_viscosus -0.3236242 -0.4344773
## Aeriscardovia_aeriphila -0.3236242 -0.4344773
## Alloscardovia_omnicolens -0.3236242 -0.4344773
## Bifidobacterium_dentium -0.3236242 -0.4344773
## Bifidobacterium_longum -0.3236242 -0.4344773
## Scardovia_wiggsiae -0.3236242 -0.4344773
## Corynebacterium_accolens -0.3236242 -0.4344773
## Corynebacterium_atypicum -0.3236242 -0.4344773
## Corynebacterium_durum -0.3236242 -0.4344773
## Corynebacterium_matruchotii -0.3236242 -0.4344773
## Corynebacterium_pseudodiphtheriticum -0.3236242 -0.4344773
## Corynebacterium_pseudogenitalium -0.3236242 -0.4344773
## Corynebacterium_tuberculostearicum -0.3236242 -0.4344773
## Rothia_aeria -0.3236242 -0.4344773
## Rothia_dentocariosa -0.3236242 -0.4344773
## Rothia_mucilaginosa -0.3236242 -0.4344773
## Cutibacterium_acnes -0.3236242 6.8118908
## Cutibacterium_granulosum -0.3236242 5.6316308
## Propionibacterium_humerusii -0.3236242 -0.4344773
## Propionibacterium_namnetense -0.3236242 -0.4344773
## Propionibacterium_acidifaciens -0.3236242 -0.4344773
## Pseudopropionibacterium_propionicum -0.3236242 -0.4344773
## Atopobium_deltae -0.3236242 -0.4344773
## Atopobium_parvulum 4.8238703 -0.4344773
## Atopobium_rimae -0.3236242 -0.4344773
## Olsenella_profusa -0.3236242 -0.4344773
## Olsenella_scatoligenes -0.3236242 -0.4344773
## Olsenella_uli -0.3236242 -0.4344773
## Collinsella_aerofaciens -0.3236242 -0.4344773
## Collinsella_intestinalis -0.3236242 -0.4344773
## Collinsella_stercoris -0.3236242 -0.4344773
## Enorma_massiliensis -0.3236242 -0.4344773
## [Collinsella]_massiliensis -0.3236242 -0.4344773
## Asaccharobacter_celatus -0.3236242 -0.4344773
## Denitrobacterium_detoxificans -0.3236242 -0.4344773
## Enterorhabdus_caecimuris -0.3236242 -0.4344773
## Slackia_exigua -0.3236242 -0.4344773
## Slackia_isoflavoniconvertens -0.3236242 -0.4344773
## Rubrobacter_radiotolerans -0.3236242 -0.4344773
## Thermoleophilum_album -0.3236242 -0.4344773
## Porphyromonas_endodontalis -0.3236242 -0.4344773
## Porphyromonas_somerae -0.3236242 -0.4344773
## Prevotella_histicola -0.3236242 -0.4344773
## Prevotella_melaninogenica -0.3236242 -0.4344773
## Prevotella_oris -0.3236242 -0.4344773
## Kouleothrix_aurantiaca -0.3236242 -0.4344773
## Hydrogenibacillus_schlegelii -0.3236242 -0.4344773
## Gemella_asaccharolytica -0.3236242 -0.4344773
## Gemella_bergeri -0.3236242 -0.4344773
## Gemella_haemolysans -0.3236242 -0.4344773
## Gemella_morbillorum -0.3236242 -0.4344773
## Gemella_sanguinis -0.3236242 -0.4344773
## Brochothrix_campestris -0.3236242 -0.4344773
## Staphylococcus_argenteus -0.3236242 -0.4344773
## Staphylococcus_aureus -0.3236242 -0.4344773
## Staphylococcus_epidermidis -0.3236242 -0.4344773
## Staphylococcus_schweitzeri -0.3236242 -0.4344773
## Abiotrophia_defectiva -0.3236242 -0.4344773
## Abiotrophia_sp_HMSC24B09 -0.3236242 -0.4344773
## Dolosigranulum_pigrum -0.3236242 -0.4344773
## Granulicatella_adiacens -0.3236242 -0.4344773
## Granulicatella_elegans -0.3236242 -0.4344773
## Enterococcus_faecalis -0.3236242 -0.4344773
## Lactobacillus_rhamnosus -0.3236242 -0.4344773
## Streptococcus_anginosus -0.3236242 -0.4344773
## Streptococcus_australis -0.3236242 -0.4344773
## Streptococcus_cristatus -0.3236242 -0.4344773
## Streptococcus_gordonii -0.3236242 -0.4344773
## Streptococcus_infantis -0.3236242 -0.4344773
## Streptococcus_milleri -0.3236242 -0.4344773
## Streptococcus_mitis -0.3236242 -0.4344773
## Streptococcus_oralis -0.3236242 -0.4344773
## Streptococcus_parasanguinis -0.3236242 -0.4344773
## Streptococcus_peroris -0.3236242 -0.4344773
## Streptococcus_pneumoniae -0.3236242 -0.4344773
## Streptococcus_pseudopneumoniae -0.3236242 -0.4344773
## Streptococcus_salivarius -0.3236242 -0.4344773
## Streptococcus_sanguinis -0.3236242 -0.4344773
## Streptococcus_sp_A12 -0.3236242 -0.4344773
## Streptococcus_sp_F0442 -0.3236242 -0.4344773
## Streptococcus_sp_HMSC034E03 -0.3236242 -0.4344773
## Streptococcus_sp_HMSC067H01 -0.3236242 -0.4344773
## Streptococcus_sp_HMSC071D03 -0.3236242 -0.4344773
## Streptococcus_sp_HPH0090 -0.3236242 -0.4344773
## Streptococcus_sp_M334 -0.3236242 -0.4344773
## Streptococcus_vestibularis -0.3236242 -0.4344773
## Eubacterium_brachy -0.3236242 -0.4344773
## Eubacterium_infirmum -0.3236242 -0.4344773
## Eubacterium_nodatum -0.3236242 -0.4344773
## Eubacterium_sulci -0.3236242 -0.4344773
## Mogibacterium_diversum -0.3236242 -0.4344773
## Mogibacterium_pumilum -0.3236242 -0.4344773
## Mogibacterium_timidum -0.3236242 -0.4344773
## Lachnoanaerobaculum_saburreum -0.3236242 -0.4344773
## Oribacterium_parvum -0.3236242 -0.4344773
## Oribacterium_sinus -0.3236242 -0.4344773
## Oribacterium_sp_oral_taxon_078 -0.3236242 -0.4344773
## Stomatobaculum_longum -0.3236242 -0.4344773
## Peptostreptococcus_stomatis -0.3236242 -0.4344773
## Bulleidia_extructa -0.3236242 -0.4344773
## Solobacterium_moorei -0.3236242 -0.4344773
## Limnochorda_pilosa -0.3236242 -0.4344773
## Veillonella_atypica -0.3236242 -0.4344773
## Veillonella_dispar -0.3236242 -0.4344773
## Veillonella_infantium -0.3236242 -0.4344773
## Veillonella_parvula -0.3236242 -0.4344773
## Veillonella_sp_T11011_6 -0.3236242 -0.4344773
## Anaerococcus_nagyae -0.3236242 -0.4344773
## Finegoldia_magna -0.3236242 -0.4344773
## Parvimonas_micra -0.3236242 -0.4344773
## Parvimonas_sp_oral_taxon_110 -0.3236242 -0.4344773
## Parvimonas_sp_oral_taxon_393 -0.3236242 -0.4344773
## Fusobacterium_nucleatum -0.3236242 -0.4344773
## Leptotrichia_wadei -0.3236242 -0.4344773
## Gemmata_obscuriglobus -0.3236242 -0.4344773
## Paludisphaera_borealis -0.3236242 -0.4344773
## Achromobacter_xylosoxidans -0.3236242 -0.4344773
## Cupriavidus_sp 11.2087019 12.6594043
## Sutterella_parvirubra 5.6603121 6.0363222
## Anaerobiospirillum_thomasii -0.3236242 -0.4344773
## Cardiobacterium_hominis -0.3236242 -0.4344773
## Cardiobacterium_valvarum -0.3236242 -0.4344773
## Alkalilimnicola_ehrlichii -0.3236242 -0.4344773
## Escherichia_coli -0.3236242 -0.4344773
## Thiohalorhabdus_denitrificans -0.3236242 -0.4344773
## Pseudomonas_aeruginosa -0.3236242 -0.4344773
## Acholeplasma_oculi -0.3236242 -0.4344773
## Candida_albicans -0.3236242 -0.4344773
## Candida_dubliniensis -0.3236242 -0.4344773
## Candida_parapsilosis 9.0997286 11.3875859
## Malassezia_restricta -0.3236242 8.2559967
## Nakamurella_silvestris -0.3236242 -0.4344773
## Alloprevotella_tannerae -0.3236242 -0.4344773
## Prevotella_jejuni -0.3236242 -0.4344773
## Prevotella_pallens -0.3236242 -0.4344773
## Prevotella_salivae -0.3236242 -0.4344773
## Prevotella_sp_oral_taxon_306 -0.3236242 -0.4344773
## Prevotella_veroralis -0.3236242 -0.4344773
## Tannerella_sp_oral_taxon_808 -0.3236242 -0.4344773
## Tannerella_sp_oral_taxon_HOT_286 -0.3236242 -0.4344773
## Capnocytophaga_gingivalis -0.3236242 -0.4344773
## Bacillus_ginsengihumi -0.3236242 -0.4344773
## Listeria_floridensis -0.3236242 -0.4344773
## Agitococcus_lubricus -0.3236242 -0.4344773
## Lactobacillus_fermentum 10.0888473 10.1840412
## Lactobacillus_gasseri -0.3236242 -0.4344773
## Sharpea_azabuensis -0.3236242 -0.4344773
## Streptococcus_mutans -0.3236242 -0.4344773
## Oribacterium_asaccharolyticum -0.3236242 -0.4344773
## Megasphaera_micronuciformis -0.3236242 -0.4344773
## Neisseria_flavescens -0.3236242 -0.4344773
## Neisseria_subflava -0.3236242 -0.4344773
## Stenotrophomonas_maltophilia -0.3236242 -0.4344773
## Stenotrophomonas_pavanii -0.3236242 -0.4344773
## Stenotrophomonas_rhizophila -0.3236242 -0.4344773
## Bacillus_intestinalis -0.3236242 -0.4344773
## Listeria_innocua -0.3236242 -0.4344773
## Listeria_monocytogenes -0.3236242 -0.4344773
## Staphylococcus_haemolyticus 11.4262057 9.9200222
## Streptococcus_sobrinus -0.3236242 -0.4344773
## Eggerthia_catenaformis -0.3236242 -0.4344773
## Leptotrichia_sp_oral_taxon_498 -0.3236242 -0.4344773
## Rickettsia_felis -0.3236242 -0.4344773
## Haemophilus_parainfluenzae -0.3236242 -0.4344773
## Candida_orthopsilosis 11.1226699 13.4017032
## Nannocystis_exedens -0.3236242 -0.4344773
## Campylobacter_concisus -0.3236242 -0.4344773
## Franconibacter_helveticus -0.3236242 -0.4344773
## Klebsiella_pneumoniae -0.3236242 -0.4344773
## Salmonella_enterica -0.3236242 -0.4344773
## Superficieibacter_electus -0.3236242 -0.4344773
## Pseudomonas_fluorescens -0.3236242 -0.4344773
## Saccharomyces_cerevisiae -0.3236242 -0.4344773
## S._cerevisiae x S._kudriavzevii -0.3236242 -0.4344773
## Saccharomyces_kudriavzevii -0.3236242 -0.4344773
## Cryptococcus_gattii_VGI -0.3236242 -0.4344773
## Cryptococcus_gattii_VGII -0.3236242 -0.4344773
## Cryptococcus_gattii_VGIII -0.3236242 -0.4344773
## Cryptococcus_neoformans -0.3236242 -0.4344773
## Listeria_marthii -0.3236242 -0.4344773
## Erwinia_persicina -0.3236242 -0.4344773
## Pseudomonas_formosensis -0.3236242 -0.4344773
## Pseudomonas_putida -0.3236242 -0.4344773
## BAL_078_c_molysis BAL_078_b_host_zero
## Actinobaculum_sp_oral_taxon_183 -0.3348395 -0.3648863
## Actinomyces_georgiae -0.3348395 -0.3648863
## Actinomyces_graevenitzii -0.3348395 -0.3648863
## Actinomyces_hongkongensis -0.3348395 -0.3648863
## Actinomyces_johnsonii -0.3348395 -0.3648863
## Actinomyces_massiliensis -0.3348395 -0.3648863
## Actinomyces_meyeri -0.3348395 -0.3648863
## Actinomyces_naeslundii -0.3348395 -0.3648863
## Actinomyces_odontolyticus -0.3348395 -0.3648863
## Actinomyces_oris -0.3348395 -0.3648863
## Actinomyces_sp_HMSC035G02 -0.3348395 -0.3648863
## Actinomyces_sp_HPA0247 -0.3348395 -0.3648863
## Actinomyces_sp_ICM47 -0.3348395 -0.3648863
## Actinomyces_sp_S6_Spd3 -0.3348395 -0.3648863
## Actinomyces_sp_oral_taxon_170 -0.3348395 -0.3648863
## Actinomyces_sp_oral_taxon_180 -0.3348395 -0.3648863
## Actinomyces_sp_oral_taxon_181 -0.3348395 -0.3648863
## Actinomyces_sp_oral_taxon_414 -0.3348395 -0.3648863
## Actinomyces_sp_oral_taxon_448 -0.3348395 -0.3648863
## Actinomyces_sp_oral_taxon_897 -0.3348395 -0.3648863
## Actinomyces_viscosus -0.3348395 -0.3648863
## Aeriscardovia_aeriphila -0.3348395 -0.3648863
## Alloscardovia_omnicolens -0.3348395 -0.3648863
## Bifidobacterium_dentium -0.3348395 -0.3648863
## Bifidobacterium_longum -0.3348395 -0.3648863
## Scardovia_wiggsiae -0.3348395 -0.3648863
## Corynebacterium_accolens -0.3348395 -0.3648863
## Corynebacterium_atypicum -0.3348395 -0.3648863
## Corynebacterium_durum -0.3348395 -0.3648863
## Corynebacterium_matruchotii -0.3348395 -0.3648863
## Corynebacterium_pseudodiphtheriticum -0.3348395 -0.3648863
## Corynebacterium_pseudogenitalium -0.3348395 -0.3648863
## Corynebacterium_tuberculostearicum -0.3348395 -0.3648863
## Rothia_aeria -0.3348395 -0.3648863
## Rothia_dentocariosa -0.3348395 -0.3648863
## Rothia_mucilaginosa -0.3348395 -0.3648863
## Cutibacterium_acnes -0.3348395 4.3355941
## Cutibacterium_granulosum -0.3348395 -0.3648863
## Propionibacterium_humerusii -0.3348395 -0.3648863
## Propionibacterium_namnetense -0.3348395 -0.3648863
## Propionibacterium_acidifaciens -0.3348395 -0.3648863
## Pseudopropionibacterium_propionicum -0.3348395 -0.3648863
## Atopobium_deltae -0.3348395 -0.3648863
## Atopobium_parvulum -0.3348395 -0.3648863
## Atopobium_rimae -0.3348395 -0.3648863
## Olsenella_profusa -0.3348395 -0.3648863
## Olsenella_scatoligenes -0.3348395 -0.3648863
## Olsenella_uli -0.3348395 -0.3648863
## Collinsella_aerofaciens -0.3348395 -0.3648863
## Collinsella_intestinalis -0.3348395 -0.3648863
## Collinsella_stercoris -0.3348395 -0.3648863
## Enorma_massiliensis -0.3348395 -0.3648863
## [Collinsella]_massiliensis -0.3348395 -0.3648863
## Asaccharobacter_celatus -0.3348395 -0.3648863
## Denitrobacterium_detoxificans -0.3348395 -0.3648863
## Enterorhabdus_caecimuris -0.3348395 -0.3648863
## Slackia_exigua -0.3348395 -0.3648863
## Slackia_isoflavoniconvertens -0.3348395 -0.3648863
## Rubrobacter_radiotolerans -0.3348395 -0.3648863
## Thermoleophilum_album -0.3348395 -0.3648863
## Porphyromonas_endodontalis -0.3348395 -0.3648863
## Porphyromonas_somerae -0.3348395 -0.3648863
## Prevotella_histicola -0.3348395 -0.3648863
## Prevotella_melaninogenica -0.3348395 -0.3648863
## Prevotella_oris -0.3348395 -0.3648863
## Kouleothrix_aurantiaca -0.3348395 -0.3648863
## Hydrogenibacillus_schlegelii -0.3348395 -0.3648863
## Gemella_asaccharolytica -0.3348395 -0.3648863
## Gemella_bergeri -0.3348395 -0.3648863
## Gemella_haemolysans 4.4526522 -0.3648863
## Gemella_morbillorum -0.3348395 -0.3648863
## Gemella_sanguinis -0.3348395 -0.3648863
## Brochothrix_campestris -0.3348395 -0.3648863
## Staphylococcus_argenteus -0.3348395 -0.3648863
## Staphylococcus_aureus -0.3348395 -0.3648863
## Staphylococcus_epidermidis -0.3348395 -0.3648863
## Staphylococcus_schweitzeri -0.3348395 -0.3648863
## Abiotrophia_defectiva -0.3348395 -0.3648863
## Abiotrophia_sp_HMSC24B09 -0.3348395 -0.3648863
## Dolosigranulum_pigrum -0.3348395 -0.3648863
## Granulicatella_adiacens -0.3348395 -0.3648863
## Granulicatella_elegans -0.3348395 -0.3648863
## Enterococcus_faecalis -0.3348395 -0.3648863
## Lactobacillus_rhamnosus -0.3348395 -0.3648863
## Streptococcus_anginosus -0.3348395 -0.3648863
## Streptococcus_australis -0.3348395 -0.3648863
## Streptococcus_cristatus -0.3348395 -0.3648863
## Streptococcus_gordonii -0.3348395 -0.3648863
## Streptococcus_infantis -0.3348395 -0.3648863
## Streptococcus_milleri -0.3348395 -0.3648863
## Streptococcus_mitis -0.3348395 -0.3648863
## Streptococcus_oralis -0.3348395 -0.3648863
## Streptococcus_parasanguinis -0.3348395 -0.3648863
## Streptococcus_peroris -0.3348395 -0.3648863
## Streptococcus_pneumoniae -0.3348395 -0.3648863
## Streptococcus_pseudopneumoniae -0.3348395 -0.3648863
## Streptococcus_salivarius -0.3348395 -0.3648863
## Streptococcus_sanguinis -0.3348395 -0.3648863
## Streptococcus_sp_A12 -0.3348395 -0.3648863
## Streptococcus_sp_F0442 -0.3348395 -0.3648863
## Streptococcus_sp_HMSC034E03 -0.3348395 -0.3648863
## Streptococcus_sp_HMSC067H01 -0.3348395 -0.3648863
## Streptococcus_sp_HMSC071D03 -0.3348395 -0.3648863
## Streptococcus_sp_HPH0090 -0.3348395 -0.3648863
## Streptococcus_sp_M334 -0.3348395 -0.3648863
## Streptococcus_vestibularis -0.3348395 -0.3648863
## Eubacterium_brachy -0.3348395 -0.3648863
## Eubacterium_infirmum -0.3348395 -0.3648863
## Eubacterium_nodatum -0.3348395 -0.3648863
## Eubacterium_sulci -0.3348395 -0.3648863
## Mogibacterium_diversum -0.3348395 -0.3648863
## Mogibacterium_pumilum -0.3348395 -0.3648863
## Mogibacterium_timidum -0.3348395 -0.3648863
## Lachnoanaerobaculum_saburreum -0.3348395 -0.3648863
## Oribacterium_parvum -0.3348395 -0.3648863
## Oribacterium_sinus -0.3348395 -0.3648863
## Oribacterium_sp_oral_taxon_078 -0.3348395 -0.3648863
## Stomatobaculum_longum -0.3348395 -0.3648863
## Peptostreptococcus_stomatis -0.3348395 -0.3648863
## Bulleidia_extructa -0.3348395 -0.3648863
## Solobacterium_moorei -0.3348395 -0.3648863
## Limnochorda_pilosa -0.3348395 -0.3648863
## Veillonella_atypica -0.3348395 -0.3648863
## Veillonella_dispar -0.3348395 -0.3648863
## Veillonella_infantium -0.3348395 -0.3648863
## Veillonella_parvula -0.3348395 -0.3648863
## Veillonella_sp_T11011_6 -0.3348395 -0.3648863
## Anaerococcus_nagyae -0.3348395 -0.3648863
## Finegoldia_magna -0.3348395 -0.3648863
## Parvimonas_micra -0.3348395 -0.3648863
## Parvimonas_sp_oral_taxon_110 -0.3348395 -0.3648863
## Parvimonas_sp_oral_taxon_393 -0.3348395 -0.3648863
## Fusobacterium_nucleatum -0.3348395 -0.3648863
## Leptotrichia_wadei -0.3348395 -0.3648863
## Gemmata_obscuriglobus -0.3348395 -0.3648863
## Paludisphaera_borealis -0.3348395 -0.3648863
## Achromobacter_xylosoxidans -0.3348395 -0.3648863
## Cupriavidus_sp 12.0310065 12.4591546
## Sutterella_parvirubra 4.3191208 7.0658208
## Anaerobiospirillum_thomasii -0.3348395 -0.3648863
## Cardiobacterium_hominis -0.3348395 -0.3648863
## Cardiobacterium_valvarum -0.3348395 -0.3648863
## Alkalilimnicola_ehrlichii -0.3348395 -0.3648863
## Escherichia_coli -0.3348395 -0.3648863
## Thiohalorhabdus_denitrificans -0.3348395 -0.3648863
## Pseudomonas_aeruginosa -0.3348395 -0.3648863
## Acholeplasma_oculi -0.3348395 -0.3648863
## Candida_albicans -0.3348395 -0.3648863
## Candida_dubliniensis -0.3348395 -0.3648863
## Candida_parapsilosis 10.0143910 11.3459141
## Malassezia_restricta -0.3348395 -0.3648863
## Nakamurella_silvestris -0.3348395 -0.3648863
## Alloprevotella_tannerae -0.3348395 -0.3648863
## Prevotella_jejuni -0.3348395 -0.3648863
## Prevotella_pallens -0.3348395 -0.3648863
## Prevotella_salivae -0.3348395 -0.3648863
## Prevotella_sp_oral_taxon_306 -0.3348395 -0.3648863
## Prevotella_veroralis -0.3348395 -0.3648863
## Tannerella_sp_oral_taxon_808 -0.3348395 -0.3648863
## Tannerella_sp_oral_taxon_HOT_286 -0.3348395 -0.3648863
## Capnocytophaga_gingivalis -0.3348395 -0.3648863
## Bacillus_ginsengihumi -0.3348395 -0.3648863
## Listeria_floridensis -0.3348395 -0.3648863
## Agitococcus_lubricus -0.3348395 -0.3648863
## Lactobacillus_fermentum 11.2456605 11.0059340
## Lactobacillus_gasseri -0.3348395 -0.3648863
## Sharpea_azabuensis -0.3348395 -0.3648863
## Streptococcus_mutans -0.3348395 -0.3648863
## Oribacterium_asaccharolyticum -0.3348395 -0.3648863
## Megasphaera_micronuciformis -0.3348395 -0.3648863
## Neisseria_flavescens -0.3348395 -0.3648863
## Neisseria_subflava -0.3348395 -0.3648863
## Stenotrophomonas_maltophilia -0.3348395 -0.3648863
## Stenotrophomonas_pavanii -0.3348395 -0.3648863
## Stenotrophomonas_rhizophila -0.3348395 -0.3648863
## Bacillus_intestinalis -0.3348395 -0.3648863
## Listeria_innocua -0.3348395 -0.3648863
## Listeria_monocytogenes -0.3348395 -0.3648863
## Staphylococcus_haemolyticus 11.5886049 11.9949326
## Streptococcus_sobrinus -0.3348395 -0.3648863
## Eggerthia_catenaformis -0.3348395 -0.3648863
## Leptotrichia_sp_oral_taxon_498 -0.3348395 -0.3648863
## Rickettsia_felis -0.3348395 -0.3648863
## Haemophilus_parainfluenzae -0.3348395 -0.3648863
## Candida_orthopsilosis 11.9771145 13.3103663
## Nannocystis_exedens -0.3348395 -0.3648863
## Campylobacter_concisus -0.3348395 -0.3648863
## Franconibacter_helveticus -0.3348395 -0.3648863
## Klebsiella_pneumoniae -0.3348395 -0.3648863
## Salmonella_enterica -0.3348395 -0.3648863
## Superficieibacter_electus -0.3348395 -0.3648863
## Pseudomonas_fluorescens -0.3348395 -0.3648863
## Saccharomyces_cerevisiae -0.3348395 -0.3648863
## S._cerevisiae x S._kudriavzevii -0.3348395 -0.3648863
## Saccharomyces_kudriavzevii -0.3348395 -0.3648863
## Cryptococcus_gattii_VGI -0.3348395 -0.3648863
## Cryptococcus_gattii_VGII -0.3348395 -0.3648863
## Cryptococcus_gattii_VGIII -0.3348395 -0.3648863
## Cryptococcus_neoformans -0.3348395 -0.3648863
## Listeria_marthii -0.3348395 -0.3648863
## Erwinia_persicina -0.3348395 -0.3648863
## Pseudomonas_formosensis -0.3348395 -0.3648863
## Pseudomonas_putida -0.3348395 -0.3648863
## BAL_078_a_control BAL_074_f_qiaamp
## Actinobaculum_sp_oral_taxon_183 -0.1233793 -0.6268689
## Actinomyces_georgiae -0.1233793 -0.6268689
## Actinomyces_graevenitzii -0.1233793 -0.6268689
## Actinomyces_hongkongensis -0.1233793 -0.6268689
## Actinomyces_johnsonii -0.1233793 -0.6268689
## Actinomyces_massiliensis -0.1233793 -0.6268689
## Actinomyces_meyeri -0.1233793 -0.6268689
## Actinomyces_naeslundii -0.1233793 -0.6268689
## Actinomyces_odontolyticus -0.1233793 -0.6268689
## Actinomyces_oris -0.1233793 -0.6268689
## Actinomyces_sp_HMSC035G02 -0.1233793 -0.6268689
## Actinomyces_sp_HPA0247 -0.1233793 -0.6268689
## Actinomyces_sp_ICM47 -0.1233793 -0.6268689
## Actinomyces_sp_S6_Spd3 -0.1233793 -0.6268689
## Actinomyces_sp_oral_taxon_170 -0.1233793 -0.6268689
## Actinomyces_sp_oral_taxon_180 -0.1233793 -0.6268689
## Actinomyces_sp_oral_taxon_181 -0.1233793 4.9025602
## Actinomyces_sp_oral_taxon_414 -0.1233793 -0.6268689
## Actinomyces_sp_oral_taxon_448 -0.1233793 -0.6268689
## Actinomyces_sp_oral_taxon_897 -0.1233793 -0.6268689
## Actinomyces_viscosus -0.1233793 -0.6268689
## Aeriscardovia_aeriphila -0.1233793 -0.6268689
## Alloscardovia_omnicolens -0.1233793 -0.6268689
## Bifidobacterium_dentium -0.1233793 -0.6268689
## Bifidobacterium_longum -0.1233793 -0.6268689
## Scardovia_wiggsiae -0.1233793 4.2094131
## Corynebacterium_accolens -0.1233793 -0.6268689
## Corynebacterium_atypicum -0.1233793 -0.6268689
## Corynebacterium_durum -0.1233793 -0.6268689
## Corynebacterium_matruchotii -0.1233793 -0.6268689
## Corynebacterium_pseudodiphtheriticum -0.1233793 -0.6268689
## Corynebacterium_pseudogenitalium -0.1233793 -0.6268689
## Corynebacterium_tuberculostearicum -0.1233793 -0.6268689
## Rothia_aeria -0.1233793 -0.6268689
## Rothia_dentocariosa -0.1233793 -0.6268689
## Rothia_mucilaginosa -0.1233793 -0.6268689
## Cutibacterium_acnes -0.1233793 -0.6268689
## Cutibacterium_granulosum -0.1233793 -0.6268689
## Propionibacterium_humerusii -0.1233793 -0.6268689
## Propionibacterium_namnetense -0.1233793 -0.6268689
## Propionibacterium_acidifaciens -0.1233793 -0.6268689
## Pseudopropionibacterium_propionicum -0.1233793 -0.6268689
## Atopobium_deltae -0.1233793 -0.6268689
## Atopobium_parvulum -0.1233793 -0.6268689
## Atopobium_rimae -0.1233793 -0.6268689
## Olsenella_profusa -0.1233793 -0.6268689
## Olsenella_scatoligenes -0.1233793 -0.6268689
## Olsenella_uli -0.1233793 -0.6268689
## Collinsella_aerofaciens -0.1233793 -0.6268689
## Collinsella_intestinalis -0.1233793 -0.6268689
## Collinsella_stercoris -0.1233793 -0.6268689
## Enorma_massiliensis -0.1233793 -0.6268689
## [Collinsella]_massiliensis -0.1233793 -0.6268689
## Asaccharobacter_celatus -0.1233793 -0.6268689
## Denitrobacterium_detoxificans -0.1233793 -0.6268689
## Enterorhabdus_caecimuris -0.1233793 -0.6268689
## Slackia_exigua -0.1233793 -0.6268689
## Slackia_isoflavoniconvertens -0.1233793 -0.6268689
## Rubrobacter_radiotolerans -0.1233793 -0.6268689
## Thermoleophilum_album -0.1233793 -0.6268689
## Porphyromonas_endodontalis -0.1233793 -0.6268689
## Porphyromonas_somerae -0.1233793 -0.6268689
## Prevotella_histicola -0.1233793 -0.6268689
## Prevotella_melaninogenica -0.1233793 -0.6268689
## Prevotella_oris -0.1233793 -0.6268689
## Kouleothrix_aurantiaca -0.1233793 -0.6268689
## Hydrogenibacillus_schlegelii -0.1233793 -0.6268689
## Gemella_asaccharolytica -0.1233793 -0.6268689
## Gemella_bergeri -0.1233793 -0.6268689
## Gemella_haemolysans -0.1233793 4.8155489
## Gemella_morbillorum -0.1233793 -0.6268689
## Gemella_sanguinis -0.1233793 -0.6268689
## Brochothrix_campestris -0.1233793 -0.6268689
## Staphylococcus_argenteus -0.1233793 -0.6268689
## Staphylococcus_aureus -0.1233793 -0.6268689
## Staphylococcus_epidermidis -0.1233793 -0.6268689
## Staphylococcus_schweitzeri -0.1233793 -0.6268689
## Abiotrophia_defectiva -0.1233793 -0.6268689
## Abiotrophia_sp_HMSC24B09 -0.1233793 -0.6268689
## Dolosigranulum_pigrum -0.1233793 -0.6268689
## Granulicatella_adiacens -0.1233793 -0.6268689
## Granulicatella_elegans -0.1233793 -0.6268689
## Enterococcus_faecalis -0.1233793 -0.6268689
## Lactobacillus_rhamnosus -0.1233793 -0.6268689
## Streptococcus_anginosus -0.1233793 6.6956416
## Streptococcus_australis -0.1233793 -0.6268689
## Streptococcus_cristatus -0.1233793 -0.6268689
## Streptococcus_gordonii -0.1233793 -0.6268689
## Streptococcus_infantis -0.1233793 -0.6268689
## Streptococcus_milleri -0.1233793 -0.6268689
## Streptococcus_mitis -0.1233793 11.6910179
## Streptococcus_oralis -0.1233793 10.9986261
## Streptococcus_parasanguinis -0.1233793 5.0326134
## Streptococcus_peroris -0.1233793 -0.6268689
## Streptococcus_pneumoniae -0.1233793 13.6105305
## Streptococcus_pseudopneumoniae -0.1233793 -0.6268689
## Streptococcus_salivarius -0.1233793 -0.6268689
## Streptococcus_sanguinis -0.1233793 -0.6268689
## Streptococcus_sp_A12 -0.1233793 -0.6268689
## Streptococcus_sp_F0442 -0.1233793 -0.6268689
## Streptococcus_sp_HMSC034E03 -0.1233793 -0.6268689
## Streptococcus_sp_HMSC067H01 -0.1233793 -0.6268689
## Streptococcus_sp_HMSC071D03 -0.1233793 -0.6268689
## Streptococcus_sp_HPH0090 -0.1233793 -0.6268689
## Streptococcus_sp_M334 -0.1233793 -0.6268689
## Streptococcus_vestibularis -0.1233793 -0.6268689
## Eubacterium_brachy -0.1233793 -0.6268689
## Eubacterium_infirmum -0.1233793 -0.6268689
## Eubacterium_nodatum -0.1233793 -0.6268689
## Eubacterium_sulci -0.1233793 -0.6268689
## Mogibacterium_diversum -0.1233793 -0.6268689
## Mogibacterium_pumilum -0.1233793 -0.6268689
## Mogibacterium_timidum -0.1233793 -0.6268689
## Lachnoanaerobaculum_saburreum -0.1233793 -0.6268689
## Oribacterium_parvum -0.1233793 -0.6268689
## Oribacterium_sinus -0.1233793 -0.6268689
## Oribacterium_sp_oral_taxon_078 -0.1233793 -0.6268689
## Stomatobaculum_longum -0.1233793 -0.6268689
## Peptostreptococcus_stomatis -0.1233793 -0.6268689
## Bulleidia_extructa -0.1233793 -0.6268689
## Solobacterium_moorei -0.1233793 -0.6268689
## Limnochorda_pilosa -0.1233793 -0.6268689
## Veillonella_atypica -0.1233793 -0.6268689
## Veillonella_dispar -0.1233793 -0.6268689
## Veillonella_infantium -0.1233793 -0.6268689
## Veillonella_parvula -0.1233793 -0.6268689
## Veillonella_sp_T11011_6 -0.1233793 -0.6268689
## Anaerococcus_nagyae -0.1233793 -0.6268689
## Finegoldia_magna -0.1233793 -0.6268689
## Parvimonas_micra -0.1233793 5.9412091
## Parvimonas_sp_oral_taxon_110 -0.1233793 -0.6268689
## Parvimonas_sp_oral_taxon_393 -0.1233793 -0.6268689
## Fusobacterium_nucleatum -0.1233793 -0.6268689
## Leptotrichia_wadei -0.1233793 -0.6268689
## Gemmata_obscuriglobus -0.1233793 -0.6268689
## Paludisphaera_borealis -0.1233793 -0.6268689
## Achromobacter_xylosoxidans -0.1233793 -0.6268689
## Cupriavidus_sp 7.5201036 11.6274319
## Sutterella_parvirubra -0.1233793 4.7010073
## Anaerobiospirillum_thomasii -0.1233793 -0.6268689
## Cardiobacterium_hominis -0.1233793 -0.6268689
## Cardiobacterium_valvarum -0.1233793 -0.6268689
## Alkalilimnicola_ehrlichii -0.1233793 -0.6268689
## Escherichia_coli -0.1233793 -0.6268689
## Thiohalorhabdus_denitrificans -0.1233793 -0.6268689
## Pseudomonas_aeruginosa -0.1233793 -0.6268689
## Acholeplasma_oculi -0.1233793 -0.6268689
## Candida_albicans -0.1233793 15.0024082
## Candida_dubliniensis -0.1233793 12.2043157
## Candida_parapsilosis -0.1233793 7.0458890
## Malassezia_restricta -0.1233793 -0.6268689
## Nakamurella_silvestris -0.1233793 -0.6268689
## Alloprevotella_tannerae -0.1233793 -0.6268689
## Prevotella_jejuni -0.1233793 -0.6268689
## Prevotella_pallens -0.1233793 -0.6268689
## Prevotella_salivae -0.1233793 -0.6268689
## Prevotella_sp_oral_taxon_306 -0.1233793 -0.6268689
## Prevotella_veroralis -0.1233793 -0.6268689
## Tannerella_sp_oral_taxon_808 -0.1233793 -0.6268689
## Tannerella_sp_oral_taxon_HOT_286 -0.1233793 -0.6268689
## Capnocytophaga_gingivalis -0.1233793 -0.6268689
## Bacillus_ginsengihumi -0.1233793 -0.6268689
## Listeria_floridensis -0.1233793 -0.6268689
## Agitococcus_lubricus -0.1233793 -0.6268689
## Lactobacillus_fermentum 7.5664493 -0.6268689
## Lactobacillus_gasseri -0.1233793 -0.6268689
## Sharpea_azabuensis -0.1233793 -0.6268689
## Streptococcus_mutans -0.1233793 -0.6268689
## Oribacterium_asaccharolyticum -0.1233793 -0.6268689
## Megasphaera_micronuciformis -0.1233793 -0.6268689
## Neisseria_flavescens -0.1233793 -0.6268689
## Neisseria_subflava -0.1233793 -0.6268689
## Stenotrophomonas_maltophilia -0.1233793 -0.6268689
## Stenotrophomonas_pavanii -0.1233793 -0.6268689
## Stenotrophomonas_rhizophila -0.1233793 -0.6268689
## Bacillus_intestinalis -0.1233793 -0.6268689
## Listeria_innocua -0.1233793 -0.6268689
## Listeria_monocytogenes -0.1233793 -0.6268689
## Staphylococcus_haemolyticus 9.5893109 -0.6268689
## Streptococcus_sobrinus -0.1233793 -0.6268689
## Eggerthia_catenaformis -0.1233793 -0.6268689
## Leptotrichia_sp_oral_taxon_498 -0.1233793 -0.6268689
## Rickettsia_felis -0.1233793 -0.6268689
## Haemophilus_parainfluenzae -0.1233793 -0.6268689
## Candida_orthopsilosis -0.1233793 -0.6268689
## Nannocystis_exedens -0.1233793 -0.6268689
## Campylobacter_concisus -0.1233793 -0.6268689
## Franconibacter_helveticus -0.1233793 -0.6268689
## Klebsiella_pneumoniae -0.1233793 -0.6268689
## Salmonella_enterica -0.1233793 -0.6268689
## Superficieibacter_electus -0.1233793 -0.6268689
## Pseudomonas_fluorescens -0.1233793 -0.6268689
## Saccharomyces_cerevisiae -0.1233793 -0.6268689
## S._cerevisiae x S._kudriavzevii -0.1233793 -0.6268689
## Saccharomyces_kudriavzevii -0.1233793 -0.6268689
## Cryptococcus_gattii_VGI -0.1233793 -0.6268689
## Cryptococcus_gattii_VGII -0.1233793 -0.6268689
## Cryptococcus_gattii_VGIII -0.1233793 -0.6268689
## Cryptococcus_neoformans -0.1233793 -0.6268689
## Listeria_marthii -0.1233793 -0.6268689
## Erwinia_persicina -0.1233793 -0.6268689
## Pseudomonas_formosensis -0.1233793 -0.6268689
## Pseudomonas_putida -0.1233793 -0.6268689
## BAL_074_e_benzonase BAL_074_d_lyPMA
## Actinobaculum_sp_oral_taxon_183 -0.3211132 -0.2904462
## Actinomyces_georgiae -0.3211132 -0.2904462
## Actinomyces_graevenitzii -0.3211132 -0.2904462
## Actinomyces_hongkongensis -0.3211132 -0.2904462
## Actinomyces_johnsonii -0.3211132 -0.2904462
## Actinomyces_massiliensis -0.3211132 -0.2904462
## Actinomyces_meyeri -0.3211132 -0.2904462
## Actinomyces_naeslundii -0.3211132 -0.2904462
## Actinomyces_odontolyticus -0.3211132 -0.2904462
## Actinomyces_oris -0.3211132 -0.2904462
## Actinomyces_sp_HMSC035G02 -0.3211132 -0.2904462
## Actinomyces_sp_HPA0247 -0.3211132 -0.2904462
## Actinomyces_sp_ICM47 -0.3211132 -0.2904462
## Actinomyces_sp_S6_Spd3 -0.3211132 -0.2904462
## Actinomyces_sp_oral_taxon_170 -0.3211132 -0.2904462
## Actinomyces_sp_oral_taxon_180 -0.3211132 -0.2904462
## Actinomyces_sp_oral_taxon_181 -0.3211132 -0.2904462
## Actinomyces_sp_oral_taxon_414 -0.3211132 -0.2904462
## Actinomyces_sp_oral_taxon_448 -0.3211132 -0.2904462
## Actinomyces_sp_oral_taxon_897 -0.3211132 -0.2904462
## Actinomyces_viscosus -0.3211132 -0.2904462
## Aeriscardovia_aeriphila -0.3211132 -0.2904462
## Alloscardovia_omnicolens -0.3211132 -0.2904462
## Bifidobacterium_dentium -0.3211132 -0.2904462
## Bifidobacterium_longum -0.3211132 -0.2904462
## Scardovia_wiggsiae -0.3211132 -0.2904462
## Corynebacterium_accolens -0.3211132 -0.2904462
## Corynebacterium_atypicum -0.3211132 -0.2904462
## Corynebacterium_durum -0.3211132 -0.2904462
## Corynebacterium_matruchotii -0.3211132 -0.2904462
## Corynebacterium_pseudodiphtheriticum -0.3211132 -0.2904462
## Corynebacterium_pseudogenitalium -0.3211132 -0.2904462
## Corynebacterium_tuberculostearicum -0.3211132 -0.2904462
## Rothia_aeria -0.3211132 -0.2904462
## Rothia_dentocariosa -0.3211132 -0.2904462
## Rothia_mucilaginosa -0.3211132 -0.2904462
## Cutibacterium_acnes -0.3211132 -0.2904462
## Cutibacterium_granulosum -0.3211132 -0.2904462
## Propionibacterium_humerusii -0.3211132 -0.2904462
## Propionibacterium_namnetense -0.3211132 -0.2904462
## Propionibacterium_acidifaciens -0.3211132 -0.2904462
## Pseudopropionibacterium_propionicum -0.3211132 -0.2904462
## Atopobium_deltae -0.3211132 -0.2904462
## Atopobium_parvulum -0.3211132 -0.2904462
## Atopobium_rimae -0.3211132 -0.2904462
## Olsenella_profusa -0.3211132 -0.2904462
## Olsenella_scatoligenes -0.3211132 -0.2904462
## Olsenella_uli -0.3211132 -0.2904462
## Collinsella_aerofaciens -0.3211132 -0.2904462
## Collinsella_intestinalis -0.3211132 -0.2904462
## Collinsella_stercoris -0.3211132 -0.2904462
## Enorma_massiliensis -0.3211132 -0.2904462
## [Collinsella]_massiliensis -0.3211132 -0.2904462
## Asaccharobacter_celatus -0.3211132 -0.2904462
## Denitrobacterium_detoxificans -0.3211132 -0.2904462
## Enterorhabdus_caecimuris -0.3211132 -0.2904462
## Slackia_exigua -0.3211132 -0.2904462
## Slackia_isoflavoniconvertens -0.3211132 -0.2904462
## Rubrobacter_radiotolerans -0.3211132 -0.2904462
## Thermoleophilum_album -0.3211132 -0.2904462
## Porphyromonas_endodontalis -0.3211132 -0.2904462
## Porphyromonas_somerae -0.3211132 -0.2904462
## Prevotella_histicola -0.3211132 -0.2904462
## Prevotella_melaninogenica -0.3211132 -0.2904462
## Prevotella_oris -0.3211132 -0.2904462
## Kouleothrix_aurantiaca -0.3211132 -0.2904462
## Hydrogenibacillus_schlegelii -0.3211132 -0.2904462
## Gemella_asaccharolytica -0.3211132 -0.2904462
## Gemella_bergeri -0.3211132 -0.2904462
## Gemella_haemolysans -0.3211132 -0.2904462
## Gemella_morbillorum -0.3211132 -0.2904462
## Gemella_sanguinis -0.3211132 -0.2904462
## Brochothrix_campestris -0.3211132 -0.2904462
## Staphylococcus_argenteus -0.3211132 -0.2904462
## Staphylococcus_aureus -0.3211132 -0.2904462
## Staphylococcus_epidermidis -0.3211132 -0.2904462
## Staphylococcus_schweitzeri -0.3211132 -0.2904462
## Abiotrophia_defectiva -0.3211132 -0.2904462
## Abiotrophia_sp_HMSC24B09 -0.3211132 -0.2904462
## Dolosigranulum_pigrum -0.3211132 -0.2904462
## Granulicatella_adiacens -0.3211132 -0.2904462
## Granulicatella_elegans -0.3211132 -0.2904462
## Enterococcus_faecalis -0.3211132 -0.2904462
## Lactobacillus_rhamnosus -0.3211132 -0.2904462
## Streptococcus_anginosus -0.3211132 -0.2904462
## Streptococcus_australis -0.3211132 -0.2904462
## Streptococcus_cristatus -0.3211132 -0.2904462
## Streptococcus_gordonii -0.3211132 -0.2904462
## Streptococcus_infantis -0.3211132 -0.2904462
## Streptococcus_milleri -0.3211132 -0.2904462
## Streptococcus_mitis 10.0224985 6.2804368
## Streptococcus_oralis 9.3882434 6.1926612
## Streptococcus_parasanguinis -0.3211132 -0.2904462
## Streptococcus_peroris -0.3211132 -0.2904462
## Streptococcus_pneumoniae 12.2173340 9.5084028
## Streptococcus_pseudopneumoniae -0.3211132 -0.2904462
## Streptococcus_salivarius -0.3211132 -0.2904462
## Streptococcus_sanguinis -0.3211132 -0.2904462
## Streptococcus_sp_A12 -0.3211132 -0.2904462
## Streptococcus_sp_F0442 -0.3211132 -0.2904462
## Streptococcus_sp_HMSC034E03 -0.3211132 -0.2904462
## Streptococcus_sp_HMSC067H01 -0.3211132 -0.2904462
## Streptococcus_sp_HMSC071D03 -0.3211132 -0.2904462
## Streptococcus_sp_HPH0090 -0.3211132 -0.2904462
## Streptococcus_sp_M334 -0.3211132 -0.2904462
## Streptococcus_vestibularis -0.3211132 -0.2904462
## Eubacterium_brachy -0.3211132 -0.2904462
## Eubacterium_infirmum -0.3211132 -0.2904462
## Eubacterium_nodatum -0.3211132 -0.2904462
## Eubacterium_sulci -0.3211132 -0.2904462
## Mogibacterium_diversum -0.3211132 -0.2904462
## Mogibacterium_pumilum -0.3211132 -0.2904462
## Mogibacterium_timidum -0.3211132 -0.2904462
## Lachnoanaerobaculum_saburreum -0.3211132 -0.2904462
## Oribacterium_parvum -0.3211132 -0.2904462
## Oribacterium_sinus -0.3211132 -0.2904462
## Oribacterium_sp_oral_taxon_078 -0.3211132 -0.2904462
## Stomatobaculum_longum -0.3211132 -0.2904462
## Peptostreptococcus_stomatis -0.3211132 -0.2904462
## Bulleidia_extructa -0.3211132 -0.2904462
## Solobacterium_moorei -0.3211132 -0.2904462
## Limnochorda_pilosa -0.3211132 -0.2904462
## Veillonella_atypica -0.3211132 -0.2904462
## Veillonella_dispar -0.3211132 -0.2904462
## Veillonella_infantium -0.3211132 -0.2904462
## Veillonella_parvula -0.3211132 -0.2904462
## Veillonella_sp_T11011_6 -0.3211132 -0.2904462
## Anaerococcus_nagyae -0.3211132 -0.2904462
## Finegoldia_magna -0.3211132 -0.2904462
## Parvimonas_micra -0.3211132 -0.2904462
## Parvimonas_sp_oral_taxon_110 -0.3211132 -0.2904462
## Parvimonas_sp_oral_taxon_393 -0.3211132 -0.2904462
## Fusobacterium_nucleatum -0.3211132 -0.2904462
## Leptotrichia_wadei -0.3211132 -0.2904462
## Gemmata_obscuriglobus -0.3211132 -0.2904462
## Paludisphaera_borealis -0.3211132 -0.2904462
## Achromobacter_xylosoxidans -0.3211132 -0.2904462
## Cupriavidus_sp 9.5533060 8.4344114
## Sutterella_parvirubra -0.3211132 -0.2904462
## Anaerobiospirillum_thomasii -0.3211132 -0.2904462
## Cardiobacterium_hominis -0.3211132 -0.2904462
## Cardiobacterium_valvarum -0.3211132 -0.2904462
## Alkalilimnicola_ehrlichii -0.3211132 -0.2904462
## Escherichia_coli -0.3211132 -0.2904462
## Thiohalorhabdus_denitrificans -0.3211132 -0.2904462
## Pseudomonas_aeruginosa -0.3211132 -0.2904462
## Acholeplasma_oculi -0.3211132 -0.2904462
## Candida_albicans 12.5035690 11.5759842
## Candida_dubliniensis 9.5743422 7.9515204
## Candida_parapsilosis -0.3211132 -0.2904462
## Malassezia_restricta -0.3211132 -0.2904462
## Nakamurella_silvestris -0.3211132 -0.2904462
## Alloprevotella_tannerae -0.3211132 -0.2904462
## Prevotella_jejuni -0.3211132 -0.2904462
## Prevotella_pallens -0.3211132 -0.2904462
## Prevotella_salivae -0.3211132 -0.2904462
## Prevotella_sp_oral_taxon_306 -0.3211132 -0.2904462
## Prevotella_veroralis -0.3211132 -0.2904462
## Tannerella_sp_oral_taxon_808 -0.3211132 -0.2904462
## Tannerella_sp_oral_taxon_HOT_286 -0.3211132 -0.2904462
## Capnocytophaga_gingivalis -0.3211132 -0.2904462
## Bacillus_ginsengihumi -0.3211132 -0.2904462
## Listeria_floridensis -0.3211132 -0.2904462
## Agitococcus_lubricus -0.3211132 -0.2904462
## Lactobacillus_fermentum -0.3211132 -0.2904462
## Lactobacillus_gasseri -0.3211132 -0.2904462
## Sharpea_azabuensis -0.3211132 -0.2904462
## Streptococcus_mutans -0.3211132 -0.2904462
## Oribacterium_asaccharolyticum -0.3211132 -0.2904462
## Megasphaera_micronuciformis -0.3211132 -0.2904462
## Neisseria_flavescens -0.3211132 -0.2904462
## Neisseria_subflava -0.3211132 -0.2904462
## Stenotrophomonas_maltophilia -0.3211132 -0.2904462
## Stenotrophomonas_pavanii -0.3211132 -0.2904462
## Stenotrophomonas_rhizophila -0.3211132 -0.2904462
## Bacillus_intestinalis -0.3211132 -0.2904462
## Listeria_innocua -0.3211132 -0.2904462
## Listeria_monocytogenes -0.3211132 -0.2904462
## Staphylococcus_haemolyticus -0.3211132 -0.2904462
## Streptococcus_sobrinus -0.3211132 -0.2904462
## Eggerthia_catenaformis -0.3211132 -0.2904462
## Leptotrichia_sp_oral_taxon_498 -0.3211132 -0.2904462
## Rickettsia_felis -0.3211132 6.9840334
## Haemophilus_parainfluenzae -0.3211132 -0.2904462
## Candida_orthopsilosis -0.3211132 -0.2904462
## Nannocystis_exedens -0.3211132 -0.2904462
## Campylobacter_concisus -0.3211132 -0.2904462
## Franconibacter_helveticus -0.3211132 -0.2904462
## Klebsiella_pneumoniae -0.3211132 -0.2904462
## Salmonella_enterica -0.3211132 -0.2904462
## Superficieibacter_electus -0.3211132 -0.2904462
## Pseudomonas_fluorescens -0.3211132 -0.2904462
## Saccharomyces_cerevisiae -0.3211132 -0.2904462
## S._cerevisiae x S._kudriavzevii -0.3211132 -0.2904462
## Saccharomyces_kudriavzevii -0.3211132 -0.2904462
## Cryptococcus_gattii_VGI -0.3211132 -0.2904462
## Cryptococcus_gattii_VGII -0.3211132 -0.2904462
## Cryptococcus_gattii_VGIII -0.3211132 -0.2904462
## Cryptococcus_neoformans -0.3211132 -0.2904462
## Listeria_marthii -0.3211132 -0.2904462
## Erwinia_persicina -0.3211132 -0.2904462
## Pseudomonas_formosensis -0.3211132 -0.2904462
## Pseudomonas_putida -0.3211132 -0.2904462
## BAL_074_c_molysis BAL_074_b_host_zero
## Actinobaculum_sp_oral_taxon_183 -0.7828205 -0.5387052
## Actinomyces_georgiae -0.7828205 -0.5387052
## Actinomyces_graevenitzii -0.7828205 -0.5387052
## Actinomyces_hongkongensis -0.7828205 -0.5387052
## Actinomyces_johnsonii -0.7828205 -0.5387052
## Actinomyces_massiliensis -0.7828205 -0.5387052
## Actinomyces_meyeri -0.7828205 -0.5387052
## Actinomyces_naeslundii -0.7828205 -0.5387052
## Actinomyces_odontolyticus -0.7828205 -0.5387052
## Actinomyces_oris 6.0050245 -0.5387052
## Actinomyces_sp_HMSC035G02 -0.7828205 -0.5387052
## Actinomyces_sp_HPA0247 -0.7828205 -0.5387052
## Actinomyces_sp_ICM47 -0.7828205 -0.5387052
## Actinomyces_sp_S6_Spd3 -0.7828205 -0.5387052
## Actinomyces_sp_oral_taxon_170 -0.7828205 -0.5387052
## Actinomyces_sp_oral_taxon_180 -0.7828205 -0.5387052
## Actinomyces_sp_oral_taxon_181 5.0892973 5.0780659
## Actinomyces_sp_oral_taxon_414 -0.7828205 -0.5387052
## Actinomyces_sp_oral_taxon_448 -0.7828205 -0.5387052
## Actinomyces_sp_oral_taxon_897 -0.7828205 -0.5387052
## Actinomyces_viscosus -0.7828205 -0.5387052
## Aeriscardovia_aeriphila -0.7828205 -0.5387052
## Alloscardovia_omnicolens -0.7828205 -0.5387052
## Bifidobacterium_dentium -0.7828205 -0.5387052
## Bifidobacterium_longum -0.7828205 -0.5387052
## Scardovia_wiggsiae -0.7828205 -0.5387052
## Corynebacterium_accolens -0.7828205 -0.5387052
## Corynebacterium_atypicum -0.7828205 -0.5387052
## Corynebacterium_durum -0.7828205 -0.5387052
## Corynebacterium_matruchotii -0.7828205 -0.5387052
## Corynebacterium_pseudodiphtheriticum -0.7828205 -0.5387052
## Corynebacterium_pseudogenitalium -0.7828205 -0.5387052
## Corynebacterium_tuberculostearicum -0.7828205 -0.5387052
## Rothia_aeria -0.7828205 -0.5387052
## Rothia_dentocariosa -0.7828205 -0.5387052
## Rothia_mucilaginosa 4.9041549 -0.5387052
## Cutibacterium_acnes 8.0005758 -0.5387052
## Cutibacterium_granulosum -0.7828205 -0.5387052
## Propionibacterium_humerusii -0.7828205 -0.5387052
## Propionibacterium_namnetense 7.4636133 -0.5387052
## Propionibacterium_acidifaciens -0.7828205 -0.5387052
## Pseudopropionibacterium_propionicum -0.7828205 -0.5387052
## Atopobium_deltae -0.7828205 -0.5387052
## Atopobium_parvulum -0.7828205 -0.5387052
## Atopobium_rimae -0.7828205 -0.5387052
## Olsenella_profusa -0.7828205 -0.5387052
## Olsenella_scatoligenes -0.7828205 -0.5387052
## Olsenella_uli -0.7828205 -0.5387052
## Collinsella_aerofaciens -0.7828205 -0.5387052
## Collinsella_intestinalis -0.7828205 -0.5387052
## Collinsella_stercoris -0.7828205 -0.5387052
## Enorma_massiliensis -0.7828205 -0.5387052
## [Collinsella]_massiliensis -0.7828205 -0.5387052
## Asaccharobacter_celatus -0.7828205 -0.5387052
## Denitrobacterium_detoxificans -0.7828205 -0.5387052
## Enterorhabdus_caecimuris -0.7828205 -0.5387052
## Slackia_exigua -0.7828205 -0.5387052
## Slackia_isoflavoniconvertens -0.7828205 -0.5387052
## Rubrobacter_radiotolerans -0.7828205 -0.5387052
## Thermoleophilum_album -0.7828205 -0.5387052
## Porphyromonas_endodontalis -0.7828205 -0.5387052
## Porphyromonas_somerae -0.7828205 -0.5387052
## Prevotella_histicola -0.7828205 -0.5387052
## Prevotella_melaninogenica -0.7828205 -0.5387052
## Prevotella_oris -0.7828205 -0.5387052
## Kouleothrix_aurantiaca -0.7828205 -0.5387052
## Hydrogenibacillus_schlegelii -0.7828205 -0.5387052
## Gemella_asaccharolytica -0.7828205 -0.5387052
## Gemella_bergeri -0.7828205 -0.5387052
## Gemella_haemolysans 5.4156583 -0.5387052
## Gemella_morbillorum -0.7828205 -0.5387052
## Gemella_sanguinis -0.7828205 -0.5387052
## Brochothrix_campestris -0.7828205 -0.5387052
## Staphylococcus_argenteus -0.7828205 -0.5387052
## Staphylococcus_aureus -0.7828205 -0.5387052
## Staphylococcus_epidermidis -0.7828205 -0.5387052
## Staphylococcus_schweitzeri -0.7828205 -0.5387052
## Abiotrophia_defectiva -0.7828205 -0.5387052
## Abiotrophia_sp_HMSC24B09 -0.7828205 -0.5387052
## Dolosigranulum_pigrum -0.7828205 -0.5387052
## Granulicatella_adiacens -0.7828205 -0.5387052
## Granulicatella_elegans -0.7828205 -0.5387052
## Enterococcus_faecalis -0.7828205 -0.5387052
## Lactobacillus_rhamnosus -0.7828205 -0.5387052
## Streptococcus_anginosus 7.4305613 6.5719910
## Streptococcus_australis -0.7828205 -0.5387052
## Streptococcus_cristatus -0.7828205 -0.5387052
## Streptococcus_gordonii -0.7828205 -0.5387052
## Streptococcus_infantis -0.7828205 -0.5387052
## Streptococcus_milleri -0.7828205 -0.5387052
## Streptococcus_mitis 13.1419166 11.3200982
## Streptococcus_oralis 12.5970817 10.8930645
## Streptococcus_parasanguinis 6.3496771 -0.5387052
## Streptococcus_peroris -0.7828205 -0.5387052
## Streptococcus_pneumoniae 15.0960493 13.4333928
## Streptococcus_pseudopneumoniae -0.7828205 -0.5387052
## Streptococcus_salivarius -0.7828205 -0.5387052
## Streptococcus_sanguinis -0.7828205 -0.5387052
## Streptococcus_sp_A12 -0.7828205 -0.5387052
## Streptococcus_sp_F0442 -0.7828205 -0.5387052
## Streptococcus_sp_HMSC034E03 -0.7828205 -0.5387052
## Streptococcus_sp_HMSC067H01 -0.7828205 -0.5387052
## Streptococcus_sp_HMSC071D03 -0.7828205 -0.5387052
## Streptococcus_sp_HPH0090 -0.7828205 -0.5387052
## Streptococcus_sp_M334 -0.7828205 -0.5387052
## Streptococcus_vestibularis -0.7828205 -0.5387052
## Eubacterium_brachy -0.7828205 -0.5387052
## Eubacterium_infirmum -0.7828205 -0.5387052
## Eubacterium_nodatum -0.7828205 -0.5387052
## Eubacterium_sulci -0.7828205 -0.5387052
## Mogibacterium_diversum -0.7828205 -0.5387052
## Mogibacterium_pumilum -0.7828205 -0.5387052
## Mogibacterium_timidum -0.7828205 -0.5387052
## Lachnoanaerobaculum_saburreum -0.7828205 -0.5387052
## Oribacterium_parvum -0.7828205 -0.5387052
## Oribacterium_sinus -0.7828205 -0.5387052
## Oribacterium_sp_oral_taxon_078 -0.7828205 -0.5387052
## Stomatobaculum_longum -0.7828205 -0.5387052
## Peptostreptococcus_stomatis -0.7828205 -0.5387052
## Bulleidia_extructa -0.7828205 -0.5387052
## Solobacterium_moorei -0.7828205 -0.5387052
## Limnochorda_pilosa -0.7828205 -0.5387052
## Veillonella_atypica -0.7828205 -0.5387052
## Veillonella_dispar -0.7828205 -0.5387052
## Veillonella_infantium -0.7828205 -0.5387052
## Veillonella_parvula -0.7828205 -0.5387052
## Veillonella_sp_T11011_6 -0.7828205 -0.5387052
## Anaerococcus_nagyae -0.7828205 -0.5387052
## Finegoldia_magna -0.7828205 -0.5387052
## Parvimonas_micra 4.6332799 5.2872949
## Parvimonas_sp_oral_taxon_110 -0.7828205 -0.5387052
## Parvimonas_sp_oral_taxon_393 -0.7828205 -0.5387052
## Fusobacterium_nucleatum -0.7828205 -0.5387052
## Leptotrichia_wadei -0.7828205 -0.5387052
## Gemmata_obscuriglobus -0.7828205 -0.5387052
## Paludisphaera_borealis -0.7828205 -0.5387052
## Achromobacter_xylosoxidans -0.7828205 -0.5387052
## Cupriavidus_sp 11.3837886 11.6661517
## Sutterella_parvirubra 4.9309123 5.2389472
## Anaerobiospirillum_thomasii -0.7828205 -0.5387052
## Cardiobacterium_hominis -0.7828205 -0.5387052
## Cardiobacterium_valvarum -0.7828205 -0.5387052
## Alkalilimnicola_ehrlichii -0.7828205 -0.5387052
## Escherichia_coli -0.7828205 -0.5387052
## Thiohalorhabdus_denitrificans -0.7828205 -0.5387052
## Pseudomonas_aeruginosa -0.7828205 -0.5387052
## Acholeplasma_oculi -0.7828205 -0.5387052
## Candida_albicans 14.6104237 14.9683083
## Candida_dubliniensis 11.8288206 12.2197659
## Candida_parapsilosis 6.7237713 6.7543125
## Malassezia_restricta -0.7828205 -0.5387052
## Nakamurella_silvestris -0.7828205 -0.5387052
## Alloprevotella_tannerae -0.7828205 -0.5387052
## Prevotella_jejuni -0.7828205 -0.5387052
## Prevotella_pallens -0.7828205 -0.5387052
## Prevotella_salivae -0.7828205 -0.5387052
## Prevotella_sp_oral_taxon_306 -0.7828205 -0.5387052
## Prevotella_veroralis -0.7828205 -0.5387052
## Tannerella_sp_oral_taxon_808 -0.7828205 -0.5387052
## Tannerella_sp_oral_taxon_HOT_286 -0.7828205 -0.5387052
## Capnocytophaga_gingivalis -0.7828205 -0.5387052
## Bacillus_ginsengihumi -0.7828205 -0.5387052
## Listeria_floridensis -0.7828205 -0.5387052
## Agitococcus_lubricus -0.7828205 -0.5387052
## Lactobacillus_fermentum -0.7828205 -0.5387052
## Lactobacillus_gasseri -0.7828205 -0.5387052
## Sharpea_azabuensis -0.7828205 -0.5387052
## Streptococcus_mutans -0.7828205 -0.5387052
## Oribacterium_asaccharolyticum -0.7828205 -0.5387052
## Megasphaera_micronuciformis -0.7828205 -0.5387052
## Neisseria_flavescens -0.7828205 -0.5387052
## Neisseria_subflava -0.7828205 -0.5387052
## Stenotrophomonas_maltophilia -0.7828205 -0.5387052
## Stenotrophomonas_pavanii -0.7828205 -0.5387052
## Stenotrophomonas_rhizophila -0.7828205 -0.5387052
## Bacillus_intestinalis -0.7828205 -0.5387052
## Listeria_innocua -0.7828205 -0.5387052
## Listeria_monocytogenes -0.7828205 -0.5387052
## Staphylococcus_haemolyticus -0.7828205 -0.5387052
## Streptococcus_sobrinus -0.7828205 -0.5387052
## Eggerthia_catenaformis -0.7828205 -0.5387052
## Leptotrichia_sp_oral_taxon_498 -0.7828205 -0.5387052
## Rickettsia_felis -0.7828205 -0.5387052
## Haemophilus_parainfluenzae -0.7828205 -0.5387052
## Candida_orthopsilosis -0.7828205 -0.5387052
## Nannocystis_exedens -0.7828205 -0.5387052
## Campylobacter_concisus -0.7828205 -0.5387052
## Franconibacter_helveticus -0.7828205 -0.5387052
## Klebsiella_pneumoniae -0.7828205 -0.5387052
## Salmonella_enterica -0.7828205 -0.5387052
## Superficieibacter_electus -0.7828205 -0.5387052
## Pseudomonas_fluorescens -0.7828205 -0.5387052
## Saccharomyces_cerevisiae -0.7828205 -0.5387052
## S._cerevisiae x S._kudriavzevii -0.7828205 -0.5387052
## Saccharomyces_kudriavzevii -0.7828205 -0.5387052
## Cryptococcus_gattii_VGI -0.7828205 -0.5387052
## Cryptococcus_gattii_VGII -0.7828205 -0.5387052
## Cryptococcus_gattii_VGIII -0.7828205 -0.5387052
## Cryptococcus_neoformans -0.7828205 -0.5387052
## Listeria_marthii -0.7828205 -0.5387052
## Erwinia_persicina -0.7828205 -0.5387052
## Pseudomonas_formosensis -0.7828205 -0.5387052
## Pseudomonas_putida -0.7828205 -0.5387052
## BAL_074_a_control BAL_073_f_qiaamp
## Actinobaculum_sp_oral_taxon_183 -0.1107382 -0.1204617
## Actinomyces_georgiae -0.1107382 -0.1204617
## Actinomyces_graevenitzii -0.1107382 -0.1204617
## Actinomyces_hongkongensis -0.1107382 -0.1204617
## Actinomyces_johnsonii -0.1107382 -0.1204617
## Actinomyces_massiliensis -0.1107382 -0.1204617
## Actinomyces_meyeri -0.1107382 -0.1204617
## Actinomyces_naeslundii -0.1107382 -0.1204617
## Actinomyces_odontolyticus -0.1107382 -0.1204617
## Actinomyces_oris -0.1107382 -0.1204617
## Actinomyces_sp_HMSC035G02 -0.1107382 -0.1204617
## Actinomyces_sp_HPA0247 -0.1107382 -0.1204617
## Actinomyces_sp_ICM47 -0.1107382 -0.1204617
## Actinomyces_sp_S6_Spd3 -0.1107382 -0.1204617
## Actinomyces_sp_oral_taxon_170 -0.1107382 -0.1204617
## Actinomyces_sp_oral_taxon_180 -0.1107382 -0.1204617
## Actinomyces_sp_oral_taxon_181 -0.1107382 -0.1204617
## Actinomyces_sp_oral_taxon_414 -0.1107382 -0.1204617
## Actinomyces_sp_oral_taxon_448 -0.1107382 -0.1204617
## Actinomyces_sp_oral_taxon_897 -0.1107382 -0.1204617
## Actinomyces_viscosus -0.1107382 -0.1204617
## Aeriscardovia_aeriphila -0.1107382 -0.1204617
## Alloscardovia_omnicolens -0.1107382 -0.1204617
## Bifidobacterium_dentium -0.1107382 -0.1204617
## Bifidobacterium_longum -0.1107382 -0.1204617
## Scardovia_wiggsiae -0.1107382 -0.1204617
## Corynebacterium_accolens -0.1107382 -0.1204617
## Corynebacterium_atypicum -0.1107382 -0.1204617
## Corynebacterium_durum -0.1107382 -0.1204617
## Corynebacterium_matruchotii -0.1107382 -0.1204617
## Corynebacterium_pseudodiphtheriticum -0.1107382 -0.1204617
## Corynebacterium_pseudogenitalium -0.1107382 -0.1204617
## Corynebacterium_tuberculostearicum -0.1107382 -0.1204617
## Rothia_aeria -0.1107382 -0.1204617
## Rothia_dentocariosa -0.1107382 -0.1204617
## Rothia_mucilaginosa -0.1107382 -0.1204617
## Cutibacterium_acnes -0.1107382 -0.1204617
## Cutibacterium_granulosum -0.1107382 -0.1204617
## Propionibacterium_humerusii -0.1107382 -0.1204617
## Propionibacterium_namnetense -0.1107382 -0.1204617
## Propionibacterium_acidifaciens -0.1107382 -0.1204617
## Pseudopropionibacterium_propionicum -0.1107382 -0.1204617
## Atopobium_deltae -0.1107382 -0.1204617
## Atopobium_parvulum -0.1107382 -0.1204617
## Atopobium_rimae -0.1107382 -0.1204617
## Olsenella_profusa -0.1107382 -0.1204617
## Olsenella_scatoligenes -0.1107382 -0.1204617
## Olsenella_uli -0.1107382 -0.1204617
## Collinsella_aerofaciens -0.1107382 -0.1204617
## Collinsella_intestinalis -0.1107382 -0.1204617
## Collinsella_stercoris -0.1107382 -0.1204617
## Enorma_massiliensis -0.1107382 -0.1204617
## [Collinsella]_massiliensis -0.1107382 -0.1204617
## Asaccharobacter_celatus -0.1107382 -0.1204617
## Denitrobacterium_detoxificans -0.1107382 -0.1204617
## Enterorhabdus_caecimuris -0.1107382 -0.1204617
## Slackia_exigua -0.1107382 -0.1204617
## Slackia_isoflavoniconvertens -0.1107382 -0.1204617
## Rubrobacter_radiotolerans -0.1107382 -0.1204617
## Thermoleophilum_album -0.1107382 -0.1204617
## Porphyromonas_endodontalis -0.1107382 -0.1204617
## Porphyromonas_somerae -0.1107382 -0.1204617
## Prevotella_histicola -0.1107382 -0.1204617
## Prevotella_melaninogenica -0.1107382 -0.1204617
## Prevotella_oris -0.1107382 -0.1204617
## Kouleothrix_aurantiaca -0.1107382 -0.1204617
## Hydrogenibacillus_schlegelii -0.1107382 -0.1204617
## Gemella_asaccharolytica -0.1107382 -0.1204617
## Gemella_bergeri -0.1107382 -0.1204617
## Gemella_haemolysans -0.1107382 -0.1204617
## Gemella_morbillorum -0.1107382 -0.1204617
## Gemella_sanguinis -0.1107382 -0.1204617
## Brochothrix_campestris -0.1107382 -0.1204617
## Staphylococcus_argenteus -0.1107382 -0.1204617
## Staphylococcus_aureus -0.1107382 -0.1204617
## Staphylococcus_epidermidis -0.1107382 -0.1204617
## Staphylococcus_schweitzeri -0.1107382 -0.1204617
## Abiotrophia_defectiva -0.1107382 -0.1204617
## Abiotrophia_sp_HMSC24B09 -0.1107382 -0.1204617
## Dolosigranulum_pigrum -0.1107382 -0.1204617
## Granulicatella_adiacens -0.1107382 -0.1204617
## Granulicatella_elegans -0.1107382 -0.1204617
## Enterococcus_faecalis -0.1107382 -0.1204617
## Lactobacillus_rhamnosus -0.1107382 -0.1204617
## Streptococcus_anginosus -0.1107382 -0.1204617
## Streptococcus_australis -0.1107382 -0.1204617
## Streptococcus_cristatus -0.1107382 -0.1204617
## Streptococcus_gordonii -0.1107382 -0.1204617
## Streptococcus_infantis -0.1107382 -0.1204617
## Streptococcus_milleri -0.1107382 -0.1204617
## Streptococcus_mitis 6.7603531 -0.1204617
## Streptococcus_oralis 6.3950459 -0.1204617
## Streptococcus_parasanguinis -0.1107382 -0.1204617
## Streptococcus_peroris -0.1107382 -0.1204617
## Streptococcus_pneumoniae 8.9922397 -0.1204617
## Streptococcus_pseudopneumoniae -0.1107382 -0.1204617
## Streptococcus_salivarius -0.1107382 -0.1204617
## Streptococcus_sanguinis -0.1107382 -0.1204617
## Streptococcus_sp_A12 -0.1107382 -0.1204617
## Streptococcus_sp_F0442 -0.1107382 -0.1204617
## Streptococcus_sp_HMSC034E03 -0.1107382 -0.1204617
## Streptococcus_sp_HMSC067H01 -0.1107382 -0.1204617
## Streptococcus_sp_HMSC071D03 -0.1107382 -0.1204617
## Streptococcus_sp_HPH0090 -0.1107382 -0.1204617
## Streptococcus_sp_M334 -0.1107382 -0.1204617
## Streptococcus_vestibularis -0.1107382 -0.1204617
## Eubacterium_brachy -0.1107382 -0.1204617
## Eubacterium_infirmum -0.1107382 -0.1204617
## Eubacterium_nodatum -0.1107382 -0.1204617
## Eubacterium_sulci -0.1107382 -0.1204617
## Mogibacterium_diversum -0.1107382 -0.1204617
## Mogibacterium_pumilum -0.1107382 -0.1204617
## Mogibacterium_timidum -0.1107382 -0.1204617
## Lachnoanaerobaculum_saburreum -0.1107382 -0.1204617
## Oribacterium_parvum -0.1107382 -0.1204617
## Oribacterium_sinus -0.1107382 -0.1204617
## Oribacterium_sp_oral_taxon_078 -0.1107382 -0.1204617
## Stomatobaculum_longum -0.1107382 -0.1204617
## Peptostreptococcus_stomatis -0.1107382 -0.1204617
## Bulleidia_extructa -0.1107382 -0.1204617
## Solobacterium_moorei -0.1107382 -0.1204617
## Limnochorda_pilosa -0.1107382 -0.1204617
## Veillonella_atypica -0.1107382 -0.1204617
## Veillonella_dispar -0.1107382 -0.1204617
## Veillonella_infantium -0.1107382 -0.1204617
## Veillonella_parvula -0.1107382 -0.1204617
## Veillonella_sp_T11011_6 -0.1107382 -0.1204617
## Anaerococcus_nagyae -0.1107382 -0.1204617
## Finegoldia_magna -0.1107382 -0.1204617
## Parvimonas_micra -0.1107382 -0.1204617
## Parvimonas_sp_oral_taxon_110 -0.1107382 -0.1204617
## Parvimonas_sp_oral_taxon_393 -0.1107382 -0.1204617
## Fusobacterium_nucleatum -0.1107382 -0.1204617
## Leptotrichia_wadei -0.1107382 -0.1204617
## Gemmata_obscuriglobus -0.1107382 -0.1204617
## Paludisphaera_borealis -0.1107382 -0.1204617
## Achromobacter_xylosoxidans -0.1107382 -0.1204617
## Cupriavidus_sp -0.1107382 10.5895240
## Sutterella_parvirubra -0.1107382 -0.1204617
## Anaerobiospirillum_thomasii -0.1107382 -0.1204617
## Cardiobacterium_hominis -0.1107382 -0.1204617
## Cardiobacterium_valvarum -0.1107382 -0.1204617
## Alkalilimnicola_ehrlichii -0.1107382 -0.1204617
## Escherichia_coli -0.1107382 -0.1204617
## Thiohalorhabdus_denitrificans -0.1107382 -0.1204617
## Pseudomonas_aeruginosa -0.1107382 4.1699977
## Acholeplasma_oculi -0.1107382 -0.1204617
## Candida_albicans -0.1107382 -0.1204617
## Candida_dubliniensis -0.1107382 9.3328248
## Candida_parapsilosis -0.1107382 -0.1204617
## Malassezia_restricta -0.1107382 -0.1204617
## Nakamurella_silvestris -0.1107382 -0.1204617
## Alloprevotella_tannerae -0.1107382 -0.1204617
## Prevotella_jejuni -0.1107382 -0.1204617
## Prevotella_pallens -0.1107382 -0.1204617
## Prevotella_salivae -0.1107382 -0.1204617
## Prevotella_sp_oral_taxon_306 -0.1107382 -0.1204617
## Prevotella_veroralis -0.1107382 -0.1204617
## Tannerella_sp_oral_taxon_808 -0.1107382 -0.1204617
## Tannerella_sp_oral_taxon_HOT_286 -0.1107382 -0.1204617
## Capnocytophaga_gingivalis -0.1107382 -0.1204617
## Bacillus_ginsengihumi -0.1107382 -0.1204617
## Listeria_floridensis -0.1107382 -0.1204617
## Agitococcus_lubricus -0.1107382 -0.1204617
## Lactobacillus_fermentum -0.1107382 -0.1204617
## Lactobacillus_gasseri -0.1107382 -0.1204617
## Sharpea_azabuensis -0.1107382 -0.1204617
## Streptococcus_mutans -0.1107382 -0.1204617
## Oribacterium_asaccharolyticum -0.1107382 -0.1204617
## Megasphaera_micronuciformis -0.1107382 -0.1204617
## Neisseria_flavescens -0.1107382 -0.1204617
## Neisseria_subflava -0.1107382 -0.1204617
## Stenotrophomonas_maltophilia -0.1107382 -0.1204617
## Stenotrophomonas_pavanii -0.1107382 -0.1204617
## Stenotrophomonas_rhizophila -0.1107382 -0.1204617
## Bacillus_intestinalis -0.1107382 -0.1204617
## Listeria_innocua -0.1107382 -0.1204617
## Listeria_monocytogenes -0.1107382 -0.1204617
## Staphylococcus_haemolyticus -0.1107382 -0.1204617
## Streptococcus_sobrinus -0.1107382 -0.1204617
## Eggerthia_catenaformis -0.1107382 -0.1204617
## Leptotrichia_sp_oral_taxon_498 -0.1107382 -0.1204617
## Rickettsia_felis -0.1107382 -0.1204617
## Haemophilus_parainfluenzae -0.1107382 -0.1204617
## Candida_orthopsilosis -0.1107382 -0.1204617
## Nannocystis_exedens -0.1107382 -0.1204617
## Campylobacter_concisus -0.1107382 -0.1204617
## Franconibacter_helveticus -0.1107382 -0.1204617
## Klebsiella_pneumoniae -0.1107382 -0.1204617
## Salmonella_enterica -0.1107382 -0.1204617
## Superficieibacter_electus -0.1107382 -0.1204617
## Pseudomonas_fluorescens -0.1107382 -0.1204617
## Saccharomyces_cerevisiae -0.1107382 -0.1204617
## S._cerevisiae x S._kudriavzevii -0.1107382 -0.1204617
## Saccharomyces_kudriavzevii -0.1107382 -0.1204617
## Cryptococcus_gattii_VGI -0.1107382 -0.1204617
## Cryptococcus_gattii_VGII -0.1107382 -0.1204617
## Cryptococcus_gattii_VGIII -0.1107382 -0.1204617
## Cryptococcus_neoformans -0.1107382 -0.1204617
## Listeria_marthii -0.1107382 -0.1204617
## Erwinia_persicina -0.1107382 -0.1204617
## Pseudomonas_formosensis -0.1107382 -0.1204617
## Pseudomonas_putida -0.1107382 -0.1204617
## BAL_073_e_benzonase BAL_073_d_lyPMA
## Actinobaculum_sp_oral_taxon_183 -0.1553288 -0.1331128
## Actinomyces_georgiae -0.1553288 -0.1331128
## Actinomyces_graevenitzii -0.1553288 -0.1331128
## Actinomyces_hongkongensis -0.1553288 -0.1331128
## Actinomyces_johnsonii -0.1553288 -0.1331128
## Actinomyces_massiliensis -0.1553288 -0.1331128
## Actinomyces_meyeri -0.1553288 -0.1331128
## Actinomyces_naeslundii -0.1553288 -0.1331128
## Actinomyces_odontolyticus -0.1553288 -0.1331128
## Actinomyces_oris -0.1553288 -0.1331128
## Actinomyces_sp_HMSC035G02 -0.1553288 -0.1331128
## Actinomyces_sp_HPA0247 -0.1553288 -0.1331128
## Actinomyces_sp_ICM47 -0.1553288 -0.1331128
## Actinomyces_sp_S6_Spd3 -0.1553288 -0.1331128
## Actinomyces_sp_oral_taxon_170 -0.1553288 -0.1331128
## Actinomyces_sp_oral_taxon_180 -0.1553288 -0.1331128
## Actinomyces_sp_oral_taxon_181 -0.1553288 -0.1331128
## Actinomyces_sp_oral_taxon_414 -0.1553288 -0.1331128
## Actinomyces_sp_oral_taxon_448 -0.1553288 -0.1331128
## Actinomyces_sp_oral_taxon_897 -0.1553288 -0.1331128
## Actinomyces_viscosus -0.1553288 -0.1331128
## Aeriscardovia_aeriphila -0.1553288 -0.1331128
## Alloscardovia_omnicolens -0.1553288 -0.1331128
## Bifidobacterium_dentium -0.1553288 -0.1331128
## Bifidobacterium_longum -0.1553288 -0.1331128
## Scardovia_wiggsiae -0.1553288 -0.1331128
## Corynebacterium_accolens -0.1553288 -0.1331128
## Corynebacterium_atypicum -0.1553288 -0.1331128
## Corynebacterium_durum -0.1553288 -0.1331128
## Corynebacterium_matruchotii -0.1553288 -0.1331128
## Corynebacterium_pseudodiphtheriticum -0.1553288 -0.1331128
## Corynebacterium_pseudogenitalium -0.1553288 -0.1331128
## Corynebacterium_tuberculostearicum -0.1553288 -0.1331128
## Rothia_aeria -0.1553288 -0.1331128
## Rothia_dentocariosa -0.1553288 -0.1331128
## Rothia_mucilaginosa -0.1553288 -0.1331128
## Cutibacterium_acnes -0.1553288 -0.1331128
## Cutibacterium_granulosum -0.1553288 -0.1331128
## Propionibacterium_humerusii -0.1553288 -0.1331128
## Propionibacterium_namnetense -0.1553288 -0.1331128
## Propionibacterium_acidifaciens -0.1553288 -0.1331128
## Pseudopropionibacterium_propionicum -0.1553288 -0.1331128
## Atopobium_deltae -0.1553288 -0.1331128
## Atopobium_parvulum -0.1553288 -0.1331128
## Atopobium_rimae -0.1553288 -0.1331128
## Olsenella_profusa -0.1553288 -0.1331128
## Olsenella_scatoligenes -0.1553288 -0.1331128
## Olsenella_uli -0.1553288 -0.1331128
## Collinsella_aerofaciens -0.1553288 -0.1331128
## Collinsella_intestinalis -0.1553288 -0.1331128
## Collinsella_stercoris -0.1553288 -0.1331128
## Enorma_massiliensis -0.1553288 -0.1331128
## [Collinsella]_massiliensis -0.1553288 -0.1331128
## Asaccharobacter_celatus -0.1553288 -0.1331128
## Denitrobacterium_detoxificans -0.1553288 -0.1331128
## Enterorhabdus_caecimuris -0.1553288 -0.1331128
## Slackia_exigua -0.1553288 -0.1331128
## Slackia_isoflavoniconvertens -0.1553288 -0.1331128
## Rubrobacter_radiotolerans -0.1553288 -0.1331128
## Thermoleophilum_album -0.1553288 -0.1331128
## Porphyromonas_endodontalis -0.1553288 -0.1331128
## Porphyromonas_somerae -0.1553288 -0.1331128
## Prevotella_histicola -0.1553288 -0.1331128
## Prevotella_melaninogenica -0.1553288 -0.1331128
## Prevotella_oris -0.1553288 -0.1331128
## Kouleothrix_aurantiaca -0.1553288 -0.1331128
## Hydrogenibacillus_schlegelii -0.1553288 -0.1331128
## Gemella_asaccharolytica -0.1553288 -0.1331128
## Gemella_bergeri -0.1553288 -0.1331128
## Gemella_haemolysans -0.1553288 -0.1331128
## Gemella_morbillorum -0.1553288 -0.1331128
## Gemella_sanguinis -0.1553288 -0.1331128
## Brochothrix_campestris -0.1553288 -0.1331128
## Staphylococcus_argenteus -0.1553288 -0.1331128
## Staphylococcus_aureus -0.1553288 -0.1331128
## Staphylococcus_epidermidis -0.1553288 -0.1331128
## Staphylococcus_schweitzeri -0.1553288 -0.1331128
## Abiotrophia_defectiva -0.1553288 -0.1331128
## Abiotrophia_sp_HMSC24B09 -0.1553288 -0.1331128
## Dolosigranulum_pigrum -0.1553288 -0.1331128
## Granulicatella_adiacens -0.1553288 -0.1331128
## Granulicatella_elegans -0.1553288 -0.1331128
## Enterococcus_faecalis -0.1553288 -0.1331128
## Lactobacillus_rhamnosus -0.1553288 -0.1331128
## Streptococcus_anginosus -0.1553288 -0.1331128
## Streptococcus_australis -0.1553288 -0.1331128
## Streptococcus_cristatus -0.1553288 -0.1331128
## Streptococcus_gordonii -0.1553288 -0.1331128
## Streptococcus_infantis -0.1553288 -0.1331128
## Streptococcus_milleri -0.1553288 -0.1331128
## Streptococcus_mitis -0.1553288 -0.1331128
## Streptococcus_oralis -0.1553288 -0.1331128
## Streptococcus_parasanguinis -0.1553288 -0.1331128
## Streptococcus_peroris -0.1553288 -0.1331128
## Streptococcus_pneumoniae -0.1553288 -0.1331128
## Streptococcus_pseudopneumoniae -0.1553288 -0.1331128
## Streptococcus_salivarius -0.1553288 -0.1331128
## Streptococcus_sanguinis -0.1553288 -0.1331128
## Streptococcus_sp_A12 -0.1553288 -0.1331128
## Streptococcus_sp_F0442 -0.1553288 -0.1331128
## Streptococcus_sp_HMSC034E03 -0.1553288 -0.1331128
## Streptococcus_sp_HMSC067H01 -0.1553288 -0.1331128
## Streptococcus_sp_HMSC071D03 -0.1553288 -0.1331128
## Streptococcus_sp_HPH0090 -0.1553288 -0.1331128
## Streptococcus_sp_M334 -0.1553288 -0.1331128
## Streptococcus_vestibularis -0.1553288 -0.1331128
## Eubacterium_brachy -0.1553288 -0.1331128
## Eubacterium_infirmum -0.1553288 -0.1331128
## Eubacterium_nodatum -0.1553288 -0.1331128
## Eubacterium_sulci -0.1553288 -0.1331128
## Mogibacterium_diversum -0.1553288 -0.1331128
## Mogibacterium_pumilum -0.1553288 -0.1331128
## Mogibacterium_timidum -0.1553288 -0.1331128
## Lachnoanaerobaculum_saburreum -0.1553288 -0.1331128
## Oribacterium_parvum -0.1553288 -0.1331128
## Oribacterium_sinus -0.1553288 -0.1331128
## Oribacterium_sp_oral_taxon_078 -0.1553288 -0.1331128
## Stomatobaculum_longum -0.1553288 -0.1331128
## Peptostreptococcus_stomatis -0.1553288 -0.1331128
## Bulleidia_extructa -0.1553288 -0.1331128
## Solobacterium_moorei -0.1553288 -0.1331128
## Limnochorda_pilosa -0.1553288 -0.1331128
## Veillonella_atypica -0.1553288 -0.1331128
## Veillonella_dispar -0.1553288 -0.1331128
## Veillonella_infantium -0.1553288 -0.1331128
## Veillonella_parvula -0.1553288 -0.1331128
## Veillonella_sp_T11011_6 -0.1553288 -0.1331128
## Anaerococcus_nagyae -0.1553288 -0.1331128
## Finegoldia_magna -0.1553288 -0.1331128
## Parvimonas_micra -0.1553288 -0.1331128
## Parvimonas_sp_oral_taxon_110 -0.1553288 -0.1331128
## Parvimonas_sp_oral_taxon_393 -0.1553288 -0.1331128
## Fusobacterium_nucleatum -0.1553288 -0.1331128
## Leptotrichia_wadei -0.1553288 -0.1331128
## Gemmata_obscuriglobus -0.1553288 -0.1331128
## Paludisphaera_borealis -0.1553288 -0.1331128
## Achromobacter_xylosoxidans -0.1553288 -0.1331128
## Cupriavidus_sp 12.2160210 12.3687850
## Sutterella_parvirubra 5.8260854 6.1603065
## Anaerobiospirillum_thomasii -0.1553288 -0.1331128
## Cardiobacterium_hominis -0.1553288 -0.1331128
## Cardiobacterium_valvarum -0.1553288 -0.1331128
## Alkalilimnicola_ehrlichii -0.1553288 -0.1331128
## Escherichia_coli -0.1553288 -0.1331128
## Thiohalorhabdus_denitrificans -0.1553288 -0.1331128
## Pseudomonas_aeruginosa 6.9529153 -0.1331128
## Acholeplasma_oculi -0.1553288 -0.1331128
## Candida_albicans -0.1553288 -0.1331128
## Candida_dubliniensis 5.9154089 8.0934607
## Candida_parapsilosis -0.1553288 -0.1331128
## Malassezia_restricta -0.1553288 -0.1331128
## Nakamurella_silvestris -0.1553288 -0.1331128
## Alloprevotella_tannerae -0.1553288 -0.1331128
## Prevotella_jejuni -0.1553288 -0.1331128
## Prevotella_pallens -0.1553288 -0.1331128
## Prevotella_salivae -0.1553288 -0.1331128
## Prevotella_sp_oral_taxon_306 -0.1553288 -0.1331128
## Prevotella_veroralis -0.1553288 -0.1331128
## Tannerella_sp_oral_taxon_808 -0.1553288 -0.1331128
## Tannerella_sp_oral_taxon_HOT_286 -0.1553288 -0.1331128
## Capnocytophaga_gingivalis -0.1553288 -0.1331128
## Bacillus_ginsengihumi -0.1553288 -0.1331128
## Listeria_floridensis -0.1553288 -0.1331128
## Agitococcus_lubricus -0.1553288 -0.1331128
## Lactobacillus_fermentum -0.1553288 -0.1331128
## Lactobacillus_gasseri -0.1553288 -0.1331128
## Sharpea_azabuensis -0.1553288 -0.1331128
## Streptococcus_mutans -0.1553288 -0.1331128
## Oribacterium_asaccharolyticum -0.1553288 -0.1331128
## Megasphaera_micronuciformis -0.1553288 -0.1331128
## Neisseria_flavescens -0.1553288 -0.1331128
## Neisseria_subflava -0.1553288 -0.1331128
## Stenotrophomonas_maltophilia -0.1553288 -0.1331128
## Stenotrophomonas_pavanii -0.1553288 -0.1331128
## Stenotrophomonas_rhizophila -0.1553288 -0.1331128
## Bacillus_intestinalis -0.1553288 -0.1331128
## Listeria_innocua -0.1553288 -0.1331128
## Listeria_monocytogenes -0.1553288 -0.1331128
## Staphylococcus_haemolyticus -0.1553288 -0.1331128
## Streptococcus_sobrinus -0.1553288 -0.1331128
## Eggerthia_catenaformis -0.1553288 -0.1331128
## Leptotrichia_sp_oral_taxon_498 -0.1553288 -0.1331128
## Rickettsia_felis -0.1553288 -0.1331128
## Haemophilus_parainfluenzae -0.1553288 -0.1331128
## Candida_orthopsilosis -0.1553288 -0.1331128
## Nannocystis_exedens -0.1553288 -0.1331128
## Campylobacter_concisus -0.1553288 -0.1331128
## Franconibacter_helveticus -0.1553288 -0.1331128
## Klebsiella_pneumoniae -0.1553288 -0.1331128
## Salmonella_enterica -0.1553288 -0.1331128
## Superficieibacter_electus -0.1553288 -0.1331128
## Pseudomonas_fluorescens -0.1553288 -0.1331128
## Saccharomyces_cerevisiae -0.1553288 -0.1331128
## S._cerevisiae x S._kudriavzevii -0.1553288 -0.1331128
## Saccharomyces_kudriavzevii -0.1553288 -0.1331128
## Cryptococcus_gattii_VGI -0.1553288 -0.1331128
## Cryptococcus_gattii_VGII -0.1553288 -0.1331128
## Cryptococcus_gattii_VGIII -0.1553288 -0.1331128
## Cryptococcus_neoformans -0.1553288 -0.1331128
## Listeria_marthii -0.1553288 -0.1331128
## Erwinia_persicina -0.1553288 -0.1331128
## Pseudomonas_formosensis -0.1553288 -0.1331128
## Pseudomonas_putida -0.1553288 -0.1331128
## BAL_073_c_molysis BAL_073_b_host_zero
## Actinobaculum_sp_oral_taxon_183 -0.1352053 -0.1353243
## Actinomyces_georgiae -0.1352053 -0.1353243
## Actinomyces_graevenitzii -0.1352053 -0.1353243
## Actinomyces_hongkongensis -0.1352053 -0.1353243
## Actinomyces_johnsonii -0.1352053 -0.1353243
## Actinomyces_massiliensis -0.1352053 -0.1353243
## Actinomyces_meyeri -0.1352053 -0.1353243
## Actinomyces_naeslundii -0.1352053 -0.1353243
## Actinomyces_odontolyticus -0.1352053 -0.1353243
## Actinomyces_oris -0.1352053 -0.1353243
## Actinomyces_sp_HMSC035G02 -0.1352053 -0.1353243
## Actinomyces_sp_HPA0247 -0.1352053 -0.1353243
## Actinomyces_sp_ICM47 -0.1352053 -0.1353243
## Actinomyces_sp_S6_Spd3 -0.1352053 -0.1353243
## Actinomyces_sp_oral_taxon_170 -0.1352053 -0.1353243
## Actinomyces_sp_oral_taxon_180 -0.1352053 -0.1353243
## Actinomyces_sp_oral_taxon_181 -0.1352053 -0.1353243
## Actinomyces_sp_oral_taxon_414 -0.1352053 -0.1353243
## Actinomyces_sp_oral_taxon_448 -0.1352053 -0.1353243
## Actinomyces_sp_oral_taxon_897 -0.1352053 -0.1353243
## Actinomyces_viscosus -0.1352053 -0.1353243
## Aeriscardovia_aeriphila -0.1352053 -0.1353243
## Alloscardovia_omnicolens -0.1352053 -0.1353243
## Bifidobacterium_dentium -0.1352053 -0.1353243
## Bifidobacterium_longum -0.1352053 -0.1353243
## Scardovia_wiggsiae -0.1352053 -0.1353243
## Corynebacterium_accolens -0.1352053 -0.1353243
## Corynebacterium_atypicum -0.1352053 -0.1353243
## Corynebacterium_durum -0.1352053 -0.1353243
## Corynebacterium_matruchotii -0.1352053 -0.1353243
## Corynebacterium_pseudodiphtheriticum -0.1352053 -0.1353243
## Corynebacterium_pseudogenitalium -0.1352053 -0.1353243
## Corynebacterium_tuberculostearicum -0.1352053 -0.1353243
## Rothia_aeria -0.1352053 -0.1353243
## Rothia_dentocariosa -0.1352053 -0.1353243
## Rothia_mucilaginosa -0.1352053 -0.1353243
## Cutibacterium_acnes -0.1352053 -0.1353243
## Cutibacterium_granulosum -0.1352053 -0.1353243
## Propionibacterium_humerusii -0.1352053 -0.1353243
## Propionibacterium_namnetense -0.1352053 -0.1353243
## Propionibacterium_acidifaciens -0.1352053 -0.1353243
## Pseudopropionibacterium_propionicum -0.1352053 -0.1353243
## Atopobium_deltae -0.1352053 -0.1353243
## Atopobium_parvulum -0.1352053 -0.1353243
## Atopobium_rimae -0.1352053 -0.1353243
## Olsenella_profusa -0.1352053 -0.1353243
## Olsenella_scatoligenes -0.1352053 -0.1353243
## Olsenella_uli -0.1352053 -0.1353243
## Collinsella_aerofaciens -0.1352053 -0.1353243
## Collinsella_intestinalis -0.1352053 -0.1353243
## Collinsella_stercoris -0.1352053 -0.1353243
## Enorma_massiliensis -0.1352053 -0.1353243
## [Collinsella]_massiliensis -0.1352053 -0.1353243
## Asaccharobacter_celatus -0.1352053 -0.1353243
## Denitrobacterium_detoxificans -0.1352053 -0.1353243
## Enterorhabdus_caecimuris -0.1352053 -0.1353243
## Slackia_exigua -0.1352053 -0.1353243
## Slackia_isoflavoniconvertens -0.1352053 -0.1353243
## Rubrobacter_radiotolerans -0.1352053 -0.1353243
## Thermoleophilum_album -0.1352053 -0.1353243
## Porphyromonas_endodontalis -0.1352053 -0.1353243
## Porphyromonas_somerae -0.1352053 -0.1353243
## Prevotella_histicola -0.1352053 -0.1353243
## Prevotella_melaninogenica -0.1352053 -0.1353243
## Prevotella_oris -0.1352053 -0.1353243
## Kouleothrix_aurantiaca -0.1352053 -0.1353243
## Hydrogenibacillus_schlegelii -0.1352053 -0.1353243
## Gemella_asaccharolytica -0.1352053 -0.1353243
## Gemella_bergeri -0.1352053 -0.1353243
## Gemella_haemolysans -0.1352053 -0.1353243
## Gemella_morbillorum -0.1352053 -0.1353243
## Gemella_sanguinis -0.1352053 -0.1353243
## Brochothrix_campestris -0.1352053 -0.1353243
## Staphylococcus_argenteus -0.1352053 -0.1353243
## Staphylococcus_aureus -0.1352053 -0.1353243
## Staphylococcus_epidermidis -0.1352053 -0.1353243
## Staphylococcus_schweitzeri -0.1352053 -0.1353243
## Abiotrophia_defectiva -0.1352053 -0.1353243
## Abiotrophia_sp_HMSC24B09 -0.1352053 -0.1353243
## Dolosigranulum_pigrum -0.1352053 -0.1353243
## Granulicatella_adiacens -0.1352053 -0.1353243
## Granulicatella_elegans -0.1352053 -0.1353243
## Enterococcus_faecalis -0.1352053 -0.1353243
## Lactobacillus_rhamnosus -0.1352053 -0.1353243
## Streptococcus_anginosus -0.1352053 -0.1353243
## Streptococcus_australis -0.1352053 -0.1353243
## Streptococcus_cristatus -0.1352053 -0.1353243
## Streptococcus_gordonii -0.1352053 -0.1353243
## Streptococcus_infantis -0.1352053 -0.1353243
## Streptococcus_milleri -0.1352053 -0.1353243
## Streptococcus_mitis -0.1352053 -0.1353243
## Streptococcus_oralis -0.1352053 -0.1353243
## Streptococcus_parasanguinis -0.1352053 -0.1353243
## Streptococcus_peroris -0.1352053 -0.1353243
## Streptococcus_pneumoniae -0.1352053 -0.1353243
## Streptococcus_pseudopneumoniae -0.1352053 -0.1353243
## Streptococcus_salivarius -0.1352053 -0.1353243
## Streptococcus_sanguinis -0.1352053 -0.1353243
## Streptococcus_sp_A12 -0.1352053 -0.1353243
## Streptococcus_sp_F0442 -0.1352053 -0.1353243
## Streptococcus_sp_HMSC034E03 -0.1352053 -0.1353243
## Streptococcus_sp_HMSC067H01 -0.1352053 -0.1353243
## Streptococcus_sp_HMSC071D03 -0.1352053 -0.1353243
## Streptococcus_sp_HPH0090 -0.1352053 -0.1353243
## Streptococcus_sp_M334 -0.1352053 -0.1353243
## Streptococcus_vestibularis -0.1352053 -0.1353243
## Eubacterium_brachy -0.1352053 -0.1353243
## Eubacterium_infirmum -0.1352053 -0.1353243
## Eubacterium_nodatum -0.1352053 -0.1353243
## Eubacterium_sulci -0.1352053 -0.1353243
## Mogibacterium_diversum -0.1352053 -0.1353243
## Mogibacterium_pumilum -0.1352053 -0.1353243
## Mogibacterium_timidum -0.1352053 -0.1353243
## Lachnoanaerobaculum_saburreum -0.1352053 -0.1353243
## Oribacterium_parvum -0.1352053 -0.1353243
## Oribacterium_sinus -0.1352053 -0.1353243
## Oribacterium_sp_oral_taxon_078 -0.1352053 -0.1353243
## Stomatobaculum_longum -0.1352053 -0.1353243
## Peptostreptococcus_stomatis -0.1352053 -0.1353243
## Bulleidia_extructa -0.1352053 -0.1353243
## Solobacterium_moorei -0.1352053 -0.1353243
## Limnochorda_pilosa -0.1352053 -0.1353243
## Veillonella_atypica -0.1352053 -0.1353243
## Veillonella_dispar -0.1352053 -0.1353243
## Veillonella_infantium -0.1352053 -0.1353243
## Veillonella_parvula -0.1352053 -0.1353243
## Veillonella_sp_T11011_6 -0.1352053 -0.1353243
## Anaerococcus_nagyae -0.1352053 -0.1353243
## Finegoldia_magna -0.1352053 -0.1353243
## Parvimonas_micra -0.1352053 -0.1353243
## Parvimonas_sp_oral_taxon_110 -0.1352053 -0.1353243
## Parvimonas_sp_oral_taxon_393 -0.1352053 -0.1353243
## Fusobacterium_nucleatum -0.1352053 -0.1353243
## Leptotrichia_wadei -0.1352053 -0.1353243
## Gemmata_obscuriglobus -0.1352053 -0.1353243
## Paludisphaera_borealis -0.1352053 -0.1353243
## Achromobacter_xylosoxidans -0.1352053 -0.1353243
## Cupriavidus_sp 12.0011260 12.3499319
## Sutterella_parvirubra 5.5981360 5.1679806
## Anaerobiospirillum_thomasii -0.1352053 -0.1353243
## Cardiobacterium_hominis -0.1352053 -0.1353243
## Cardiobacterium_valvarum -0.1352053 -0.1353243
## Alkalilimnicola_ehrlichii -0.1352053 -0.1353243
## Escherichia_coli -0.1352053 -0.1353243
## Thiohalorhabdus_denitrificans -0.1352053 -0.1353243
## Pseudomonas_aeruginosa -0.1352053 -0.1353243
## Acholeplasma_oculi -0.1352053 -0.1353243
## Candida_albicans -0.1352053 -0.1353243
## Candida_dubliniensis 9.4417901 9.5469553
## Candida_parapsilosis -0.1352053 -0.1353243
## Malassezia_restricta -0.1352053 -0.1353243
## Nakamurella_silvestris -0.1352053 -0.1353243
## Alloprevotella_tannerae -0.1352053 -0.1353243
## Prevotella_jejuni -0.1352053 -0.1353243
## Prevotella_pallens -0.1352053 -0.1353243
## Prevotella_salivae -0.1352053 -0.1353243
## Prevotella_sp_oral_taxon_306 -0.1352053 -0.1353243
## Prevotella_veroralis -0.1352053 -0.1353243
## Tannerella_sp_oral_taxon_808 -0.1352053 -0.1353243
## Tannerella_sp_oral_taxon_HOT_286 -0.1352053 -0.1353243
## Capnocytophaga_gingivalis -0.1352053 -0.1353243
## Bacillus_ginsengihumi -0.1352053 -0.1353243
## Listeria_floridensis -0.1352053 -0.1353243
## Agitococcus_lubricus -0.1352053 -0.1353243
## Lactobacillus_fermentum -0.1352053 -0.1353243
## Lactobacillus_gasseri -0.1352053 -0.1353243
## Sharpea_azabuensis -0.1352053 -0.1353243
## Streptococcus_mutans -0.1352053 -0.1353243
## Oribacterium_asaccharolyticum -0.1352053 -0.1353243
## Megasphaera_micronuciformis -0.1352053 -0.1353243
## Neisseria_flavescens -0.1352053 -0.1353243
## Neisseria_subflava -0.1352053 -0.1353243
## Stenotrophomonas_maltophilia -0.1352053 -0.1353243
## Stenotrophomonas_pavanii -0.1352053 -0.1353243
## Stenotrophomonas_rhizophila -0.1352053 -0.1353243
## Bacillus_intestinalis -0.1352053 -0.1353243
## Listeria_innocua -0.1352053 -0.1353243
## Listeria_monocytogenes -0.1352053 -0.1353243
## Staphylococcus_haemolyticus -0.1352053 -0.1353243
## Streptococcus_sobrinus -0.1352053 -0.1353243
## Eggerthia_catenaformis -0.1352053 -0.1353243
## Leptotrichia_sp_oral_taxon_498 -0.1352053 -0.1353243
## Rickettsia_felis -0.1352053 -0.1353243
## Haemophilus_parainfluenzae -0.1352053 -0.1353243
## Candida_orthopsilosis -0.1352053 -0.1353243
## Nannocystis_exedens -0.1352053 -0.1353243
## Campylobacter_concisus -0.1352053 -0.1353243
## Franconibacter_helveticus -0.1352053 -0.1353243
## Klebsiella_pneumoniae -0.1352053 -0.1353243
## Salmonella_enterica -0.1352053 -0.1353243
## Superficieibacter_electus -0.1352053 -0.1353243
## Pseudomonas_fluorescens -0.1352053 -0.1353243
## Saccharomyces_cerevisiae -0.1352053 -0.1353243
## S._cerevisiae x S._kudriavzevii -0.1352053 -0.1353243
## Saccharomyces_kudriavzevii -0.1352053 -0.1353243
## Cryptococcus_gattii_VGI -0.1352053 -0.1353243
## Cryptococcus_gattii_VGII -0.1352053 -0.1353243
## Cryptococcus_gattii_VGIII -0.1352053 -0.1353243
## Cryptococcus_neoformans -0.1352053 -0.1353243
## Listeria_marthii -0.1352053 -0.1353243
## Erwinia_persicina -0.1352053 -0.1353243
## Pseudomonas_formosensis -0.1352053 -0.1353243
## Pseudomonas_putida -0.1352053 -0.1353243
## BAL_073_a_control BAL_070_6_host_zero
## Actinobaculum_sp_oral_taxon_183 -0.03799013 -1.730821
## Actinomyces_georgiae -0.03799013 -1.730821
## Actinomyces_graevenitzii -0.03799013 -1.730821
## Actinomyces_hongkongensis -0.03799013 -1.730821
## Actinomyces_johnsonii -0.03799013 -1.730821
## Actinomyces_massiliensis -0.03799013 -1.730821
## Actinomyces_meyeri -0.03799013 -1.730821
## Actinomyces_naeslundii -0.03799013 4.409064
## Actinomyces_odontolyticus -0.03799013 -1.730821
## Actinomyces_oris -0.03799013 -1.730821
## Actinomyces_sp_HMSC035G02 -0.03799013 -1.730821
## Actinomyces_sp_HPA0247 -0.03799013 -1.730821
## Actinomyces_sp_ICM47 -0.03799013 -1.730821
## Actinomyces_sp_S6_Spd3 -0.03799013 6.445571
## Actinomyces_sp_oral_taxon_170 -0.03799013 -1.730821
## Actinomyces_sp_oral_taxon_180 -0.03799013 -1.730821
## Actinomyces_sp_oral_taxon_181 -0.03799013 -1.730821
## Actinomyces_sp_oral_taxon_414 -0.03799013 -1.730821
## Actinomyces_sp_oral_taxon_448 -0.03799013 -1.730821
## Actinomyces_sp_oral_taxon_897 -0.03799013 -1.730821
## Actinomyces_viscosus -0.03799013 -1.730821
## Aeriscardovia_aeriphila -0.03799013 -1.730821
## Alloscardovia_omnicolens -0.03799013 -1.730821
## Bifidobacterium_dentium -0.03799013 -1.730821
## Bifidobacterium_longum -0.03799013 -1.730821
## Scardovia_wiggsiae -0.03799013 2.932618
## Corynebacterium_accolens -0.03799013 -1.730821
## Corynebacterium_atypicum -0.03799013 -1.730821
## Corynebacterium_durum -0.03799013 -1.730821
## Corynebacterium_matruchotii -0.03799013 -1.730821
## Corynebacterium_pseudodiphtheriticum -0.03799013 -1.730821
## Corynebacterium_pseudogenitalium -0.03799013 -1.730821
## Corynebacterium_tuberculostearicum -0.03799013 4.786850
## Rothia_aeria -0.03799013 -1.730821
## Rothia_dentocariosa -0.03799013 -1.730821
## Rothia_mucilaginosa -0.03799013 5.820891
## Cutibacterium_acnes -0.03799013 1.880097
## Cutibacterium_granulosum -0.03799013 -1.730821
## Propionibacterium_humerusii -0.03799013 -1.730821
## Propionibacterium_namnetense -0.03799013 -1.730821
## Propionibacterium_acidifaciens -0.03799013 -1.730821
## Pseudopropionibacterium_propionicum -0.03799013 -1.730821
## Atopobium_deltae -0.03799013 2.923139
## Atopobium_parvulum -0.03799013 7.409955
## Atopobium_rimae -0.03799013 6.608441
## Olsenella_profusa -0.03799013 -1.730821
## Olsenella_scatoligenes -0.03799013 2.239471
## Olsenella_uli -0.03799013 -1.730821
## Collinsella_aerofaciens -0.03799013 -1.730821
## Collinsella_intestinalis -0.03799013 -1.730821
## Collinsella_stercoris -0.03799013 -1.730821
## Enorma_massiliensis -0.03799013 -1.730821
## [Collinsella]_massiliensis -0.03799013 -1.730821
## Asaccharobacter_celatus -0.03799013 -1.730821
## Denitrobacterium_detoxificans -0.03799013 -1.730821
## Enterorhabdus_caecimuris -0.03799013 -1.730821
## Slackia_exigua -0.03799013 -1.730821
## Slackia_isoflavoniconvertens -0.03799013 -1.730821
## Rubrobacter_radiotolerans -0.03799013 -1.730821
## Thermoleophilum_album -0.03799013 -1.730821
## Porphyromonas_endodontalis -0.03799013 -1.730821
## Porphyromonas_somerae -0.03799013 -1.730821
## Prevotella_histicola -0.03799013 -1.730821
## Prevotella_melaninogenica -0.03799013 8.608467
## Prevotella_oris -0.03799013 9.204747
## Kouleothrix_aurantiaca -0.03799013 -1.730821
## Hydrogenibacillus_schlegelii -0.03799013 -1.730821
## Gemella_asaccharolytica -0.03799013 3.966273
## Gemella_bergeri -0.03799013 3.410843
## Gemella_haemolysans -0.03799013 8.369425
## Gemella_morbillorum -0.03799013 5.521233
## Gemella_sanguinis -0.03799013 7.297278
## Brochothrix_campestris -0.03799013 -1.730821
## Staphylococcus_argenteus -0.03799013 11.229468
## Staphylococcus_aureus -0.03799013 14.459022
## Staphylococcus_epidermidis -0.03799013 7.292346
## Staphylococcus_schweitzeri -0.03799013 8.622659
## Abiotrophia_defectiva -0.03799013 -1.730821
## Abiotrophia_sp_HMSC24B09 -0.03799013 -1.730821
## Dolosigranulum_pigrum -0.03799013 -1.730821
## Granulicatella_adiacens -0.03799013 -1.730821
## Granulicatella_elegans -0.03799013 -1.730821
## Enterococcus_faecalis -0.03799013 10.008068
## Lactobacillus_rhamnosus -0.03799013 -1.730821
## Streptococcus_anginosus -0.03799013 11.329850
## Streptococcus_australis -0.03799013 -1.730821
## Streptococcus_cristatus -0.03799013 -1.730821
## Streptococcus_gordonii -0.03799013 -1.730821
## Streptococcus_infantis -0.03799013 -1.730821
## Streptococcus_milleri -0.03799013 -1.730821
## Streptococcus_mitis -0.03799013 -1.730821
## Streptococcus_oralis -0.03799013 -1.730821
## Streptococcus_parasanguinis -0.03799013 -1.730821
## Streptococcus_peroris -0.03799013 -1.730821
## Streptococcus_pneumoniae -0.03799013 -1.730821
## Streptococcus_pseudopneumoniae -0.03799013 -1.730821
## Streptococcus_salivarius -0.03799013 -1.730821
## Streptococcus_sanguinis -0.03799013 -1.730821
## Streptococcus_sp_A12 -0.03799013 -1.730821
## Streptococcus_sp_F0442 -0.03799013 -1.730821
## Streptococcus_sp_HMSC034E03 -0.03799013 -1.730821
## Streptococcus_sp_HMSC067H01 -0.03799013 -1.730821
## Streptococcus_sp_HMSC071D03 -0.03799013 -1.730821
## Streptococcus_sp_HPH0090 -0.03799013 -1.730821
## Streptococcus_sp_M334 -0.03799013 -1.730821
## Streptococcus_vestibularis -0.03799013 -1.730821
## Eubacterium_brachy -0.03799013 -1.730821
## Eubacterium_infirmum -0.03799013 7.013348
## Eubacterium_nodatum -0.03799013 -1.730821
## Eubacterium_sulci -0.03799013 -1.730821
## Mogibacterium_diversum -0.03799013 -1.730821
## Mogibacterium_pumilum -0.03799013 -1.730821
## Mogibacterium_timidum -0.03799013 -1.730821
## Lachnoanaerobaculum_saburreum -0.03799013 -1.730821
## Oribacterium_parvum -0.03799013 -1.730821
## Oribacterium_sinus -0.03799013 -1.730821
## Oribacterium_sp_oral_taxon_078 -0.03799013 -1.730821
## Stomatobaculum_longum -0.03799013 -1.730821
## Peptostreptococcus_stomatis -0.03799013 10.774738
## Bulleidia_extructa -0.03799013 5.721001
## Solobacterium_moorei -0.03799013 -1.730821
## Limnochorda_pilosa -0.03799013 -1.730821
## Veillonella_atypica -0.03799013 -1.730821
## Veillonella_dispar -0.03799013 -1.730821
## Veillonella_infantium -0.03799013 -1.730821
## Veillonella_parvula -0.03799013 7.389595
## Veillonella_sp_T11011_6 -0.03799013 -1.730821
## Anaerococcus_nagyae -0.03799013 -1.730821
## Finegoldia_magna -0.03799013 11.286269
## Parvimonas_micra -0.03799013 -1.730821
## Parvimonas_sp_oral_taxon_110 -0.03799013 -1.730821
## Parvimonas_sp_oral_taxon_393 -0.03799013 -1.730821
## Fusobacterium_nucleatum -0.03799013 6.754469
## Leptotrichia_wadei -0.03799013 -1.730821
## Gemmata_obscuriglobus -0.03799013 -1.730821
## Paludisphaera_borealis -0.03799013 -1.730821
## Achromobacter_xylosoxidans -0.03799013 -1.730821
## Cupriavidus_sp 7.67400638 10.136059
## Sutterella_parvirubra -0.03799013 -1.730821
## Anaerobiospirillum_thomasii -0.03799013 -1.730821
## Cardiobacterium_hominis -0.03799013 -1.730821
## Cardiobacterium_valvarum -0.03799013 -1.730821
## Alkalilimnicola_ehrlichii -0.03799013 -1.730821
## Escherichia_coli -0.03799013 -1.730821
## Thiohalorhabdus_denitrificans -0.03799013 -1.730821
## Pseudomonas_aeruginosa -0.03799013 -1.730821
## Acholeplasma_oculi -0.03799013 3.189160
## Candida_albicans -0.03799013 9.699907
## Candida_dubliniensis -0.03799013 -1.730821
## Candida_parapsilosis -0.03799013 -1.730821
## Malassezia_restricta -0.03799013 -1.730821
## Nakamurella_silvestris -0.03799013 -1.730821
## Alloprevotella_tannerae -0.03799013 10.121116
## Prevotella_jejuni -0.03799013 3.962911
## Prevotella_pallens -0.03799013 -1.730821
## Prevotella_salivae -0.03799013 2.458834
## Prevotella_sp_oral_taxon_306 -0.03799013 9.724020
## Prevotella_veroralis -0.03799013 10.146081
## Tannerella_sp_oral_taxon_808 -0.03799013 -1.730821
## Tannerella_sp_oral_taxon_HOT_286 -0.03799013 -1.730821
## Capnocytophaga_gingivalis -0.03799013 -1.730821
## Bacillus_ginsengihumi -0.03799013 -1.730821
## Listeria_floridensis -0.03799013 -1.730821
## Agitococcus_lubricus -0.03799013 -1.730821
## Lactobacillus_fermentum -0.03799013 -1.730821
## Lactobacillus_gasseri -0.03799013 -1.730821
## Sharpea_azabuensis -0.03799013 -1.730821
## Streptococcus_mutans -0.03799013 -1.730821
## Oribacterium_asaccharolyticum -0.03799013 -1.730821
## Megasphaera_micronuciformis -0.03799013 7.816848
## Neisseria_flavescens -0.03799013 5.787786
## Neisseria_subflava -0.03799013 -1.730821
## Stenotrophomonas_maltophilia -0.03799013 -1.730821
## Stenotrophomonas_pavanii -0.03799013 -1.730821
## Stenotrophomonas_rhizophila -0.03799013 -1.730821
## Bacillus_intestinalis -0.03799013 -1.730821
## Listeria_innocua -0.03799013 -1.730821
## Listeria_monocytogenes -0.03799013 -1.730821
## Staphylococcus_haemolyticus -0.03799013 -1.730821
## Streptococcus_sobrinus -0.03799013 -1.730821
## Eggerthia_catenaformis -0.03799013 -1.730821
## Leptotrichia_sp_oral_taxon_498 -0.03799013 -1.730821
## Rickettsia_felis -0.03799013 -1.730821
## Haemophilus_parainfluenzae -0.03799013 -1.730821
## Candida_orthopsilosis -0.03799013 -1.730821
## Nannocystis_exedens -0.03799013 -1.730821
## Campylobacter_concisus -0.03799013 5.365900
## Franconibacter_helveticus -0.03799013 -1.730821
## Klebsiella_pneumoniae -0.03799013 -1.730821
## Salmonella_enterica -0.03799013 -1.730821
## Superficieibacter_electus -0.03799013 -1.730821
## Pseudomonas_fluorescens -0.03799013 -1.730821
## Saccharomyces_cerevisiae -0.03799013 -1.730821
## S._cerevisiae x S._kudriavzevii -0.03799013 -1.730821
## Saccharomyces_kudriavzevii -0.03799013 -1.730821
## Cryptococcus_gattii_VGI -0.03799013 -1.730821
## Cryptococcus_gattii_VGII -0.03799013 -1.730821
## Cryptococcus_gattii_VGIII -0.03799013 -1.730821
## Cryptococcus_neoformans -0.03799013 -1.730821
## Listeria_marthii -0.03799013 -1.730821
## Erwinia_persicina -0.03799013 -1.730821
## Pseudomonas_formosensis -0.03799013 -1.730821
## Pseudomonas_putida -0.03799013 -1.730821
## BAL_070_5_qiaamp BAL_070_4_benzonase
## Actinobaculum_sp_oral_taxon_183 -1.900884 -1.336211
## Actinomyces_georgiae -1.900884 -1.336211
## Actinomyces_graevenitzii -1.900884 -1.336211
## Actinomyces_hongkongensis -1.900884 -1.336211
## Actinomyces_johnsonii -1.900884 -1.336211
## Actinomyces_massiliensis -1.900884 -1.336211
## Actinomyces_meyeri -1.900884 -1.336211
## Actinomyces_naeslundii 4.179049 -1.336211
## Actinomyces_odontolyticus -1.900884 -1.336211
## Actinomyces_oris -1.900884 -1.336211
## Actinomyces_sp_HMSC035G02 -1.900884 -1.336211
## Actinomyces_sp_HPA0247 -1.900884 -1.336211
## Actinomyces_sp_ICM47 -1.900884 -1.336211
## Actinomyces_sp_S6_Spd3 6.733914 5.832368
## Actinomyces_sp_oral_taxon_170 -1.900884 -1.336211
## Actinomyces_sp_oral_taxon_180 -1.900884 -1.336211
## Actinomyces_sp_oral_taxon_181 2.886607 -1.336211
## Actinomyces_sp_oral_taxon_414 -1.900884 -1.336211
## Actinomyces_sp_oral_taxon_448 -1.900884 -1.336211
## Actinomyces_sp_oral_taxon_897 -1.900884 -1.336211
## Actinomyces_viscosus -1.900884 -1.336211
## Aeriscardovia_aeriphila -1.900884 -1.336211
## Alloscardovia_omnicolens -1.900884 -1.336211
## Bifidobacterium_dentium -1.900884 -1.336211
## Bifidobacterium_longum -1.900884 -1.336211
## Scardovia_wiggsiae -1.900884 -1.336211
## Corynebacterium_accolens -1.900884 -1.336211
## Corynebacterium_atypicum -1.900884 -1.336211
## Corynebacterium_durum -1.900884 -1.336211
## Corynebacterium_matruchotii -1.900884 -1.336211
## Corynebacterium_pseudodiphtheriticum -1.900884 -1.336211
## Corynebacterium_pseudogenitalium -1.900884 -1.336211
## Corynebacterium_tuberculostearicum 3.925116 -1.336211
## Rothia_aeria -1.900884 -1.336211
## Rothia_dentocariosa -1.900884 -1.336211
## Rothia_mucilaginosa 6.470820 -1.336211
## Cutibacterium_acnes 4.085568 -1.336211
## Cutibacterium_granulosum -1.900884 -1.336211
## Propionibacterium_humerusii -1.900884 -1.336211
## Propionibacterium_namnetense -1.900884 -1.336211
## Propionibacterium_acidifaciens -1.900884 -1.336211
## Pseudopropionibacterium_propionicum -1.900884 -1.336211
## Atopobium_deltae 4.129801 3.916062
## Atopobium_parvulum 7.644856 6.196412
## Atopobium_rimae 7.065727 5.473931
## Olsenella_profusa -1.900884 -1.336211
## Olsenella_scatoligenes 2.694235 -1.336211
## Olsenella_uli -1.900884 -1.336211
## Collinsella_aerofaciens -1.900884 -1.336211
## Collinsella_intestinalis -1.900884 -1.336211
## Collinsella_stercoris -1.900884 -1.336211
## Enorma_massiliensis -1.900884 -1.336211
## [Collinsella]_massiliensis -1.900884 -1.336211
## Asaccharobacter_celatus -1.900884 -1.336211
## Denitrobacterium_detoxificans -1.900884 -1.336211
## Enterorhabdus_caecimuris -1.900884 -1.336211
## Slackia_exigua -1.900884 -1.336211
## Slackia_isoflavoniconvertens -1.900884 -1.336211
## Rubrobacter_radiotolerans -1.900884 -1.336211
## Thermoleophilum_album -1.900884 -1.336211
## Porphyromonas_endodontalis -1.900884 -1.336211
## Porphyromonas_somerae -1.900884 -1.336211
## Prevotella_histicola -1.900884 -1.336211
## Prevotella_melaninogenica 9.732540 8.698655
## Prevotella_oris 11.036007 10.807193
## Kouleothrix_aurantiaca -1.900884 -1.336211
## Hydrogenibacillus_schlegelii -1.900884 -1.336211
## Gemella_asaccharolytica 4.358697 2.706840
## Gemella_bergeri 3.240779 5.190283
## Gemella_haemolysans 8.554820 5.743815
## Gemella_morbillorum 6.290579 3.905536
## Gemella_sanguinis 7.494856 5.900128
## Brochothrix_campestris -1.900884 -1.336211
## Staphylococcus_argenteus 11.535770 9.537657
## Staphylococcus_aureus 14.762668 12.572556
## Staphylococcus_epidermidis 7.744609 -1.336211
## Staphylococcus_schweitzeri 8.951148 7.095642
## Abiotrophia_defectiva -1.900884 -1.336211
## Abiotrophia_sp_HMSC24B09 -1.900884 -1.336211
## Dolosigranulum_pigrum -1.900884 -1.336211
## Granulicatella_adiacens -1.900884 -1.336211
## Granulicatella_elegans -1.900884 -1.336211
## Enterococcus_faecalis 10.094720 8.675413
## Lactobacillus_rhamnosus -1.900884 -1.336211
## Streptococcus_anginosus 11.347817 9.644750
## Streptococcus_australis -1.900884 -1.336211
## Streptococcus_cristatus -1.900884 -1.336211
## Streptococcus_gordonii -1.900884 -1.336211
## Streptococcus_infantis -1.900884 -1.336211
## Streptococcus_milleri -1.900884 -1.336211
## Streptococcus_mitis -1.900884 -1.336211
## Streptococcus_oralis -1.900884 -1.336211
## Streptococcus_parasanguinis -1.900884 -1.336211
## Streptococcus_peroris -1.900884 -1.336211
## Streptococcus_pneumoniae -1.900884 -1.336211
## Streptococcus_pseudopneumoniae -1.900884 -1.336211
## Streptococcus_salivarius -1.900884 -1.336211
## Streptococcus_sanguinis -1.900884 -1.336211
## Streptococcus_sp_A12 -1.900884 -1.336211
## Streptococcus_sp_F0442 -1.900884 -1.336211
## Streptococcus_sp_HMSC034E03 -1.900884 -1.336211
## Streptococcus_sp_HMSC067H01 -1.900884 -1.336211
## Streptococcus_sp_HMSC071D03 -1.900884 -1.336211
## Streptococcus_sp_HPH0090 -1.900884 -1.336211
## Streptococcus_sp_M334 -1.900884 -1.336211
## Streptococcus_vestibularis -1.900884 -1.336211
## Eubacterium_brachy -1.900884 -1.336211
## Eubacterium_infirmum 7.572666 5.536952
## Eubacterium_nodatum -1.900884 -1.336211
## Eubacterium_sulci -1.900884 -1.336211
## Mogibacterium_diversum -1.900884 -1.336211
## Mogibacterium_pumilum -1.900884 -1.336211
## Mogibacterium_timidum -1.900884 -1.336211
## Lachnoanaerobaculum_saburreum -1.900884 -1.336211
## Oribacterium_parvum -1.900884 -1.336211
## Oribacterium_sinus -1.900884 -1.336211
## Oribacterium_sp_oral_taxon_078 -1.900884 -1.336211
## Stomatobaculum_longum -1.900884 -1.336211
## Peptostreptococcus_stomatis 11.095029 9.012699
## Bulleidia_extructa 5.657111 -1.336211
## Solobacterium_moorei -1.900884 -1.336211
## Limnochorda_pilosa -1.900884 -1.336211
## Veillonella_atypica -1.900884 -1.336211
## Veillonella_dispar -1.900884 -1.336211
## Veillonella_infantium -1.900884 -1.336211
## Veillonella_parvula 6.921290 6.531277
## Veillonella_sp_T11011_6 -1.900884 -1.336211
## Anaerococcus_nagyae -1.900884 -1.336211
## Finegoldia_magna 11.444227 9.759940
## Parvimonas_micra -1.900884 -1.336211
## Parvimonas_sp_oral_taxon_110 -1.900884 -1.336211
## Parvimonas_sp_oral_taxon_393 -1.900884 -1.336211
## Fusobacterium_nucleatum 5.989324 6.655042
## Leptotrichia_wadei -1.900884 -1.336211
## Gemmata_obscuriglobus -1.900884 -1.336211
## Paludisphaera_borealis -1.900884 -1.336211
## Achromobacter_xylosoxidans -1.900884 -1.336211
## Cupriavidus_sp 10.390420 9.043572
## Sutterella_parvirubra 2.790463 -1.336211
## Anaerobiospirillum_thomasii -1.900884 -1.336211
## Cardiobacterium_hominis -1.900884 -1.336211
## Cardiobacterium_valvarum -1.900884 -1.336211
## Alkalilimnicola_ehrlichii -1.900884 -1.336211
## Escherichia_coli -1.900884 -1.336211
## Thiohalorhabdus_denitrificans -1.900884 -1.336211
## Pseudomonas_aeruginosa -1.900884 -1.336211
## Acholeplasma_oculi -1.900884 -1.336211
## Candida_albicans 9.365910 7.481086
## Candida_dubliniensis -1.900884 -1.336211
## Candida_parapsilosis -1.900884 -1.336211
## Malassezia_restricta -1.900884 -1.336211
## Nakamurella_silvestris -1.900884 -1.336211
## Alloprevotella_tannerae 11.613344 10.894910
## Prevotella_jejuni 6.271562 4.696875
## Prevotella_pallens -1.900884 -1.336211
## Prevotella_salivae 6.990077 6.376232
## Prevotella_sp_oral_taxon_306 10.762784 10.004264
## Prevotella_veroralis 11.122525 10.535919
## Tannerella_sp_oral_taxon_808 -1.900884 -1.336211
## Tannerella_sp_oral_taxon_HOT_286 -1.900884 -1.336211
## Capnocytophaga_gingivalis -1.900884 -1.336211
## Bacillus_ginsengihumi -1.900884 -1.336211
## Listeria_floridensis -1.900884 -1.336211
## Agitococcus_lubricus -1.900884 -1.336211
## Lactobacillus_fermentum -1.900884 -1.336211
## Lactobacillus_gasseri -1.900884 -1.336211
## Sharpea_azabuensis -1.900884 -1.336211
## Streptococcus_mutans -1.900884 -1.336211
## Oribacterium_asaccharolyticum -1.900884 -1.336211
## Megasphaera_micronuciformis 8.126501 7.412728
## Neisseria_flavescens 6.505601 6.689632
## Neisseria_subflava 3.816143 -1.336211
## Stenotrophomonas_maltophilia -1.900884 -1.336211
## Stenotrophomonas_pavanii -1.900884 -1.336211
## Stenotrophomonas_rhizophila -1.900884 -1.336211
## Bacillus_intestinalis -1.900884 -1.336211
## Listeria_innocua -1.900884 -1.336211
## Listeria_monocytogenes -1.900884 -1.336211
## Staphylococcus_haemolyticus -1.900884 -1.336211
## Streptococcus_sobrinus -1.900884 -1.336211
## Eggerthia_catenaformis -1.900884 -1.336211
## Leptotrichia_sp_oral_taxon_498 -1.900884 -1.336211
## Rickettsia_felis -1.900884 -1.336211
## Haemophilus_parainfluenzae -1.900884 -1.336211
## Candida_orthopsilosis -1.900884 -1.336211
## Nannocystis_exedens -1.900884 -1.336211
## Campylobacter_concisus 6.547602 7.300008
## Franconibacter_helveticus -1.900884 -1.336211
## Klebsiella_pneumoniae -1.900884 -1.336211
## Salmonella_enterica -1.900884 -1.336211
## Superficieibacter_electus -1.900884 -1.336211
## Pseudomonas_fluorescens -1.900884 -1.336211
## Saccharomyces_cerevisiae -1.900884 -1.336211
## S._cerevisiae x S._kudriavzevii -1.900884 -1.336211
## Saccharomyces_kudriavzevii -1.900884 -1.336211
## Cryptococcus_gattii_VGI -1.900884 -1.336211
## Cryptococcus_gattii_VGII -1.900884 -1.336211
## Cryptococcus_gattii_VGIII -1.900884 -1.336211
## Cryptococcus_neoformans -1.900884 -1.336211
## Listeria_marthii -1.900884 -1.336211
## Erwinia_persicina -1.900884 -1.336211
## Pseudomonas_formosensis -1.900884 -1.336211
## Pseudomonas_putida -1.900884 -1.336211
## BAL_070_3_molysis BAL_070_2_lyPMA
## Actinobaculum_sp_oral_taxon_183 -2.055637 -0.2706181
## Actinomyces_georgiae -2.055637 -0.2706181
## Actinomyces_graevenitzii -2.055637 -0.2706181
## Actinomyces_hongkongensis -2.055637 -0.2706181
## Actinomyces_johnsonii -2.055637 -0.2706181
## Actinomyces_massiliensis -2.055637 -0.2706181
## Actinomyces_meyeri -2.055637 -0.2706181
## Actinomyces_naeslundii 5.132776 -0.2706181
## Actinomyces_odontolyticus 2.697953 -0.2706181
## Actinomyces_oris -2.055637 -0.2706181
## Actinomyces_sp_HMSC035G02 -2.055637 -0.2706181
## Actinomyces_sp_HPA0247 -2.055637 -0.2706181
## Actinomyces_sp_ICM47 -2.055637 -0.2706181
## Actinomyces_sp_S6_Spd3 7.779143 -0.2706181
## Actinomyces_sp_oral_taxon_170 -2.055637 -0.2706181
## Actinomyces_sp_oral_taxon_180 -2.055637 -0.2706181
## Actinomyces_sp_oral_taxon_181 4.136725 -0.2706181
## Actinomyces_sp_oral_taxon_414 -2.055637 -0.2706181
## Actinomyces_sp_oral_taxon_448 -2.055637 -0.2706181
## Actinomyces_sp_oral_taxon_897 -2.055637 -0.2706181
## Actinomyces_viscosus -2.055637 -0.2706181
## Aeriscardovia_aeriphila -2.055637 -0.2706181
## Alloscardovia_omnicolens -2.055637 -0.2706181
## Bifidobacterium_dentium -2.055637 -0.2706181
## Bifidobacterium_longum -2.055637 -0.2706181
## Scardovia_wiggsiae 3.501191 -0.2706181
## Corynebacterium_accolens -2.055637 -0.2706181
## Corynebacterium_atypicum -2.055637 -0.2706181
## Corynebacterium_durum -2.055637 -0.2706181
## Corynebacterium_matruchotii -2.055637 -0.2706181
## Corynebacterium_pseudodiphtheriticum -2.055637 -0.2706181
## Corynebacterium_pseudogenitalium -2.055637 -0.2706181
## Corynebacterium_tuberculostearicum 5.154443 -0.2706181
## Rothia_aeria -2.055637 -0.2706181
## Rothia_dentocariosa -2.055637 -0.2706181
## Rothia_mucilaginosa 6.678440 -0.2706181
## Cutibacterium_acnes 2.275096 -0.2706181
## Cutibacterium_granulosum -2.055637 -0.2706181
## Propionibacterium_humerusii -2.055637 -0.2706181
## Propionibacterium_namnetense -2.055637 -0.2706181
## Propionibacterium_acidifaciens -2.055637 -0.2706181
## Pseudopropionibacterium_propionicum -2.055637 -0.2706181
## Atopobium_deltae 4.660958 -0.2706181
## Atopobium_parvulum 7.687564 -0.2706181
## Atopobium_rimae 7.011179 -0.2706181
## Olsenella_profusa -2.055637 -0.2706181
## Olsenella_scatoligenes 3.677704 -0.2706181
## Olsenella_uli -2.055637 -0.2706181
## Collinsella_aerofaciens 2.921097 -0.2706181
## Collinsella_intestinalis -2.055637 -0.2706181
## Collinsella_stercoris -2.055637 -0.2706181
## Enorma_massiliensis -2.055637 -0.2706181
## [Collinsella]_massiliensis -2.055637 -0.2706181
## Asaccharobacter_celatus -2.055637 -0.2706181
## Denitrobacterium_detoxificans -2.055637 -0.2706181
## Enterorhabdus_caecimuris -2.055637 -0.2706181
## Slackia_exigua -2.055637 -0.2706181
## Slackia_isoflavoniconvertens -2.055637 -0.2706181
## Rubrobacter_radiotolerans -2.055637 -0.2706181
## Thermoleophilum_album -2.055637 -0.2706181
## Porphyromonas_endodontalis -2.055637 -0.2706181
## Porphyromonas_somerae -2.055637 -0.2706181
## Prevotella_histicola -2.055637 -0.2706181
## Prevotella_melaninogenica 8.827548 -0.2706181
## Prevotella_oris 10.084867 8.2401545
## Kouleothrix_aurantiaca -2.055637 -0.2706181
## Hydrogenibacillus_schlegelii -2.055637 -0.2706181
## Gemella_asaccharolytica 4.572404 -0.2706181
## Gemella_bergeri 4.182688 -0.2706181
## Gemella_haemolysans 8.324644 -0.2706181
## Gemella_morbillorum 5.705256 -0.2706181
## Gemella_sanguinis 7.290806 -0.2706181
## Brochothrix_campestris -2.055637 -0.2706181
## Staphylococcus_argenteus 11.148463 5.9298910
## Staphylococcus_aureus 14.389932 9.0865030
## Staphylococcus_epidermidis 7.358542 -0.2706181
## Staphylococcus_schweitzeri 8.554580 -0.2706181
## Abiotrophia_defectiva -2.055637 -0.2706181
## Abiotrophia_sp_HMSC24B09 -2.055637 -0.2706181
## Dolosigranulum_pigrum -2.055637 -0.2706181
## Granulicatella_adiacens -2.055637 -0.2706181
## Granulicatella_elegans -2.055637 -0.2706181
## Enterococcus_faecalis 10.041770 -0.2706181
## Lactobacillus_rhamnosus -2.055637 -0.2706181
## Streptococcus_anginosus 11.638484 6.8594804
## Streptococcus_australis -2.055637 -0.2706181
## Streptococcus_cristatus -2.055637 -0.2706181
## Streptococcus_gordonii -2.055637 -0.2706181
## Streptococcus_infantis -2.055637 -0.2706181
## Streptococcus_milleri -2.055637 -0.2706181
## Streptococcus_mitis -2.055637 -0.2706181
## Streptococcus_oralis -2.055637 -0.2706181
## Streptococcus_parasanguinis -2.055637 -0.2706181
## Streptococcus_peroris -2.055637 -0.2706181
## Streptococcus_pneumoniae -2.055637 -0.2706181
## Streptococcus_pseudopneumoniae -2.055637 -0.2706181
## Streptococcus_salivarius -2.055637 -0.2706181
## Streptococcus_sanguinis -2.055637 -0.2706181
## Streptococcus_sp_A12 -2.055637 -0.2706181
## Streptococcus_sp_F0442 -2.055637 -0.2706181
## Streptococcus_sp_HMSC034E03 -2.055637 -0.2706181
## Streptococcus_sp_HMSC067H01 -2.055637 -0.2706181
## Streptococcus_sp_HMSC071D03 -2.055637 -0.2706181
## Streptococcus_sp_HPH0090 -2.055637 -0.2706181
## Streptococcus_sp_M334 -2.055637 -0.2706181
## Streptococcus_vestibularis -2.055637 -0.2706181
## Eubacterium_brachy -2.055637 -0.2706181
## Eubacterium_infirmum 8.343156 -0.2706181
## Eubacterium_nodatum -2.055637 -0.2706181
## Eubacterium_sulci -2.055637 -0.2706181
## Mogibacterium_diversum -2.055637 -0.2706181
## Mogibacterium_pumilum -2.055637 -0.2706181
## Mogibacterium_timidum -2.055637 -0.2706181
## Lachnoanaerobaculum_saburreum -2.055637 -0.2706181
## Oribacterium_parvum -2.055637 -0.2706181
## Oribacterium_sinus -2.055637 -0.2706181
## Oribacterium_sp_oral_taxon_078 -2.055637 -0.2706181
## Stomatobaculum_longum -2.055637 -0.2706181
## Peptostreptococcus_stomatis 11.029571 -0.2706181
## Bulleidia_extructa 6.620780 -0.2706181
## Solobacterium_moorei 3.252631 -0.2706181
## Limnochorda_pilosa -2.055637 -0.2706181
## Veillonella_atypica -2.055637 -0.2706181
## Veillonella_dispar -2.055637 -0.2706181
## Veillonella_infantium -2.055637 -0.2706181
## Veillonella_parvula 8.530619 -0.2706181
## Veillonella_sp_T11011_6 -2.055637 -0.2706181
## Anaerococcus_nagyae -2.055637 -0.2706181
## Finegoldia_magna 11.225639 -0.2706181
## Parvimonas_micra -2.055637 -0.2706181
## Parvimonas_sp_oral_taxon_110 -2.055637 -0.2706181
## Parvimonas_sp_oral_taxon_393 -2.055637 -0.2706181
## Fusobacterium_nucleatum 6.673922 -0.2706181
## Leptotrichia_wadei -2.055637 -0.2706181
## Gemmata_obscuriglobus -2.055637 -0.2706181
## Paludisphaera_borealis -2.055637 -0.2706181
## Achromobacter_xylosoxidans -2.055637 -0.2706181
## Cupriavidus_sp 10.254395 -0.2706181
## Sutterella_parvirubra 4.312550 -0.2706181
## Anaerobiospirillum_thomasii -2.055637 -0.2706181
## Cardiobacterium_hominis -2.055637 -0.2706181
## Cardiobacterium_valvarum -2.055637 -0.2706181
## Alkalilimnicola_ehrlichii -2.055637 -0.2706181
## Escherichia_coli -2.055637 -0.2706181
## Thiohalorhabdus_denitrificans -2.055637 -0.2706181
## Pseudomonas_aeruginosa -2.055637 -0.2706181
## Acholeplasma_oculi 2.178469 -0.2706181
## Candida_albicans 10.258509 -0.2706181
## Candida_dubliniensis -2.055637 -0.2706181
## Candida_parapsilosis -2.055637 -0.2706181
## Malassezia_restricta -2.055637 -0.2706181
## Nakamurella_silvestris -2.055637 -0.2706181
## Alloprevotella_tannerae 10.442396 8.8089300
## Prevotella_jejuni 5.151482 -0.2706181
## Prevotella_pallens -2.055637 -0.2706181
## Prevotella_salivae 6.077950 -0.2706181
## Prevotella_sp_oral_taxon_306 10.663819 6.8698349
## Prevotella_veroralis 11.008078 7.2463591
## Tannerella_sp_oral_taxon_808 -2.055637 -0.2706181
## Tannerella_sp_oral_taxon_HOT_286 -2.055637 -0.2706181
## Capnocytophaga_gingivalis -2.055637 -0.2706181
## Bacillus_ginsengihumi -2.055637 -0.2706181
## Listeria_floridensis -2.055637 -0.2706181
## Agitococcus_lubricus -2.055637 -0.2706181
## Lactobacillus_fermentum -2.055637 -0.2706181
## Lactobacillus_gasseri -2.055637 -0.2706181
## Sharpea_azabuensis -2.055637 -0.2706181
## Streptococcus_mutans -2.055637 -0.2706181
## Oribacterium_asaccharolyticum -2.055637 -0.2706181
## Megasphaera_micronuciformis 9.115347 -0.2706181
## Neisseria_flavescens 7.082992 -0.2706181
## Neisseria_subflava -2.055637 -0.2706181
## Stenotrophomonas_maltophilia -2.055637 -0.2706181
## Stenotrophomonas_pavanii -2.055637 -0.2706181
## Stenotrophomonas_rhizophila -2.055637 -0.2706181
## Bacillus_intestinalis -2.055637 -0.2706181
## Listeria_innocua -2.055637 -0.2706181
## Listeria_monocytogenes -2.055637 -0.2706181
## Staphylococcus_haemolyticus -2.055637 -0.2706181
## Streptococcus_sobrinus -2.055637 -0.2706181
## Eggerthia_catenaformis -2.055637 -0.2706181
## Leptotrichia_sp_oral_taxon_498 -2.055637 -0.2706181
## Rickettsia_felis -2.055637 -0.2706181
## Haemophilus_parainfluenzae -2.055637 -0.2706181
## Candida_orthopsilosis -2.055637 -0.2706181
## Nannocystis_exedens -2.055637 -0.2706181
## Campylobacter_concisus 7.134092 -0.2706181
## Franconibacter_helveticus -2.055637 -0.2706181
## Klebsiella_pneumoniae -2.055637 -0.2706181
## Salmonella_enterica -2.055637 -0.2706181
## Superficieibacter_electus -2.055637 -0.2706181
## Pseudomonas_fluorescens -2.055637 -0.2706181
## Saccharomyces_cerevisiae -2.055637 -0.2706181
## S._cerevisiae x S._kudriavzevii -2.055637 -0.2706181
## Saccharomyces_kudriavzevii -2.055637 -0.2706181
## Cryptococcus_gattii_VGI -2.055637 -0.2706181
## Cryptococcus_gattii_VGII -2.055637 -0.2706181
## Cryptococcus_gattii_VGIII -2.055637 -0.2706181
## Cryptococcus_neoformans -2.055637 -0.2706181
## Listeria_marthii -2.055637 -0.2706181
## Erwinia_persicina -2.055637 -0.2706181
## Pseudomonas_formosensis -2.055637 -0.2706181
## Pseudomonas_putida -2.055637 -0.2706181
## BAL_070_1_control 20220606_Pos
## Actinobaculum_sp_oral_taxon_183 -0.4723927 -1.938175
## Actinomyces_georgiae -0.4723927 -1.938175
## Actinomyces_graevenitzii -0.4723927 -1.938175
## Actinomyces_hongkongensis -0.4723927 -1.938175
## Actinomyces_johnsonii -0.4723927 -1.938175
## Actinomyces_massiliensis -0.4723927 -1.938175
## Actinomyces_meyeri -0.4723927 -1.938175
## Actinomyces_naeslundii -0.4723927 -1.938175
## Actinomyces_odontolyticus -0.4723927 -1.938175
## Actinomyces_oris -0.4723927 -1.938175
## Actinomyces_sp_HMSC035G02 -0.4723927 -1.938175
## Actinomyces_sp_HPA0247 -0.4723927 -1.938175
## Actinomyces_sp_ICM47 -0.4723927 -1.938175
## Actinomyces_sp_S6_Spd3 -0.4723927 -1.938175
## Actinomyces_sp_oral_taxon_170 -0.4723927 -1.938175
## Actinomyces_sp_oral_taxon_180 -0.4723927 -1.938175
## Actinomyces_sp_oral_taxon_181 -0.4723927 -1.938175
## Actinomyces_sp_oral_taxon_414 -0.4723927 -1.938175
## Actinomyces_sp_oral_taxon_448 -0.4723927 -1.938175
## Actinomyces_sp_oral_taxon_897 -0.4723927 -1.938175
## Actinomyces_viscosus -0.4723927 -1.938175
## Aeriscardovia_aeriphila -0.4723927 -1.938175
## Alloscardovia_omnicolens -0.4723927 -1.938175
## Bifidobacterium_dentium -0.4723927 -1.938175
## Bifidobacterium_longum -0.4723927 -1.938175
## Scardovia_wiggsiae -0.4723927 -1.938175
## Corynebacterium_accolens -0.4723927 -1.938175
## Corynebacterium_atypicum -0.4723927 -1.938175
## Corynebacterium_durum -0.4723927 -1.938175
## Corynebacterium_matruchotii -0.4723927 -1.938175
## Corynebacterium_pseudodiphtheriticum -0.4723927 -1.938175
## Corynebacterium_pseudogenitalium -0.4723927 -1.938175
## Corynebacterium_tuberculostearicum -0.4723927 -1.938175
## Rothia_aeria -0.4723927 -1.938175
## Rothia_dentocariosa -0.4723927 -1.938175
## Rothia_mucilaginosa -0.4723927 -1.938175
## Cutibacterium_acnes -0.4723927 -1.938175
## Cutibacterium_granulosum -0.4723927 -1.938175
## Propionibacterium_humerusii -0.4723927 -1.938175
## Propionibacterium_namnetense -0.4723927 -1.938175
## Propionibacterium_acidifaciens -0.4723927 -1.938175
## Pseudopropionibacterium_propionicum -0.4723927 -1.938175
## Atopobium_deltae -0.4723927 -1.938175
## Atopobium_parvulum 4.6634057 -1.938175
## Atopobium_rimae -0.4723927 -1.938175
## Olsenella_profusa -0.4723927 -1.938175
## Olsenella_scatoligenes -0.4723927 -1.938175
## Olsenella_uli -0.4723927 -1.938175
## Collinsella_aerofaciens -0.4723927 -1.938175
## Collinsella_intestinalis -0.4723927 -1.938175
## Collinsella_stercoris -0.4723927 -1.938175
## Enorma_massiliensis -0.4723927 -1.938175
## [Collinsella]_massiliensis -0.4723927 -1.938175
## Asaccharobacter_celatus -0.4723927 -1.938175
## Denitrobacterium_detoxificans -0.4723927 -1.938175
## Enterorhabdus_caecimuris -0.4723927 -1.938175
## Slackia_exigua -0.4723927 -1.938175
## Slackia_isoflavoniconvertens -0.4723927 -1.938175
## Rubrobacter_radiotolerans -0.4723927 -1.938175
## Thermoleophilum_album -0.4723927 5.115411
## Porphyromonas_endodontalis -0.4723927 -1.938175
## Porphyromonas_somerae -0.4723927 -1.938175
## Prevotella_histicola -0.4723927 -1.938175
## Prevotella_melaninogenica 6.7015656 -1.938175
## Prevotella_oris 8.7625427 -1.938175
## Kouleothrix_aurantiaca -0.4723927 3.817567
## Hydrogenibacillus_schlegelii -0.4723927 3.495547
## Gemella_asaccharolytica -0.4723927 -1.938175
## Gemella_bergeri -0.4723927 -1.938175
## Gemella_haemolysans -0.4723927 9.183336
## Gemella_morbillorum -0.4723927 -1.938175
## Gemella_sanguinis -0.4723927 7.836001
## Brochothrix_campestris -0.4723927 5.379038
## Staphylococcus_argenteus 5.7281165 10.512838
## Staphylococcus_aureus 9.4603138 13.507099
## Staphylococcus_epidermidis -0.4723927 -1.938175
## Staphylococcus_schweitzeri -0.4723927 8.541195
## Abiotrophia_defectiva -0.4723927 -1.938175
## Abiotrophia_sp_HMSC24B09 -0.4723927 -1.938175
## Dolosigranulum_pigrum -0.4723927 -1.938175
## Granulicatella_adiacens -0.4723927 -1.938175
## Granulicatella_elegans -0.4723927 2.087177
## Enterococcus_faecalis 6.6790928 14.009404
## Lactobacillus_rhamnosus -0.4723927 -1.938175
## Streptococcus_anginosus 8.5112980 -1.938175
## Streptococcus_australis -0.4723927 -1.938175
## Streptococcus_cristatus -0.4723927 -1.938175
## Streptococcus_gordonii -0.4723927 -1.938175
## Streptococcus_infantis -0.4723927 -1.938175
## Streptococcus_milleri -0.4723927 -1.938175
## Streptococcus_mitis -0.4723927 -1.938175
## Streptococcus_oralis -0.4723927 -1.938175
## Streptococcus_parasanguinis -0.4723927 -1.938175
## Streptococcus_peroris -0.4723927 -1.938175
## Streptococcus_pneumoniae -0.4723927 -1.938175
## Streptococcus_pseudopneumoniae -0.4723927 -1.938175
## Streptococcus_salivarius -0.4723927 -1.938175
## Streptococcus_sanguinis -0.4723927 -1.938175
## Streptococcus_sp_A12 -0.4723927 -1.938175
## Streptococcus_sp_F0442 -0.4723927 -1.938175
## Streptococcus_sp_HMSC034E03 -0.4723927 -1.938175
## Streptococcus_sp_HMSC067H01 -0.4723927 -1.938175
## Streptococcus_sp_HMSC071D03 -0.4723927 -1.938175
## Streptococcus_sp_HPH0090 -0.4723927 -1.938175
## Streptococcus_sp_M334 -0.4723927 -1.938175
## Streptococcus_vestibularis -0.4723927 -1.938175
## Eubacterium_brachy -0.4723927 -1.938175
## Eubacterium_infirmum -0.4723927 -1.938175
## Eubacterium_nodatum -0.4723927 -1.938175
## Eubacterium_sulci -0.4723927 -1.938175
## Mogibacterium_diversum -0.4723927 -1.938175
## Mogibacterium_pumilum -0.4723927 -1.938175
## Mogibacterium_timidum -0.4723927 -1.938175
## Lachnoanaerobaculum_saburreum -0.4723927 -1.938175
## Oribacterium_parvum -0.4723927 -1.938175
## Oribacterium_sinus -0.4723927 -1.938175
## Oribacterium_sp_oral_taxon_078 -0.4723927 -1.938175
## Stomatobaculum_longum -0.4723927 -1.938175
## Peptostreptococcus_stomatis 5.6930252 -1.938175
## Bulleidia_extructa -0.4723927 -1.938175
## Solobacterium_moorei -0.4723927 -1.938175
## Limnochorda_pilosa -0.4723927 4.020250
## Veillonella_atypica -0.4723927 -1.938175
## Veillonella_dispar -0.4723927 -1.938175
## Veillonella_infantium -0.4723927 -1.938175
## Veillonella_parvula -0.4723927 -1.938175
## Veillonella_sp_T11011_6 -0.4723927 -1.938175
## Anaerococcus_nagyae -0.4723927 -1.938175
## Finegoldia_magna 6.8684429 -1.938175
## Parvimonas_micra -0.4723927 -1.938175
## Parvimonas_sp_oral_taxon_110 -0.4723927 -1.938175
## Parvimonas_sp_oral_taxon_393 -0.4723927 -1.938175
## Fusobacterium_nucleatum -0.4723927 -1.938175
## Leptotrichia_wadei -0.4723927 -1.938175
## Gemmata_obscuriglobus -0.4723927 -1.938175
## Paludisphaera_borealis -0.4723927 5.269685
## Achromobacter_xylosoxidans -0.4723927 -1.938175
## Cupriavidus_sp -0.4723927 8.384977
## Sutterella_parvirubra -0.4723927 5.252501
## Anaerobiospirillum_thomasii -0.4723927 -1.938175
## Cardiobacterium_hominis -0.4723927 -1.938175
## Cardiobacterium_valvarum -0.4723927 -1.938175
## Alkalilimnicola_ehrlichii -0.4723927 8.493939
## Escherichia_coli -0.4723927 14.771454
## Thiohalorhabdus_denitrificans -0.4723927 7.723687
## Pseudomonas_aeruginosa -0.4723927 13.767945
## Acholeplasma_oculi -0.4723927 2.324505
## Candida_albicans -0.4723927 -1.938175
## Candida_dubliniensis -0.4723927 -1.938175
## Candida_parapsilosis -0.4723927 -1.938175
## Malassezia_restricta -0.4723927 -1.938175
## Nakamurella_silvestris -0.4723927 -1.938175
## Alloprevotella_tannerae 9.7684952 -1.938175
## Prevotella_jejuni -0.4723927 -1.938175
## Prevotella_pallens -0.4723927 -1.938175
## Prevotella_salivae -0.4723927 -1.938175
## Prevotella_sp_oral_taxon_306 8.7242544 -1.938175
## Prevotella_veroralis 8.6664517 -1.938175
## Tannerella_sp_oral_taxon_808 -0.4723927 -1.938175
## Tannerella_sp_oral_taxon_HOT_286 -0.4723927 -1.938175
## Capnocytophaga_gingivalis -0.4723927 -1.938175
## Bacillus_ginsengihumi -0.4723927 3.529885
## Listeria_floridensis -0.4723927 8.960285
## Agitococcus_lubricus -0.4723927 5.022173
## Lactobacillus_fermentum -0.4723927 14.163076
## Lactobacillus_gasseri -0.4723927 -1.938175
## Sharpea_azabuensis -0.4723927 -1.938175
## Streptococcus_mutans -0.4723927 -1.938175
## Oribacterium_asaccharolyticum -0.4723927 -1.938175
## Megasphaera_micronuciformis -0.4723927 -1.938175
## Neisseria_flavescens -0.4723927 -1.938175
## Neisseria_subflava -0.4723927 -1.938175
## Stenotrophomonas_maltophilia -0.4723927 -1.938175
## Stenotrophomonas_pavanii -0.4723927 -1.938175
## Stenotrophomonas_rhizophila -0.4723927 -1.938175
## Bacillus_intestinalis -0.4723927 13.408170
## Listeria_innocua -0.4723927 4.080418
## Listeria_monocytogenes -0.4723927 12.882280
## Staphylococcus_haemolyticus -0.4723927 -1.938175
## Streptococcus_sobrinus -0.4723927 -1.938175
## Eggerthia_catenaformis -0.4723927 -1.938175
## Leptotrichia_sp_oral_taxon_498 -0.4723927 -1.938175
## Rickettsia_felis -0.4723927 -1.938175
## Haemophilus_parainfluenzae -0.4723927 -1.938175
## Candida_orthopsilosis -0.4723927 -1.938175
## Nannocystis_exedens -0.4723927 5.168431
## Campylobacter_concisus -0.4723927 -1.938175
## Franconibacter_helveticus -0.4723927 6.244943
## Klebsiella_pneumoniae -0.4723927 8.499493
## Salmonella_enterica -0.4723927 14.668555
## Superficieibacter_electus -0.4723927 5.514228
## Pseudomonas_fluorescens -0.4723927 5.869742
## Saccharomyces_cerevisiae -0.4723927 11.065371
## S._cerevisiae x S._kudriavzevii -0.4723927 6.133668
## Saccharomyces_kudriavzevii -0.4723927 3.521411
## Cryptococcus_gattii_VGI -0.4723927 7.245719
## Cryptococcus_gattii_VGII -0.4723927 8.661281
## Cryptococcus_gattii_VGIII -0.4723927 8.275404
## Cryptococcus_neoformans -0.4723927 9.514406
## Listeria_marthii -0.4723927 -1.938175
## Erwinia_persicina -0.4723927 -1.938175
## Pseudomonas_formosensis -0.4723927 -1.938175
## Pseudomonas_putida -0.4723927 -1.938175
## POS_EXT_20230119_5 hostzero_pos_5
## Actinobaculum_sp_oral_taxon_183 -1.936837 -1.351706
## Actinomyces_georgiae -1.936837 -1.351706
## Actinomyces_graevenitzii -1.936837 -1.351706
## Actinomyces_hongkongensis -1.936837 -1.351706
## Actinomyces_johnsonii -1.936837 -1.351706
## Actinomyces_massiliensis -1.936837 -1.351706
## Actinomyces_meyeri -1.936837 -1.351706
## Actinomyces_naeslundii -1.936837 -1.351706
## Actinomyces_odontolyticus -1.936837 -1.351706
## Actinomyces_oris -1.936837 -1.351706
## Actinomyces_sp_HMSC035G02 -1.936837 -1.351706
## Actinomyces_sp_HPA0247 -1.936837 -1.351706
## Actinomyces_sp_ICM47 -1.936837 -1.351706
## Actinomyces_sp_S6_Spd3 -1.936837 -1.351706
## Actinomyces_sp_oral_taxon_170 -1.936837 -1.351706
## Actinomyces_sp_oral_taxon_180 -1.936837 -1.351706
## Actinomyces_sp_oral_taxon_181 -1.936837 -1.351706
## Actinomyces_sp_oral_taxon_414 -1.936837 -1.351706
## Actinomyces_sp_oral_taxon_448 -1.936837 -1.351706
## Actinomyces_sp_oral_taxon_897 -1.936837 -1.351706
## Actinomyces_viscosus -1.936837 -1.351706
## Aeriscardovia_aeriphila -1.936837 -1.351706
## Alloscardovia_omnicolens -1.936837 -1.351706
## Bifidobacterium_dentium -1.936837 -1.351706
## Bifidobacterium_longum -1.936837 -1.351706
## Scardovia_wiggsiae -1.936837 -1.351706
## Corynebacterium_accolens -1.936837 -1.351706
## Corynebacterium_atypicum -1.936837 -1.351706
## Corynebacterium_durum -1.936837 -1.351706
## Corynebacterium_matruchotii -1.936837 -1.351706
## Corynebacterium_pseudodiphtheriticum -1.936837 -1.351706
## Corynebacterium_pseudogenitalium -1.936837 -1.351706
## Corynebacterium_tuberculostearicum -1.936837 -1.351706
## Rothia_aeria -1.936837 -1.351706
## Rothia_dentocariosa -1.936837 -1.351706
## Rothia_mucilaginosa -1.936837 -1.351706
## Cutibacterium_acnes -1.936837 -1.351706
## Cutibacterium_granulosum -1.936837 -1.351706
## Propionibacterium_humerusii -1.936837 -1.351706
## Propionibacterium_namnetense -1.936837 -1.351706
## Propionibacterium_acidifaciens -1.936837 -1.351706
## Pseudopropionibacterium_propionicum -1.936837 -1.351706
## Atopobium_deltae -1.936837 -1.351706
## Atopobium_parvulum -1.936837 -1.351706
## Atopobium_rimae -1.936837 -1.351706
## Olsenella_profusa -1.936837 -1.351706
## Olsenella_scatoligenes -1.936837 -1.351706
## Olsenella_uli -1.936837 -1.351706
## Collinsella_aerofaciens -1.936837 -1.351706
## Collinsella_intestinalis -1.936837 -1.351706
## Collinsella_stercoris -1.936837 -1.351706
## Enorma_massiliensis -1.936837 -1.351706
## [Collinsella]_massiliensis -1.936837 -1.351706
## Asaccharobacter_celatus -1.936837 -1.351706
## Denitrobacterium_detoxificans -1.936837 -1.351706
## Enterorhabdus_caecimuris -1.936837 -1.351706
## Slackia_exigua -1.936837 -1.351706
## Slackia_isoflavoniconvertens -1.936837 -1.351706
## Rubrobacter_radiotolerans -1.936837 -1.351706
## Thermoleophilum_album 4.710851 -1.351706
## Porphyromonas_endodontalis -1.936837 -1.351706
## Porphyromonas_somerae -1.936837 -1.351706
## Prevotella_histicola -1.936837 -1.351706
## Prevotella_melaninogenica -1.936837 -1.351706
## Prevotella_oris -1.936837 -1.351706
## Kouleothrix_aurantiaca -1.936837 -1.351706
## Hydrogenibacillus_schlegelii 5.367679 -1.351706
## Gemella_asaccharolytica -1.936837 -1.351706
## Gemella_bergeri -1.936837 -1.351706
## Gemella_haemolysans 8.725304 10.789508
## Gemella_morbillorum -1.936837 -1.351706
## Gemella_sanguinis 6.654350 8.873756
## Brochothrix_campestris 6.024533 7.711293
## Staphylococcus_argenteus 10.019941 12.996616
## Staphylococcus_aureus 12.640421 15.777715
## Staphylococcus_epidermidis -1.936837 4.739603
## Staphylococcus_schweitzeri 8.070380 10.996968
## Abiotrophia_defectiva -1.936837 -1.351706
## Abiotrophia_sp_HMSC24B09 -1.936837 -1.351706
## Dolosigranulum_pigrum -1.936837 -1.351706
## Granulicatella_adiacens -1.936837 -1.351706
## Granulicatella_elegans 2.763643 -1.351706
## Enterococcus_faecalis 12.702946 8.032839
## Lactobacillus_rhamnosus -1.936837 -1.351706
## Streptococcus_anginosus -1.936837 -1.351706
## Streptococcus_australis -1.936837 -1.351706
## Streptococcus_cristatus -1.936837 -1.351706
## Streptococcus_gordonii -1.936837 -1.351706
## Streptococcus_infantis -1.936837 -1.351706
## Streptococcus_milleri -1.936837 -1.351706
## Streptococcus_mitis -1.936837 -1.351706
## Streptococcus_oralis -1.936837 -1.351706
## Streptococcus_parasanguinis -1.936837 -1.351706
## Streptococcus_peroris -1.936837 -1.351706
## Streptococcus_pneumoniae -1.936837 -1.351706
## Streptococcus_pseudopneumoniae -1.936837 -1.351706
## Streptococcus_salivarius -1.936837 -1.351706
## Streptococcus_sanguinis -1.936837 -1.351706
## Streptococcus_sp_A12 -1.936837 -1.351706
## Streptococcus_sp_F0442 -1.936837 -1.351706
## Streptococcus_sp_HMSC034E03 -1.936837 -1.351706
## Streptococcus_sp_HMSC067H01 -1.936837 -1.351706
## Streptococcus_sp_HMSC071D03 -1.936837 -1.351706
## Streptococcus_sp_HPH0090 -1.936837 -1.351706
## Streptococcus_sp_M334 -1.936837 -1.351706
## Streptococcus_vestibularis -1.936837 -1.351706
## Eubacterium_brachy -1.936837 -1.351706
## Eubacterium_infirmum -1.936837 -1.351706
## Eubacterium_nodatum -1.936837 -1.351706
## Eubacterium_sulci -1.936837 -1.351706
## Mogibacterium_diversum -1.936837 -1.351706
## Mogibacterium_pumilum -1.936837 -1.351706
## Mogibacterium_timidum -1.936837 -1.351706
## Lachnoanaerobaculum_saburreum -1.936837 -1.351706
## Oribacterium_parvum -1.936837 -1.351706
## Oribacterium_sinus -1.936837 -1.351706
## Oribacterium_sp_oral_taxon_078 -1.936837 -1.351706
## Stomatobaculum_longum -1.936837 -1.351706
## Peptostreptococcus_stomatis -1.936837 -1.351706
## Bulleidia_extructa -1.936837 -1.351706
## Solobacterium_moorei -1.936837 -1.351706
## Limnochorda_pilosa 4.383931 -1.351706
## Veillonella_atypica -1.936837 -1.351706
## Veillonella_dispar -1.936837 -1.351706
## Veillonella_infantium -1.936837 -1.351706
## Veillonella_parvula -1.936837 -1.351706
## Veillonella_sp_T11011_6 -1.936837 -1.351706
## Anaerococcus_nagyae -1.936837 -1.351706
## Finegoldia_magna -1.936837 -1.351706
## Parvimonas_micra -1.936837 -1.351706
## Parvimonas_sp_oral_taxon_110 -1.936837 -1.351706
## Parvimonas_sp_oral_taxon_393 -1.936837 -1.351706
## Fusobacterium_nucleatum -1.936837 -1.351706
## Leptotrichia_wadei -1.936837 -1.351706
## Gemmata_obscuriglobus -1.936837 -1.351706
## Paludisphaera_borealis 4.871098 -1.351706
## Achromobacter_xylosoxidans -1.936837 -1.351706
## Cupriavidus_sp -1.936837 -1.351706
## Sutterella_parvirubra 6.625521 -1.351706
## Anaerobiospirillum_thomasii -1.936837 -1.351706
## Cardiobacterium_hominis -1.936837 -1.351706
## Cardiobacterium_valvarum -1.936837 -1.351706
## Alkalilimnicola_ehrlichii 8.211242 -1.351706
## Escherichia_coli 14.609489 -1.351706
## Thiohalorhabdus_denitrificans 7.470221 -1.351706
## Pseudomonas_aeruginosa 13.228238 -1.351706
## Acholeplasma_oculi -1.936837 5.819950
## Candida_albicans -1.936837 -1.351706
## Candida_dubliniensis -1.936837 -1.351706
## Candida_parapsilosis -1.936837 -1.351706
## Malassezia_restricta -1.936837 -1.351706
## Nakamurella_silvestris -1.936837 -1.351706
## Alloprevotella_tannerae -1.936837 -1.351706
## Prevotella_jejuni -1.936837 -1.351706
## Prevotella_pallens -1.936837 -1.351706
## Prevotella_salivae -1.936837 -1.351706
## Prevotella_sp_oral_taxon_306 -1.936837 -1.351706
## Prevotella_veroralis -1.936837 -1.351706
## Tannerella_sp_oral_taxon_808 -1.936837 -1.351706
## Tannerella_sp_oral_taxon_HOT_286 -1.936837 -1.351706
## Capnocytophaga_gingivalis -1.936837 -1.351706
## Bacillus_ginsengihumi 4.962886 7.532211
## Listeria_floridensis 9.015652 11.885162
## Agitococcus_lubricus 5.698950 -1.351706
## Lactobacillus_fermentum 12.974097 15.464433
## Lactobacillus_gasseri -1.936837 -1.351706
## Sharpea_azabuensis -1.936837 -1.351706
## Streptococcus_mutans -1.936837 -1.351706
## Oribacterium_asaccharolyticum -1.936837 -1.351706
## Megasphaera_micronuciformis -1.936837 -1.351706
## Neisseria_flavescens -1.936837 -1.351706
## Neisseria_subflava -1.936837 -1.351706
## Stenotrophomonas_maltophilia -1.936837 -1.351706
## Stenotrophomonas_pavanii -1.936837 -1.351706
## Stenotrophomonas_rhizophila -1.936837 -1.351706
## Bacillus_intestinalis 13.763721 13.910373
## Listeria_innocua 4.774903 6.458241
## Listeria_monocytogenes 12.545134 15.642898
## Staphylococcus_haemolyticus -1.936837 -1.351706
## Streptococcus_sobrinus -1.936837 -1.351706
## Eggerthia_catenaformis -1.936837 -1.351706
## Leptotrichia_sp_oral_taxon_498 -1.936837 -1.351706
## Rickettsia_felis -1.936837 -1.351706
## Haemophilus_parainfluenzae -1.936837 -1.351706
## Candida_orthopsilosis -1.936837 -1.351706
## Nannocystis_exedens 4.305386 -1.351706
## Campylobacter_concisus -1.936837 -1.351706
## Franconibacter_helveticus 6.889017 -1.351706
## Klebsiella_pneumoniae 8.606186 -1.351706
## Salmonella_enterica 14.265344 -1.351706
## Superficieibacter_electus 6.997618 -1.351706
## Pseudomonas_fluorescens 5.463784 -1.351706
## Saccharomyces_cerevisiae 10.846947 13.406773
## S._cerevisiae x S._kudriavzevii 6.102320 9.454318
## Saccharomyces_kudriavzevii 6.180774 9.029753
## Cryptococcus_gattii_VGI 8.122500 11.718635
## Cryptococcus_gattii_VGII 9.100871 12.320431
## Cryptococcus_gattii_VGIII 9.882462 12.145138
## Cryptococcus_neoformans 10.553418 13.294233
## Listeria_marthii -1.936837 5.306305
## Erwinia_persicina 4.846488 -1.351706
## Pseudomonas_formosensis -1.936837 -1.351706
## Pseudomonas_putida 4.663033 -1.351706
## POS_EXT_20230119_4 hostzero_pos_4
## Actinobaculum_sp_oral_taxon_183 -2.063017 -1.397068
## Actinomyces_georgiae -2.063017 -1.397068
## Actinomyces_graevenitzii -2.063017 -1.397068
## Actinomyces_hongkongensis -2.063017 -1.397068
## Actinomyces_johnsonii -2.063017 -1.397068
## Actinomyces_massiliensis -2.063017 -1.397068
## Actinomyces_meyeri -2.063017 -1.397068
## Actinomyces_naeslundii -2.063017 -1.397068
## Actinomyces_odontolyticus -2.063017 -1.397068
## Actinomyces_oris -2.063017 -1.397068
## Actinomyces_sp_HMSC035G02 -2.063017 -1.397068
## Actinomyces_sp_HPA0247 -2.063017 -1.397068
## Actinomyces_sp_ICM47 -2.063017 -1.397068
## Actinomyces_sp_S6_Spd3 -2.063017 -1.397068
## Actinomyces_sp_oral_taxon_170 -2.063017 -1.397068
## Actinomyces_sp_oral_taxon_180 -2.063017 -1.397068
## Actinomyces_sp_oral_taxon_181 -2.063017 -1.397068
## Actinomyces_sp_oral_taxon_414 -2.063017 -1.397068
## Actinomyces_sp_oral_taxon_448 -2.063017 -1.397068
## Actinomyces_sp_oral_taxon_897 -2.063017 -1.397068
## Actinomyces_viscosus -2.063017 -1.397068
## Aeriscardovia_aeriphila -2.063017 -1.397068
## Alloscardovia_omnicolens -2.063017 -1.397068
## Bifidobacterium_dentium -2.063017 -1.397068
## Bifidobacterium_longum -2.063017 -1.397068
## Scardovia_wiggsiae -2.063017 -1.397068
## Corynebacterium_accolens -2.063017 -1.397068
## Corynebacterium_atypicum -2.063017 -1.397068
## Corynebacterium_durum -2.063017 -1.397068
## Corynebacterium_matruchotii -2.063017 -1.397068
## Corynebacterium_pseudodiphtheriticum -2.063017 -1.397068
## Corynebacterium_pseudogenitalium -2.063017 -1.397068
## Corynebacterium_tuberculostearicum -2.063017 -1.397068
## Rothia_aeria -2.063017 -1.397068
## Rothia_dentocariosa -2.063017 -1.397068
## Rothia_mucilaginosa -2.063017 -1.397068
## Cutibacterium_acnes -2.063017 -1.397068
## Cutibacterium_granulosum -2.063017 -1.397068
## Propionibacterium_humerusii -2.063017 -1.397068
## Propionibacterium_namnetense -2.063017 -1.397068
## Propionibacterium_acidifaciens -2.063017 -1.397068
## Pseudopropionibacterium_propionicum -2.063017 -1.397068
## Atopobium_deltae -2.063017 -1.397068
## Atopobium_parvulum -2.063017 -1.397068
## Atopobium_rimae -2.063017 -1.397068
## Olsenella_profusa -2.063017 -1.397068
## Olsenella_scatoligenes -2.063017 -1.397068
## Olsenella_uli -2.063017 -1.397068
## Collinsella_aerofaciens -2.063017 -1.397068
## Collinsella_intestinalis -2.063017 -1.397068
## Collinsella_stercoris -2.063017 -1.397068
## Enorma_massiliensis -2.063017 -1.397068
## [Collinsella]_massiliensis -2.063017 -1.397068
## Asaccharobacter_celatus -2.063017 -1.397068
## Denitrobacterium_detoxificans -2.063017 -1.397068
## Enterorhabdus_caecimuris -2.063017 -1.397068
## Slackia_exigua -2.063017 -1.397068
## Slackia_isoflavoniconvertens -2.063017 -1.397068
## Rubrobacter_radiotolerans -2.063017 -1.397068
## Thermoleophilum_album 4.479455 -1.397068
## Porphyromonas_endodontalis -2.063017 -1.397068
## Porphyromonas_somerae -2.063017 -1.397068
## Prevotella_histicola -2.063017 -1.397068
## Prevotella_melaninogenica -2.063017 -1.397068
## Prevotella_oris -2.063017 -1.397068
## Kouleothrix_aurantiaca 3.673556 -1.397068
## Hydrogenibacillus_schlegelii 4.981888 -1.397068
## Gemella_asaccharolytica -2.063017 -1.397068
## Gemella_bergeri -2.063017 -1.397068
## Gemella_haemolysans 8.982398 10.114887
## Gemella_morbillorum -2.063017 -1.397068
## Gemella_sanguinis 6.528170 8.803073
## Brochothrix_campestris 5.322214 7.723566
## Staphylococcus_argenteus 10.350627 12.650947
## Staphylococcus_aureus 13.054542 15.386739
## Staphylococcus_epidermidis -2.063017 4.755664
## Staphylococcus_schweitzeri 8.240454 10.700294
## Abiotrophia_defectiva -2.063017 -1.397068
## Abiotrophia_sp_HMSC24B09 -2.063017 -1.397068
## Dolosigranulum_pigrum -2.063017 -1.397068
## Granulicatella_adiacens -2.063017 -1.397068
## Granulicatella_elegans 2.628331 3.690528
## Enterococcus_faecalis 13.085154 13.030571
## Lactobacillus_rhamnosus -2.063017 -1.397068
## Streptococcus_anginosus -2.063017 -1.397068
## Streptococcus_australis -2.063017 -1.397068
## Streptococcus_cristatus -2.063017 -1.397068
## Streptococcus_gordonii -2.063017 -1.397068
## Streptococcus_infantis -2.063017 -1.397068
## Streptococcus_milleri -2.063017 -1.397068
## Streptococcus_mitis -2.063017 -1.397068
## Streptococcus_oralis -2.063017 -1.397068
## Streptococcus_parasanguinis -2.063017 -1.397068
## Streptococcus_peroris -2.063017 -1.397068
## Streptococcus_pneumoniae -2.063017 -1.397068
## Streptococcus_pseudopneumoniae -2.063017 -1.397068
## Streptococcus_salivarius -2.063017 -1.397068
## Streptococcus_sanguinis -2.063017 -1.397068
## Streptococcus_sp_A12 -2.063017 -1.397068
## Streptococcus_sp_F0442 -2.063017 -1.397068
## Streptococcus_sp_HMSC034E03 -2.063017 -1.397068
## Streptococcus_sp_HMSC067H01 -2.063017 -1.397068
## Streptococcus_sp_HMSC071D03 -2.063017 -1.397068
## Streptococcus_sp_HPH0090 -2.063017 -1.397068
## Streptococcus_sp_M334 -2.063017 -1.397068
## Streptococcus_vestibularis -2.063017 -1.397068
## Eubacterium_brachy -2.063017 -1.397068
## Eubacterium_infirmum -2.063017 -1.397068
## Eubacterium_nodatum -2.063017 -1.397068
## Eubacterium_sulci -2.063017 -1.397068
## Mogibacterium_diversum -2.063017 -1.397068
## Mogibacterium_pumilum -2.063017 -1.397068
## Mogibacterium_timidum -2.063017 -1.397068
## Lachnoanaerobaculum_saburreum -2.063017 -1.397068
## Oribacterium_parvum -2.063017 -1.397068
## Oribacterium_sinus -2.063017 -1.397068
## Oribacterium_sp_oral_taxon_078 -2.063017 -1.397068
## Stomatobaculum_longum -2.063017 -1.397068
## Peptostreptococcus_stomatis -2.063017 -1.397068
## Bulleidia_extructa -2.063017 -1.397068
## Solobacterium_moorei -2.063017 -1.397068
## Limnochorda_pilosa 3.930945 -1.397068
## Veillonella_atypica -2.063017 -1.397068
## Veillonella_dispar -2.063017 -1.397068
## Veillonella_infantium -2.063017 -1.397068
## Veillonella_parvula -2.063017 -1.397068
## Veillonella_sp_T11011_6 -2.063017 -1.397068
## Anaerococcus_nagyae -2.063017 -1.397068
## Finegoldia_magna -2.063017 -1.397068
## Parvimonas_micra -2.063017 -1.397068
## Parvimonas_sp_oral_taxon_110 -2.063017 -1.397068
## Parvimonas_sp_oral_taxon_393 -2.063017 -1.397068
## Fusobacterium_nucleatum -2.063017 -1.397068
## Leptotrichia_wadei -2.063017 -1.397068
## Gemmata_obscuriglobus -2.063017 -1.397068
## Paludisphaera_borealis 4.192733 -1.397068
## Achromobacter_xylosoxidans -2.063017 -1.397068
## Cupriavidus_sp -2.063017 -1.397068
## Sutterella_parvirubra 6.924930 -1.397068
## Anaerobiospirillum_thomasii 5.128413 -1.397068
## Cardiobacterium_hominis -2.063017 -1.397068
## Cardiobacterium_valvarum -2.063017 -1.397068
## Alkalilimnicola_ehrlichii 8.048460 -1.397068
## Escherichia_coli 14.878762 -1.397068
## Thiohalorhabdus_denitrificans 7.794898 -1.397068
## Pseudomonas_aeruginosa 13.565697 -1.397068
## Acholeplasma_oculi 3.240288 5.695505
## Candida_albicans -2.063017 -1.397068
## Candida_dubliniensis -2.063017 -1.397068
## Candida_parapsilosis -2.063017 -1.397068
## Malassezia_restricta -2.063017 -1.397068
## Nakamurella_silvestris -2.063017 -1.397068
## Alloprevotella_tannerae -2.063017 -1.397068
## Prevotella_jejuni -2.063017 -1.397068
## Prevotella_pallens -2.063017 -1.397068
## Prevotella_salivae -2.063017 -1.397068
## Prevotella_sp_oral_taxon_306 -2.063017 -1.397068
## Prevotella_veroralis -2.063017 -1.397068
## Tannerella_sp_oral_taxon_808 -2.063017 -1.397068
## Tannerella_sp_oral_taxon_HOT_286 -2.063017 -1.397068
## Capnocytophaga_gingivalis -2.063017 -1.397068
## Bacillus_ginsengihumi 5.594739 6.884656
## Listeria_floridensis 9.594260 11.968109
## Agitococcus_lubricus 5.572770 -1.397068
## Lactobacillus_fermentum 13.081833 15.250399
## Lactobacillus_gasseri -2.063017 -1.397068
## Sharpea_azabuensis -2.063017 -1.397068
## Streptococcus_mutans -2.063017 -1.397068
## Oribacterium_asaccharolyticum -2.063017 -1.397068
## Megasphaera_micronuciformis -2.063017 -1.397068
## Neisseria_flavescens -2.063017 -1.397068
## Neisseria_subflava -2.063017 -1.397068
## Stenotrophomonas_maltophilia -2.063017 -1.397068
## Stenotrophomonas_pavanii -2.063017 -1.397068
## Stenotrophomonas_rhizophila -2.063017 -1.397068
## Bacillus_intestinalis 14.213887 14.247479
## Listeria_innocua -2.063017 6.700358
## Listeria_monocytogenes 13.350485 15.775476
## Staphylococcus_haemolyticus -2.063017 -1.397068
## Streptococcus_sobrinus -2.063017 -1.397068
## Eggerthia_catenaformis -2.063017 -1.397068
## Leptotrichia_sp_oral_taxon_498 -2.063017 -1.397068
## Rickettsia_felis -2.063017 -1.397068
## Haemophilus_parainfluenzae -2.063017 -1.397068
## Candida_orthopsilosis -2.063017 -1.397068
## Nannocystis_exedens 4.635251 -1.397068
## Campylobacter_concisus -2.063017 -1.397068
## Franconibacter_helveticus 6.975467 -1.397068
## Klebsiella_pneumoniae 8.074554 -1.397068
## Salmonella_enterica 14.657671 -1.397068
## Superficieibacter_electus 6.478674 -1.397068
## Pseudomonas_fluorescens 5.692751 -1.397068
## Saccharomyces_cerevisiae 11.642319 13.259625
## S._cerevisiae x S._kudriavzevii 7.348467 9.379552
## Saccharomyces_kudriavzevii 7.269187 8.815520
## Cryptococcus_gattii_VGI 9.297806 11.363119
## Cryptococcus_gattii_VGII 10.145867 12.058846
## Cryptococcus_gattii_VGIII 9.957925 12.192485
## Cryptococcus_neoformans 11.259466 13.268711
## Listeria_marthii -2.063017 6.359127
## Erwinia_persicina 4.938229 -1.397068
## Pseudomonas_formosensis -2.063017 -1.397068
## Pseudomonas_putida 5.395170 -1.397068
## hostzero_pos_3 hostzero_pos_2
## Actinobaculum_sp_oral_taxon_183 -1.335995 -1.629199
## Actinomyces_georgiae -1.335995 -1.629199
## Actinomyces_graevenitzii -1.335995 -1.629199
## Actinomyces_hongkongensis -1.335995 -1.629199
## Actinomyces_johnsonii -1.335995 -1.629199
## Actinomyces_massiliensis -1.335995 -1.629199
## Actinomyces_meyeri -1.335995 -1.629199
## Actinomyces_naeslundii -1.335995 -1.629199
## Actinomyces_odontolyticus -1.335995 -1.629199
## Actinomyces_oris -1.335995 -1.629199
## Actinomyces_sp_HMSC035G02 -1.335995 -1.629199
## Actinomyces_sp_HPA0247 -1.335995 -1.629199
## Actinomyces_sp_ICM47 -1.335995 -1.629199
## Actinomyces_sp_S6_Spd3 -1.335995 -1.629199
## Actinomyces_sp_oral_taxon_170 -1.335995 -1.629199
## Actinomyces_sp_oral_taxon_180 -1.335995 -1.629199
## Actinomyces_sp_oral_taxon_181 -1.335995 -1.629199
## Actinomyces_sp_oral_taxon_414 -1.335995 -1.629199
## Actinomyces_sp_oral_taxon_448 -1.335995 -1.629199
## Actinomyces_sp_oral_taxon_897 -1.335995 -1.629199
## Actinomyces_viscosus -1.335995 -1.629199
## Aeriscardovia_aeriphila -1.335995 3.900230
## Alloscardovia_omnicolens -1.335995 -1.629199
## Bifidobacterium_dentium -1.335995 -1.629199
## Bifidobacterium_longum -1.335995 -1.629199
## Scardovia_wiggsiae -1.335995 -1.629199
## Corynebacterium_accolens -1.335995 -1.629199
## Corynebacterium_atypicum -1.335995 -1.629199
## Corynebacterium_durum -1.335995 -1.629199
## Corynebacterium_matruchotii -1.335995 -1.629199
## Corynebacterium_pseudodiphtheriticum -1.335995 -1.629199
## Corynebacterium_pseudogenitalium -1.335995 -1.629199
## Corynebacterium_tuberculostearicum -1.335995 3.427047
## Rothia_aeria -1.335995 -1.629199
## Rothia_dentocariosa -1.335995 7.720294
## Rothia_mucilaginosa -1.335995 -1.629199
## Cutibacterium_acnes -1.335995 5.527757
## Cutibacterium_granulosum -1.335995 -1.629199
## Propionibacterium_humerusii -1.335995 -1.629199
## Propionibacterium_namnetense -1.335995 -1.629199
## Propionibacterium_acidifaciens -1.335995 -1.629199
## Pseudopropionibacterium_propionicum -1.335995 -1.629199
## Atopobium_deltae -1.335995 -1.629199
## Atopobium_parvulum -1.335995 -1.629199
## Atopobium_rimae -1.335995 -1.629199
## Olsenella_profusa -1.335995 -1.629199
## Olsenella_scatoligenes -1.335995 -1.629199
## Olsenella_uli -1.335995 -1.629199
## Collinsella_aerofaciens -1.335995 -1.629199
## Collinsella_intestinalis -1.335995 -1.629199
## Collinsella_stercoris -1.335995 -1.629199
## Enorma_massiliensis -1.335995 -1.629199
## [Collinsella]_massiliensis -1.335995 -1.629199
## Asaccharobacter_celatus -1.335995 -1.629199
## Denitrobacterium_detoxificans -1.335995 -1.629199
## Enterorhabdus_caecimuris -1.335995 -1.629199
## Slackia_exigua -1.335995 -1.629199
## Slackia_isoflavoniconvertens -1.335995 -1.629199
## Rubrobacter_radiotolerans -1.335995 -1.629199
## Thermoleophilum_album -1.335995 -1.629199
## Porphyromonas_endodontalis -1.335995 -1.629199
## Porphyromonas_somerae -1.335995 -1.629199
## Prevotella_histicola -1.335995 -1.629199
## Prevotella_melaninogenica -1.335995 -1.629199
## Prevotella_oris -1.335995 -1.629199
## Kouleothrix_aurantiaca -1.335995 -1.629199
## Hydrogenibacillus_schlegelii -1.335995 -1.629199
## Gemella_asaccharolytica -1.335995 -1.629199
## Gemella_bergeri -1.335995 -1.629199
## Gemella_haemolysans 10.657064 10.772486
## Gemella_morbillorum -1.335995 -1.629199
## Gemella_sanguinis 8.916881 8.796944
## Brochothrix_campestris 7.240033 7.177824
## Staphylococcus_argenteus 12.960333 13.028003
## Staphylococcus_aureus 15.698003 15.741254
## Staphylococcus_epidermidis 6.190184 6.785518
## Staphylococcus_schweitzeri 10.847131 10.894028
## Abiotrophia_defectiva -1.335995 -1.629199
## Abiotrophia_sp_HMSC24B09 -1.335995 -1.629199
## Dolosigranulum_pigrum -1.335995 -1.629199
## Granulicatella_adiacens -1.335995 -1.629199
## Granulicatella_elegans -1.335995 -1.629199
## Enterococcus_faecalis 7.000874 6.513446
## Lactobacillus_rhamnosus -1.335995 -1.629199
## Streptococcus_anginosus -1.335995 -1.629199
## Streptococcus_australis -1.335995 -1.629199
## Streptococcus_cristatus -1.335995 -1.629199
## Streptococcus_gordonii -1.335995 -1.629199
## Streptococcus_infantis -1.335995 -1.629199
## Streptococcus_milleri -1.335995 -1.629199
## Streptococcus_mitis -1.335995 -1.629199
## Streptococcus_oralis -1.335995 2.008387
## Streptococcus_parasanguinis -1.335995 -1.629199
## Streptococcus_peroris -1.335995 -1.629199
## Streptococcus_pneumoniae -1.335995 -1.629199
## Streptococcus_pseudopneumoniae -1.335995 -1.629199
## Streptococcus_salivarius -1.335995 -1.629199
## Streptococcus_sanguinis -1.335995 6.020494
## Streptococcus_sp_A12 -1.335995 -1.629199
## Streptococcus_sp_F0442 -1.335995 -1.629199
## Streptococcus_sp_HMSC034E03 -1.335995 -1.629199
## Streptococcus_sp_HMSC067H01 -1.335995 -1.629199
## Streptococcus_sp_HMSC071D03 -1.335995 -1.629199
## Streptococcus_sp_HPH0090 -1.335995 -1.629199
## Streptococcus_sp_M334 -1.335995 -1.629199
## Streptococcus_vestibularis -1.335995 -1.629199
## Eubacterium_brachy -1.335995 -1.629199
## Eubacterium_infirmum -1.335995 -1.629199
## Eubacterium_nodatum -1.335995 -1.629199
## Eubacterium_sulci -1.335995 -1.629199
## Mogibacterium_diversum -1.335995 -1.629199
## Mogibacterium_pumilum -1.335995 -1.629199
## Mogibacterium_timidum -1.335995 -1.629199
## Lachnoanaerobaculum_saburreum -1.335995 -1.629199
## Oribacterium_parvum -1.335995 -1.629199
## Oribacterium_sinus -1.335995 -1.629199
## Oribacterium_sp_oral_taxon_078 -1.335995 -1.629199
## Stomatobaculum_longum -1.335995 -1.629199
## Peptostreptococcus_stomatis -1.335995 -1.629199
## Bulleidia_extructa -1.335995 -1.629199
## Solobacterium_moorei -1.335995 -1.629199
## Limnochorda_pilosa -1.335995 -1.629199
## Veillonella_atypica -1.335995 -1.629199
## Veillonella_dispar -1.335995 -1.629199
## Veillonella_infantium -1.335995 -1.629199
## Veillonella_parvula -1.335995 -1.629199
## Veillonella_sp_T11011_6 -1.335995 -1.629199
## Anaerococcus_nagyae -1.335995 -1.629199
## Finegoldia_magna -1.335995 5.739141
## Parvimonas_micra -1.335995 -1.629199
## Parvimonas_sp_oral_taxon_110 -1.335995 -1.629199
## Parvimonas_sp_oral_taxon_393 -1.335995 -1.629199
## Fusobacterium_nucleatum -1.335995 -1.629199
## Leptotrichia_wadei -1.335995 -1.629199
## Gemmata_obscuriglobus -1.335995 -1.629199
## Paludisphaera_borealis -1.335995 -1.629199
## Achromobacter_xylosoxidans -1.335995 -1.629199
## Cupriavidus_sp -1.335995 -1.629199
## Sutterella_parvirubra -1.335995 -1.629199
## Anaerobiospirillum_thomasii -1.335995 -1.629199
## Cardiobacterium_hominis -1.335995 -1.629199
## Cardiobacterium_valvarum -1.335995 -1.629199
## Alkalilimnicola_ehrlichii -1.335995 -1.629199
## Escherichia_coli 4.704259 -1.629199
## Thiohalorhabdus_denitrificans -1.335995 -1.629199
## Pseudomonas_aeruginosa -1.335995 -1.629199
## Acholeplasma_oculi 4.837791 5.082541
## Candida_albicans -1.335995 -1.629199
## Candida_dubliniensis -1.335995 -1.629199
## Candida_parapsilosis -1.335995 -1.629199
## Malassezia_restricta -1.335995 -1.629199
## Nakamurella_silvestris -1.335995 -1.629199
## Alloprevotella_tannerae -1.335995 -1.629199
## Prevotella_jejuni -1.335995 -1.629199
## Prevotella_pallens -1.335995 -1.629199
## Prevotella_salivae -1.335995 -1.629199
## Prevotella_sp_oral_taxon_306 -1.335995 -1.629199
## Prevotella_veroralis -1.335995 -1.629199
## Tannerella_sp_oral_taxon_808 -1.335995 -1.629199
## Tannerella_sp_oral_taxon_HOT_286 -1.335995 -1.629199
## Capnocytophaga_gingivalis -1.335995 -1.629199
## Bacillus_ginsengihumi 6.165087 6.617759
## Listeria_floridensis 11.771573 11.690051
## Agitococcus_lubricus -1.335995 -1.629199
## Lactobacillus_fermentum 15.525902 15.495732
## Lactobacillus_gasseri -1.335995 -1.629199
## Sharpea_azabuensis -1.335995 -1.629199
## Streptococcus_mutans -1.335995 -1.629199
## Oribacterium_asaccharolyticum -1.335995 -1.629199
## Megasphaera_micronuciformis -1.335995 -1.629199
## Neisseria_flavescens -1.335995 -1.629199
## Neisseria_subflava -1.335995 -1.629199
## Stenotrophomonas_maltophilia -1.335995 -1.629199
## Stenotrophomonas_pavanii -1.335995 -1.629199
## Stenotrophomonas_rhizophila -1.335995 -1.629199
## Bacillus_intestinalis 13.787200 13.898000
## Listeria_innocua 7.389999 6.786626
## Listeria_monocytogenes 15.541175 15.466379
## Staphylococcus_haemolyticus -1.335995 7.562876
## Streptococcus_sobrinus -1.335995 -1.629199
## Eggerthia_catenaformis -1.335995 -1.629199
## Leptotrichia_sp_oral_taxon_498 -1.335995 -1.629199
## Rickettsia_felis -1.335995 -1.629199
## Haemophilus_parainfluenzae -1.335995 -1.629199
## Candida_orthopsilosis -1.335995 -1.629199
## Nannocystis_exedens -1.335995 -1.629199
## Campylobacter_concisus -1.335995 -1.629199
## Franconibacter_helveticus -1.335995 -1.629199
## Klebsiella_pneumoniae -1.335995 -1.629199
## Salmonella_enterica -1.335995 -1.629199
## Superficieibacter_electus -1.335995 -1.629199
## Pseudomonas_fluorescens -1.335995 -1.629199
## Saccharomyces_cerevisiae 13.223773 12.554081
## S._cerevisiae x S._kudriavzevii 9.290490 8.763421
## Saccharomyces_kudriavzevii 9.016496 8.054577
## Cryptococcus_gattii_VGI 11.636577 11.462664
## Cryptococcus_gattii_VGII 12.449801 11.948322
## Cryptococcus_gattii_VGIII 12.289368 11.933967
## Cryptococcus_neoformans 13.339148 13.149876
## Listeria_marthii -1.335995 5.702516
## Erwinia_persicina -1.335995 -1.629199
## Pseudomonas_formosensis -1.335995 -1.629199
## Pseudomonas_putida -1.335995 -1.629199
## hostzero_pos_1 qiaamp_pos_5 qiaamp_pos_4
## Actinobaculum_sp_oral_taxon_183 -1.431820 -1.483082 -1.517142
## Actinomyces_georgiae -1.431820 -1.483082 -1.517142
## Actinomyces_graevenitzii -1.431820 -1.483082 -1.517142
## Actinomyces_hongkongensis -1.431820 -1.483082 -1.517142
## Actinomyces_johnsonii -1.431820 -1.483082 -1.517142
## Actinomyces_massiliensis -1.431820 -1.483082 -1.517142
## Actinomyces_meyeri -1.431820 -1.483082 -1.517142
## Actinomyces_naeslundii -1.431820 -1.483082 -1.517142
## Actinomyces_odontolyticus -1.431820 -1.483082 -1.517142
## Actinomyces_oris -1.431820 -1.483082 -1.517142
## Actinomyces_sp_HMSC035G02 -1.431820 -1.483082 -1.517142
## Actinomyces_sp_HPA0247 -1.431820 -1.483082 -1.517142
## Actinomyces_sp_ICM47 -1.431820 -1.483082 -1.517142
## Actinomyces_sp_S6_Spd3 -1.431820 -1.483082 -1.517142
## Actinomyces_sp_oral_taxon_170 -1.431820 -1.483082 -1.517142
## Actinomyces_sp_oral_taxon_180 -1.431820 -1.483082 -1.517142
## Actinomyces_sp_oral_taxon_181 -1.431820 -1.483082 -1.517142
## Actinomyces_sp_oral_taxon_414 -1.431820 -1.483082 -1.517142
## Actinomyces_sp_oral_taxon_448 -1.431820 -1.483082 -1.517142
## Actinomyces_sp_oral_taxon_897 -1.431820 -1.483082 -1.517142
## Actinomyces_viscosus -1.431820 -1.483082 -1.517142
## Aeriscardovia_aeriphila -1.431820 -1.483082 -1.517142
## Alloscardovia_omnicolens -1.431820 -1.483082 -1.517142
## Bifidobacterium_dentium -1.431820 -1.483082 -1.517142
## Bifidobacterium_longum -1.431820 -1.483082 -1.517142
## Scardovia_wiggsiae -1.431820 -1.483082 -1.517142
## Corynebacterium_accolens -1.431820 -1.483082 -1.517142
## Corynebacterium_atypicum -1.431820 -1.483082 -1.517142
## Corynebacterium_durum -1.431820 -1.483082 -1.517142
## Corynebacterium_matruchotii -1.431820 -1.483082 -1.517142
## Corynebacterium_pseudodiphtheriticum -1.431820 -1.483082 -1.517142
## Corynebacterium_pseudogenitalium -1.431820 -1.483082 -1.517142
## Corynebacterium_tuberculostearicum -1.431820 -1.483082 -1.517142
## Rothia_aeria -1.431820 -1.483082 -1.517142
## Rothia_dentocariosa -1.431820 -1.483082 -1.517142
## Rothia_mucilaginosa -1.431820 -1.483082 -1.517142
## Cutibacterium_acnes -1.431820 -1.483082 -1.517142
## Cutibacterium_granulosum -1.431820 -1.483082 -1.517142
## Propionibacterium_humerusii -1.431820 -1.483082 -1.517142
## Propionibacterium_namnetense -1.431820 -1.483082 -1.517142
## Propionibacterium_acidifaciens -1.431820 -1.483082 -1.517142
## Pseudopropionibacterium_propionicum -1.431820 -1.483082 -1.517142
## Atopobium_deltae -1.431820 -1.483082 -1.517142
## Atopobium_parvulum -1.431820 -1.483082 -1.517142
## Atopobium_rimae -1.431820 -1.483082 -1.517142
## Olsenella_profusa -1.431820 -1.483082 -1.517142
## Olsenella_scatoligenes -1.431820 -1.483082 -1.517142
## Olsenella_uli -1.431820 -1.483082 -1.517142
## Collinsella_aerofaciens -1.431820 -1.483082 -1.517142
## Collinsella_intestinalis -1.431820 -1.483082 -1.517142
## Collinsella_stercoris -1.431820 -1.483082 -1.517142
## Enorma_massiliensis -1.431820 -1.483082 -1.517142
## [Collinsella]_massiliensis -1.431820 -1.483082 -1.517142
## Asaccharobacter_celatus -1.431820 -1.483082 -1.517142
## Denitrobacterium_detoxificans -1.431820 -1.483082 -1.517142
## Enterorhabdus_caecimuris -1.431820 -1.483082 -1.517142
## Slackia_exigua -1.431820 -1.483082 -1.517142
## Slackia_isoflavoniconvertens -1.431820 -1.483082 -1.517142
## Rubrobacter_radiotolerans -1.431820 -1.483082 -1.517142
## Thermoleophilum_album -1.431820 -1.483082 -1.517142
## Porphyromonas_endodontalis -1.431820 -1.483082 -1.517142
## Porphyromonas_somerae -1.431820 -1.483082 -1.517142
## Prevotella_histicola -1.431820 -1.483082 -1.517142
## Prevotella_melaninogenica -1.431820 -1.483082 -1.517142
## Prevotella_oris -1.431820 -1.483082 -1.517142
## Kouleothrix_aurantiaca -1.431820 -1.483082 -1.517142
## Hydrogenibacillus_schlegelii -1.431820 -1.483082 -1.517142
## Gemella_asaccharolytica -1.431820 -1.483082 -1.517142
## Gemella_bergeri -1.431820 -1.483082 -1.517142
## Gemella_haemolysans 10.523500 10.926282 11.035321
## Gemella_morbillorum -1.431820 -1.483082 -1.517142
## Gemella_sanguinis 9.122142 9.005411 9.204163
## Brochothrix_campestris 7.925042 7.095206 7.609925
## Staphylococcus_argenteus 12.910986 13.173270 13.232002
## Staphylococcus_aureus 15.761473 15.849620 15.967287
## Staphylococcus_epidermidis 6.651817 6.237380 5.729938
## Staphylococcus_schweitzeri 11.105238 11.026120 11.179545
## Abiotrophia_defectiva -1.431820 -1.483082 -1.517142
## Abiotrophia_sp_HMSC24B09 -1.431820 -1.483082 -1.517142
## Dolosigranulum_pigrum -1.431820 -1.483082 -1.517142
## Granulicatella_adiacens -1.431820 -1.483082 -1.517142
## Granulicatella_elegans 3.649584 -1.483082 -1.517142
## Enterococcus_faecalis 12.153000 8.004739 8.200317
## Lactobacillus_rhamnosus -1.431820 -1.483082 -1.517142
## Streptococcus_anginosus -1.431820 -1.483082 -1.517142
## Streptococcus_australis -1.431820 -1.483082 -1.517142
## Streptococcus_cristatus -1.431820 -1.483082 -1.517142
## Streptococcus_gordonii -1.431820 -1.483082 -1.517142
## Streptococcus_infantis -1.431820 -1.483082 -1.517142
## Streptococcus_milleri -1.431820 -1.483082 -1.517142
## Streptococcus_mitis -1.431820 -1.483082 -1.517142
## Streptococcus_oralis -1.431820 -1.483082 -1.517142
## Streptococcus_parasanguinis -1.431820 -1.483082 -1.517142
## Streptococcus_peroris -1.431820 -1.483082 -1.517142
## Streptococcus_pneumoniae -1.431820 -1.483082 -1.517142
## Streptococcus_pseudopneumoniae -1.431820 -1.483082 -1.517142
## Streptococcus_salivarius -1.431820 -1.483082 -1.517142
## Streptococcus_sanguinis -1.431820 -1.483082 -1.517142
## Streptococcus_sp_A12 -1.431820 -1.483082 -1.517142
## Streptococcus_sp_F0442 -1.431820 -1.483082 -1.517142
## Streptococcus_sp_HMSC034E03 -1.431820 -1.483082 -1.517142
## Streptococcus_sp_HMSC067H01 -1.431820 -1.483082 -1.517142
## Streptococcus_sp_HMSC071D03 -1.431820 -1.483082 -1.517142
## Streptococcus_sp_HPH0090 -1.431820 -1.483082 -1.517142
## Streptococcus_sp_M334 -1.431820 -1.483082 -1.517142
## Streptococcus_vestibularis -1.431820 -1.483082 -1.517142
## Eubacterium_brachy -1.431820 -1.483082 -1.517142
## Eubacterium_infirmum -1.431820 -1.483082 -1.517142
## Eubacterium_nodatum -1.431820 -1.483082 -1.517142
## Eubacterium_sulci -1.431820 -1.483082 -1.517142
## Mogibacterium_diversum -1.431820 -1.483082 -1.517142
## Mogibacterium_pumilum -1.431820 -1.483082 -1.517142
## Mogibacterium_timidum -1.431820 -1.483082 -1.517142
## Lachnoanaerobaculum_saburreum -1.431820 -1.483082 -1.517142
## Oribacterium_parvum -1.431820 -1.483082 -1.517142
## Oribacterium_sinus -1.431820 -1.483082 -1.517142
## Oribacterium_sp_oral_taxon_078 -1.431820 -1.483082 -1.517142
## Stomatobaculum_longum -1.431820 -1.483082 -1.517142
## Peptostreptococcus_stomatis -1.431820 -1.483082 -1.517142
## Bulleidia_extructa -1.431820 -1.483082 -1.517142
## Solobacterium_moorei -1.431820 -1.483082 -1.517142
## Limnochorda_pilosa -1.431820 -1.483082 -1.517142
## Veillonella_atypica -1.431820 -1.483082 -1.517142
## Veillonella_dispar -1.431820 -1.483082 -1.517142
## Veillonella_infantium -1.431820 -1.483082 -1.517142
## Veillonella_parvula -1.431820 -1.483082 -1.517142
## Veillonella_sp_T11011_6 -1.431820 -1.483082 -1.517142
## Anaerococcus_nagyae -1.431820 -1.483082 -1.517142
## Finegoldia_magna -1.431820 -1.483082 -1.517142
## Parvimonas_micra -1.431820 -1.483082 -1.517142
## Parvimonas_sp_oral_taxon_110 -1.431820 -1.483082 -1.517142
## Parvimonas_sp_oral_taxon_393 -1.431820 -1.483082 -1.517142
## Fusobacterium_nucleatum -1.431820 -1.483082 -1.517142
## Leptotrichia_wadei -1.431820 -1.483082 -1.517142
## Gemmata_obscuriglobus -1.431820 -1.483082 -1.517142
## Paludisphaera_borealis -1.431820 -1.483082 -1.517142
## Achromobacter_xylosoxidans -1.431820 -1.483082 -1.517142
## Cupriavidus_sp -1.431820 -1.483082 -1.517142
## Sutterella_parvirubra -1.431820 -1.483082 -1.517142
## Anaerobiospirillum_thomasii -1.431820 -1.483082 -1.517142
## Cardiobacterium_hominis -1.431820 -1.483082 -1.517142
## Cardiobacterium_valvarum -1.431820 -1.483082 -1.517142
## Alkalilimnicola_ehrlichii -1.431820 -1.483082 -1.517142
## Escherichia_coli -1.431820 9.401941 9.527618
## Thiohalorhabdus_denitrificans -1.431820 -1.483082 -1.517142
## Pseudomonas_aeruginosa -1.431820 7.044853 7.698484
## Acholeplasma_oculi 6.030395 4.690704 5.348749
## Candida_albicans -1.431820 -1.483082 -1.517142
## Candida_dubliniensis -1.431820 -1.483082 -1.517142
## Candida_parapsilosis -1.431820 -1.483082 -1.517142
## Malassezia_restricta -1.431820 -1.483082 -1.517142
## Nakamurella_silvestris -1.431820 -1.483082 -1.517142
## Alloprevotella_tannerae -1.431820 -1.483082 -1.517142
## Prevotella_jejuni -1.431820 -1.483082 -1.517142
## Prevotella_pallens -1.431820 -1.483082 -1.517142
## Prevotella_salivae -1.431820 -1.483082 -1.517142
## Prevotella_sp_oral_taxon_306 -1.431820 -1.483082 -1.517142
## Prevotella_veroralis -1.431820 -1.483082 -1.517142
## Tannerella_sp_oral_taxon_808 -1.431820 -1.483082 -1.517142
## Tannerella_sp_oral_taxon_HOT_286 -1.431820 -1.483082 -1.517142
## Capnocytophaga_gingivalis -1.431820 -1.483082 -1.517142
## Bacillus_ginsengihumi 7.393299 6.630644 7.567748
## Listeria_floridensis 12.230238 11.700629 11.824249
## Agitococcus_lubricus -1.431820 -1.483082 -1.517142
## Lactobacillus_fermentum 15.480432 15.505887 15.516385
## Lactobacillus_gasseri -1.431820 -1.483082 -1.517142
## Sharpea_azabuensis -1.431820 -1.483082 -1.517142
## Streptococcus_mutans -1.431820 -1.483082 -1.517142
## Oribacterium_asaccharolyticum -1.431820 -1.483082 -1.517142
## Megasphaera_micronuciformis -1.431820 -1.483082 -1.517142
## Neisseria_flavescens -1.431820 -1.483082 -1.517142
## Neisseria_subflava -1.431820 -1.483082 -1.517142
## Stenotrophomonas_maltophilia -1.431820 -1.483082 -1.517142
## Stenotrophomonas_pavanii -1.431820 -1.483082 -1.517142
## Stenotrophomonas_rhizophila -1.431820 -1.483082 -1.517142
## Bacillus_intestinalis 14.377265 14.389844 14.492428
## Listeria_innocua 7.804967 6.480726 7.545278
## Listeria_monocytogenes 16.016484 15.505626 15.550709
## Staphylococcus_haemolyticus -1.431820 -1.483082 -1.517142
## Streptococcus_sobrinus -1.431820 -1.483082 -1.517142
## Eggerthia_catenaformis -1.431820 -1.483082 -1.517142
## Leptotrichia_sp_oral_taxon_498 -1.431820 -1.483082 -1.517142
## Rickettsia_felis -1.431820 -1.483082 -1.517142
## Haemophilus_parainfluenzae -1.431820 -1.483082 -1.517142
## Candida_orthopsilosis -1.431820 -1.483082 -1.517142
## Nannocystis_exedens -1.431820 -1.483082 -1.517142
## Campylobacter_concisus -1.431820 -1.483082 -1.517142
## Franconibacter_helveticus -1.431820 -1.483082 -1.517142
## Klebsiella_pneumoniae -1.431820 -1.483082 -1.517142
## Salmonella_enterica -1.431820 9.318206 9.078392
## Superficieibacter_electus -1.431820 -1.483082 -1.517142
## Pseudomonas_fluorescens -1.431820 -1.483082 -1.517142
## Saccharomyces_cerevisiae 13.300172 13.344726 13.546798
## S._cerevisiae x S._kudriavzevii 9.711302 9.469180 9.894437
## Saccharomyces_kudriavzevii 9.037975 9.103225 9.255922
## Cryptococcus_gattii_VGI 11.480427 11.762732 11.903184
## Cryptococcus_gattii_VGII 12.394468 12.376379 12.699953
## Cryptococcus_gattii_VGIII 12.676981 12.350233 12.714812
## Cryptococcus_neoformans 13.332434 13.595042 13.727691
## Listeria_marthii 5.226191 -1.483082 -1.517142
## Erwinia_persicina -1.431820 -1.483082 -1.517142
## Pseudomonas_formosensis -1.431820 -1.483082 -1.517142
## Pseudomonas_putida -1.431820 -1.483082 -1.517142
## qiaamp_pos_3 qiaamp_pos_2
## Actinobaculum_sp_oral_taxon_183 -1.573742 -1.497481
## Actinomyces_georgiae -1.573742 -1.497481
## Actinomyces_graevenitzii -1.573742 -1.497481
## Actinomyces_hongkongensis -1.573742 -1.497481
## Actinomyces_johnsonii -1.573742 -1.497481
## Actinomyces_massiliensis -1.573742 -1.497481
## Actinomyces_meyeri -1.573742 -1.497481
## Actinomyces_naeslundii -1.573742 -1.497481
## Actinomyces_odontolyticus -1.573742 -1.497481
## Actinomyces_oris -1.573742 -1.497481
## Actinomyces_sp_HMSC035G02 -1.573742 -1.497481
## Actinomyces_sp_HPA0247 -1.573742 -1.497481
## Actinomyces_sp_ICM47 -1.573742 -1.497481
## Actinomyces_sp_S6_Spd3 -1.573742 -1.497481
## Actinomyces_sp_oral_taxon_170 -1.573742 -1.497481
## Actinomyces_sp_oral_taxon_180 -1.573742 -1.497481
## Actinomyces_sp_oral_taxon_181 -1.573742 -1.497481
## Actinomyces_sp_oral_taxon_414 -1.573742 -1.497481
## Actinomyces_sp_oral_taxon_448 -1.573742 -1.497481
## Actinomyces_sp_oral_taxon_897 -1.573742 -1.497481
## Actinomyces_viscosus -1.573742 -1.497481
## Aeriscardovia_aeriphila -1.573742 -1.497481
## Alloscardovia_omnicolens -1.573742 -1.497481
## Bifidobacterium_dentium -1.573742 -1.497481
## Bifidobacterium_longum -1.573742 -1.497481
## Scardovia_wiggsiae -1.573742 -1.497481
## Corynebacterium_accolens -1.573742 -1.497481
## Corynebacterium_atypicum -1.573742 -1.497481
## Corynebacterium_durum -1.573742 -1.497481
## Corynebacterium_matruchotii -1.573742 -1.497481
## Corynebacterium_pseudodiphtheriticum -1.573742 -1.497481
## Corynebacterium_pseudogenitalium -1.573742 -1.497481
## Corynebacterium_tuberculostearicum -1.573742 -1.497481
## Rothia_aeria -1.573742 -1.497481
## Rothia_dentocariosa -1.573742 -1.497481
## Rothia_mucilaginosa -1.573742 -1.497481
## Cutibacterium_acnes -1.573742 -1.497481
## Cutibacterium_granulosum -1.573742 -1.497481
## Propionibacterium_humerusii -1.573742 -1.497481
## Propionibacterium_namnetense -1.573742 -1.497481
## Propionibacterium_acidifaciens -1.573742 -1.497481
## Pseudopropionibacterium_propionicum -1.573742 -1.497481
## Atopobium_deltae -1.573742 -1.497481
## Atopobium_parvulum -1.573742 -1.497481
## Atopobium_rimae -1.573742 -1.497481
## Olsenella_profusa -1.573742 -1.497481
## Olsenella_scatoligenes -1.573742 -1.497481
## Olsenella_uli -1.573742 -1.497481
## Collinsella_aerofaciens -1.573742 -1.497481
## Collinsella_intestinalis -1.573742 -1.497481
## Collinsella_stercoris -1.573742 -1.497481
## Enorma_massiliensis -1.573742 -1.497481
## [Collinsella]_massiliensis -1.573742 -1.497481
## Asaccharobacter_celatus -1.573742 -1.497481
## Denitrobacterium_detoxificans -1.573742 -1.497481
## Enterorhabdus_caecimuris -1.573742 -1.497481
## Slackia_exigua -1.573742 -1.497481
## Slackia_isoflavoniconvertens -1.573742 -1.497481
## Rubrobacter_radiotolerans -1.573742 -1.497481
## Thermoleophilum_album -1.573742 -1.497481
## Porphyromonas_endodontalis -1.573742 -1.497481
## Porphyromonas_somerae -1.573742 -1.497481
## Prevotella_histicola -1.573742 -1.497481
## Prevotella_melaninogenica -1.573742 -1.497481
## Prevotella_oris -1.573742 -1.497481
## Kouleothrix_aurantiaca -1.573742 -1.497481
## Hydrogenibacillus_schlegelii -1.573742 -1.497481
## Gemella_asaccharolytica -1.573742 -1.497481
## Gemella_bergeri -1.573742 -1.497481
## Gemella_haemolysans 11.217358 11.016650
## Gemella_morbillorum -1.573742 -1.497481
## Gemella_sanguinis 9.516460 9.053738
## Brochothrix_campestris 7.648428 7.363019
## Staphylococcus_argenteus 13.377341 13.281308
## Staphylococcus_aureus 16.078944 15.924690
## Staphylococcus_epidermidis 5.697266 5.861350
## Staphylococcus_schweitzeri 11.256476 11.018757
## Abiotrophia_defectiva -1.573742 -1.497481
## Abiotrophia_sp_HMSC24B09 -1.573742 -1.497481
## Dolosigranulum_pigrum -1.573742 -1.497481
## Granulicatella_adiacens -1.573742 -1.497481
## Granulicatella_elegans -1.573742 -1.497481
## Enterococcus_faecalis 9.099969 8.043745
## Lactobacillus_rhamnosus -1.573742 -1.497481
## Streptococcus_anginosus -1.573742 -1.497481
## Streptococcus_australis -1.573742 -1.497481
## Streptococcus_cristatus -1.573742 -1.497481
## Streptococcus_gordonii -1.573742 -1.497481
## Streptococcus_infantis -1.573742 -1.497481
## Streptococcus_milleri -1.573742 -1.497481
## Streptococcus_mitis -1.573742 -1.497481
## Streptococcus_oralis -1.573742 -1.497481
## Streptococcus_parasanguinis -1.573742 -1.497481
## Streptococcus_peroris -1.573742 -1.497481
## Streptococcus_pneumoniae -1.573742 -1.497481
## Streptococcus_pseudopneumoniae -1.573742 -1.497481
## Streptococcus_salivarius -1.573742 -1.497481
## Streptococcus_sanguinis -1.573742 -1.497481
## Streptococcus_sp_A12 -1.573742 -1.497481
## Streptococcus_sp_F0442 -1.573742 -1.497481
## Streptococcus_sp_HMSC034E03 -1.573742 -1.497481
## Streptococcus_sp_HMSC067H01 -1.573742 -1.497481
## Streptococcus_sp_HMSC071D03 -1.573742 -1.497481
## Streptococcus_sp_HPH0090 -1.573742 -1.497481
## Streptococcus_sp_M334 -1.573742 -1.497481
## Streptococcus_vestibularis -1.573742 -1.497481
## Eubacterium_brachy -1.573742 -1.497481
## Eubacterium_infirmum -1.573742 -1.497481
## Eubacterium_nodatum -1.573742 -1.497481
## Eubacterium_sulci -1.573742 -1.497481
## Mogibacterium_diversum -1.573742 -1.497481
## Mogibacterium_pumilum -1.573742 -1.497481
## Mogibacterium_timidum -1.573742 -1.497481
## Lachnoanaerobaculum_saburreum -1.573742 -1.497481
## Oribacterium_parvum -1.573742 -1.497481
## Oribacterium_sinus -1.573742 -1.497481
## Oribacterium_sp_oral_taxon_078 -1.573742 -1.497481
## Stomatobaculum_longum -1.573742 -1.497481
## Peptostreptococcus_stomatis -1.573742 -1.497481
## Bulleidia_extructa -1.573742 -1.497481
## Solobacterium_moorei -1.573742 -1.497481
## Limnochorda_pilosa -1.573742 -1.497481
## Veillonella_atypica -1.573742 -1.497481
## Veillonella_dispar -1.573742 -1.497481
## Veillonella_infantium -1.573742 -1.497481
## Veillonella_parvula -1.573742 -1.497481
## Veillonella_sp_T11011_6 -1.573742 -1.497481
## Anaerococcus_nagyae -1.573742 -1.497481
## Finegoldia_magna -1.573742 -1.497481
## Parvimonas_micra -1.573742 -1.497481
## Parvimonas_sp_oral_taxon_110 -1.573742 -1.497481
## Parvimonas_sp_oral_taxon_393 -1.573742 -1.497481
## Fusobacterium_nucleatum -1.573742 -1.497481
## Leptotrichia_wadei -1.573742 -1.497481
## Gemmata_obscuriglobus -1.573742 -1.497481
## Paludisphaera_borealis -1.573742 -1.497481
## Achromobacter_xylosoxidans -1.573742 -1.497481
## Cupriavidus_sp -1.573742 -1.497481
## Sutterella_parvirubra -1.573742 -1.497481
## Anaerobiospirillum_thomasii 4.503900 -1.497481
## Cardiobacterium_hominis -1.573742 -1.497481
## Cardiobacterium_valvarum -1.573742 -1.497481
## Alkalilimnicola_ehrlichii -1.573742 -1.497481
## Escherichia_coli 10.145270 9.189566
## Thiohalorhabdus_denitrificans -1.573742 -1.497481
## Pseudomonas_aeruginosa 8.202537 7.663775
## Acholeplasma_oculi 5.486734 5.501942
## Candida_albicans -1.573742 -1.497481
## Candida_dubliniensis -1.573742 -1.497481
## Candida_parapsilosis -1.573742 -1.497481
## Malassezia_restricta -1.573742 -1.497481
## Nakamurella_silvestris -1.573742 -1.497481
## Alloprevotella_tannerae -1.573742 -1.497481
## Prevotella_jejuni -1.573742 -1.497481
## Prevotella_pallens -1.573742 -1.497481
## Prevotella_salivae -1.573742 -1.497481
## Prevotella_sp_oral_taxon_306 -1.573742 -1.497481
## Prevotella_veroralis -1.573742 -1.497481
## Tannerella_sp_oral_taxon_808 -1.573742 -1.497481
## Tannerella_sp_oral_taxon_HOT_286 -1.573742 -1.497481
## Capnocytophaga_gingivalis -1.573742 -1.497481
## Bacillus_ginsengihumi 7.441070 6.872372
## Listeria_floridensis 11.881022 11.694827
## Agitococcus_lubricus -1.573742 -1.497481
## Lactobacillus_fermentum 15.341200 15.217336
## Lactobacillus_gasseri -1.573742 -1.497481
## Sharpea_azabuensis -1.573742 -1.497481
## Streptococcus_mutans -1.573742 -1.497481
## Oribacterium_asaccharolyticum -1.573742 -1.497481
## Megasphaera_micronuciformis -1.573742 -1.497481
## Neisseria_flavescens -1.573742 -1.497481
## Neisseria_subflava -1.573742 -1.497481
## Stenotrophomonas_maltophilia -1.573742 -1.497481
## Stenotrophomonas_pavanii -1.573742 -1.497481
## Stenotrophomonas_rhizophila -1.573742 -1.497481
## Bacillus_intestinalis 14.659344 14.420585
## Listeria_innocua 6.390066 6.466327
## Listeria_monocytogenes 15.635967 15.471660
## Staphylococcus_haemolyticus -1.573742 -1.497481
## Streptococcus_sobrinus -1.573742 -1.497481
## Eggerthia_catenaformis -1.573742 -1.497481
## Leptotrichia_sp_oral_taxon_498 -1.573742 -1.497481
## Rickettsia_felis -1.573742 -1.497481
## Haemophilus_parainfluenzae -1.573742 -1.497481
## Candida_orthopsilosis -1.573742 -1.497481
## Nannocystis_exedens -1.573742 -1.497481
## Campylobacter_concisus -1.573742 -1.497481
## Franconibacter_helveticus -1.573742 -1.497481
## Klebsiella_pneumoniae -1.573742 -1.497481
## Salmonella_enterica 9.986887 9.236566
## Superficieibacter_electus -1.573742 -1.497481
## Pseudomonas_fluorescens -1.573742 -1.497481
## Saccharomyces_cerevisiae 13.798851 13.530077
## S._cerevisiae x S._kudriavzevii 10.161142 9.820366
## Saccharomyces_kudriavzevii 9.430123 9.153784
## Cryptococcus_gattii_VGI 12.208034 11.838881
## Cryptococcus_gattii_VGII 12.826793 12.794840
## Cryptococcus_gattii_VGIII 12.714152 12.444048
## Cryptococcus_neoformans 13.847053 13.671333
## Listeria_marthii -1.573742 -1.497481
## Erwinia_persicina -1.573742 -1.497481
## Pseudomonas_formosensis -1.573742 -1.497481
## Pseudomonas_putida -1.573742 -1.497481
## POS_EXT_20230119_3 qiaamp_pos_1
## Actinobaculum_sp_oral_taxon_183 -2.111579 -1.487795
## Actinomyces_georgiae -2.111579 -1.487795
## Actinomyces_graevenitzii -2.111579 -1.487795
## Actinomyces_hongkongensis -2.111579 -1.487795
## Actinomyces_johnsonii -2.111579 -1.487795
## Actinomyces_massiliensis -2.111579 -1.487795
## Actinomyces_meyeri -2.111579 -1.487795
## Actinomyces_naeslundii -2.111579 -1.487795
## Actinomyces_odontolyticus -2.111579 -1.487795
## Actinomyces_oris -2.111579 -1.487795
## Actinomyces_sp_HMSC035G02 -2.111579 -1.487795
## Actinomyces_sp_HPA0247 -2.111579 -1.487795
## Actinomyces_sp_ICM47 -2.111579 -1.487795
## Actinomyces_sp_S6_Spd3 -2.111579 -1.487795
## Actinomyces_sp_oral_taxon_170 -2.111579 -1.487795
## Actinomyces_sp_oral_taxon_180 -2.111579 -1.487795
## Actinomyces_sp_oral_taxon_181 -2.111579 -1.487795
## Actinomyces_sp_oral_taxon_414 -2.111579 -1.487795
## Actinomyces_sp_oral_taxon_448 -2.111579 -1.487795
## Actinomyces_sp_oral_taxon_897 -2.111579 -1.487795
## Actinomyces_viscosus -2.111579 -1.487795
## Aeriscardovia_aeriphila -2.111579 -1.487795
## Alloscardovia_omnicolens -2.111579 -1.487795
## Bifidobacterium_dentium -2.111579 -1.487795
## Bifidobacterium_longum -2.111579 -1.487795
## Scardovia_wiggsiae -2.111579 -1.487795
## Corynebacterium_accolens -2.111579 -1.487795
## Corynebacterium_atypicum -2.111579 -1.487795
## Corynebacterium_durum -2.111579 -1.487795
## Corynebacterium_matruchotii -2.111579 -1.487795
## Corynebacterium_pseudodiphtheriticum -2.111579 -1.487795
## Corynebacterium_pseudogenitalium -2.111579 -1.487795
## Corynebacterium_tuberculostearicum -2.111579 -1.487795
## Rothia_aeria -2.111579 -1.487795
## Rothia_dentocariosa -2.111579 -1.487795
## Rothia_mucilaginosa -2.111579 -1.487795
## Cutibacterium_acnes -2.111579 -1.487795
## Cutibacterium_granulosum -2.111579 -1.487795
## Propionibacterium_humerusii -2.111579 -1.487795
## Propionibacterium_namnetense -2.111579 -1.487795
## Propionibacterium_acidifaciens -2.111579 -1.487795
## Pseudopropionibacterium_propionicum -2.111579 -1.487795
## Atopobium_deltae -2.111579 -1.487795
## Atopobium_parvulum -2.111579 -1.487795
## Atopobium_rimae -2.111579 -1.487795
## Olsenella_profusa -2.111579 -1.487795
## Olsenella_scatoligenes -2.111579 -1.487795
## Olsenella_uli -2.111579 -1.487795
## Collinsella_aerofaciens -2.111579 -1.487795
## Collinsella_intestinalis -2.111579 -1.487795
## Collinsella_stercoris -2.111579 -1.487795
## Enorma_massiliensis -2.111579 -1.487795
## [Collinsella]_massiliensis 1.672610 -1.487795
## Asaccharobacter_celatus -2.111579 -1.487795
## Denitrobacterium_detoxificans -2.111579 -1.487795
## Enterorhabdus_caecimuris -2.111579 -1.487795
## Slackia_exigua -2.111579 -1.487795
## Slackia_isoflavoniconvertens -2.111579 -1.487795
## Rubrobacter_radiotolerans -2.111579 -1.487795
## Thermoleophilum_album 5.124040 -1.487795
## Porphyromonas_endodontalis -2.111579 -1.487795
## Porphyromonas_somerae -2.111579 -1.487795
## Prevotella_histicola -2.111579 -1.487795
## Prevotella_melaninogenica -2.111579 -1.487795
## Prevotella_oris -2.111579 -1.487795
## Kouleothrix_aurantiaca -2.111579 -1.487795
## Hydrogenibacillus_schlegelii 5.903418 -1.487795
## Gemella_asaccharolytica -2.111579 -1.487795
## Gemella_bergeri -2.111579 -1.487795
## Gemella_haemolysans 8.931695 10.907665
## Gemella_morbillorum -2.111579 -1.487795
## Gemella_sanguinis 7.612183 8.984381
## Brochothrix_campestris 5.471159 7.247891
## Staphylococcus_argenteus 10.267400 13.126182
## Staphylococcus_aureus 13.013266 15.877808
## Staphylococcus_epidermidis -2.111579 5.836035
## Staphylococcus_schweitzeri 8.265997 10.973675
## Abiotrophia_defectiva -2.111579 -1.487795
## Abiotrophia_sp_HMSC24B09 -2.111579 -1.487795
## Dolosigranulum_pigrum -2.111579 -1.487795
## Granulicatella_adiacens -2.111579 -1.487795
## Granulicatella_elegans 2.192486 -1.487795
## Enterococcus_faecalis 12.979182 8.482042
## Lactobacillus_rhamnosus -2.111579 -1.487795
## Streptococcus_anginosus -2.111579 -1.487795
## Streptococcus_australis -2.111579 -1.487795
## Streptococcus_cristatus -2.111579 -1.487795
## Streptococcus_gordonii -2.111579 -1.487795
## Streptococcus_infantis -2.111579 -1.487795
## Streptococcus_milleri -2.111579 -1.487795
## Streptococcus_mitis -2.111579 -1.487795
## Streptococcus_oralis -2.111579 -1.487795
## Streptococcus_parasanguinis -2.111579 -1.487795
## Streptococcus_peroris -2.111579 -1.487795
## Streptococcus_pneumoniae -2.111579 -1.487795
## Streptococcus_pseudopneumoniae -2.111579 -1.487795
## Streptococcus_salivarius -2.111579 -1.487795
## Streptococcus_sanguinis -2.111579 -1.487795
## Streptococcus_sp_A12 -2.111579 -1.487795
## Streptococcus_sp_F0442 -2.111579 -1.487795
## Streptococcus_sp_HMSC034E03 -2.111579 -1.487795
## Streptococcus_sp_HMSC067H01 -2.111579 -1.487795
## Streptococcus_sp_HMSC071D03 -2.111579 -1.487795
## Streptococcus_sp_HPH0090 -2.111579 -1.487795
## Streptococcus_sp_M334 -2.111579 -1.487795
## Streptococcus_vestibularis -2.111579 -1.487795
## Eubacterium_brachy -2.111579 -1.487795
## Eubacterium_infirmum -2.111579 -1.487795
## Eubacterium_nodatum -2.111579 -1.487795
## Eubacterium_sulci -2.111579 -1.487795
## Mogibacterium_diversum -2.111579 -1.487795
## Mogibacterium_pumilum -2.111579 -1.487795
## Mogibacterium_timidum -2.111579 -1.487795
## Lachnoanaerobaculum_saburreum -2.111579 -1.487795
## Oribacterium_parvum -2.111579 -1.487795
## Oribacterium_sinus -2.111579 -1.487795
## Oribacterium_sp_oral_taxon_078 -2.111579 -1.487795
## Stomatobaculum_longum -2.111579 -1.487795
## Peptostreptococcus_stomatis -2.111579 -1.487795
## Bulleidia_extructa -2.111579 -1.487795
## Solobacterium_moorei -2.111579 -1.487795
## Limnochorda_pilosa 4.496421 -1.487795
## Veillonella_atypica -2.111579 -1.487795
## Veillonella_dispar -2.111579 -1.487795
## Veillonella_infantium -2.111579 -1.487795
## Veillonella_parvula -2.111579 -1.487795
## Veillonella_sp_T11011_6 -2.111579 -1.487795
## Anaerococcus_nagyae -2.111579 -1.487795
## Finegoldia_magna -2.111579 -1.487795
## Parvimonas_micra -2.111579 -1.487795
## Parvimonas_sp_oral_taxon_110 -2.111579 -1.487795
## Parvimonas_sp_oral_taxon_393 -2.111579 -1.487795
## Fusobacterium_nucleatum -2.111579 -1.487795
## Leptotrichia_wadei -2.111579 -1.487795
## Gemmata_obscuriglobus -2.111579 -1.487795
## Paludisphaera_borealis 5.446938 -1.487795
## Achromobacter_xylosoxidans -2.111579 -1.487795
## Cupriavidus_sp -2.111579 -1.487795
## Sutterella_parvirubra 6.794272 -1.487795
## Anaerobiospirillum_thomasii -2.111579 -1.487795
## Cardiobacterium_hominis -2.111579 -1.487795
## Cardiobacterium_valvarum -2.111579 -1.487795
## Alkalilimnicola_ehrlichii 8.401185 -1.487795
## Escherichia_coli 14.926552 9.980028
## Thiohalorhabdus_denitrificans 7.786393 -1.487795
## Pseudomonas_aeruginosa 13.542737 6.988576
## Acholeplasma_oculi 2.748233 5.223945
## Candida_albicans -2.111579 -1.487795
## Candida_dubliniensis -2.111579 -1.487795
## Candida_parapsilosis -2.111579 -1.487795
## Malassezia_restricta -2.111579 -1.487795
## Nakamurella_silvestris -2.111579 -1.487795
## Alloprevotella_tannerae -2.111579 -1.487795
## Prevotella_jejuni -2.111579 -1.487795
## Prevotella_pallens -2.111579 -1.487795
## Prevotella_salivae -2.111579 -1.487795
## Prevotella_sp_oral_taxon_306 -2.111579 -1.487795
## Prevotella_veroralis -2.111579 -1.487795
## Tannerella_sp_oral_taxon_808 -2.111579 -1.487795
## Tannerella_sp_oral_taxon_HOT_286 -2.111579 -1.487795
## Capnocytophaga_gingivalis -2.111579 -1.487795
## Bacillus_ginsengihumi 4.901437 6.487769
## Listeria_floridensis 9.635422 11.726270
## Agitococcus_lubricus 5.706449 -1.487795
## Lactobacillus_fermentum 12.902328 14.929311
## Lactobacillus_gasseri -2.111579 -1.487795
## Sharpea_azabuensis -2.111579 -1.487795
## Streptococcus_mutans -2.111579 -1.487795
## Oribacterium_asaccharolyticum -2.111579 -1.487795
## Megasphaera_micronuciformis -2.111579 -1.487795
## Neisseria_flavescens -2.111579 -1.487795
## Neisseria_subflava -2.111579 -1.487795
## Stenotrophomonas_maltophilia -2.111579 -1.487795
## Stenotrophomonas_pavanii -2.111579 -1.487795
## Stenotrophomonas_rhizophila -2.111579 -1.487795
## Bacillus_intestinalis 14.197371 14.363401
## Listeria_innocua 3.907014 5.916484
## Listeria_monocytogenes 13.346434 15.501324
## Staphylococcus_haemolyticus -2.111579 -1.487795
## Streptococcus_sobrinus -2.111579 -1.487795
## Eggerthia_catenaformis -2.111579 -1.487795
## Leptotrichia_sp_oral_taxon_498 -2.111579 -1.487795
## Rickettsia_felis -2.111579 -1.487795
## Haemophilus_parainfluenzae -2.111579 -1.487795
## Candida_orthopsilosis -2.111579 -1.487795
## Nannocystis_exedens 4.600161 -1.487795
## Campylobacter_concisus -2.111579 -1.487795
## Franconibacter_helveticus 7.064377 -1.487795
## Klebsiella_pneumoniae 8.667835 -1.487795
## Salmonella_enterica 14.709913 9.617763
## Superficieibacter_electus 6.669976 -1.487795
## Pseudomonas_fluorescens 5.998548 -1.487795
## Saccharomyces_cerevisiae 11.579605 13.462812
## S._cerevisiae x S._kudriavzevii 7.418160 9.706329
## Saccharomyces_kudriavzevii 6.929040 9.055992
## Cryptococcus_gattii_VGI 9.418321 11.814572
## Cryptococcus_gattii_VGII 10.296156 12.542405
## Cryptococcus_gattii_VGIII 10.558633 12.524434
## Cryptococcus_neoformans 11.102886 13.550494
## Listeria_marthii 4.526989 -1.487795
## Erwinia_persicina 5.171182 -1.487795
## Pseudomonas_formosensis -2.111579 -1.487795
## Pseudomonas_putida 5.079850 -1.487795
## POS_EXT_20230119_2 POS_EXT_20230119_1
## Actinobaculum_sp_oral_taxon_183 -2.055359 -2.115943
## Actinomyces_georgiae -2.055359 -2.115943
## Actinomyces_graevenitzii -2.055359 -2.115943
## Actinomyces_hongkongensis -2.055359 -2.115943
## Actinomyces_johnsonii -2.055359 -2.115943
## Actinomyces_massiliensis -2.055359 -2.115943
## Actinomyces_meyeri -2.055359 -2.115943
## Actinomyces_naeslundii -2.055359 -2.115943
## Actinomyces_odontolyticus -2.055359 -2.115943
## Actinomyces_oris -2.055359 -2.115943
## Actinomyces_sp_HMSC035G02 -2.055359 -2.115943
## Actinomyces_sp_HPA0247 -2.055359 -2.115943
## Actinomyces_sp_ICM47 -2.055359 -2.115943
## Actinomyces_sp_S6_Spd3 -2.055359 -2.115943
## Actinomyces_sp_oral_taxon_170 -2.055359 -2.115943
## Actinomyces_sp_oral_taxon_180 -2.055359 -2.115943
## Actinomyces_sp_oral_taxon_181 -2.055359 -2.115943
## Actinomyces_sp_oral_taxon_414 -2.055359 -2.115943
## Actinomyces_sp_oral_taxon_448 -2.055359 -2.115943
## Actinomyces_sp_oral_taxon_897 -2.055359 -2.115943
## Actinomyces_viscosus -2.055359 -2.115943
## Aeriscardovia_aeriphila -2.055359 -2.115943
## Alloscardovia_omnicolens -2.055359 -2.115943
## Bifidobacterium_dentium -2.055359 -2.115943
## Bifidobacterium_longum -2.055359 -2.115943
## Scardovia_wiggsiae -2.055359 -2.115943
## Corynebacterium_accolens -2.055359 -2.115943
## Corynebacterium_atypicum -2.055359 -2.115943
## Corynebacterium_durum -2.055359 -2.115943
## Corynebacterium_matruchotii -2.055359 -2.115943
## Corynebacterium_pseudodiphtheriticum -2.055359 -2.115943
## Corynebacterium_pseudogenitalium -2.055359 -2.115943
## Corynebacterium_tuberculostearicum -2.055359 -2.115943
## Rothia_aeria -2.055359 -2.115943
## Rothia_dentocariosa -2.055359 -2.115943
## Rothia_mucilaginosa -2.055359 -2.115943
## Cutibacterium_acnes -2.055359 -2.115943
## Cutibacterium_granulosum -2.055359 -2.115943
## Propionibacterium_humerusii -2.055359 -2.115943
## Propionibacterium_namnetense -2.055359 -2.115943
## Propionibacterium_acidifaciens -2.055359 -2.115943
## Pseudopropionibacterium_propionicum -2.055359 -2.115943
## Atopobium_deltae -2.055359 -2.115943
## Atopobium_parvulum -2.055359 -2.115943
## Atopobium_rimae -2.055359 -2.115943
## Olsenella_profusa -2.055359 -2.115943
## Olsenella_scatoligenes -2.055359 -2.115943
## Olsenella_uli -2.055359 -2.115943
## Collinsella_aerofaciens -2.055359 -2.115943
## Collinsella_intestinalis -2.055359 -2.115943
## Collinsella_stercoris -2.055359 -2.115943
## Enorma_massiliensis -2.055359 -2.115943
## [Collinsella]_massiliensis -2.055359 -2.115943
## Asaccharobacter_celatus -2.055359 -2.115943
## Denitrobacterium_detoxificans -2.055359 -2.115943
## Enterorhabdus_caecimuris -2.055359 -2.115943
## Slackia_exigua -2.055359 -2.115943
## Slackia_isoflavoniconvertens -2.055359 -2.115943
## Rubrobacter_radiotolerans -2.055359 -2.115943
## Thermoleophilum_album 5.380669 4.868773
## Porphyromonas_endodontalis -2.055359 -2.115943
## Porphyromonas_somerae -2.055359 -2.115943
## Prevotella_histicola -2.055359 -2.115943
## Prevotella_melaninogenica -2.055359 -2.115943
## Prevotella_oris -2.055359 -2.115943
## Kouleothrix_aurantiaca -2.055359 3.664800
## Hydrogenibacillus_schlegelii 5.382436 6.285839
## Gemella_asaccharolytica -2.055359 -2.115943
## Gemella_bergeri -2.055359 -2.115943
## Gemella_haemolysans 8.926096 8.899106
## Gemella_morbillorum -2.055359 -2.115943
## Gemella_sanguinis 7.552818 7.560769
## Brochothrix_campestris 5.672176 5.273003
## Staphylococcus_argenteus 10.149563 9.971199
## Staphylococcus_aureus 12.855979 12.804094
## Staphylococcus_epidermidis -2.055359 -2.115943
## Staphylococcus_schweitzeri 7.783217 7.615034
## Abiotrophia_defectiva -2.055359 -2.115943
## Abiotrophia_sp_HMSC24B09 -2.055359 -2.115943
## Dolosigranulum_pigrum -2.055359 -2.115943
## Granulicatella_adiacens -2.055359 -2.115943
## Granulicatella_elegans 3.227845 2.751591
## Enterococcus_faecalis 12.932208 12.942691
## Lactobacillus_rhamnosus -2.055359 -2.115943
## Streptococcus_anginosus -2.055359 -2.115943
## Streptococcus_australis -2.055359 -2.115943
## Streptococcus_cristatus -2.055359 -2.115943
## Streptococcus_gordonii -2.055359 -2.115943
## Streptococcus_infantis -2.055359 -2.115943
## Streptococcus_milleri -2.055359 -2.115943
## Streptococcus_mitis -2.055359 -2.115943
## Streptococcus_oralis -2.055359 -2.115943
## Streptococcus_parasanguinis -2.055359 -2.115943
## Streptococcus_peroris -2.055359 -2.115943
## Streptococcus_pneumoniae -2.055359 -2.115943
## Streptococcus_pseudopneumoniae -2.055359 -2.115943
## Streptococcus_salivarius -2.055359 -2.115943
## Streptococcus_sanguinis -2.055359 -2.115943
## Streptococcus_sp_A12 -2.055359 -2.115943
## Streptococcus_sp_F0442 -2.055359 -2.115943
## Streptococcus_sp_HMSC034E03 -2.055359 -2.115943
## Streptococcus_sp_HMSC067H01 -2.055359 -2.115943
## Streptococcus_sp_HMSC071D03 -2.055359 -2.115943
## Streptococcus_sp_HPH0090 -2.055359 -2.115943
## Streptococcus_sp_M334 -2.055359 -2.115943
## Streptococcus_vestibularis -2.055359 -2.115943
## Eubacterium_brachy -2.055359 -2.115943
## Eubacterium_infirmum -2.055359 -2.115943
## Eubacterium_nodatum -2.055359 -2.115943
## Eubacterium_sulci -2.055359 -2.115943
## Mogibacterium_diversum -2.055359 -2.115943
## Mogibacterium_pumilum -2.055359 -2.115943
## Mogibacterium_timidum -2.055359 -2.115943
## Lachnoanaerobaculum_saburreum -2.055359 -2.115943
## Oribacterium_parvum -2.055359 -2.115943
## Oribacterium_sinus -2.055359 -2.115943
## Oribacterium_sp_oral_taxon_078 -2.055359 -2.115943
## Stomatobaculum_longum -2.055359 -2.115943
## Peptostreptococcus_stomatis -2.055359 -2.115943
## Bulleidia_extructa -2.055359 -2.115943
## Solobacterium_moorei -2.055359 -2.115943
## Limnochorda_pilosa 5.362822 5.263689
## Veillonella_atypica -2.055359 -2.115943
## Veillonella_dispar -2.055359 -2.115943
## Veillonella_infantium -2.055359 -2.115943
## Veillonella_parvula -2.055359 -2.115943
## Veillonella_sp_T11011_6 -2.055359 -2.115943
## Anaerococcus_nagyae -2.055359 -2.115943
## Finegoldia_magna -2.055359 -2.115943
## Parvimonas_micra -2.055359 -2.115943
## Parvimonas_sp_oral_taxon_110 -2.055359 -2.115943
## Parvimonas_sp_oral_taxon_393 -2.055359 -2.115943
## Fusobacterium_nucleatum -2.055359 -2.115943
## Leptotrichia_wadei -2.055359 -2.115943
## Gemmata_obscuriglobus 4.173152 4.112568
## Paludisphaera_borealis 4.574005 5.242250
## Achromobacter_xylosoxidans -2.055359 -2.115943
## Cupriavidus_sp -2.055359 -2.115943
## Sutterella_parvirubra 7.141694 7.102663
## Anaerobiospirillum_thomasii -2.055359 5.075486
## Cardiobacterium_hominis -2.055359 -2.115943
## Cardiobacterium_valvarum -2.055359 -2.115943
## Alkalilimnicola_ehrlichii 8.232643 8.200713
## Escherichia_coli 15.006995 15.073022
## Thiohalorhabdus_denitrificans 7.911338 7.919756
## Pseudomonas_aeruginosa 13.615621 13.527390
## Acholeplasma_oculi -2.055359 -2.115943
## Candida_albicans -2.055359 -2.115943
## Candida_dubliniensis -2.055359 -2.115943
## Candida_parapsilosis -2.055359 -2.115943
## Malassezia_restricta -2.055359 -2.115943
## Nakamurella_silvestris -2.055359 -2.115943
## Alloprevotella_tannerae -2.055359 -2.115943
## Prevotella_jejuni -2.055359 -2.115943
## Prevotella_pallens -2.055359 -2.115943
## Prevotella_salivae -2.055359 -2.115943
## Prevotella_sp_oral_taxon_306 -2.055359 -2.115943
## Prevotella_veroralis -2.055359 -2.115943
## Tannerella_sp_oral_taxon_808 -2.055359 -2.115943
## Tannerella_sp_oral_taxon_HOT_286 -2.055359 -2.115943
## Capnocytophaga_gingivalis -2.055359 -2.115943
## Bacillus_ginsengihumi 4.827079 4.878907
## Listeria_floridensis 9.728921 9.359259
## Agitococcus_lubricus 5.875567 5.414537
## Lactobacillus_fermentum 12.817289 12.878708
## Lactobacillus_gasseri -2.055359 -2.115943
## Sharpea_azabuensis -2.055359 -2.115943
## Streptococcus_mutans -2.055359 -2.115943
## Oribacterium_asaccharolyticum -2.055359 -2.115943
## Megasphaera_micronuciformis -2.055359 -2.115943
## Neisseria_flavescens -2.055359 -2.115943
## Neisseria_subflava -2.055359 -2.115943
## Stenotrophomonas_maltophilia -2.055359 -2.115943
## Stenotrophomonas_pavanii -2.055359 -2.115943
## Stenotrophomonas_rhizophila -2.055359 -2.115943
## Bacillus_intestinalis 14.255313 14.230617
## Listeria_innocua 3.963234 3.902650
## Listeria_monocytogenes 13.359646 13.040867
## Staphylococcus_haemolyticus -2.055359 -2.115943
## Streptococcus_sobrinus -2.055359 -2.115943
## Eggerthia_catenaformis -2.055359 -2.115943
## Leptotrichia_sp_oral_taxon_498 -2.055359 -2.115943
## Rickettsia_felis -2.055359 -2.115943
## Haemophilus_parainfluenzae -2.055359 -2.115943
## Candida_orthopsilosis -2.055359 -2.115943
## Nannocystis_exedens 4.773353 4.307304
## Campylobacter_concisus -2.055359 -2.115943
## Franconibacter_helveticus 7.105476 6.814683
## Klebsiella_pneumoniae 8.177504 8.663471
## Salmonella_enterica 14.759263 14.741057
## Superficieibacter_electus 6.925443 6.679790
## Pseudomonas_fluorescens 5.879513 6.320690
## Saccharomyces_cerevisiae 11.510651 11.482944
## S._cerevisiae x S._kudriavzevii 7.788485 7.334594
## Saccharomyces_kudriavzevii 7.107261 6.725649
## Cryptococcus_gattii_VGI 8.953054 9.133654
## Cryptococcus_gattii_VGII 10.123065 10.151210
## Cryptococcus_gattii_VGIII 10.369958 9.799637
## Cryptococcus_neoformans 11.140359 11.043484
## Listeria_marthii -2.055359 -2.115943
## Erwinia_persicina 4.568706 4.509449
## Pseudomonas_formosensis -2.055359 -2.115943
## Pseudomonas_putida 5.133054 5.099297
## ben_pos_5 ben_pos_4 ben_pos_3 ben_pos_2
## Actinobaculum_sp_oral_taxon_183 -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_georgiae -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_graevenitzii -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_hongkongensis -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_johnsonii -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_massiliensis -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_meyeri -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_naeslundii -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_odontolyticus -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_oris -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_sp_HMSC035G02 -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_sp_HPA0247 -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_sp_ICM47 -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_sp_S6_Spd3 -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_sp_oral_taxon_170 -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_sp_oral_taxon_180 -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_sp_oral_taxon_181 -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_sp_oral_taxon_414 -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_sp_oral_taxon_448 -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_sp_oral_taxon_897 -1.409322 -1.352536 -1.528211 -1.435303
## Actinomyces_viscosus -1.409322 -1.352536 -1.528211 -1.435303
## Aeriscardovia_aeriphila -1.409322 -1.352536 -1.528211 -1.435303
## Alloscardovia_omnicolens -1.409322 -1.352536 -1.528211 -1.435303
## Bifidobacterium_dentium -1.409322 -1.352536 -1.528211 -1.435303
## Bifidobacterium_longum -1.409322 -1.352536 -1.528211 -1.435303
## Scardovia_wiggsiae -1.409322 -1.352536 -1.528211 -1.435303
## Corynebacterium_accolens -1.409322 -1.352536 -1.528211 -1.435303
## Corynebacterium_atypicum -1.409322 -1.352536 -1.528211 -1.435303
## Corynebacterium_durum -1.409322 -1.352536 -1.528211 -1.435303
## Corynebacterium_matruchotii -1.409322 -1.352536 -1.528211 -1.435303
## Corynebacterium_pseudodiphtheriticum -1.409322 -1.352536 -1.528211 -1.435303
## Corynebacterium_pseudogenitalium -1.409322 -1.352536 -1.528211 -1.435303
## Corynebacterium_tuberculostearicum -1.409322 -1.352536 -1.528211 -1.435303
## Rothia_aeria -1.409322 -1.352536 -1.528211 -1.435303
## Rothia_dentocariosa -1.409322 -1.352536 -1.528211 -1.435303
## Rothia_mucilaginosa -1.409322 -1.352536 -1.528211 -1.435303
## Cutibacterium_acnes -1.409322 -1.352536 -1.528211 -1.435303
## Cutibacterium_granulosum -1.409322 -1.352536 -1.528211 -1.435303
## Propionibacterium_humerusii -1.409322 -1.352536 -1.528211 -1.435303
## Propionibacterium_namnetense -1.409322 -1.352536 -1.528211 -1.435303
## Propionibacterium_acidifaciens -1.409322 -1.352536 -1.528211 -1.435303
## Pseudopropionibacterium_propionicum -1.409322 -1.352536 -1.528211 -1.435303
## Atopobium_deltae -1.409322 -1.352536 -1.528211 -1.435303
## Atopobium_parvulum -1.409322 -1.352536 -1.528211 -1.435303
## Atopobium_rimae -1.409322 -1.352536 -1.528211 -1.435303
## Olsenella_profusa -1.409322 -1.352536 -1.528211 -1.435303
## Olsenella_scatoligenes -1.409322 -1.352536 -1.528211 -1.435303
## Olsenella_uli -1.409322 -1.352536 -1.528211 -1.435303
## Collinsella_aerofaciens -1.409322 -1.352536 -1.528211 -1.435303
## Collinsella_intestinalis -1.409322 -1.352536 -1.528211 -1.435303
## Collinsella_stercoris -1.409322 -1.352536 -1.528211 -1.435303
## Enorma_massiliensis -1.409322 -1.352536 -1.528211 -1.435303
## [Collinsella]_massiliensis -1.409322 -1.352536 -1.528211 -1.435303
## Asaccharobacter_celatus -1.409322 -1.352536 -1.528211 -1.435303
## Denitrobacterium_detoxificans -1.409322 -1.352536 -1.528211 -1.435303
## Enterorhabdus_caecimuris -1.409322 -1.352536 -1.528211 -1.435303
## Slackia_exigua -1.409322 -1.352536 -1.528211 -1.435303
## Slackia_isoflavoniconvertens -1.409322 -1.352536 -1.528211 -1.435303
## Rubrobacter_radiotolerans -1.409322 -1.352536 -1.528211 -1.435303
## Thermoleophilum_album -1.409322 -1.352536 -1.528211 -1.435303
## Porphyromonas_endodontalis -1.409322 -1.352536 -1.528211 -1.435303
## Porphyromonas_somerae -1.409322 -1.352536 -1.528211 -1.435303
## Prevotella_histicola -1.409322 -1.352536 -1.528211 -1.435303
## Prevotella_melaninogenica -1.409322 -1.352536 -1.528211 -1.435303
## Prevotella_oris -1.409322 -1.352536 -1.528211 -1.435303
## Kouleothrix_aurantiaca -1.409322 -1.352536 -1.528211 -1.435303
## Hydrogenibacillus_schlegelii -1.409322 -1.352536 -1.528211 -1.435303
## Gemella_asaccharolytica -1.409322 -1.352536 -1.528211 -1.435303
## Gemella_bergeri -1.409322 -1.352536 -1.528211 -1.435303
## Gemella_haemolysans 10.417633 10.338804 10.658174 10.810860
## Gemella_morbillorum -1.409322 -1.352536 -1.528211 -1.435303
## Gemella_sanguinis 9.813117 9.729715 10.036814 10.232539
## Brochothrix_campestris 7.206992 7.198866 7.485141 8.080682
## Staphylococcus_argenteus 12.515274 12.223754 12.661705 12.747806
## Staphylococcus_aureus 15.246888 15.082988 15.359549 15.541155
## Staphylococcus_epidermidis 5.121555 -1.352536 -1.528211 4.061865
## Staphylococcus_schweitzeri 10.354549 10.381123 10.451632 10.793720
## Abiotrophia_defectiva -1.409322 -1.352536 -1.528211 -1.435303
## Abiotrophia_sp_HMSC24B09 -1.409322 -1.352536 -1.528211 -1.435303
## Dolosigranulum_pigrum -1.409322 -1.352536 -1.528211 -1.435303
## Granulicatella_adiacens -1.409322 -1.352536 -1.528211 -1.435303
## Granulicatella_elegans 4.885944 5.046059 5.202807 5.600846
## Enterococcus_faecalis 14.662148 14.656964 15.235661 15.260289
## Lactobacillus_rhamnosus -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_anginosus -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_australis -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_cristatus -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_gordonii -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_infantis -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_milleri -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_mitis -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_oralis -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_parasanguinis -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_peroris -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_pneumoniae -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_pseudopneumoniae -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_salivarius -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_sanguinis -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_sp_A12 -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_sp_F0442 -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_sp_HMSC034E03 -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_sp_HMSC067H01 -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_sp_HMSC071D03 -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_sp_HPH0090 -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_sp_M334 -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_vestibularis -1.409322 -1.352536 -1.528211 -1.435303
## Eubacterium_brachy -1.409322 -1.352536 -1.528211 -1.435303
## Eubacterium_infirmum -1.409322 -1.352536 -1.528211 -1.435303
## Eubacterium_nodatum -1.409322 -1.352536 -1.528211 -1.435303
## Eubacterium_sulci -1.409322 -1.352536 -1.528211 -1.435303
## Mogibacterium_diversum -1.409322 -1.352536 -1.528211 -1.435303
## Mogibacterium_pumilum -1.409322 -1.352536 -1.528211 -1.435303
## Mogibacterium_timidum -1.409322 -1.352536 -1.528211 -1.435303
## Lachnoanaerobaculum_saburreum -1.409322 -1.352536 -1.528211 -1.435303
## Oribacterium_parvum -1.409322 -1.352536 -1.528211 -1.435303
## Oribacterium_sinus -1.409322 -1.352536 -1.528211 -1.435303
## Oribacterium_sp_oral_taxon_078 -1.409322 -1.352536 -1.528211 -1.435303
## Stomatobaculum_longum -1.409322 -1.352536 -1.528211 -1.435303
## Peptostreptococcus_stomatis -1.409322 -1.352536 -1.528211 -1.435303
## Bulleidia_extructa -1.409322 -1.352536 -1.528211 -1.435303
## Solobacterium_moorei -1.409322 -1.352536 -1.528211 -1.435303
## Limnochorda_pilosa -1.409322 -1.352536 -1.528211 -1.435303
## Veillonella_atypica -1.409322 -1.352536 -1.528211 -1.435303
## Veillonella_dispar -1.409322 -1.352536 -1.528211 -1.435303
## Veillonella_infantium -1.409322 -1.352536 -1.528211 -1.435303
## Veillonella_parvula -1.409322 -1.352536 -1.528211 -1.435303
## Veillonella_sp_T11011_6 -1.409322 -1.352536 -1.528211 -1.435303
## Anaerococcus_nagyae -1.409322 -1.352536 -1.528211 -1.435303
## Finegoldia_magna -1.409322 -1.352536 -1.528211 -1.435303
## Parvimonas_micra -1.409322 -1.352536 -1.528211 -1.435303
## Parvimonas_sp_oral_taxon_110 -1.409322 -1.352536 -1.528211 -1.435303
## Parvimonas_sp_oral_taxon_393 -1.409322 -1.352536 -1.528211 -1.435303
## Fusobacterium_nucleatum -1.409322 -1.352536 -1.528211 -1.435303
## Leptotrichia_wadei -1.409322 -1.352536 -1.528211 -1.435303
## Gemmata_obscuriglobus -1.409322 -1.352536 -1.528211 -1.435303
## Paludisphaera_borealis -1.409322 -1.352536 -1.528211 -1.435303
## Achromobacter_xylosoxidans -1.409322 -1.352536 -1.528211 -1.435303
## Cupriavidus_sp -1.409322 -1.352536 -1.528211 -1.435303
## Sutterella_parvirubra -1.409322 -1.352536 -1.528211 -1.435303
## Anaerobiospirillum_thomasii -1.409322 -1.352536 -1.528211 -1.435303
## Cardiobacterium_hominis -1.409322 -1.352536 -1.528211 -1.435303
## Cardiobacterium_valvarum -1.409322 -1.352536 -1.528211 -1.435303
## Alkalilimnicola_ehrlichii -1.409322 -1.352536 -1.528211 -1.435303
## Escherichia_coli -1.409322 -1.352536 10.713494 -1.435303
## Thiohalorhabdus_denitrificans -1.409322 -1.352536 -1.528211 -1.435303
## Pseudomonas_aeruginosa -1.409322 -1.352536 -1.528211 -1.435303
## Acholeplasma_oculi 5.097955 4.986058 4.810383 5.531664
## Candida_albicans -1.409322 -1.352536 -1.528211 -1.435303
## Candida_dubliniensis -1.409322 -1.352536 -1.528211 -1.435303
## Candida_parapsilosis -1.409322 -1.352536 -1.528211 -1.435303
## Malassezia_restricta -1.409322 -1.352536 -1.528211 -1.435303
## Nakamurella_silvestris -1.409322 -1.352536 -1.528211 -1.435303
## Alloprevotella_tannerae -1.409322 -1.352536 -1.528211 -1.435303
## Prevotella_jejuni -1.409322 -1.352536 -1.528211 -1.435303
## Prevotella_pallens -1.409322 -1.352536 -1.528211 -1.435303
## Prevotella_salivae -1.409322 -1.352536 -1.528211 -1.435303
## Prevotella_sp_oral_taxon_306 -1.409322 -1.352536 -1.528211 -1.435303
## Prevotella_veroralis -1.409322 -1.352536 -1.528211 -1.435303
## Tannerella_sp_oral_taxon_808 -1.409322 -1.352536 -1.528211 -1.435303
## Tannerella_sp_oral_taxon_HOT_286 -1.409322 -1.352536 -1.528211 -1.435303
## Capnocytophaga_gingivalis -1.409322 -1.352536 -1.528211 -1.435303
## Bacillus_ginsengihumi 6.295039 6.621309 6.723192 7.450415
## Listeria_floridensis 11.408207 11.262400 11.570483 11.824341
## Agitococcus_lubricus -1.409322 -1.352536 -1.528211 -1.435303
## Lactobacillus_fermentum 15.265973 15.041333 15.280685 15.334897
## Lactobacillus_gasseri -1.409322 -1.352536 -1.528211 -1.435303
## Sharpea_azabuensis -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_mutans -1.409322 -1.352536 -1.528211 -1.435303
## Oribacterium_asaccharolyticum -1.409322 -1.352536 -1.528211 -1.435303
## Megasphaera_micronuciformis -1.409322 -1.352536 -1.528211 -1.435303
## Neisseria_flavescens -1.409322 -1.352536 -1.528211 -1.435303
## Neisseria_subflava -1.409322 -1.352536 -1.528211 -1.435303
## Stenotrophomonas_maltophilia -1.409322 -1.352536 -1.528211 -1.435303
## Stenotrophomonas_pavanii -1.409322 -1.352536 -1.528211 -1.435303
## Stenotrophomonas_rhizophila -1.409322 -1.352536 -1.528211 -1.435303
## Bacillus_intestinalis 13.781348 13.926603 14.533718 14.233916
## Listeria_innocua 7.093569 5.764670 6.099334 7.415788
## Listeria_monocytogenes 15.073664 15.043712 15.242376 15.483353
## Staphylococcus_haemolyticus -1.409322 -1.352536 -1.528211 -1.435303
## Streptococcus_sobrinus -1.409322 -1.352536 -1.528211 -1.435303
## Eggerthia_catenaformis -1.409322 -1.352536 -1.528211 -1.435303
## Leptotrichia_sp_oral_taxon_498 -1.409322 -1.352536 -1.528211 -1.435303
## Rickettsia_felis -1.409322 -1.352536 -1.528211 -1.435303
## Haemophilus_parainfluenzae -1.409322 -1.352536 -1.528211 -1.435303
## Candida_orthopsilosis -1.409322 -1.352536 -1.528211 -1.435303
## Nannocystis_exedens -1.409322 -1.352536 -1.528211 -1.435303
## Campylobacter_concisus -1.409322 -1.352536 -1.528211 -1.435303
## Franconibacter_helveticus -1.409322 -1.352536 -1.528211 -1.435303
## Klebsiella_pneumoniae -1.409322 -1.352536 5.598680 -1.435303
## Salmonella_enterica -1.409322 -1.352536 10.712978 -1.435303
## Superficieibacter_electus -1.409322 -1.352536 -1.528211 -1.435303
## Pseudomonas_fluorescens -1.409322 -1.352536 -1.528211 -1.435303
## Saccharomyces_cerevisiae 13.011628 13.184769 12.523077 13.518465
## S._cerevisiae x S._kudriavzevii 9.127987 9.446795 8.650063 9.783426
## Saccharomyces_kudriavzevii 8.776558 8.999892 7.883273 8.770324
## Cryptococcus_gattii_VGI 10.208143 11.012709 11.049594 11.451237
## Cryptococcus_gattii_VGII 11.364876 11.856979 11.772595 12.051732
## Cryptococcus_gattii_VGIII 11.747922 12.208462 12.277611 12.501030
## Cryptococcus_neoformans 12.495667 13.038786 12.830506 13.216128
## Listeria_marthii 5.248689 6.403660 5.129800 5.222708
## Erwinia_persicina -1.409322 -1.352536 -1.528211 -1.435303
## Pseudomonas_formosensis 4.638050 -1.352536 -1.528211 -1.435303
## Pseudomonas_putida -1.409322 -1.352536 -1.528211 -1.435303
## ben_pos_1 molysis_pos_5 molysis_pos_4
## Actinobaculum_sp_oral_taxon_183 -1.406079 -1.557874 -1.617297
## Actinomyces_georgiae -1.406079 -1.557874 -1.617297
## Actinomyces_graevenitzii -1.406079 -1.557874 -1.617297
## Actinomyces_hongkongensis -1.406079 -1.557874 -1.617297
## Actinomyces_johnsonii -1.406079 -1.557874 -1.617297
## Actinomyces_massiliensis -1.406079 -1.557874 -1.617297
## Actinomyces_meyeri -1.406079 -1.557874 -1.617297
## Actinomyces_naeslundii -1.406079 -1.557874 -1.617297
## Actinomyces_odontolyticus -1.406079 -1.557874 -1.617297
## Actinomyces_oris -1.406079 -1.557874 -1.617297
## Actinomyces_sp_HMSC035G02 -1.406079 -1.557874 -1.617297
## Actinomyces_sp_HPA0247 -1.406079 -1.557874 -1.617297
## Actinomyces_sp_ICM47 -1.406079 -1.557874 -1.617297
## Actinomyces_sp_S6_Spd3 -1.406079 -1.557874 -1.617297
## Actinomyces_sp_oral_taxon_170 -1.406079 -1.557874 -1.617297
## Actinomyces_sp_oral_taxon_180 -1.406079 -1.557874 -1.617297
## Actinomyces_sp_oral_taxon_181 -1.406079 -1.557874 -1.617297
## Actinomyces_sp_oral_taxon_414 -1.406079 -1.557874 -1.617297
## Actinomyces_sp_oral_taxon_448 -1.406079 -1.557874 -1.617297
## Actinomyces_sp_oral_taxon_897 -1.406079 -1.557874 -1.617297
## Actinomyces_viscosus -1.406079 -1.557874 -1.617297
## Aeriscardovia_aeriphila -1.406079 -1.557874 -1.617297
## Alloscardovia_omnicolens -1.406079 -1.557874 -1.617297
## Bifidobacterium_dentium -1.406079 -1.557874 -1.617297
## Bifidobacterium_longum -1.406079 -1.557874 -1.617297
## Scardovia_wiggsiae -1.406079 -1.557874 -1.617297
## Corynebacterium_accolens -1.406079 -1.557874 -1.617297
## Corynebacterium_atypicum -1.406079 -1.557874 -1.617297
## Corynebacterium_durum -1.406079 -1.557874 -1.617297
## Corynebacterium_matruchotii -1.406079 -1.557874 -1.617297
## Corynebacterium_pseudodiphtheriticum -1.406079 -1.557874 -1.617297
## Corynebacterium_pseudogenitalium -1.406079 -1.557874 -1.617297
## Corynebacterium_tuberculostearicum -1.406079 -1.557874 -1.617297
## Rothia_aeria -1.406079 -1.557874 -1.617297
## Rothia_dentocariosa -1.406079 -1.557874 -1.617297
## Rothia_mucilaginosa -1.406079 -1.557874 -1.617297
## Cutibacterium_acnes -1.406079 -1.557874 -1.617297
## Cutibacterium_granulosum -1.406079 -1.557874 -1.617297
## Propionibacterium_humerusii -1.406079 -1.557874 -1.617297
## Propionibacterium_namnetense -1.406079 -1.557874 -1.617297
## Propionibacterium_acidifaciens -1.406079 -1.557874 -1.617297
## Pseudopropionibacterium_propionicum -1.406079 -1.557874 -1.617297
## Atopobium_deltae -1.406079 -1.557874 -1.617297
## Atopobium_parvulum -1.406079 -1.557874 -1.617297
## Atopobium_rimae -1.406079 -1.557874 -1.617297
## Olsenella_profusa -1.406079 -1.557874 -1.617297
## Olsenella_scatoligenes -1.406079 -1.557874 -1.617297
## Olsenella_uli -1.406079 -1.557874 -1.617297
## Collinsella_aerofaciens -1.406079 -1.557874 -1.617297
## Collinsella_intestinalis -1.406079 -1.557874 -1.617297
## Collinsella_stercoris -1.406079 -1.557874 -1.617297
## Enorma_massiliensis -1.406079 -1.557874 -1.617297
## [Collinsella]_massiliensis -1.406079 -1.557874 -1.617297
## Asaccharobacter_celatus -1.406079 -1.557874 -1.617297
## Denitrobacterium_detoxificans -1.406079 -1.557874 -1.617297
## Enterorhabdus_caecimuris -1.406079 -1.557874 -1.617297
## Slackia_exigua -1.406079 -1.557874 -1.617297
## Slackia_isoflavoniconvertens -1.406079 -1.557874 -1.617297
## Rubrobacter_radiotolerans -1.406079 -1.557874 -1.617297
## Thermoleophilum_album -1.406079 -1.557874 -1.617297
## Porphyromonas_endodontalis -1.406079 -1.557874 -1.617297
## Porphyromonas_somerae -1.406079 -1.557874 -1.617297
## Prevotella_histicola -1.406079 -1.557874 -1.617297
## Prevotella_melaninogenica -1.406079 -1.557874 -1.617297
## Prevotella_oris -1.406079 -1.557874 -1.617297
## Kouleothrix_aurantiaca -1.406079 -1.557874 -1.617297
## Hydrogenibacillus_schlegelii -1.406079 -1.557874 -1.617297
## Gemella_asaccharolytica -1.406079 -1.557874 -1.617297
## Gemella_bergeri -1.406079 -1.557874 -1.617297
## Gemella_haemolysans 11.397038 10.636692 10.723355
## Gemella_morbillorum -1.406079 -1.557874 -1.617297
## Gemella_sanguinis 10.146519 8.698556 9.097499
## Brochothrix_campestris 8.035770 6.838281 7.285567
## Staphylococcus_argenteus 12.823411 12.850016 12.858742
## Staphylococcus_aureus 15.620541 15.630063 15.612800
## Staphylococcus_epidermidis -1.406079 5.924245 5.472780
## Staphylococcus_schweitzeri 10.824813 10.720384 11.017814
## Abiotrophia_defectiva -1.406079 -1.557874 -1.617297
## Abiotrophia_sp_HMSC24B09 -1.406079 -1.557874 -1.617297
## Dolosigranulum_pigrum -1.406079 -1.557874 -1.617297
## Granulicatella_adiacens -1.406079 -1.557874 -1.617297
## Granulicatella_elegans 5.395204 3.901711 4.448811
## Enterococcus_faecalis 15.217262 13.065119 12.900536
## Lactobacillus_rhamnosus -1.406079 -1.557874 -1.617297
## Streptococcus_anginosus -1.406079 -1.557874 -1.617297
## Streptococcus_australis -1.406079 -1.557874 -1.617297
## Streptococcus_cristatus -1.406079 -1.557874 -1.617297
## Streptococcus_gordonii -1.406079 -1.557874 -1.617297
## Streptococcus_infantis -1.406079 -1.557874 -1.617297
## Streptococcus_milleri -1.406079 -1.557874 -1.617297
## Streptococcus_mitis -1.406079 -1.557874 -1.617297
## Streptococcus_oralis -1.406079 -1.557874 -1.617297
## Streptococcus_parasanguinis -1.406079 -1.557874 -1.617297
## Streptococcus_peroris -1.406079 -1.557874 -1.617297
## Streptococcus_pneumoniae -1.406079 -1.557874 -1.617297
## Streptococcus_pseudopneumoniae -1.406079 -1.557874 -1.617297
## Streptococcus_salivarius -1.406079 -1.557874 -1.617297
## Streptococcus_sanguinis -1.406079 -1.557874 -1.617297
## Streptococcus_sp_A12 -1.406079 -1.557874 -1.617297
## Streptococcus_sp_F0442 -1.406079 -1.557874 -1.617297
## Streptococcus_sp_HMSC034E03 -1.406079 -1.557874 -1.617297
## Streptococcus_sp_HMSC067H01 -1.406079 -1.557874 -1.617297
## Streptococcus_sp_HMSC071D03 -1.406079 -1.557874 -1.617297
## Streptococcus_sp_HPH0090 -1.406079 -1.557874 -1.617297
## Streptococcus_sp_M334 -1.406079 -1.557874 -1.617297
## Streptococcus_vestibularis -1.406079 -1.557874 -1.617297
## Eubacterium_brachy -1.406079 -1.557874 -1.617297
## Eubacterium_infirmum -1.406079 -1.557874 -1.617297
## Eubacterium_nodatum -1.406079 -1.557874 -1.617297
## Eubacterium_sulci -1.406079 -1.557874 -1.617297
## Mogibacterium_diversum -1.406079 -1.557874 -1.617297
## Mogibacterium_pumilum -1.406079 -1.557874 -1.617297
## Mogibacterium_timidum -1.406079 -1.557874 -1.617297
## Lachnoanaerobaculum_saburreum -1.406079 -1.557874 -1.617297
## Oribacterium_parvum -1.406079 -1.557874 -1.617297
## Oribacterium_sinus -1.406079 -1.557874 -1.617297
## Oribacterium_sp_oral_taxon_078 -1.406079 -1.557874 -1.617297
## Stomatobaculum_longum -1.406079 -1.557874 -1.617297
## Peptostreptococcus_stomatis -1.406079 -1.557874 -1.617297
## Bulleidia_extructa -1.406079 -1.557874 -1.617297
## Solobacterium_moorei -1.406079 -1.557874 -1.617297
## Limnochorda_pilosa -1.406079 -1.557874 -1.617297
## Veillonella_atypica -1.406079 -1.557874 -1.617297
## Veillonella_dispar -1.406079 -1.557874 -1.617297
## Veillonella_infantium -1.406079 -1.557874 -1.617297
## Veillonella_parvula -1.406079 -1.557874 -1.617297
## Veillonella_sp_T11011_6 -1.406079 -1.557874 -1.617297
## Anaerococcus_nagyae -1.406079 -1.557874 -1.617297
## Finegoldia_magna -1.406079 -1.557874 -1.617297
## Parvimonas_micra -1.406079 -1.557874 -1.617297
## Parvimonas_sp_oral_taxon_110 -1.406079 -1.557874 -1.617297
## Parvimonas_sp_oral_taxon_393 -1.406079 -1.557874 -1.617297
## Fusobacterium_nucleatum -1.406079 -1.557874 -1.617297
## Leptotrichia_wadei -1.406079 -1.557874 -1.617297
## Gemmata_obscuriglobus -1.406079 -1.557874 -1.617297
## Paludisphaera_borealis -1.406079 -1.557874 -1.617297
## Achromobacter_xylosoxidans -1.406079 -1.557874 -1.617297
## Cupriavidus_sp -1.406079 -1.557874 -1.617297
## Sutterella_parvirubra -1.406079 -1.557874 -1.617297
## Anaerobiospirillum_thomasii -1.406079 -1.557874 -1.617297
## Cardiobacterium_hominis -1.406079 -1.557874 -1.617297
## Cardiobacterium_valvarum -1.406079 -1.557874 -1.617297
## Alkalilimnicola_ehrlichii -1.406079 -1.557874 3.257900
## Escherichia_coli -1.406079 10.175479 10.575746
## Thiohalorhabdus_denitrificans -1.406079 -1.557874 -1.617297
## Pseudomonas_aeruginosa -1.406079 6.865228 8.345685
## Acholeplasma_oculi 5.418295 4.971545 6.197506
## Candida_albicans -1.406079 -1.557874 -1.617297
## Candida_dubliniensis -1.406079 -1.557874 -1.617297
## Candida_parapsilosis -1.406079 -1.557874 -1.617297
## Malassezia_restricta -1.406079 -1.557874 -1.617297
## Nakamurella_silvestris -1.406079 -1.557874 -1.617297
## Alloprevotella_tannerae -1.406079 -1.557874 -1.617297
## Prevotella_jejuni -1.406079 -1.557874 -1.617297
## Prevotella_pallens -1.406079 -1.557874 -1.617297
## Prevotella_salivae -1.406079 -1.557874 -1.617297
## Prevotella_sp_oral_taxon_306 -1.406079 -1.557874 -1.617297
## Prevotella_veroralis -1.406079 -1.557874 -1.617297
## Tannerella_sp_oral_taxon_808 -1.406079 -1.557874 -1.617297
## Tannerella_sp_oral_taxon_HOT_286 -1.406079 -1.557874 -1.617297
## Capnocytophaga_gingivalis -1.406079 -1.557874 -1.617297
## Bacillus_ginsengihumi 7.437825 5.981153 5.950566
## Listeria_floridensis 11.895988 11.576621 11.504662
## Agitococcus_lubricus -1.406079 -1.557874 -1.617297
## Lactobacillus_fermentum 15.419516 15.491961 15.314038
## Lactobacillus_gasseri -1.406079 -1.557874 -1.617297
## Sharpea_azabuensis -1.406079 -1.557874 -1.617297
## Streptococcus_mutans -1.406079 -1.557874 -1.617297
## Oribacterium_asaccharolyticum -1.406079 -1.557874 -1.617297
## Megasphaera_micronuciformis -1.406079 -1.557874 -1.617297
## Neisseria_flavescens -1.406079 -1.557874 -1.617297
## Neisseria_subflava -1.406079 -1.557874 -1.617297
## Stenotrophomonas_maltophilia -1.406079 -1.557874 -1.617297
## Stenotrophomonas_pavanii -1.406079 -1.557874 -1.617297
## Stenotrophomonas_rhizophila -1.406079 -1.557874 -1.617297
## Bacillus_intestinalis 14.336235 12.671000 12.526438
## Listeria_innocua 7.607517 5.846405 6.798528
## Listeria_monocytogenes 15.561189 15.358212 15.246482
## Staphylococcus_haemolyticus -1.406079 -1.557874 -1.617297
## Streptococcus_sobrinus -1.406079 -1.557874 -1.617297
## Eggerthia_catenaformis -1.406079 -1.557874 -1.617297
## Leptotrichia_sp_oral_taxon_498 -1.406079 -1.557874 -1.617297
## Rickettsia_felis -1.406079 -1.557874 -1.617297
## Haemophilus_parainfluenzae -1.406079 -1.557874 -1.617297
## Candida_orthopsilosis -1.406079 -1.557874 -1.617297
## Nannocystis_exedens -1.406079 -1.557874 -1.617297
## Campylobacter_concisus -1.406079 -1.557874 -1.617297
## Franconibacter_helveticus -1.406079 -1.557874 -1.617297
## Klebsiella_pneumoniae -1.406079 -1.557874 -1.617297
## Salmonella_enterica -1.406079 10.160983 10.562837
## Superficieibacter_electus -1.406079 -1.557874 -1.617297
## Pseudomonas_fluorescens -1.406079 -1.557874 -1.617297
## Saccharomyces_cerevisiae 13.458729 13.536774 13.559405
## S._cerevisiae x S._kudriavzevii 9.725030 9.687616 9.885245
## Saccharomyces_kudriavzevii 8.985068 9.054043 9.241625
## Cryptococcus_gattii_VGI 11.634610 11.569497 11.488209
## Cryptococcus_gattii_VGII 12.186595 12.185722 12.178777
## Cryptococcus_gattii_VGIII 12.654032 12.510518 12.057095
## Cryptococcus_neoformans 13.250975 13.177913 13.184458
## Listeria_marthii -1.406079 5.100137 5.733861
## Erwinia_persicina -1.406079 -1.557874 -1.617297
## Pseudomonas_formosensis 4.061982 -1.557874 -1.617297
## Pseudomonas_putida -1.406079 -1.557874 -1.617297
## molysis_pos_3 molysis_pos_2 molysis_pos_1
## Actinobaculum_sp_oral_taxon_183 -1.676801 -1.636672 -1.589676
## Actinomyces_georgiae -1.676801 -1.636672 -1.589676
## Actinomyces_graevenitzii -1.676801 -1.636672 -1.589676
## Actinomyces_hongkongensis -1.676801 -1.636672 -1.589676
## Actinomyces_johnsonii -1.676801 -1.636672 -1.589676
## Actinomyces_massiliensis -1.676801 -1.636672 -1.589676
## Actinomyces_meyeri -1.676801 -1.636672 -1.589676
## Actinomyces_naeslundii -1.676801 -1.636672 -1.589676
## Actinomyces_odontolyticus -1.676801 -1.636672 -1.589676
## Actinomyces_oris -1.676801 -1.636672 -1.589676
## Actinomyces_sp_HMSC035G02 -1.676801 -1.636672 -1.589676
## Actinomyces_sp_HPA0247 -1.676801 -1.636672 -1.589676
## Actinomyces_sp_ICM47 -1.676801 -1.636672 -1.589676
## Actinomyces_sp_S6_Spd3 -1.676801 -1.636672 -1.589676
## Actinomyces_sp_oral_taxon_170 -1.676801 -1.636672 -1.589676
## Actinomyces_sp_oral_taxon_180 -1.676801 -1.636672 -1.589676
## Actinomyces_sp_oral_taxon_181 -1.676801 -1.636672 -1.589676
## Actinomyces_sp_oral_taxon_414 -1.676801 -1.636672 -1.589676
## Actinomyces_sp_oral_taxon_448 -1.676801 -1.636672 -1.589676
## Actinomyces_sp_oral_taxon_897 -1.676801 -1.636672 -1.589676
## Actinomyces_viscosus -1.676801 -1.636672 -1.589676
## Aeriscardovia_aeriphila -1.676801 -1.636672 -1.589676
## Alloscardovia_omnicolens -1.676801 -1.636672 -1.589676
## Bifidobacterium_dentium -1.676801 -1.636672 -1.589676
## Bifidobacterium_longum -1.676801 -1.636672 -1.589676
## Scardovia_wiggsiae -1.676801 -1.636672 -1.589676
## Corynebacterium_accolens -1.676801 -1.636672 -1.589676
## Corynebacterium_atypicum -1.676801 -1.636672 -1.589676
## Corynebacterium_durum -1.676801 -1.636672 -1.589676
## Corynebacterium_matruchotii -1.676801 -1.636672 -1.589676
## Corynebacterium_pseudodiphtheriticum -1.676801 -1.636672 -1.589676
## Corynebacterium_pseudogenitalium -1.676801 -1.636672 -1.589676
## Corynebacterium_tuberculostearicum -1.676801 -1.636672 -1.589676
## Rothia_aeria -1.676801 -1.636672 -1.589676
## Rothia_dentocariosa -1.676801 -1.636672 -1.589676
## Rothia_mucilaginosa -1.676801 -1.636672 -1.589676
## Cutibacterium_acnes -1.676801 -1.636672 -1.589676
## Cutibacterium_granulosum -1.676801 -1.636672 -1.589676
## Propionibacterium_humerusii -1.676801 -1.636672 -1.589676
## Propionibacterium_namnetense -1.676801 -1.636672 -1.589676
## Propionibacterium_acidifaciens -1.676801 -1.636672 -1.589676
## Pseudopropionibacterium_propionicum -1.676801 -1.636672 -1.589676
## Atopobium_deltae -1.676801 -1.636672 -1.589676
## Atopobium_parvulum -1.676801 -1.636672 -1.589676
## Atopobium_rimae -1.676801 -1.636672 -1.589676
## Olsenella_profusa -1.676801 -1.636672 -1.589676
## Olsenella_scatoligenes -1.676801 -1.636672 -1.589676
## Olsenella_uli -1.676801 -1.636672 -1.589676
## Collinsella_aerofaciens -1.676801 -1.636672 -1.589676
## Collinsella_intestinalis -1.676801 -1.636672 -1.589676
## Collinsella_stercoris -1.676801 -1.636672 -1.589676
## Enorma_massiliensis -1.676801 -1.636672 -1.589676
## [Collinsella]_massiliensis -1.676801 -1.636672 -1.589676
## Asaccharobacter_celatus -1.676801 -1.636672 -1.589676
## Denitrobacterium_detoxificans -1.676801 -1.636672 -1.589676
## Enterorhabdus_caecimuris -1.676801 -1.636672 -1.589676
## Slackia_exigua -1.676801 -1.636672 -1.589676
## Slackia_isoflavoniconvertens -1.676801 -1.636672 -1.589676
## Rubrobacter_radiotolerans -1.676801 -1.636672 -1.589676
## Thermoleophilum_album -1.676801 -1.636672 -1.589676
## Porphyromonas_endodontalis -1.676801 -1.636672 -1.589676
## Porphyromonas_somerae -1.676801 -1.636672 -1.589676
## Prevotella_histicola -1.676801 -1.636672 -1.589676
## Prevotella_melaninogenica -1.676801 -1.636672 -1.589676
## Prevotella_oris -1.676801 -1.636672 -1.589676
## Kouleothrix_aurantiaca -1.676801 -1.636672 -1.589676
## Hydrogenibacillus_schlegelii 3.570223 -1.636672 -1.589676
## Gemella_asaccharolytica -1.676801 -1.636672 -1.589676
## Gemella_bergeri -1.676801 -1.636672 -1.589676
## Gemella_haemolysans 10.696416 10.122652 10.380117
## Gemella_morbillorum -1.676801 -1.636672 2.887661
## Gemella_sanguinis 10.304871 9.864363 8.620818
## Brochothrix_campestris 7.386662 6.749957 7.053974
## Staphylococcus_argenteus 12.908124 12.440621 12.642093
## Staphylococcus_aureus 15.655960 15.162755 15.391161
## Staphylococcus_epidermidis 5.823729 -1.636672 5.869087
## Staphylococcus_schweitzeri 10.851982 10.434771 10.520398
## Abiotrophia_defectiva -1.676801 -1.636672 -1.589676
## Abiotrophia_sp_HMSC24B09 -1.676801 -1.636672 -1.589676
## Dolosigranulum_pigrum -1.676801 -1.636672 -1.589676
## Granulicatella_adiacens -1.676801 -1.636672 -1.589676
## Granulicatella_elegans 4.684502 3.822913 3.703629
## Enterococcus_faecalis 13.321467 12.928295 12.745376
## Lactobacillus_rhamnosus -1.676801 -1.636672 -1.589676
## Streptococcus_anginosus -1.676801 -1.636672 -1.589676
## Streptococcus_australis -1.676801 -1.636672 -1.589676
## Streptococcus_cristatus -1.676801 -1.636672 -1.589676
## Streptococcus_gordonii -1.676801 -1.636672 -1.589676
## Streptococcus_infantis -1.676801 -1.636672 -1.589676
## Streptococcus_milleri -1.676801 -1.636672 -1.589676
## Streptococcus_mitis -1.676801 -1.636672 -1.589676
## Streptococcus_oralis -1.676801 -1.636672 -1.589676
## Streptococcus_parasanguinis -1.676801 -1.636672 -1.589676
## Streptococcus_peroris -1.676801 -1.636672 -1.589676
## Streptococcus_pneumoniae -1.676801 -1.636672 -1.589676
## Streptococcus_pseudopneumoniae -1.676801 -1.636672 -1.589676
## Streptococcus_salivarius -1.676801 -1.636672 -1.589676
## Streptococcus_sanguinis -1.676801 -1.636672 -1.589676
## Streptococcus_sp_A12 -1.676801 -1.636672 -1.589676
## Streptococcus_sp_F0442 -1.676801 -1.636672 -1.589676
## Streptococcus_sp_HMSC034E03 -1.676801 -1.636672 -1.589676
## Streptococcus_sp_HMSC067H01 -1.676801 -1.636672 -1.589676
## Streptococcus_sp_HMSC071D03 -1.676801 -1.636672 -1.589676
## Streptococcus_sp_HPH0090 -1.676801 -1.636672 -1.589676
## Streptococcus_sp_M334 -1.676801 -1.636672 -1.589676
## Streptococcus_vestibularis -1.676801 -1.636672 -1.589676
## Eubacterium_brachy -1.676801 -1.636672 -1.589676
## Eubacterium_infirmum -1.676801 -1.636672 -1.589676
## Eubacterium_nodatum -1.676801 -1.636672 -1.589676
## Eubacterium_sulci -1.676801 -1.636672 -1.589676
## Mogibacterium_diversum -1.676801 -1.636672 -1.589676
## Mogibacterium_pumilum -1.676801 -1.636672 -1.589676
## Mogibacterium_timidum -1.676801 -1.636672 -1.589676
## Lachnoanaerobaculum_saburreum -1.676801 -1.636672 -1.589676
## Oribacterium_parvum -1.676801 -1.636672 -1.589676
## Oribacterium_sinus -1.676801 -1.636672 -1.589676
## Oribacterium_sp_oral_taxon_078 -1.676801 -1.636672 -1.589676
## Stomatobaculum_longum -1.676801 -1.636672 -1.589676
## Peptostreptococcus_stomatis -1.676801 -1.636672 -1.589676
## Bulleidia_extructa -1.676801 -1.636672 -1.589676
## Solobacterium_moorei -1.676801 -1.636672 -1.589676
## Limnochorda_pilosa -1.676801 -1.636672 -1.589676
## Veillonella_atypica -1.676801 -1.636672 -1.589676
## Veillonella_dispar -1.676801 -1.636672 -1.589676
## Veillonella_infantium -1.676801 -1.636672 -1.589676
## Veillonella_parvula -1.676801 -1.636672 -1.589676
## Veillonella_sp_T11011_6 -1.676801 -1.636672 -1.589676
## Anaerococcus_nagyae -1.676801 -1.636672 -1.589676
## Finegoldia_magna -1.676801 -1.636672 -1.589676
## Parvimonas_micra -1.676801 -1.636672 -1.589676
## Parvimonas_sp_oral_taxon_110 -1.676801 -1.636672 -1.589676
## Parvimonas_sp_oral_taxon_393 -1.676801 -1.636672 -1.589676
## Fusobacterium_nucleatum -1.676801 -1.636672 -1.589676
## Leptotrichia_wadei -1.676801 -1.636672 -1.589676
## Gemmata_obscuriglobus -1.676801 -1.636672 -1.589676
## Paludisphaera_borealis -1.676801 -1.636672 -1.589676
## Achromobacter_xylosoxidans -1.676801 -1.636672 -1.589676
## Cupriavidus_sp -1.676801 -1.636672 -1.589676
## Sutterella_parvirubra -1.676801 3.045459 -1.589676
## Anaerobiospirillum_thomasii -1.676801 -1.636672 -1.589676
## Cardiobacterium_hominis -1.676801 -1.636672 -1.589676
## Cardiobacterium_valvarum -1.676801 -1.636672 -1.589676
## Alkalilimnicola_ehrlichii 4.582781 4.359780 -1.589676
## Escherichia_coli 10.925447 11.840441 11.062143
## Thiohalorhabdus_denitrificans -1.676801 1.946847 -1.589676
## Pseudomonas_aeruginosa 9.116572 9.990046 9.067960
## Acholeplasma_oculi 5.746170 5.457563 5.558670
## Candida_albicans -1.676801 -1.636672 -1.589676
## Candida_dubliniensis -1.676801 -1.636672 -1.589676
## Candida_parapsilosis -1.676801 -1.636672 -1.589676
## Malassezia_restricta -1.676801 -1.636672 -1.589676
## Nakamurella_silvestris -1.676801 -1.636672 -1.589676
## Alloprevotella_tannerae -1.676801 -1.636672 -1.589676
## Prevotella_jejuni -1.676801 -1.636672 -1.589676
## Prevotella_pallens -1.676801 -1.636672 -1.589676
## Prevotella_salivae -1.676801 -1.636672 -1.589676
## Prevotella_sp_oral_taxon_306 -1.676801 -1.636672 -1.589676
## Prevotella_veroralis -1.676801 -1.636672 -1.589676
## Tannerella_sp_oral_taxon_808 -1.676801 -1.636672 -1.589676
## Tannerella_sp_oral_taxon_HOT_286 -1.676801 -1.636672 -1.589676
## Capnocytophaga_gingivalis -1.676801 -1.636672 -1.589676
## Bacillus_ginsengihumi 6.113068 6.260252 6.683660
## Listeria_floridensis 11.572525 11.173558 11.267398
## Agitococcus_lubricus -1.676801 -1.636672 -1.589676
## Lactobacillus_fermentum 15.319231 15.010388 15.124466
## Lactobacillus_gasseri -1.676801 -1.636672 -1.589676
## Sharpea_azabuensis -1.676801 -1.636672 -1.589676
## Streptococcus_mutans -1.676801 -1.636672 -1.589676
## Oribacterium_asaccharolyticum -1.676801 -1.636672 -1.589676
## Megasphaera_micronuciformis -1.676801 -1.636672 -1.589676
## Neisseria_flavescens -1.676801 -1.636672 -1.589676
## Neisseria_subflava -1.676801 -1.636672 -1.589676
## Stenotrophomonas_maltophilia -1.676801 -1.636672 -1.589676
## Stenotrophomonas_pavanii -1.676801 -1.636672 -1.589676
## Stenotrophomonas_rhizophila -1.676801 -1.636672 -1.589676
## Bacillus_intestinalis 12.872610 12.578909 12.286208
## Listeria_innocua 6.643647 6.578605 6.625601
## Listeria_monocytogenes 15.336870 14.949290 15.019785
## Staphylococcus_haemolyticus -1.676801 -1.636672 -1.589676
## Streptococcus_sobrinus -1.676801 -1.636672 -1.589676
## Eggerthia_catenaformis -1.676801 -1.636672 -1.589676
## Leptotrichia_sp_oral_taxon_498 -1.676801 -1.636672 -1.589676
## Rickettsia_felis -1.676801 -1.636672 -1.589676
## Haemophilus_parainfluenzae -1.676801 -1.636672 -1.589676
## Candida_orthopsilosis -1.676801 -1.636672 -1.589676
## Nannocystis_exedens -1.676801 -1.636672 -1.589676
## Campylobacter_concisus -1.676801 -1.636672 -1.589676
## Franconibacter_helveticus -1.676801 -1.636672 -1.589676
## Klebsiella_pneumoniae -1.676801 5.505364 -1.589676
## Salmonella_enterica 10.971085 11.634015 10.859637
## Superficieibacter_electus -1.676801 -1.636672 -1.589676
## Pseudomonas_fluorescens -1.676801 -1.636672 -1.589676
## Saccharomyces_cerevisiae 13.553407 12.792086 13.276367
## S._cerevisiae x S._kudriavzevii 9.901950 8.628259 9.542150
## Saccharomyces_kudriavzevii 9.216414 8.179840 8.795497
## Cryptococcus_gattii_VGI 11.461631 10.481012 10.891400
## Cryptococcus_gattii_VGII 11.969544 11.409458 11.593765
## Cryptococcus_gattii_VGIII 12.053420 11.650249 12.155354
## Cryptococcus_neoformans 13.123628 12.432059 12.807465
## Listeria_marthii 6.079395 5.714486 5.761482
## Erwinia_persicina -1.676801 -1.636672 -1.589676
## Pseudomonas_formosensis -1.676801 -1.636672 -1.589676
## Pseudomonas_putida -1.676801 -1.636672 -1.589676
## lyPMA_pos_5 lyPMA_pos_4 lyPMA_pos_3
## Actinobaculum_sp_oral_taxon_183 -1.905558 -2.461709 -0.9443776
## Actinomyces_georgiae -1.905558 -2.461709 -0.9443776
## Actinomyces_graevenitzii -1.905558 -2.461709 -0.9443776
## Actinomyces_hongkongensis -1.905558 -2.461709 -0.9443776
## Actinomyces_johnsonii -1.905558 -2.461709 -0.9443776
## Actinomyces_massiliensis -1.905558 -2.461709 -0.9443776
## Actinomyces_meyeri -1.905558 -2.461709 -0.9443776
## Actinomyces_naeslundii -1.905558 -2.461709 -0.9443776
## Actinomyces_odontolyticus -1.905558 -2.461709 -0.9443776
## Actinomyces_oris -1.905558 -2.461709 -0.9443776
## Actinomyces_sp_HMSC035G02 -1.905558 -2.461709 -0.9443776
## Actinomyces_sp_HPA0247 -1.905558 -2.461709 -0.9443776
## Actinomyces_sp_ICM47 -1.905558 -2.461709 -0.9443776
## Actinomyces_sp_S6_Spd3 -1.905558 -2.461709 -0.9443776
## Actinomyces_sp_oral_taxon_170 -1.905558 -2.461709 -0.9443776
## Actinomyces_sp_oral_taxon_180 -1.905558 -2.461709 -0.9443776
## Actinomyces_sp_oral_taxon_181 -1.905558 -2.461709 -0.9443776
## Actinomyces_sp_oral_taxon_414 -1.905558 -2.461709 -0.9443776
## Actinomyces_sp_oral_taxon_448 -1.905558 -2.461709 -0.9443776
## Actinomyces_sp_oral_taxon_897 -1.905558 -2.461709 -0.9443776
## Actinomyces_viscosus -1.905558 -2.461709 -0.9443776
## Aeriscardovia_aeriphila -1.905558 -2.461709 -0.9443776
## Alloscardovia_omnicolens -1.905558 -2.461709 -0.9443776
## Bifidobacterium_dentium -1.905558 -2.461709 -0.9443776
## Bifidobacterium_longum -1.905558 -2.461709 -0.9443776
## Scardovia_wiggsiae -1.905558 -2.461709 -0.9443776
## Corynebacterium_accolens -1.905558 -2.461709 -0.9443776
## Corynebacterium_atypicum -1.905558 -2.461709 -0.9443776
## Corynebacterium_durum -1.905558 -2.461709 -0.9443776
## Corynebacterium_matruchotii -1.905558 -2.461709 -0.9443776
## Corynebacterium_pseudodiphtheriticum -1.905558 -2.461709 -0.9443776
## Corynebacterium_pseudogenitalium -1.905558 -2.461709 -0.9443776
## Corynebacterium_tuberculostearicum -1.905558 -2.461709 -0.9443776
## Rothia_aeria 6.228029 -2.461709 -0.9443776
## Rothia_dentocariosa -1.905558 -2.461709 -0.9443776
## Rothia_mucilaginosa 7.797892 -2.461709 -0.9443776
## Cutibacterium_acnes 8.767042 8.626232 7.8059887
## Cutibacterium_granulosum -1.905558 -2.461709 -0.9443776
## Propionibacterium_humerusii -1.905558 -2.461709 -0.9443776
## Propionibacterium_namnetense -1.905558 -2.461709 -0.9443776
## Propionibacterium_acidifaciens -1.905558 -2.461709 -0.9443776
## Pseudopropionibacterium_propionicum -1.905558 -2.461709 -0.9443776
## Atopobium_deltae -1.905558 -2.461709 -0.9443776
## Atopobium_parvulum -1.905558 -2.461709 -0.9443776
## Atopobium_rimae -1.905558 -2.461709 -0.9443776
## Olsenella_profusa -1.905558 -2.461709 -0.9443776
## Olsenella_scatoligenes -1.905558 -2.461709 -0.9443776
## Olsenella_uli -1.905558 -2.461709 -0.9443776
## Collinsella_aerofaciens -1.905558 2.026927 -0.9443776
## Collinsella_intestinalis -1.905558 -2.461709 -0.9443776
## Collinsella_stercoris -1.905558 -2.461709 -0.9443776
## Enorma_massiliensis -1.905558 -2.461709 -0.9443776
## [Collinsella]_massiliensis -1.905558 -2.461709 -0.9443776
## Asaccharobacter_celatus -1.905558 -2.461709 -0.9443776
## Denitrobacterium_detoxificans -1.905558 -2.461709 -0.9443776
## Enterorhabdus_caecimuris -1.905558 -2.461709 -0.9443776
## Slackia_exigua -1.905558 -2.461709 -0.9443776
## Slackia_isoflavoniconvertens -1.905558 -2.461709 -0.9443776
## Rubrobacter_radiotolerans -1.905558 -2.461709 -0.9443776
## Thermoleophilum_album 3.980546 4.368084 -0.9443776
## Porphyromonas_endodontalis -1.905558 -2.461709 -0.9443776
## Porphyromonas_somerae -1.905558 -2.461709 -0.9443776
## Prevotella_histicola -1.905558 -2.461709 -0.9443776
## Prevotella_melaninogenica 2.719414 -2.461709 -0.9443776
## Prevotella_oris -1.905558 -2.461709 -0.9443776
## Kouleothrix_aurantiaca -1.905558 3.988761 -0.9443776
## Hydrogenibacillus_schlegelii 4.427721 4.357215 -0.9443776
## Gemella_asaccharolytica -1.905558 -2.461709 -0.9443776
## Gemella_bergeri -1.905558 -2.461709 -0.9443776
## Gemella_haemolysans 7.726580 9.687999 6.7980244
## Gemella_morbillorum 3.188192 -2.461709 -0.9443776
## Gemella_sanguinis 5.335091 8.481419 5.1846726
## Brochothrix_campestris 3.878267 6.146968 -0.9443776
## Staphylococcus_argenteus 9.176430 10.974945 6.6414112
## Staphylococcus_aureus 12.027055 13.657647 10.4143355
## Staphylococcus_epidermidis -1.905558 3.544644 -0.9443776
## Staphylococcus_schweitzeri 7.176721 8.768256 -0.9443776
## Abiotrophia_defectiva -1.905558 -2.461709 -0.9443776
## Abiotrophia_sp_HMSC24B09 -1.905558 -2.461709 -0.9443776
## Dolosigranulum_pigrum -1.905558 -2.461709 -0.9443776
## Granulicatella_adiacens -1.905558 -2.461709 -0.9443776
## Granulicatella_elegans -1.905558 3.215044 -0.9443776
## Enterococcus_faecalis 12.276149 13.960808 10.8327412
## Lactobacillus_rhamnosus -1.905558 -2.461709 -0.9443776
## Streptococcus_anginosus -1.905558 -2.461709 -0.9443776
## Streptococcus_australis 4.631133 -2.461709 -0.9443776
## Streptococcus_cristatus -1.905558 -2.461709 -0.9443776
## Streptococcus_gordonii -1.905558 -2.461709 -0.9443776
## Streptococcus_infantis -1.905558 -2.461709 -0.9443776
## Streptococcus_milleri -1.905558 -2.461709 -0.9443776
## Streptococcus_mitis 5.632404 -2.461709 -0.9443776
## Streptococcus_oralis -1.905558 -2.461709 -0.9443776
## Streptococcus_parasanguinis -1.905558 -2.461709 -0.9443776
## Streptococcus_peroris -1.905558 -2.461709 -0.9443776
## Streptococcus_pneumoniae -1.905558 -2.461709 -0.9443776
## Streptococcus_pseudopneumoniae -1.905558 -2.461709 -0.9443776
## Streptococcus_salivarius -1.905558 -2.461709 -0.9443776
## Streptococcus_sanguinis -1.905558 -2.461709 -0.9443776
## Streptococcus_sp_A12 -1.905558 -2.461709 -0.9443776
## Streptococcus_sp_F0442 -1.905558 -2.461709 -0.9443776
## Streptococcus_sp_HMSC034E03 -1.905558 -2.461709 -0.9443776
## Streptococcus_sp_HMSC067H01 -1.905558 -2.461709 -0.9443776
## Streptococcus_sp_HMSC071D03 -1.905558 -2.461709 -0.9443776
## Streptococcus_sp_HPH0090 -1.905558 -2.461709 -0.9443776
## Streptococcus_sp_M334 -1.905558 -2.461709 -0.9443776
## Streptococcus_vestibularis -1.905558 -2.461709 -0.9443776
## Eubacterium_brachy -1.905558 -2.461709 -0.9443776
## Eubacterium_infirmum -1.905558 -2.461709 -0.9443776
## Eubacterium_nodatum -1.905558 -2.461709 -0.9443776
## Eubacterium_sulci -1.905558 -2.461709 -0.9443776
## Mogibacterium_diversum -1.905558 -2.461709 -0.9443776
## Mogibacterium_pumilum -1.905558 -2.461709 -0.9443776
## Mogibacterium_timidum -1.905558 -2.461709 -0.9443776
## Lachnoanaerobaculum_saburreum -1.905558 -2.461709 -0.9443776
## Oribacterium_parvum -1.905558 -2.461709 -0.9443776
## Oribacterium_sinus -1.905558 -2.461709 -0.9443776
## Oribacterium_sp_oral_taxon_078 -1.905558 -2.461709 -0.9443776
## Stomatobaculum_longum -1.905558 -2.461709 -0.9443776
## Peptostreptococcus_stomatis -1.905558 -2.461709 -0.9443776
## Bulleidia_extructa -1.905558 -2.461709 -0.9443776
## Solobacterium_moorei -1.905558 -2.461709 -0.9443776
## Limnochorda_pilosa -1.905558 5.035498 -0.9443776
## Veillonella_atypica -1.905558 -2.461709 -0.9443776
## Veillonella_dispar -1.905558 -2.461709 -0.9443776
## Veillonella_infantium -1.905558 -2.461709 -0.9443776
## Veillonella_parvula -1.905558 -2.461709 -0.9443776
## Veillonella_sp_T11011_6 -1.905558 -2.461709 -0.9443776
## Anaerococcus_nagyae -1.905558 -2.461709 -0.9443776
## Finegoldia_magna -1.905558 -2.461709 -0.9443776
## Parvimonas_micra -1.905558 -2.461709 -0.9443776
## Parvimonas_sp_oral_taxon_110 -1.905558 -2.461709 -0.9443776
## Parvimonas_sp_oral_taxon_393 -1.905558 -2.461709 -0.9443776
## Fusobacterium_nucleatum -1.905558 -2.461709 -0.9443776
## Leptotrichia_wadei -1.905558 -2.461709 -0.9443776
## Gemmata_obscuriglobus 4.278590 3.762849 -0.9443776
## Paludisphaera_borealis 4.496359 5.206384 -0.9443776
## Achromobacter_xylosoxidans -1.905558 -2.461709 -0.9443776
## Cupriavidus_sp 8.576731 6.261847 6.7180902
## Sutterella_parvirubra 3.422318 6.433098 4.3489272
## Anaerobiospirillum_thomasii -1.905558 4.036573 -0.9443776
## Cardiobacterium_hominis -1.905558 -2.461709 -0.9443776
## Cardiobacterium_valvarum -1.905558 -2.461709 -0.9443776
## Alkalilimnicola_ehrlichii 5.970321 7.795704 -0.9443776
## Escherichia_coli 12.161714 14.106884 12.1032816
## Thiohalorhabdus_denitrificans 4.937125 7.126039 3.3460818
## Pseudomonas_aeruginosa 10.578801 12.938084 10.5376349
## Acholeplasma_oculi -1.905558 3.876885 -0.9443776
## Candida_albicans -1.905558 -2.461709 -0.9443776
## Candida_dubliniensis -1.905558 -2.461709 -0.9443776
## Candida_parapsilosis -1.905558 -2.461709 -0.9443776
## Malassezia_restricta -1.905558 4.890090 -0.9443776
## Nakamurella_silvestris -1.905558 -2.461709 -0.9443776
## Alloprevotella_tannerae -1.905558 -2.461709 -0.9443776
## Prevotella_jejuni -1.905558 -2.461709 -0.9443776
## Prevotella_pallens -1.905558 -2.461709 -0.9443776
## Prevotella_salivae -1.905558 -2.461709 -0.9443776
## Prevotella_sp_oral_taxon_306 4.088403 -2.461709 -0.9443776
## Prevotella_veroralis -1.905558 -2.461709 -0.9443776
## Tannerella_sp_oral_taxon_808 -1.905558 -2.461709 -0.9443776
## Tannerella_sp_oral_taxon_HOT_286 -1.905558 -2.461709 -0.9443776
## Capnocytophaga_gingivalis -1.905558 -2.461709 -0.9443776
## Bacillus_ginsengihumi -1.905558 5.792819 -0.9443776
## Listeria_floridensis 8.490458 10.294733 7.0173412
## Agitococcus_lubricus 4.296977 5.356318 -0.9443776
## Lactobacillus_fermentum 12.559552 14.114196 11.7639722
## Lactobacillus_gasseri -1.905558 -2.461709 -0.9443776
## Sharpea_azabuensis -1.905558 -2.461709 -0.9443776
## Streptococcus_mutans -1.905558 -2.461709 -0.9443776
## Oribacterium_asaccharolyticum -1.905558 -2.461709 -0.9443776
## Megasphaera_micronuciformis -1.905558 -2.461709 -0.9443776
## Neisseria_flavescens 5.548583 -2.461709 -0.9443776
## Neisseria_subflava 5.141089 -2.461709 -0.9443776
## Stenotrophomonas_maltophilia -1.905558 -2.461709 -0.9443776
## Stenotrophomonas_pavanii -1.905558 -2.461709 -0.9443776
## Stenotrophomonas_rhizophila -1.905558 -2.461709 -0.9443776
## Bacillus_intestinalis 12.352952 14.152452 11.5138263
## Listeria_innocua -1.905558 5.502098 -0.9443776
## Listeria_monocytogenes 12.262686 13.995628 11.0507332
## Staphylococcus_haemolyticus -1.905558 -2.461709 -0.9443776
## Streptococcus_sobrinus -1.905558 -2.461709 -0.9443776
## Eggerthia_catenaformis -1.905558 -2.461709 -0.9443776
## Leptotrichia_sp_oral_taxon_498 -1.905558 -2.461709 -0.9443776
## Rickettsia_felis -1.905558 -2.461709 -0.9443776
## Haemophilus_parainfluenzae 7.920184 -2.461709 -0.9443776
## Candida_orthopsilosis -1.905558 -2.461709 -0.9443776
## Nannocystis_exedens 2.757881 3.265138 -0.9443776
## Campylobacter_concisus -1.905558 -2.461709 -0.9443776
## Franconibacter_helveticus 3.655123 6.366785 -0.9443776
## Klebsiella_pneumoniae 5.236478 8.012334 -0.9443776
## Salmonella_enterica 12.027773 13.906989 11.8888546
## Superficieibacter_electus -1.905558 5.823804 -0.9443776
## Pseudomonas_fluorescens -1.905558 5.472087 -0.9443776
## Saccharomyces_cerevisiae 10.942218 12.088621 9.7268310
## S._cerevisiae x S._kudriavzevii -1.905558 7.832908 -0.9443776
## Saccharomyces_kudriavzevii 4.930701 7.443676 -0.9443776
## Cryptococcus_gattii_VGI 7.035987 10.109916 -0.9443776
## Cryptococcus_gattii_VGII 9.210183 10.808429 -0.9443776
## Cryptococcus_gattii_VGIII -1.905558 10.939987 9.3133519
## Cryptococcus_neoformans 10.861255 11.764240 9.7535945
## Listeria_marthii -1.905558 -2.461709 -0.9443776
## Erwinia_persicina -1.905558 3.816812 -0.9443776
## Pseudomonas_formosensis 6.180236 4.518366 6.0614114
## Pseudomonas_putida -1.905558 4.450038 -0.9443776
## lyPMA_pos_2 lyPMA_pos_1
## Actinobaculum_sp_oral_taxon_183 -2.282244 -0.7852059
## Actinomyces_georgiae -2.282244 -0.7852059
## Actinomyces_graevenitzii -2.282244 -0.7852059
## Actinomyces_hongkongensis -2.282244 -0.7852059
## Actinomyces_johnsonii -2.282244 -0.7852059
## Actinomyces_massiliensis -2.282244 -0.7852059
## Actinomyces_meyeri -2.282244 -0.7852059
## Actinomyces_naeslundii -2.282244 -0.7852059
## Actinomyces_odontolyticus -2.282244 -0.7852059
## Actinomyces_oris -2.282244 -0.7852059
## Actinomyces_sp_HMSC035G02 -2.282244 -0.7852059
## Actinomyces_sp_HPA0247 -2.282244 -0.7852059
## Actinomyces_sp_ICM47 -2.282244 -0.7852059
## Actinomyces_sp_S6_Spd3 -2.282244 -0.7852059
## Actinomyces_sp_oral_taxon_170 -2.282244 -0.7852059
## Actinomyces_sp_oral_taxon_180 -2.282244 -0.7852059
## Actinomyces_sp_oral_taxon_181 -2.282244 -0.7852059
## Actinomyces_sp_oral_taxon_414 -2.282244 -0.7852059
## Actinomyces_sp_oral_taxon_448 -2.282244 -0.7852059
## Actinomyces_sp_oral_taxon_897 -2.282244 -0.7852059
## Actinomyces_viscosus -2.282244 -0.7852059
## Aeriscardovia_aeriphila -2.282244 -0.7852059
## Alloscardovia_omnicolens -2.282244 -0.7852059
## Bifidobacterium_dentium -2.282244 -0.7852059
## Bifidobacterium_longum -2.282244 -0.7852059
## Scardovia_wiggsiae -2.282244 -0.7852059
## Corynebacterium_accolens -2.282244 -0.7852059
## Corynebacterium_atypicum -2.282244 -0.7852059
## Corynebacterium_durum -2.282244 -0.7852059
## Corynebacterium_matruchotii -2.282244 -0.7852059
## Corynebacterium_pseudodiphtheriticum -2.282244 -0.7852059
## Corynebacterium_pseudogenitalium -2.282244 -0.7852059
## Corynebacterium_tuberculostearicum -2.282244 -0.7852059
## Rothia_aeria -2.282244 -0.7852059
## Rothia_dentocariosa -2.282244 -0.7852059
## Rothia_mucilaginosa -2.282244 -0.7852059
## Cutibacterium_acnes 8.551476 9.8469407
## Cutibacterium_granulosum 5.777032 -0.7852059
## Propionibacterium_humerusii -2.282244 -0.7852059
## Propionibacterium_namnetense -2.282244 -0.7852059
## Propionibacterium_acidifaciens -2.282244 -0.7852059
## Pseudopropionibacterium_propionicum -2.282244 -0.7852059
## Atopobium_deltae -2.282244 -0.7852059
## Atopobium_parvulum -2.282244 -0.7852059
## Atopobium_rimae -2.282244 -0.7852059
## Olsenella_profusa -2.282244 -0.7852059
## Olsenella_scatoligenes -2.282244 -0.7852059
## Olsenella_uli -2.282244 -0.7852059
## Collinsella_aerofaciens -2.282244 -0.7852059
## Collinsella_intestinalis -2.282244 -0.7852059
## Collinsella_stercoris -2.282244 -0.7852059
## Enorma_massiliensis -2.282244 -0.7852059
## [Collinsella]_massiliensis 2.183664 -0.7852059
## Asaccharobacter_celatus -2.282244 -0.7852059
## Denitrobacterium_detoxificans -2.282244 -0.7852059
## Enterorhabdus_caecimuris -2.282244 -0.7852059
## Slackia_exigua -2.282244 -0.7852059
## Slackia_isoflavoniconvertens -2.282244 -0.7852059
## Rubrobacter_radiotolerans 2.409104 -0.7852059
## Thermoleophilum_album 4.788480 -0.7852059
## Porphyromonas_endodontalis -2.282244 -0.7852059
## Porphyromonas_somerae -2.282244 -0.7852059
## Prevotella_histicola -2.282244 -0.7852059
## Prevotella_melaninogenica -2.282244 -0.7852059
## Prevotella_oris -2.282244 -0.7852059
## Kouleothrix_aurantiaca 4.837391 -0.7852059
## Hydrogenibacillus_schlegelii 5.362675 -0.7852059
## Gemella_asaccharolytica -2.282244 -0.7852059
## Gemella_bergeri -2.282244 -0.7852059
## Gemella_haemolysans 8.628416 5.9844360
## Gemella_morbillorum -2.282244 -0.7852059
## Gemella_sanguinis 6.014302 3.9769680
## Brochothrix_campestris 5.212742 -0.7852059
## Staphylococcus_argenteus 9.750677 7.7184967
## Staphylococcus_aureus 12.376302 10.7238019
## Staphylococcus_epidermidis -2.282244 4.7037318
## Staphylococcus_schweitzeri 8.186301 -0.7852059
## Abiotrophia_defectiva -2.282244 -0.7852059
## Abiotrophia_sp_HMSC24B09 -2.282244 -0.7852059
## Dolosigranulum_pigrum -2.282244 -0.7852059
## Granulicatella_adiacens -2.282244 -0.7852059
## Granulicatella_elegans 2.666516 -0.7852059
## Enterococcus_faecalis 12.907628 10.4917440
## Lactobacillus_rhamnosus -2.282244 -0.7852059
## Streptococcus_anginosus -2.282244 -0.7852059
## Streptococcus_australis -2.282244 -0.7852059
## Streptococcus_cristatus -2.282244 -0.7852059
## Streptococcus_gordonii -2.282244 -0.7852059
## Streptococcus_infantis -2.282244 -0.7852059
## Streptococcus_milleri -2.282244 -0.7852059
## Streptococcus_mitis -2.282244 -0.7852059
## Streptococcus_oralis -2.282244 -0.7852059
## Streptococcus_parasanguinis -2.282244 -0.7852059
## Streptococcus_peroris -2.282244 -0.7852059
## Streptococcus_pneumoniae -2.282244 -0.7852059
## Streptococcus_pseudopneumoniae -2.282244 -0.7852059
## Streptococcus_salivarius -2.282244 -0.7852059
## Streptococcus_sanguinis -2.282244 -0.7852059
## Streptococcus_sp_A12 -2.282244 -0.7852059
## Streptococcus_sp_F0442 -2.282244 -0.7852059
## Streptococcus_sp_HMSC034E03 -2.282244 -0.7852059
## Streptococcus_sp_HMSC067H01 -2.282244 -0.7852059
## Streptococcus_sp_HMSC071D03 -2.282244 -0.7852059
## Streptococcus_sp_HPH0090 -2.282244 -0.7852059
## Streptococcus_sp_M334 -2.282244 -0.7852059
## Streptococcus_vestibularis -2.282244 -0.7852059
## Eubacterium_brachy -2.282244 -0.7852059
## Eubacterium_infirmum -2.282244 -0.7852059
## Eubacterium_nodatum -2.282244 -0.7852059
## Eubacterium_sulci -2.282244 -0.7852059
## Mogibacterium_diversum -2.282244 -0.7852059
## Mogibacterium_pumilum -2.282244 -0.7852059
## Mogibacterium_timidum -2.282244 -0.7852059
## Lachnoanaerobaculum_saburreum -2.282244 -0.7852059
## Oribacterium_parvum -2.282244 -0.7852059
## Oribacterium_sinus -2.282244 -0.7852059
## Oribacterium_sp_oral_taxon_078 -2.282244 -0.7852059
## Stomatobaculum_longum -2.282244 -0.7852059
## Peptostreptococcus_stomatis -2.282244 -0.7852059
## Bulleidia_extructa -2.282244 -0.7852059
## Solobacterium_moorei -2.282244 -0.7852059
## Limnochorda_pilosa -2.282244 -0.7852059
## Veillonella_atypica -2.282244 -0.7852059
## Veillonella_dispar -2.282244 -0.7852059
## Veillonella_infantium -2.282244 -0.7852059
## Veillonella_parvula -2.282244 -0.7852059
## Veillonella_sp_T11011_6 -2.282244 -0.7852059
## Anaerococcus_nagyae -2.282244 -0.7852059
## Finegoldia_magna 6.095457 -0.7852059
## Parvimonas_micra -2.282244 -0.7852059
## Parvimonas_sp_oral_taxon_110 -2.282244 -0.7852059
## Parvimonas_sp_oral_taxon_393 -2.282244 -0.7852059
## Fusobacterium_nucleatum -2.282244 -0.7852059
## Leptotrichia_wadei -2.282244 -0.7852059
## Gemmata_obscuriglobus 4.968391 -0.7852059
## Paludisphaera_borealis 5.358840 -0.7852059
## Achromobacter_xylosoxidans -2.282244 -0.7852059
## Cupriavidus_sp 8.384569 8.9696656
## Sutterella_parvirubra 6.350596 3.8591849
## Anaerobiospirillum_thomasii -2.282244 -0.7852059
## Cardiobacterium_hominis -2.282244 -0.7852059
## Cardiobacterium_valvarum -2.282244 -0.7852059
## Alkalilimnicola_ehrlichii 8.030236 5.6050347
## Escherichia_coli 14.179598 10.6948037
## Thiohalorhabdus_denitrificans 7.196901 -0.7852059
## Pseudomonas_aeruginosa 12.882402 9.7286448
## Acholeplasma_oculi 2.615596 -0.7852059
## Candida_albicans -2.282244 -0.7852059
## Candida_dubliniensis -2.282244 -0.7852059
## Candida_parapsilosis -2.282244 -0.7852059
## Malassezia_restricta -2.282244 -0.7852059
## Nakamurella_silvestris -2.282244 -0.7852059
## Alloprevotella_tannerae -2.282244 -0.7852059
## Prevotella_jejuni -2.282244 -0.7852059
## Prevotella_pallens -2.282244 -0.7852059
## Prevotella_salivae -2.282244 -0.7852059
## Prevotella_sp_oral_taxon_306 -2.282244 -0.7852059
## Prevotella_veroralis -2.282244 -0.7852059
## Tannerella_sp_oral_taxon_808 -2.282244 -0.7852059
## Tannerella_sp_oral_taxon_HOT_286 -2.282244 -0.7852059
## Capnocytophaga_gingivalis -2.282244 -0.7852059
## Bacillus_ginsengihumi 4.752144 -0.7852059
## Listeria_floridensis 9.157228 6.4892736
## Agitococcus_lubricus 4.391054 -0.7852059
## Lactobacillus_fermentum 13.019357 9.5473005
## Lactobacillus_gasseri -2.282244 -0.7852059
## Sharpea_azabuensis -2.282244 -0.7852059
## Streptococcus_mutans -2.282244 -0.7852059
## Oribacterium_asaccharolyticum -2.282244 -0.7852059
## Megasphaera_micronuciformis -2.282244 -0.7852059
## Neisseria_flavescens -2.282244 -0.7852059
## Neisseria_subflava -2.282244 -0.7852059
## Stenotrophomonas_maltophilia -2.282244 -0.7852059
## Stenotrophomonas_pavanii -2.282244 -0.7852059
## Stenotrophomonas_rhizophila -2.282244 -0.7852059
## Bacillus_intestinalis 13.636183 9.8944133
## Listeria_innocua -2.282244 -0.7852059
## Listeria_monocytogenes 12.866372 10.7756808
## Staphylococcus_haemolyticus -2.282244 -0.7852059
## Streptococcus_sobrinus -2.282244 -0.7852059
## Eggerthia_catenaformis -2.282244 -0.7852059
## Leptotrichia_sp_oral_taxon_498 -2.282244 -0.7852059
## Rickettsia_felis -2.282244 -0.7852059
## Haemophilus_parainfluenzae -2.282244 -0.7852059
## Candida_orthopsilosis -2.282244 -0.7852059
## Nannocystis_exedens 4.439182 -0.7852059
## Campylobacter_concisus -2.282244 -0.7852059
## Franconibacter_helveticus 6.073371 -0.7852059
## Klebsiella_pneumoniae 8.155424 -0.7852059
## Salmonella_enterica 14.207313 10.3143533
## Superficieibacter_electus 5.768140 -0.7852059
## Pseudomonas_fluorescens 5.476943 -0.7852059
## Saccharomyces_cerevisiae 11.606467 -0.7852059
## S._cerevisiae x S._kudriavzevii 7.096488 -0.7852059
## Saccharomyces_kudriavzevii 6.985043 -0.7852059
## Cryptococcus_gattii_VGI 7.705447 -0.7852059
## Cryptococcus_gattii_VGII 9.456278 -0.7852059
## Cryptococcus_gattii_VGIII 9.884433 -0.7852059
## Cryptococcus_neoformans 11.018700 -0.7852059
## Listeria_marthii -2.282244 -0.7852059
## Erwinia_persicina 3.983057 -0.7852059
## Pseudomonas_formosensis 5.343351 5.9386265
## Pseudomonas_putida 5.292828 -0.7852059 #It seems like adding pseudo counts does not change the association, as they were `centered`.
#How about using relative abundance?
physeq0_clr_all_rel <- phyloseq$phyloseq_rel_filtered %>%
microbiome::transform(., 'clr')
# CLR transformation was conducted after stratifying the data by sample type
physeq0_clr_spt <- subset_samples(phyloseq$phyloseq_count_filtered, sample_type == "Sputum") %>%
microbiome::transform(., 'clr')
physeq0_clr_bal <- subset_samples(phyloseq$phyloseq_count_filtered, sample_type == "BAL") %>%
microbiome::transform(., 'clr')
physeq0_clr_ns <- subset_samples(phyloseq$phyloseq_count_filtered, sample_type == "Nasal") %>%
microbiome::transform(., 'clr')Other transformation methods
Amy’s function for CLR normalization function
geometric_mean <- function(x, replace_zeros = "minimum") {
# pseudocounts
if (replace_zeros == "minimum") {
x[x == 0] <- min(x[x > 0]) # cheap pseudocount - take minimum
} else if (replace_zeros == "half") {
x[x == 0] <- min(x[x > 0])/2 # cheap pseudocount - take half minimum
} else if (is.numeric(replace_zeros)) {
if (replace_zeros <= 0) stop("You've told me to replace zeroes with zero, or a nonnegative value!")
x[x == 0] <- replace_zeros
}
if (any(x == 0)) stop("There are zeros in x and you haven't told me what to do with them!")
stopifnot(all(x >= 0))
## convert to relative abundance:
pz <- x/sum(x)
prod(pz)^(1/length(pz))
}
clr <- function(x, replace_zeros = "minimum") {
stopifnot(all(x >= 0))
# pseudocounts
if (replace_zeros == "minimum") {
x[x == 0] <- min(x[x > 0]) # cheap pseudocount - take minimum
} else if (replace_zeros == "half") {
x[x == 0] <- min(x[x > 0])/2 # cheap pseudocount - take half minimum
} else if (is.numeric(replace_zeros)) {
if (replace_zeros <= 0) stop("You've told me to replace zeroes with zero, or a nonnegative value!")
x[x == 0] <- replace_zeros
}
if (any(x == 0)) stop("There are zeros in x and you haven't told me what to do with them!")
## convert to relative abundance:
pz <- x/sum(x)
gz <- prod(pz)^(1/length(pz))
log(pz/gz)
}
### examples
#clr(c(1))
clr(c(0.2, 0.1, 0.7, 0), replace_zeros=0.05) ## [1] 0.2066696 -0.4864775 1.4594326 -1.1796247 #clr(c(0.2, 0.1, 0.7, 0), replace_zeros=0.01)
#clr(c(0.2, 0.1, 0.7, 0))
#clr(c(0.2, 0.1, 0.7, 0), replace_zeros=0.1)
#clr(c(0.2, 0.1, 0.7, 0), replace_zeros=-0.1) # goodAmy’s function to my data
clr(otu_table(phyloseq$phyloseq_rel_filtered) %>% data.frame %>% .$lyPMA_pos_1,
replace_zeros = "minimum") ## [1] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [19] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [37] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [55] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [73] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [91] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [109] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [127] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [145] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [163] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [181] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [199] Inf Inf Inf Inf InfIt does not work..
clr(otu_table(phyloseq$phyloseq_rel_filtered) %>% data.frame %>% .$lyPMA_pos_1,
replace_zeros = "half") ## [1] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [19] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [37] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [55] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [73] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [91] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [109] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [127] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [145] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [163] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [181] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [199] Inf Inf Inf Inf InfIt does not work.. 2
clr(otu_table(phyloseq$phyloseq_rel_filtered) %>% data.frame %>% .$lyPMA_pos_1,
replace_zeros = 0.000000000000001) ## [1] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [19] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [37] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [55] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [73] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [91] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [109] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [127] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [145] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [163] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [181] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [199] Inf Inf Inf Inf InfIt does not work.. 3
clr(otu_table(phyloseq$phyloseq_count_filtered) %>% data.frame %>% .$lyPMA_pos_1,
replace_zeros = 1) ## [1] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [19] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [37] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [55] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [73] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [91] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [109] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [127] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [145] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [163] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [181] Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf Inf
## [199] Inf Inf Inf Inf Inf # For now it is resulting in Inf! Something need to be fixed.It does not work..4
compositions::clr()
compositions::clr(otu_table(phyloseq$phyloseq_count_filtered)) %>% data.frame %>% headCompositions does not change zeros.
CLR transform - Sanity check
microbiome::transform vs MaAslin
# Original data
phyloseq$phyloseq_count_filtered %>% otu_table %>% t %>% data.frame() %>% head() # CLR transformed data, all samples at once
physeq0_clr_bal %>% otu_table %>% t %>% data.frame() %>% head() # CLR transformed data, all samples at once
maaslin_bal_transformed_otu %>% head()It seems like CLR-transformed data may result in changes from 0-0 reads.
microbiome::transform vs MaAslin
#ORder check - their order is the same
maaslin_bal_transformed_otu$feature == physeq0_clr_bal %>% otu_table %>% t %>% data.frame() %>% row.names()## [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
## [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUEplot(x = maaslin_bal_transformed_otu$Cupriavidus_sp,
y = physeq0_clr_bal %>% otu_table %>% t %>% data.frame() %>% .$Cupriavidus_sp,
xlab = "maaslin:: normalized CLR value",
ylab = "microbiome:: normalized CLR value",
main = "Cupriavidus CLR transformation")
LME4 for CLR normalized data
LME4 for CLR normalized data (total)
#Running LME4 for each taxa
lmer_taxa <- data.frame()
for(i in 1:203) {
#Creating a data frame that includes CLR transformed data of i-th bug.
#making differnt otu tables for each sample type
otu_table_bal <- physeq0_clr_bal %>% otu_table
otu_table_ns <- physeq0_clr_ns %>% otu_table
otu_table_spt <- physeq0_clr_spt %>% otu_table
#tax table for different sample type
taxa_data_bal <- otu_table_bal[i] %>% t %>% data.frame()
taxa_data_ns <- otu_table_ns[i] %>% t %>% data.frame()
taxa_data_spt <- otu_table_spt[i] %>% t %>% data.frame()
#Making a merged dataframe having sample data and CLR transformed output
lme_data_bal <- merge(taxa_data_bal, sample_data(physeq0_clr_bal), by = 0) %>% column_to_rownames("Row.names")
lme_data_ns <- merge(taxa_data_ns, sample_data(physeq0_clr_ns), by = 0) %>% column_to_rownames("Row.names")
lme_data_spt <- merge(taxa_data_spt, sample_data(physeq0_clr_spt), by = 0) %>% column_to_rownames("Row.names")
#generating a character of formula.
#Here, as the taxa are already CLR transformed, I did not make model at log-scale.
lme4_formula <- paste(names(taxa_data_bal), "~", "lypma + benzonase + host_zero + molysis + qiaamp + (1|subject_id)")
#BAL stratified analysis
BAL_result <- lme4::lmer(formula = lme4_formula,
data = lme_data_bal) %>%
lmerTest::as_lmerModLmerTest() %>% # p-value calculated by lmerTest
summary %>%
.$coefficients %>%
data.frame(check.names = F) %>%
mutate(taxa = names(taxa_data_bal),
sample_type = "BAL") %>%
rownames_to_column("metadata") %>%
subset(., .$metadata %in% c("lypma", "benzonase", "host_zero", "molysis", "qiaamp"))
#Nasal stratified analysis
Nasal_result <- lme4::lmer(formula = lme4_formula,
data = lme_data_ns) %>%
lmerTest::as_lmerModLmerTest() %>%
summary %>%
.$coefficients %>%
data.frame(check.names = F) %>%
mutate(taxa = names(taxa_data_bal),
sample_type = "Nasal") %>%
rownames_to_column("metadata") %>%
subset(., .$metadata %in% c("lypma", "benzonase", "host_zero", "molysis", "qiaamp"))
#BAL stratified analysis
Sputum_result <- lme4::lmer(formula = lme4_formula,
data = lme_data_spt) %>%
lmerTest::as_lmerModLmerTest() %>%
summary %>%
.$coefficients %>%
data.frame(check.names = F) %>%
mutate(taxa = names(taxa_data_bal),
sample_type = "Sputum") %>%
rownames_to_column("metadata") %>%
subset(., .$metadata %in% c("lypma", "benzonase", "host_zero", "molysis", "qiaamp"))
#row binding all the associations of i-th taxa to one data frame
lmer_taxa <- rbind(lmer_taxa,
rbind(BAL_result, Nasal_result, Sputum_result) %>% remove_rownames()
)
}
#Calculating q-value
lmer_taxa_withzeros <- lmer_taxa %>%
mutate(q_val = qvalue::qvalue(`Pr(>|t|)`)$qvalue)MaAslin - LMER (with zeros) comparison
#Comparing lme4 otuput with maaslin output
#with BAL
maaslin_bal %>% subset(., .$qval <0.1) %>% .$feature %>% unique## [1] "Cupriavidus_sp" "Prevotella_sp_oral_taxon_306"
## [3] "Prevotella_veroralis" "Prevotella_oris"lmer_taxa_withzeros %>% subset(., .$q_val < 0.1 & .$sample_type == "BAL") %>% .$taxa %>% unique## [1] "Actinobaculum_sp_oral_taxon_183"
## [2] "Actinomyces_georgiae"
## [3] "Actinomyces_graevenitzii"
## [4] "Actinomyces_hongkongensis"
## [5] "Actinomyces_johnsonii"
## [6] "Actinomyces_massiliensis"
## [7] "Actinomyces_meyeri"
## [8] "Actinomyces_sp_HPA0247"
## [9] "Actinomyces_sp_ICM47"
## [10] "Actinomyces_sp_oral_taxon_170"
## [11] "Actinomyces_sp_oral_taxon_180"
## [12] "Actinomyces_sp_oral_taxon_181"
## [13] "Actinomyces_sp_oral_taxon_414"
## [14] "Actinomyces_sp_oral_taxon_448"
## [15] "Actinomyces_sp_oral_taxon_897"
## [16] "Actinomyces_viscosus"
## [17] "Aeriscardovia_aeriphila"
## [18] "Alloscardovia_omnicolens"
## [19] "Bifidobacterium_dentium"
## [20] "Bifidobacterium_longum"
## [21] "Corynebacterium_accolens"
## [22] "Corynebacterium_atypicum"
## [23] "Corynebacterium_durum"
## [24] "Corynebacterium_matruchotii"
## [25] "Corynebacterium_pseudodiphtheriticum"
## [26] "Corynebacterium_pseudogenitalium"
## [27] "Rothia_aeria"
## [28] "Rothia_dentocariosa"
## [29] "Cutibacterium_granulosum"
## [30] "Propionibacterium_humerusii"
## [31] "Propionibacterium_acidifaciens"
## [32] "Pseudopropionibacterium_propionicum"
## [33] "Atopobium_rimae"
## [34] "Olsenella_profusa"
## [35] "Olsenella_scatoligenes"
## [36] "Collinsella_stercoris"
## [37] "Enorma_massiliensis"
## [38] "Asaccharobacter_celatus"
## [39] "Enterorhabdus_caecimuris"
## [40] "Rubrobacter_radiotolerans"
## [41] "Porphyromonas_endodontalis"
## [42] "Porphyromonas_somerae"
## [43] "Prevotella_oris"
## [44] "Kouleothrix_aurantiaca"
## [45] "Hydrogenibacillus_schlegelii"
## [46] "Gemella_bergeri"
## [47] "Gemella_haemolysans"
## [48] "Brochothrix_campestris"
## [49] "Abiotrophia_defectiva"
## [50] "Abiotrophia_sp_HMSC24B09"
## [51] "Dolosigranulum_pigrum"
## [52] "Granulicatella_adiacens"
## [53] "Granulicatella_elegans"
## [54] "Enterococcus_faecalis"
## [55] "Lactobacillus_rhamnosus"
## [56] "Streptococcus_australis"
## [57] "Streptococcus_cristatus"
## [58] "Streptococcus_gordonii"
## [59] "Streptococcus_milleri"
## [60] "Streptococcus_peroris"
## [61] "Streptococcus_pneumoniae"
## [62] "Streptococcus_pseudopneumoniae"
## [63] "Streptococcus_sanguinis"
## [64] "Streptococcus_sp_A12"
## [65] "Streptococcus_sp_F0442"
## [66] "Streptococcus_sp_HMSC034E03"
## [67] "Streptococcus_sp_HMSC067H01"
## [68] "Streptococcus_sp_HMSC071D03"
## [69] "Streptococcus_sp_HPH0090"
## [70] "Streptococcus_sp_M334"
## [71] "Streptococcus_vestibularis"
## [72] "Eubacterium_brachy"
## [73] "Eubacterium_infirmum"
## [74] "Eubacterium_nodatum"
## [75] "Eubacterium_sulci"
## [76] "Mogibacterium_pumilum"
## [77] "Mogibacterium_timidum"
## [78] "Oribacterium_sinus"
## [79] "Peptostreptococcus_stomatis"
## [80] "Bulleidia_extructa"
## [81] "Limnochorda_pilosa"
## [82] "Anaerococcus_nagyae"
## [83] "Finegoldia_magna"
## [84] "Parvimonas_sp_oral_taxon_110"
## [85] "Parvimonas_sp_oral_taxon_393"
## [86] "Fusobacterium_nucleatum"
## [87] "Paludisphaera_borealis"
## [88] "Achromobacter_xylosoxidans"
## [89] "Cupriavidus_sp"
## [90] "Sutterella_parvirubra"
## [91] "Anaerobiospirillum_thomasii"
## [92] "Cardiobacterium_hominis"
## [93] "Alkalilimnicola_ehrlichii"
## [94] "Escherichia_coli"
## [95] "Thiohalorhabdus_denitrificans"
## [96] "Candida_albicans"
## [97] "Candida_dubliniensis"
## [98] "Candida_parapsilosis"
## [99] "Malassezia_restricta"
## [100] "Nakamurella_silvestris"
## [101] "Prevotella_jejuni"
## [102] "Prevotella_pallens"
## [103] "Prevotella_salivae"
## [104] "Prevotella_sp_oral_taxon_306"
## [105] "Prevotella_veroralis"
## [106] "Bacillus_ginsengihumi"
## [107] "Listeria_floridensis"
## [108] "Agitococcus_lubricus"
## [109] "Lactobacillus_gasseri"
## [110] "Sharpea_azabuensis"
## [111] "Streptococcus_mutans"
## [112] "Oribacterium_asaccharolyticum"
## [113] "Megasphaera_micronuciformis"
## [114] "Neisseria_flavescens"
## [115] "Neisseria_subflava"
## [116] "Stenotrophomonas_maltophilia"
## [117] "Stenotrophomonas_pavanii"
## [118] "Stenotrophomonas_rhizophila"
## [119] "Bacillus_intestinalis"
## [120] "Listeria_innocua"
## [121] "Listeria_monocytogenes"
## [122] "Staphylococcus_haemolyticus"
## [123] "Streptococcus_sobrinus"
## [124] "Eggerthia_catenaformis"
## [125] "Rickettsia_felis"
## [126] "Haemophilus_parainfluenzae"
## [127] "Candida_orthopsilosis"
## [128] "Nannocystis_exedens"
## [129] "Campylobacter_concisus"
## [130] "Franconibacter_helveticus"
## [131] "Klebsiella_pneumoniae"
## [132] "Salmonella_enterica"
## [133] "Superficieibacter_electus"
## [134] "Pseudomonas_fluorescens"
## [135] "Saccharomyces_cerevisiae"
## [136] "S._cerevisiae.x.S._kudriavzevii"
## [137] "Saccharomyces_kudriavzevii"
## [138] "Cryptococcus_gattii_VGI"
## [139] "Cryptococcus_gattii_VGII"
## [140] "Cryptococcus_gattii_VGIII"
## [141] "Cryptococcus_neoformans"
## [142] "Listeria_marthii"
## [143] "Erwinia_persicina"
## [144] "Pseudomonas_formosensis"
## [145] "Pseudomonas_putida"Maaslin may use different CLR calculation with microbiome::transform().
#Maaslin2 normalization
#microbiome normalization - count
clr_spt_transformed_otu <- otu_table(physeq0_clr_spt) %>% t %>% data.frame()
#microbiome normalization - relative abundance
clr_spt_transformed_otu_rel <- physeq0_clr_all_rel %>% otu_table %>% t %>% data.frame()
#both normalization - for read counts and relative abundances with microbiome package - showed the same output.
#Maaslin showed slightly different data.Running LMER for maaslin transfomred output
# Masslin normalization for LMER ------------------------------------------
# LMER on maaslin transformed data
lmer_maaslin_bal <- data.frame()
for(i in 1:54) {
#Creating a data frame that includes CLR transformed data of i-th bug.
#making differnt otu tables for each sample type
otu_table_bal <- maaslin_bal_transformed_otu %>% column_to_rownames("feature")
#tax table for different sample type
taxa_data_bal <- otu_table_bal[i] %>% data.frame()
#Making a merged dataframe having sample data and CLR transformed output
lme_data_bal <- merge(taxa_data_bal, sample_data(physeq0_clr_bal), by = 0) %>% column_to_rownames("Row.names")
#generating a character of formula.
#Here, as the taxa are already CLR transformed, I did not make model at log-scale.
lme4_formula <- paste(names(taxa_data_bal), "~", "lypma + benzonase + host_zero + molysis + qiaamp + (1|subject_id)")
#BAL stratified analysis
BAL_result <- lme4::lmer(formula = lme4_formula,
data = lme_data_bal) %>%
lmerTest::as_lmerModLmerTest() %>% # p-value calculated by lmerTest
summary %>%
.$coefficients %>%
data.frame(check.names = F) %>%
mutate(taxa = names(taxa_data_bal),
sample_type = "BAL") %>%
rownames_to_column("metadata") %>%
subset(., .$metadata %in% c("lypma", "benzonase", "host_zero", "molysis", "qiaamp"))
#row binding all the associations of i-th taxa to one data frame
lmer_maaslin_bal <- rbind(lmer_maaslin_bal,
BAL_result %>% remove_rownames()
)
}
lmer_maaslin_ns <- data.frame()
for(i in 1:29) {
#Creating a data frame that includes CLR transformed data of i-th bug.
#making differnt otu tables for each sample type
otu_table_ns <- maaslin_ns_transformed_otu %>% column_to_rownames("feature")
#tax table for different sample type
taxa_data_ns <- otu_table_ns[i] %>% data.frame()
#Making a merged dataframe having sample data and CLR transformed output
lme_data_ns <- merge(taxa_data_ns, sample_data(physeq0_clr_ns), by = 0) %>% column_to_rownames("Row.names")
#generating a character of formula.
#Here, as the taxa are already CLR transformed, I did not make model at log-scale.
lme4_formula <- paste(names(taxa_data_ns), "~", "lypma + benzonase + host_zero + molysis + qiaamp + (1|subject_id)")
#BAL stratified analysis
NS_result <- lme4::lmer(formula = lme4_formula,
data = lme_data_ns) %>%
lmerTest::as_lmerModLmerTest() %>% # p-value calculated by lmerTest
summary %>%
.$coefficients %>%
data.frame(check.names = F) %>%
mutate(taxa = names(taxa_data_ns),
sample_type = "Nasal") %>%
rownames_to_column("metadata") %>%
subset(., .$metadata %in% c("lypma", "benzonase", "host_zero", "molysis", "qiaamp"))
#row binding all the associations of i-th taxa to one data frame
lmer_maaslin_ns <- rbind(lmer_maaslin_ns,
NS_result %>% remove_rownames()
)
}
lmer_maaslin_ns lmer_maaslin_spt <- data.frame()
for(i in 1:155) {
#Creating a data frame that includes CLR transformed data of i-th bug.
#making differnt otu tables for each sample type
otu_table_spt <- maaslin_spt_transformed_otu %>% column_to_rownames("feature")
#tax table for different sample type
taxa_data_spt <- otu_table_spt[i] %>% data.frame()
#Making a merged dataframe having sample data and CLR transformed output
lme_data_spt <- merge(taxa_data_spt, sample_data(physeq0_clr_spt), by = 0) %>% column_to_rownames("Row.names")
#generating a character of formula.
#Here, as the taxa are already CLR transformed, I did not make model at log-scale.
lme4_formula <- paste(names(taxa_data_spt), "~", "lypma + benzonase + host_zero + molysis + qiaamp + (1|subject_id)")
#BAL stratified analysis
Sputum_result <- lme4::lmer(formula = lme4_formula,
data = lme_data_spt) %>%
lmerTest::as_lmerModLmerTest() %>% # p-value calculated by lmerTest
summary %>%
.$coefficients %>%
data.frame(check.names = F) %>%
mutate(taxa = names(taxa_data_spt),
sample_type = "Sputum") %>%
rownames_to_column("metadata") %>%
subset(., .$metadata %in% c("lypma", "benzonase", "host_zero", "molysis", "qiaamp"))
#row binding all the associations of i-th taxa to one data frame
lmer_maaslin_spt <- rbind(lmer_maaslin_spt,
Sputum_result %>% remove_rownames()
)
}MaAslin - LMER (with zeros) comparison - p & q values
lmer_taxa_withzeros %>% subset(., .$taxa == "Staphylococcus_aureus" & .$metadata == "lypma" & .$sample_type == "Nasal") q-value smaller than p-value!! at LMER!
maaslin_ns %>% subset(., .$feature == "Staphylococcus_aureus" & .$metadata == "lypma") q-val > p-val higher at MaAsLin
lmer_maaslin_ns %>%
mutate(qval = qvalue(`Pr(>|t|)`)$qval) %>%
subset(., .$taxa == "Staphylococcus_aureus" & .$metadata == "lypma" & .$sample_type == "Nasal") q-val > p-val higher at LMER with MaAsLin transfored data.
Volcano plot
lmer_taxa_withzeros %>% subset(., .$sample_type == "BAL") %>%
ggplot(., aes(x = Estimate, y = -log10(q_val))) +
geom_point() +
ggtitle("BAL LMER (with zeros) + CLR") +
geom_hline(yintercept = 1, col = "red")
lmer_taxa_withzeros %>% subset(., .$sample_type == "Nasal") %>%
ggplot(., aes(x = Estimate, y = -log10(q_val))) +
geom_point() +
ggtitle("Nasal LMER (with zeros) + CLR") +
geom_hline(yintercept = 1, col = "red")
maaslin_bal %>%
ggplot(., aes(x = coef, y = -log10(qval))) +
geom_point() +
ggtitle("BAL MaAslin CLR") +
geom_hline(yintercept = 1, col = "red")
maaslin_ns %>%
ggplot(., aes(x = coef, y = -log10(qval))) +
geom_point() +
ggtitle("Nasal MaAslin CLR") +
geom_hline(yintercept = 1, col = "red")
with LMER result, it has lower p-value but higher q-value??
Calculating q-values at stratified samples
lmer_maaslin_bal_withzeros <- lmer_taxa_withzeros %>%
subset(., .$sample_type == "BAL") %>%
mutate(q_val = qvalue::qvalue(`Pr(>|t|)`)$qvalue)
lmer_maaslin_ns_withzeros <- lmer_taxa_withzeros %>%
subset(., .$sample_type == "Nasal") %>%
mutate(q_val = qvalue::qvalue(`Pr(>|t|)`)$qvalues)
lmer_maaslin_spt_withzeros <- lmer_taxa_withzeros %>%
subset(., .$sample_type == "Sputum") %>%
mutate(q_val = qvalue::qvalue(`Pr(>|t|)`)$qvalue)
lmer_maaslin_ns_withzeros %>% subset(., .$taxa == "Staphylococcus_aureus" & .$metadata == "lypma" & .$sample_type == "Nasal") maaslin_ns %>% subset(., .$feature == "Staphylococcus_aureus" & .$metadata == "lypma") Even showing lower q-value than maaslin????
q-value smaller than p-value!!
Maybe, q-value is dependent on total number of tests, and it affected the result?
LME4 for CLR normalized data (zero-filtered)
# CLR transformation was conducted after stratifying the data by sample type, and filtering
physeq0_clr_spt <- subset_samples(phyloseq$phyloseq_count_filtered, sample_type == "Sputum") %>%
prune_taxa(taxa_sums(.) > 0, .) %>%
microbiome::transform(., 'clr')
physeq0_clr_bal <- subset_samples(phyloseq$phyloseq_count_filtered, sample_type == "BAL") %>%
prune_taxa(taxa_sums(.) > 0, .) %>%
microbiome::transform(., 'clr')
physeq0_clr_ns <- subset_samples(phyloseq$phyloseq_count_filtered, sample_type == "Nasal") %>%
prune_taxa(taxa_sums(.) > 0, .) %>%
microbiome::transform(., 'clr')
#Running LME4 for each taxa
#BAL
lmer_taxa_bal <- data.frame()
a <- physeq0_clr_bal %>% taxa_sums() %>% length()
for(i in 1:a) {
#Creating a data frame that includes CLR transformed data of i-th bug.
#making differnt otu tables for each sample type
otu_table_bal <- physeq0_clr_bal %>% otu_table
#tax table for different sample type
taxa_data_bal <- otu_table_bal[i] %>% t %>% data.frame()
#Making a merged dataframe having sample data and CLR transformed output
lme_data_bal <- merge(taxa_data_bal, sample_data(physeq0_clr_bal), by = 0) %>% column_to_rownames("Row.names")
#generating a character of formula.
#Here, as the taxa are already CLR transformed, I did not make model at log-scale.
lme4_formula <- paste(names(taxa_data_bal), "~", "lypma + benzonase + host_zero + molysis + qiaamp + (1|subject_id)")
#BAL stratified analysis
BAL_result <- lme4::lmer(formula = lme4_formula,
data = lme_data_bal) %>%
lmerTest::as_lmerModLmerTest() %>% # p-value calculated by lmerTest
summary %>%
.$coefficients %>%
data.frame(check.names = F) %>%
mutate(feature = names(taxa_data_bal),
sample_type = "BAL") %>%
rownames_to_column("metadata") %>%
subset(., .$metadata %in% c("lypma", "benzonase", "host_zero", "molysis", "qiaamp"))
#row binding all the associations of i-th taxa to one data frame
lmer_taxa_bal <- rbind(lmer_taxa_bal,
BAL_result) %>%
remove_rownames()
}
#Nasal
lmer_taxa_ns <- data.frame()
b <- physeq0_clr_ns %>% taxa_sums() %>% length()
for(i in 1:b) {
#Creating a data frame that includes CLR transformed data of i-th bug.
#making differnt otu tables for each sample type
otu_table_ns <- physeq0_clr_ns %>% otu_table
#tax table for different sample type
taxa_data_ns <- otu_table_ns[i] %>% t %>% data.frame()
#Making a merged dataframe having sample data and CLR transformed output
lme_data_ns <- merge(taxa_data_ns, sample_data(physeq0_clr_ns), by = 0) %>% column_to_rownames("Row.names")
#generating a character of formula.
#Here, as the taxa are already CLR transformed, I did not make model at log-scale.
lme4_formula <- paste(names(taxa_data_ns), "~", "lypma + benzonase + host_zero + molysis + qiaamp + (1|subject_id)")
#BAL stratified analysis
Nasal_result <- lme4::lmer(formula = lme4_formula,
data = lme_data_ns) %>%
lmerTest::as_lmerModLmerTest() %>% # p-value calculated by lmerTest
summary %>%
.$coefficients %>%
data.frame(check.names = F) %>%
mutate(feature = names(taxa_data_ns),
sample_type = "Nasal") %>%
rownames_to_column("metadata") %>%
subset(., .$metadata %in% c("lypma", "benzonase", "host_zero", "molysis", "qiaamp"))
#row binding all the associations of i-th taxa to one data frame
lmer_taxa_ns <- rbind(lmer_taxa_ns,
Nasal_result) %>%
remove_rownames()
}
lmer_taxa_spt <- data.frame()
c <- physeq0_clr_spt %>% taxa_sums() %>% length()
for(i in 1:c) {
#Creating a data frame that includes CLR transformed data of i-th bug.
#making differnt otu tables for each sample type
otu_table_spt <- physeq0_clr_spt %>% otu_table
#tax table for different sample type
taxa_data_spt <- otu_table_spt[i] %>% t %>% data.frame()
#Making a merged dataframe having sample data and CLR transformed output
lme_data_spt <- merge(taxa_data_spt, sample_data(physeq0_clr_spt), by = 0) %>% column_to_rownames("Row.names")
#generating a character of formula.
#Here, as the taxa are already CLR transformed, I did not make model at log-scale.
lme4_formula <- paste(names(taxa_data_spt), "~", "lypma + benzonase + host_zero + molysis + qiaamp + (1|subject_id)")
#stratified analysis
Sputum_result <- lme4::lmer(formula = lme4_formula,
data = lme_data_spt) %>%
lmerTest::as_lmerModLmerTest() %>%
summary %>%
.$coefficients %>%
data.frame(check.names = F) %>%
mutate(feature = names(taxa_data_spt),
sample_type = "Sputum") %>%
rownames_to_column("metadata") %>%
subset(., .$metadata %in% c("lypma", "benzonase", "host_zero", "molysis", "qiaamp"))
#row binding all the associations of i-th taxa to one data frame
lmer_taxa_spt <- rbind(lmer_taxa_spt,
Sputum_result) %>%
remove_rownames()
}
#Calculating q-value
lmer_taxa_bal <- lmer_taxa_bal %>% subset(., .$sample_type == "BAL") %>%
mutate(qval = qvalue::qvalue(`Pr(>|t|)`)$qvalue,
p_bh = p.adjust(p = `Pr(>|t|)`, method = "BH"))
lmer_taxa_ns <- lmer_taxa_ns %>% subset(., .$sample_type == "Nasal") %>%
mutate(qval = qvalue::qvalue(`Pr(>|t|)`)$qvalue,
p_bh = p.adjust(p = `Pr(>|t|)`, method = "BH"))
lmer_taxa_spt <- lmer_taxa_spt %>% subset(., .$sample_type == "Sputum") %>%
mutate(qval = qvalue::qvalue(`Pr(>|t|)`)$qvalue,
p_bh = p.adjust(p = `Pr(>|t|)`, method = "BH")) How was it with zero-removed samples?
lmer_taxa_ns %>% subset(., .$feature == "Staphylococcus_aureus" & .$metadata == "lypma" & .$sample_type == "Nasal") Now, at least, qval way higher than p-value.
lmer_taxa_bal %>%
ggplot(., aes(x = Estimate, y = -log10(qval))) +
geom_point() +
ggtitle("BAL LMER (zero-filtered) + CLR, 25 significant taxa") +
geom_hline(yintercept = 1, col = "red")
lmer_taxa_ns %>%
ggplot(., aes(x = Estimate, y = -log10(qval))) +
geom_point() +
ggtitle("Nasal LMER (zero-filtered) + CLR, 25 significant taxa") +
geom_hline(yintercept = 1, col = "red")
lmer_taxa_spt %>%
ggplot(., aes(x = Estimate, y = -log10(qval))) +
geom_point() +
ggtitle("Sputum LMER (zero-filtered) + CLR, 25 significant taxa") +
geom_hline(yintercept = 1, col = "red")
Volcano - MaAslin
maaslin_bal %>%
ggplot(., aes(x = coef, y = -log10(qval))) +
geom_point() +
ggtitle("MaAslin CLR") +
geom_hline(yintercept = 1, col = "red")
maaslin_ns %>%
ggplot(., aes(x = coef, y = -log10(qval))) +
geom_point() +
ggtitle("MaAslin CLR") +
geom_hline(yintercept = 1, col = "red")
maaslin_sputum %>%
ggplot(., aes(x = coef, y = -log10(qval))) +
geom_point() +
ggtitle("MaAslin CLR") +
geom_hline(yintercept = 1, col = "red")
Now LMER and MaAslin got similar!
Bibliography
#===============================================================================
#BTC.LineZero.Footer.1.1.0
#===============================================================================
#R markdown citation generator.
#===============================================================================
#RLB.Dependencies:
# magrittr, pacman, stringr
#=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
#BTC.Dependencies:
# LineZero.Header
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#Generates citations for each explicitly loaded library.
#=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
str_libraries <- c("r", str_libraries)
for (str_libraries in str_libraries) {
str_libraries |>
pacman::p_citation() |>
print(bibtex = FALSE) |>
capture.output() %>%
.[-1:-3] %>% .[. != ""] |>
stringr::str_squish() |>
stringr::str_replace("_", "") |>
cat()
cat("\n")
}## Computing. R Foundation for Statistical Computing, Vienna, Austria. <https://www.R-project.org/>. We have invested a lot of time and effort in creating R, please cite it when using it for data analysis. See also 'citation("pkgname")' for citing R packages.
## version 1.4.3, <https://CRAN.R-project.org/package=readxl>.
## graphics of microbiome census data. Paul J. McMurdie and Susan Holmes (2013) PLoS ONE 8(4):e61217.
## Grolemund G, Hayes A, Henry L, Hester J, Kuhn M, Pedersen TL, Miller E, Bache SM, Müller K, Ooms J, Robinson D, Seidel DP, Spinu V, Takahashi K, Vaughan D, Wilke C, Woo K, Yutani H (2019). "Welcome to the tidyverse." Journal of Open Source Software_, *4*(43), 1686. doi:10.21105/joss.01686 <https://doi.org/10.21105/joss.01686>.
## R. version 0.5.0. Buffalo, New York. http://github.com/trinker/pacman
## J, reikoch, Beasley W, O'Connor B, Warnes GR, Quinn M, Kamvar ZN (2023). yaml: Methods to Convert R Data to YAML and Back_. R package version 2.3.7, <https://CRAN.R-project.org/package=yaml>. ATTENTION: This citation information has been auto-generated from the package DESCRIPTION file and may need manual editing, see 'help("citation")'.
## Springer-Verlag New York, 2016.
## http://microbiome.github.io
## "Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data." bioRxiv_, 221499. doi:10.1101/221499 <https://doi.org/10.1101/221499>.
## Plots. R package version 0.6.0, <https://CRAN.R-project.org/package=ggpubr>.
## Fitting Linear Mixed-Effects Models Using lme4. Journal of Statistical Software, 67(1), 1-48. doi:10.18637/jss.v067.i01.
## Package: Tests in Linear Mixed Effects Models." Journal of Statistical Software, *82*(13), 1-26. doi:10.18637/jss.v082.i13 <https://doi.org/10.18637/jss.v082.i13>.
## Population-scale Meta-omics Studies, http://huttenhower.sph.harvard.edu/maaslin2. To cite the MaAsLin 2 software, please use: Mallick H, Rahnavard A, McIver LJ (2020). MaAsLin 2: Multivariable Association in Population-scale Meta-omics Studies. R/Bioconductor package, http://huttenhower.sph.harvard.edu/maaslin2.
## estimation for false discovery rate control. doi:10.18129/B9.bioc.qvalue <https://doi.org/10.18129/B9.bioc.qvalue>, R package version 2.32.0, <https://bioconductor.org/packages/qvalue>.#===============================================================================